AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0809090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0809090 MtrunA17_Chr5g0424491 94.344 884 20 5 1 854 1 884 0.0 1704
Msa0809090 MtrunA17_Chr3g0115151 71.548 840 195 10 54 854 4 838 0.0 1256
Msa0809090 MtrunA17_Chr3g0115131 64.646 891 263 13 1 854 1 876 0.0 1167
Msa0809090 MtrunA17_Chr7g0254371 40.840 262 132 6 586 845 30 270 6.38e-55 191
Msa0809090 MtrunA17_Chr3g0118791 38.971 272 143 6 576 845 20 270 4.48e-53 186
Msa0809090 MtrunA17_Chr8g0355241 39.526 253 132 5 594 845 55 287 8.51e-51 180
Msa0809090 MtrunA17_Chr6g0459641 31.915 376 206 15 84 429 20 375 5.14e-45 167
Msa0809090 MtrunA17_Chr4g0063451 35.628 247 132 6 593 833 68 293 5.22e-40 150
Msa0809090 MtrunA17_Chr7g0227151 30.650 323 185 10 146 447 30 334 2.07e-36 140
Msa0809090 MtrunA17_Chr5g0419651 47.525 101 45 2 483 582 1 94 4.39e-21 89.7
Msa0809090 MtrunA17_Chr8g0346311 43.902 82 45 1 483 563 1 82 6.50e-16 75.5
Msa0809090 MtrunA17_Chr4g0010061 32.479 117 77 2 483 597 14 130 1.58e-15 74.7
Msa0809090 MtrunA17_Chr7g0276081 40.506 79 46 1 484 561 3 81 4.58e-15 73.2
Msa0809090 MtrunA17_Chr3g0127451 38.750 80 48 1 483 561 1 80 5.94e-15 72.4
Msa0809090 MtrunA17_Chr6g0486891 40.230 87 50 2 476 561 32 117 1.38e-12 65.5
Msa0809090 MtrunA17_Chr3g0134591 37.662 77 47 1 486 561 3 79 1.52e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0809090 AT1G37130.1 69.608 918 214 12 1 854 1 917 0.0 1282
Msa0809090 AT1G77760.1 66.343 927 229 11 1 854 1 917 0.0 1276
Msa0809090 AT5G17770.1 40.310 258 131 7 590 845 37 273 1.12e-52 185
Msa0809090 AT3G01910.1 32.708 373 207 14 84 429 20 375 4.06e-51 184
Msa0809090 AT5G20080.1 38.057 247 124 8 594 833 72 296 8.33e-41 153
Msa0809090 AT3G01910.2 32.770 296 161 11 156 429 1 280 2.11e-37 142
Msa0809090 AT3G01910.3 32.203 236 126 10 210 429 6 223 2.21e-27 112
Msa0809090 AT5G48810.1 45.000 80 43 1 483 561 1 80 3.13e-19 85.5
Msa0809090 AT2G32720.1 37.607 117 71 2 483 597 1 117 6.55e-19 84.3
Msa0809090 AT1G26340.1 46.250 80 42 1 483 561 1 80 1.37e-17 80.5
Msa0809090 AT5G53560.1 42.500 80 45 1 483 561 1 80 4.71e-16 76.3
Msa0809090 AT2G46650.1 41.667 72 41 1 491 561 6 77 9.40e-13 66.6
Msa0809090 AT1G60660.1 40.000 105 56 4 459 561 21 120 1.08e-12 66.2
Msa0809090 AT2G32720.2 35.043 117 74 2 483 597 1 117 6.57e-11 61.2

Find 250 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGCTGTGCAACCTAATT+TGG 0.114087 5_3:-34933793 Msa0809090:CDS
GAAGGATTTGCTTGTGTTCT+AGG 0.205216 5_3:-34933748 None:intergenic
GGCTCCAGATCATGGGTTTC+CGG 0.219536 5_3:-34937531 Msa0809090:CDS
TCCGGTGAGGGTTATTATTC+CGG 0.235054 5_3:-34937513 Msa0809090:CDS
CCCAACCTGAAAATCCTATT+TGG 0.236016 5_3:-34935168 Msa0809090:CDS
ACCCTCTGAAGATCAATTAT+TGG 0.236830 5_3:-34934426 Msa0809090:CDS
CTGAAAGGTTATTCATATTC+AGG 0.243055 5_3:-34936873 Msa0809090:intron
CAATCCTCCCAACGAGCTTT+TGG 0.246878 5_3:+34937944 None:intergenic
TTTCCATGCATGGAGTTATT+TGG 0.248242 5_3:+34934575 None:intergenic
AATATTGGTGTTGGTGCTTT+TGG 0.255382 5_3:-34935267 Msa0809090:CDS
TGGGATTCAAACACGTTCTA+AGG 0.257893 5_3:-34937696 Msa0809090:CDS
ACAAGTAGCGTCGATGAAAT+TGG 0.269252 5_3:-34934329 Msa0809090:CDS
AGCCACCGGGATGGTCTTTA+AGG 0.271475 5_3:+34934738 None:intergenic
TTACCGGGAAACCCGGTTTC+AGG 0.284009 5_3:+34938239 None:intergenic
CCGGTGAGGGTTATTATTCC+GGG 0.302899 5_3:-34937512 Msa0809090:CDS
GGTGGCGGTGGTTCGAAATA+TGG 0.305756 5_3:-34937632 Msa0809090:CDS
AGAGCCATGATTTCTTTAAT+AGG 0.311118 5_3:+34934530 None:intergenic
CGAAATATGGAACAAGTATT+AGG 0.314471 5_3:-34937619 Msa0809090:CDS
TTGATAAACCGGTGTGATTC+CGG 0.315993 5_3:+34934091 None:intergenic
AAGTGTGAACGACGCCGTTT+AGG 0.316093 5_3:+34938290 None:intergenic
TGATGGTCATTATCATTATA+AGG 0.322443 5_3:-34937429 Msa0809090:CDS
GTTGAGGTGTTAGACCTTCT+TGG 0.325611 5_3:-34935235 Msa0809090:CDS
TATTCCAATTTCTCCTTTGT+GGG 0.326683 5_3:+34934988 None:intergenic
ACGAAGGAACGTTAGATAAC+TGG 0.337193 5_3:-34938102 Msa0809090:CDS
CCCTCTGAAGATCAATTATT+GGG 0.338967 5_3:-34934425 Msa0809090:CDS
AAATCCTATTTGGAATGTTA+TGG 0.341027 5_3:-34935158 Msa0809090:intron
GAGGCTTTGGCTCCAGATCA+TGG 0.351795 5_3:-34937539 Msa0809090:CDS
CAACAAAATATGGAAAATAT+TGG 0.352911 5_3:-34935282 Msa0809090:CDS
TATTTAGACTCCCTCACTAT+TGG 0.354916 5_3:-34934230 Msa0809090:CDS
AGGCCCCACAAAGGAGAAAT+TGG 0.357826 5_3:-34934992 Msa0809090:CDS
GATAAATCTACCTTCTTCAT+TGG 0.359590 5_3:+34937367 None:intergenic
GGCTCGACATTGGAAGTAAA+AGG 0.368116 5_3:-34934209 Msa0809090:CDS
AGCTCATTGATTATATATTC+TGG 0.369828 5_3:+34936978 None:intergenic
TGCTGTCCCAAAAGCTCGTT+GGG 0.370244 5_3:-34937951 Msa0809090:CDS
ACAGTGATAGGTTCAAGATT+TGG 0.371731 5_3:-34933950 Msa0809090:CDS
ATACTTTGGCATTGGCTTGT+GGG 0.376074 5_3:-34933833 Msa0809090:CDS
ATCTTCGTCGTCGCTGCTGA+AGG 0.380395 5_3:+34938207 None:intergenic
GCTTCCATGGTCCGTCTCAC+AGG 0.384505 5_3:-34938067 Msa0809090:CDS
TGTTACCGTCGATGGAAAAT+TGG 0.384736 5_3:-34934372 Msa0809090:CDS
ATTTCATCGACGCTACTTGT+TGG 0.388753 5_3:+34934332 None:intergenic
CTATTCCAATTTCTCCTTTG+TGG 0.388854 5_3:+34934987 None:intergenic
CATGCAGAATGGTGAGGCTT+TGG 0.390036 5_3:-34937552 Msa0809090:intron
TGCTCGTACAGCAATCTCTT+TGG 0.397955 5_3:+34935210 None:intergenic
GGTCCATGGTGAACCGGGTT+GGG 0.398235 5_3:+34937891 None:intergenic
CGAGCCGGTCCATGGTGAAC+CGG 0.399215 5_3:+34937885 None:intergenic
TGCGTAGTCCATGAGTTTAT+AGG 0.403402 5_3:+34936909 None:intergenic
CAACCACCTGATTGGTTACC+TGG 0.409897 5_3:+34934944 None:intergenic
ATACATTTCAGTTTGATCAT+TGG 0.411130 5_3:+34934043 None:intergenic
TTTCATCCATGACCTGAAAC+CGG 0.413074 5_3:-34938251 Msa0809090:CDS
CGTCAATTCCGTAACCTAAA+CGG 0.414260 5_3:-34938304 Msa0809090:CDS
ACAAAACCCTTGATTCTACT+TGG 0.414597 5_3:-34934799 Msa0809090:CDS
CAAGTGTAACGGGTAATTCC+CGG 0.416021 5_3:+34937846 None:intergenic
CAAAAGCTCGTTGGGAGGAT+TGG 0.416617 5_3:-34937943 Msa0809090:CDS
GCAACCTAATTTGGAAAAGA+TGG 0.420735 5_3:-34933784 Msa0809090:CDS
TTGCCATCCAACCACCTGAT+TGG 0.423313 5_3:+34934936 None:intergenic
CCCGTTACACTTGTTTGTGC+TGG 0.432618 5_3:-34937836 Msa0809090:CDS
TGAGACATGATTCCACCATT+AGG 0.433961 5_3:+34934254 None:intergenic
TTTGAAGATGTGTTCATGAA+TGG 0.441590 5_3:+34934851 None:intergenic
ATTGGTTACCTGGTTGTGTT+GGG 0.444285 5_3:+34934954 None:intergenic
GGGCAAAGAATTACAGTGAT+AGG 0.447955 5_3:-34933962 Msa0809090:CDS
ATTGGCTGGTGAGGATACTT+TGG 0.450569 5_3:-34933847 Msa0809090:CDS
CAAGTAGCGTCGATGAAATT+GGG 0.454166 5_3:-34934328 Msa0809090:CDS
TGCTCCTATTAAAGAAATCA+TGG 0.454579 5_3:-34934534 Msa0809090:CDS
GATACTTTGGCATTGGCTTG+TGG 0.455319 5_3:-34933834 Msa0809090:CDS
GATTGGTTACCTGGTTGTGT+TGG 0.458076 5_3:+34934953 None:intergenic
TCTTACATCATGTGAAATTG+AGG 0.459529 5_3:+34934466 None:intergenic
AGTGGTGGTTCTGAATTGAA+TGG 0.460068 5_3:+34938037 None:intergenic
TTCTTTAATAGGAGCAAGAT+GGG 0.461432 5_3:+34934541 None:intergenic
TGTATGTTGTTTATGCAAAC+CGG 0.462216 5_3:-34934025 Msa0809090:CDS
CAAGATGCTGTCCGAGCCAC+CGG 0.463724 5_3:+34934724 None:intergenic
TTCATCCATGACCTGAAACC+GGG 0.464711 5_3:-34938250 Msa0809090:intron
GTTCAAGATTTGGTATGTTG+TGG 0.467229 5_3:-34933940 Msa0809090:CDS
AAGGATTTGCTTGTGTTCTA+GGG 0.467291 5_3:-34933747 None:intergenic
AGGCTTTGGCTCCAGATCAT+GGG 0.467396 5_3:-34937538 Msa0809090:CDS
AACTAAACCGGTTACTTCAA+CGG 0.471248 5_3:+34937919 None:intergenic
GATTGGACCGTTGAAGTAAC+CGG 0.472200 5_3:-34937926 Msa0809090:CDS
TCTAACGTTCCTTCGTCGCG+TGG 0.474246 5_3:+34938109 None:intergenic
TGCACAGCAAATTGAATCAT+AGG 0.474304 5_3:+34933804 None:intergenic
CAACCTAATTTGGAAAAGAT+GGG 0.478169 5_3:-34933783 Msa0809090:CDS
TGGTGAGGATACTTTGGCAT+TGG 0.478642 5_3:-34933841 Msa0809090:CDS
GTCATGGATGAAATTGTTGC+TGG 0.479408 5_3:+34938261 None:intergenic
GAACGACGCCGTTTAGGTTA+CGG 0.479612 5_3:+34938296 None:intergenic
TTCCTATGTGTTACCGTCGA+TGG 0.479701 5_3:-34934380 Msa0809090:CDS
CCAGCACAAACAAGTGTAAC+GGG 0.480410 5_3:+34937836 None:intergenic
GTGGTGGTTCTGAATTGAAT+GGG 0.480933 5_3:+34938038 None:intergenic
GAGTTCGCCACTTGATAAAC+CGG 0.483104 5_3:+34934080 None:intergenic
CGATGATCCAAGTAGAATCA+AGG 0.483272 5_3:+34934792 None:intergenic
CGGTCCATGGTGAACCGGGT+TGG 0.492398 5_3:+34937890 None:intergenic
AGATCATGGGTTTCCGGTGA+GGG 0.493171 5_3:-34937525 Msa0809090:CDS
GGAAACCCGGTTTCAGGTCA+TGG 0.493206 5_3:+34938245 None:intergenic
ATATTTCGAACCACCGCCAC+CGG 0.495108 5_3:+34937634 None:intergenic
ATTTCTTTGCTTTGTCCGAA+TGG 0.495282 5_3:+34934660 None:intergenic
CTCACCGGAAACCCATGATC+TGG 0.497224 5_3:+34937527 None:intergenic
TCGGTGGAAGGATGGTGAAA+TGG 0.499131 5_3:-34937484 Msa0809090:CDS
ACACAACCAGGTAACCAATC+AGG 0.502603 5_3:-34934950 Msa0809090:CDS
GAGGATTTACCCGGTGGCGG+TGG 0.506165 5_3:-34937644 Msa0809090:CDS
TTGCTCGAAGATTATAGAAT+CGG 0.506492 5_3:-34934638 Msa0809090:CDS
AGGAAAATGTGTTTCCCGAC+GGG 0.508028 5_3:+34934398 None:intergenic
GGAGGATGATATATTGTTGA+GGG 0.508311 5_3:-34934000 Msa0809090:CDS
TTTCTTTAATAGGAGCAAGA+TGG 0.508681 5_3:+34934540 None:intergenic
TCTTCGTCGTCGCTGCTGAA+GGG 0.514170 5_3:+34938208 None:intergenic
CGTTCGTGAGTTTCCAAGCC+GGG 0.516225 5_3:-34937864 Msa0809090:CDS
AACGCCGCGCCACACGGAGT+TGG 0.518250 5_3:+34937745 None:intergenic
GTGGGACACATTGAGTATCT+TGG 0.519227 5_3:-34934182 Msa0809090:CDS
CGTTTAGGTTACGGAATTGA+CGG 0.520579 5_3:+34938305 None:intergenic
CTAACGTTCCTTCGTCGCGT+GGG 0.520618 5_3:+34938110 None:intergenic
GTAACGGGTAATTCCCGGCT+TGG 0.520644 5_3:+34937851 None:intergenic
TGAAGGGTGGGAATATAGTG+TGG 0.521449 5_3:-34933907 Msa0809090:CDS
GACAGCATCTTGATCAATGC+CGG 0.522000 5_3:-34934713 Msa0809090:CDS
GAGGGAAGAGTTAGATGAGT+GGG 0.523109 5_3:-34933982 Msa0809090:CDS
AATTATTGGGACTACCCGTC+GGG 0.523610 5_3:-34934412 Msa0809090:CDS
ACAATATATCATCCTCCGTC+CGG 0.525027 5_3:+34934006 None:intergenic
CAGCGAAACGCCGCGCCACA+CGG 0.525507 5_3:+34937739 None:intergenic
TTGCAAATCTTTGTTTCCCG+TGG 0.525556 5_3:+34934141 None:intergenic
TACGGTGCTGAGGATTTACC+CGG 0.526346 5_3:-34937653 Msa0809090:CDS
AAGAGATTGCTGTACGAGCA+TGG 0.526881 5_3:-34935207 Msa0809090:CDS
CCTCACTATTGGCTCGACAT+TGG 0.531693 5_3:-34934219 Msa0809090:CDS
GAGCCGGTCCATGGTGAACC+GGG 0.533325 5_3:+34937886 None:intergenic
CGAAGGAACGTTAGATAACT+GGG 0.534887 5_3:-34938101 Msa0809090:CDS
AATATGGAACAAGTATTAGG+AGG 0.535140 5_3:-34937616 Msa0809090:CDS
AGATCTTGCCTATAAACTCA+TGG 0.535155 5_3:-34936917 Msa0809090:CDS
CACATTGAGTATCTTGGTAG+AGG 0.535337 5_3:-34934176 Msa0809090:CDS
CATGAGGGAGCATGTTCCAT+TGG 0.536462 5_3:-34933865 Msa0809090:CDS
CGGTGTGATTCCGGTCCCAC+CGG 0.536478 5_3:+34934100 None:intergenic
AGGGAGCATGTTCCATTGGC+TGG 0.536717 5_3:-34933861 Msa0809090:CDS
AAATTCAGTATTTCCATGCA+TGG 0.538380 5_3:+34934565 None:intergenic
GTGACATGGCGTCGTAATCA+CGG 0.538493 5_3:+34936944 None:intergenic
CAGGTAACCAATCAGGTGGT+TGG 0.540183 5_3:-34934943 Msa0809090:CDS
CTTCAGAGGGTAATGCAAAA+CGG 0.542586 5_3:+34934438 None:intergenic
TATTAGGAGGGAAATTGCTA+TGG 0.546248 5_3:-34937603 Msa0809090:CDS
AGAGATTGCTGTACGAGCAT+GGG 0.546335 5_3:-34935206 Msa0809090:CDS
GTTGTGGAAAATGCAAATGA+AGG 0.547180 5_3:-34933924 Msa0809090:CDS
TAAAGACCATCCCGGTGGCT+CGG 0.548191 5_3:-34934735 Msa0809090:CDS
CGGGATGGTCTTTAAGGAAG+CGG 0.550156 5_3:+34934744 None:intergenic
GATGGGGTATGATATTAAGA+AGG 0.550460 5_3:-34933766 Msa0809090:CDS
ATCGGCGAACTTGTTGCCAC+GGG 0.550990 5_3:-34934620 Msa0809090:CDS
GGATGGTGAAATGGCTCAAG+AGG 0.552250 5_3:-34937475 Msa0809090:CDS
GCAGAACAAGCCAATGAAGA+AGG 0.552383 5_3:-34937377 Msa0809090:intron
GGGATGGTCTTTAAGGAAGC+GGG 0.557622 5_3:+34934745 None:intergenic
GTGCACCCGAGGTTTCCTAA+TGG 0.557789 5_3:-34934269 Msa0809090:CDS
TTCCATCGACGGTAACACAT+AGG 0.557938 5_3:+34934378 None:intergenic
ATTCCAATTTCTCCTTTGTG+GGG 0.558001 5_3:+34934989 None:intergenic
CCCAATAATTGATCTTCAGA+GGG 0.558210 5_3:+34934425 None:intergenic
TGCTGTACGAGCATGGGATG+AGG 0.559709 5_3:-34935200 Msa0809090:CDS
CGACGGTTCAACTTCCGCGT+TGG 0.559787 5_3:+34938141 None:intergenic
AGATACTCAATGTGTCCCAC+GGG 0.561482 5_3:+34934185 None:intergenic
TCACCAAATAACTCCATGCA+TGG 0.562432 5_3:-34934578 Msa0809090:CDS
CAGATCATGGGTTTCCGGTG+AGG 0.565204 5_3:-34937526 Msa0809090:CDS
TAACCAATCAGGTGGTTGGA+TGG 0.566160 5_3:-34934939 Msa0809090:CDS
TGCTTACATGCAGAATGGTG+AGG 0.567286 5_3:-34937558 Msa0809090:intron
GTGCTGTCCCAAAAGCTCGT+TGG 0.567454 5_3:-34937952 Msa0809090:CDS
TGCTGTCCGAGCCACCGGGA+TGG 0.569293 5_3:+34934729 None:intergenic
GGTCACACGAAACGCTTCCA+TGG 0.570201 5_3:-34938080 Msa0809090:CDS
TGGTTACGTACGTAGTGGAT+TGG 0.570568 5_3:+34937977 None:intergenic
CACCCGAGGTTTCCTAATGG+TGG 0.570682 5_3:-34934266 Msa0809090:CDS
CCCGGAATAATAACCCTCAC+CGG 0.571094 5_3:+34937512 None:intergenic
GCTGAGGATTTACCCGGTGG+CGG 0.572429 5_3:-34937647 Msa0809090:CDS
TTCCACCATTAGGAAACCTC+GGG 0.572666 5_3:+34934264 None:intergenic
GCATGTTCCATTGGCTGGTG+AGG 0.575892 5_3:-34933856 Msa0809090:CDS
CAGAGGGCTTATACGCTGAA+AGG 0.577829 5_3:-34936888 Msa0809090:CDS
CAATTATTGGGACTACCCGT+CGG 0.578392 5_3:-34934413 Msa0809090:CDS
TGAATTCGAAGCTATCCATT+CGG 0.578646 5_3:-34934675 Msa0809090:CDS
GCAAATTGAATCATAGGTGG+TGG 0.579707 5_3:+34933810 None:intergenic
TGGTGCATGAGACGTGGGAG+TGG 0.582406 5_3:+34938019 None:intergenic
TCCCAATAATTGATCTTCAG+AGG 0.582671 5_3:+34934424 None:intergenic
CAATGGACGGTGGAGAAACA+TGG 0.583710 5_3:-34935336 Msa0809090:CDS
AATCGGCGAACTTGTTGCCA+CGG 0.584732 5_3:-34934621 Msa0809090:CDS
ACCAGCACAAACAAGTGTAA+CGG 0.584993 5_3:+34937835 None:intergenic
GAAGGGTGGGAATATAGTGT+GGG 0.585437 5_3:-34933906 Msa0809090:CDS
CACCACGTGCTTAAACGATG+TGG 0.586044 5_3:-34937716 Msa0809090:CDS
TTCATCGGTACAATCAGTGC+CGG 0.586097 5_3:+34934694 None:intergenic
ATATGGAACAAGTATTAGGA+GGG 0.588083 5_3:-34937615 Msa0809090:CDS
TCGCGTGGGTCGAGAATCGA+CGG 0.589246 5_3:+34938124 None:intergenic
TGTTGCCACGGGTTACACCT+CGG 0.589406 5_3:-34934609 Msa0809090:CDS
AAAGTATCCTCACCAGCCAA+TGG 0.589581 5_3:+34933849 None:intergenic
CTTCCATGGTCCGTCTCACA+GGG 0.590477 5_3:-34938066 Msa0809090:CDS
CGGAGGATGATATATTGTTG+AGG 0.590840 5_3:-34934001 Msa0809090:CDS
TGTTCTGCATCAACATGAGA+AGG 0.592723 5_3:+34937392 None:intergenic
TTGGAAACTCACGAACGAGC+CGG 0.593252 5_3:+34937870 None:intergenic
TGGAAAATGCAAATGAAGGG+TGG 0.596804 5_3:-34933920 Msa0809090:CDS
CAACCCGGTTCACCATGGAC+CGG 0.597430 5_3:-34937889 Msa0809090:CDS
GGGATTCAAACACGTTCTAA+GGG 0.597688 5_3:-34937695 Msa0809090:CDS
CAATCTCTTTGGTACCAAGA+AGG 0.598226 5_3:+34935221 None:intergenic
TCGTTCGTGAGTTTCCAAGC+CGG 0.600291 5_3:-34937865 Msa0809090:CDS
TTTCCCTGTGAGACGGACCA+TGG 0.600709 5_3:+34938063 None:intergenic
ATGGATAGCTTCGAATTCAT+CGG 0.602979 5_3:+34934679 None:intergenic
TTTGAACACCCAACACAACC+AGG 0.604927 5_3:-34934962 Msa0809090:CDS
AACATGGCACGTGTGCACAT+TGG 0.605465 5_3:-34935320 Msa0809090:CDS
TGCATGAGACGTGGGAGTGG+TGG 0.607073 5_3:+34938022 None:intergenic
CGCTTCCTTAAAGACCATCC+CGG 0.607488 5_3:-34934743 Msa0809090:CDS
AAGATACTCAATGTGTCCCA+CGG 0.608335 5_3:+34934184 None:intergenic
GGCAAGATCTCATCGTGACA+TGG 0.608438 5_3:+34936930 None:intergenic
GTTTCCAACTCCGTGTGGCG+CGG 0.609328 5_3:-34937749 Msa0809090:CDS
AACATGGTGAAACAAAGCGT+TGG 0.609781 5_3:-34937794 Msa0809090:CDS
TGAGGGAAGAGTTAGATGAG+TGG 0.610132 5_3:-34933983 Msa0809090:CDS
AATATGGAAAATATTGGTGT+TGG 0.612385 5_3:-34935276 Msa0809090:CDS
GACACGAGTCGAGGTAACAA+TGG 0.614100 5_3:-34935353 Msa0809090:CDS
ATTCCACCATTAGGAAACCT+CGG 0.616676 5_3:+34934263 None:intergenic
TATTTCGAACCACCGCCACC+GGG 0.616840 5_3:+34937635 None:intergenic
ATCCTTCCACCGATAAAACC+CGG 0.620266 5_3:+34937494 None:intergenic
ACCACGTGCTTAAACGATGT+GGG 0.620383 5_3:-34937715 Msa0809090:CDS
TCATGGATGAAATTGTTGCT+GGG 0.621760 5_3:+34938262 None:intergenic
TAGGAAAATGTGTTTCCCGA+CGG 0.623184 5_3:+34934397 None:intergenic
TTTGTGGGAGAACAGGTTGG+TGG 0.623620 5_3:-34937007 Msa0809090:intron
AAACTCATGGACTACGCAGA+GGG 0.624666 5_3:-34936904 Msa0809090:CDS
CTGCTGTTTCCAACTCCGTG+TGG 0.626312 5_3:-34937754 Msa0809090:CDS
CAATGTCGAGCCAATAGTGA+GGG 0.626618 5_3:+34934220 None:intergenic
ATTCTCGACCCACGCGACGA+AGG 0.628737 5_3:-34938118 Msa0809090:CDS
GATGATCCAAGTAGAATCAA+GGG 0.630874 5_3:+34934793 None:intergenic
ATTCATGGAGATTCGATGCG+TGG 0.631020 5_3:+34938176 None:intergenic
AAACCCAACCCGGTTCACCA+TGG 0.631239 5_3:-34937894 Msa0809090:CDS
ATCCACTACGTACGTAACCA+CGG 0.632996 5_3:-34937974 Msa0809090:CDS
AATCACACCGGTTTATCAAG+TGG 0.633560 5_3:-34934087 Msa0809090:CDS
ATGGGTGTTTCCCTGTGAGA+CGG 0.635095 5_3:+34938056 None:intergenic
TGCAGTCGTAGACATTGCCG+TGG 0.636639 5_3:+34934768 None:intergenic
GCAAGAATAACATCACGAGA+AGG 0.636695 5_3:+34937578 None:intergenic
AAGATGCTGTCCGAGCCACC+GGG 0.638298 5_3:+34934725 None:intergenic
CAGACGTAAAGAACAAAACA+TGG 0.641171 5_3:-34937810 Msa0809090:intron
AACCTAATTTGGAAAAGATG+GGG 0.642783 5_3:-34933782 Msa0809090:CDS
CACCGTGGTTACGTACGTAG+TGG 0.642875 5_3:+34937972 None:intergenic
TCCCACATCGTTTAAGCACG+TGG 0.642971 5_3:+34937714 None:intergenic
AAACCGTGGTGCATGAGACG+TGG 0.647425 5_3:+34938013 None:intergenic
CCAATGTCGAGCCAATAGTG+AGG 0.648223 5_3:+34934219 None:intergenic
GGAAAATGCAAATGAAGGGT+GGG 0.649053 5_3:-34933919 Msa0809090:CDS
TTGTGGAAAATGCAAATGAA+GGG 0.650089 5_3:-34933923 Msa0809090:CDS
TCTACTTGGATCATCGTCCA+CGG 0.650893 5_3:-34934785 Msa0809090:CDS
CGAGTCGAGGTAACAATGGA+CGG 0.660453 5_3:-34935349 Msa0809090:CDS
ATTTGGTGACGATGAATCCG+AGG 0.661125 5_3:+34934592 None:intergenic
ATATAGTGTGGGATTCATCA+CGG 0.661845 5_3:-34933895 Msa0809090:CDS
CTCCCACGTCTCATGCACCA+CGG 0.673317 5_3:-34938016 Msa0809090:intron
TTGGAAGTAAAAGGCCCCGT+GGG 0.673786 5_3:-34934200 Msa0809090:CDS
GTTACTACTGATGAATGTGA+TGG 0.676878 5_3:-34937446 Msa0809090:CDS
CGGTGGGACCGGAATCACAC+CGG 0.678093 5_3:-34934099 Msa0809090:CDS
TGTTGTTTATGCAAACCGGA+CGG 0.678346 5_3:-34934021 Msa0809090:CDS
AACGTGTGTAGGCCCCACAA+AGG 0.681655 5_3:-34935001 Msa0809090:intron
GGTGCTGAGGATTTACCCGG+TGG 0.682724 5_3:-34937650 Msa0809090:CDS
TGTCCCAAAAGCTCGTTGGG+AGG 0.683469 5_3:-34937948 Msa0809090:CDS
TGTTTATGCAAACCGGACGG+AGG 0.684105 5_3:-34934018 Msa0809090:CDS
TAGAAAAGTGACACGAGTCG+AGG 0.689532 5_3:-34935362 Msa0809090:CDS
TGAATCCGAGGTGTAACCCG+TGG 0.692496 5_3:+34934604 None:intergenic
TCATCACGGAGAGTATCATG+AGG 0.693280 5_3:-34933881 Msa0809090:CDS
ACAGCAAATTGAATCATAGG+TGG 0.698548 5_3:+34933807 None:intergenic
CAACCAGGTAACCAATCAGG+TGG 0.700340 5_3:-34934947 Msa0809090:CDS
ATTGGAAGTAAAAGGCCCCG+TGG 0.700420 5_3:-34934201 Msa0809090:CDS
TTCCTTAAAGACCATCCCGG+TGG 0.711835 5_3:-34934740 Msa0809090:CDS
CATCACGGAGAGTATCATGA+GGG 0.715577 5_3:-34933880 Msa0809090:CDS
AACCGTGGTGCATGAGACGT+GGG 0.717162 5_3:+34938014 None:intergenic
TAAACTCATGGACTACGCAG+AGG 0.720380 5_3:-34936905 Msa0809090:CDS
GTCGAGGTAACAATGGACGG+TGG 0.728696 5_3:-34935346 Msa0809090:CDS
GATACTCAATGTGTCCCACG+GGG 0.743569 5_3:+34934186 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAAAATTGTTTAA+TGG + chr5_3:34935379-34935398 None:intergenic 10.0%
!!! TTCAAAAAAAATATTTTACA+GGG + chr5_3:34935831-34935850 None:intergenic 10.0%
!!! ATTCAAAAAAAATATTTTAC+AGG + chr5_3:34935832-34935851 None:intergenic 10.0%
!! GTGTTTAATTATATATTTAT+GGG + chr5_3:34936154-34936173 None:intergenic 10.0%
!! AGTGTTTAATTATATATTTA+TGG + chr5_3:34936155-34936174 None:intergenic 10.0%
!!! GTTAATTTTATTATTGTTAT+TGG - chr5_3:34936446-34936465 Msa0809090:intron 10.0%
!! ATAGCAAAAAAAATATGAAA+AGG + chr5_3:34934950-34934969 None:intergenic 15.0%
!!! AGTTTCTATTTATTTTTTTG+AGG - chr5_3:34935588-34935607 Msa0809090:intron 15.0%
!!! GTTTCTATTTATTTTTTTGA+GGG - chr5_3:34935589-34935608 Msa0809090:intron 15.0%
!! TCAGTTGAATAAATAAATAT+AGG - chr5_3:34935762-34935781 Msa0809090:intron 15.0%
!! CAGTTGAATAAATAAATATA+GGG - chr5_3:34935763-34935782 Msa0809090:intron 15.0%
!!! TCAAAAAAAATATTTTACAG+GGG + chr5_3:34935830-34935849 None:intergenic 15.0%
!!! ATTTTTTCAAATTACAAGAA+GGG + chr5_3:34935939-34935958 None:intergenic 15.0%
!!! AATTTTTTCAAATTACAAGA+AGG + chr5_3:34935940-34935959 None:intergenic 15.0%
!! CTTGTAATTTGAAAAAATTT+CGG - chr5_3:34935941-34935960 Msa0809090:intron 15.0%
!!! TCCAAAAAAATATATTTTAC+AGG - chr5_3:34936080-34936099 Msa0809090:intron 15.0%
!!! CCAAAAAAATATATTTTACA+GGG - chr5_3:34936081-34936100 Msa0809090:intron 15.0%
!!! CAAAAAAATATATTTTACAG+GGG - chr5_3:34936082-34936101 Msa0809090:intron 15.0%
!!! AAAAAAATATATTTTACAGG+GGG - chr5_3:34936083-34936102 Msa0809090:intron 15.0%
!! NNNNNNNNNTGAACAATTGT+TGG - chr5_3:34937035-34937054 Msa0809090:intron 15.0%
!! AGATTTATCCTACTTATTAT+TGG - chr5_3:34934721-34934740 Msa0809090:CDS 20.0%
!! TCATGTATTCTTAACTTTAT+TGG - chr5_3:34935038-34935057 Msa0809090:intron 20.0%
!!! TAATTTGATGTTTTCATTCA+AGG - chr5_3:34935230-34935249 Msa0809090:CDS 20.0%
!! TTTCTTTGCATAGAATATTT+GGG - chr5_3:34935321-34935340 Msa0809090:CDS 20.0%
!!! CAAAAAAAATATTTTACAGG+GGG + chr5_3:34935829-34935848 None:intergenic 20.0%
!!! CTTGAAATTTGAAGATTTTT+TGG - chr5_3:34935858-34935877 Msa0809090:intron 20.0%
!!! ATTTGAAGATTTTTTGGTTT+TGG - chr5_3:34935864-34935883 Msa0809090:intron 20.0%
!!! CTAAATTTTCTCAAATTACA+GGG + chr5_3:34935911-34935930 None:intergenic 20.0%
!! TGTACTATCAAAATTCATAA+AGG - chr5_3:34936021-34936040 Msa0809090:intron 20.0%
!!! AATTTGAAGATTTTTGGTTT+TGG + chr5_3:34936048-34936067 None:intergenic 20.0%
!!! CCCTGTAAAATATATTTTTT+TGG + chr5_3:34936084-34936103 None:intergenic 20.0%
!! AATTAAGTCCACAAAAAAAA+AGG + chr5_3:34936277-34936296 None:intergenic 20.0%
!!! CAATATTTTCCATATTTTGT+TGG + chr5_3:34936794-34936813 None:intergenic 20.0%
!! CAACAAAATATGGAAAATAT+TGG - chr5_3:34936792-34936811 Msa0809090:intron 20.0%
! TGATGGTCATTATCATTATA+AGG - chr5_3:34934645-34934664 Msa0809090:CDS 25.0%
!! AGCTCATTGATTATATATTC+TGG + chr5_3:34935099-34935118 None:intergenic 25.0%
!! TTATTCAACTGCAAATTTTG+TGG + chr5_3:34935293-34935312 None:intergenic 25.0%
! CTTTCTTTGCATAGAATATT+TGG - chr5_3:34935320-34935339 Msa0809090:CDS 25.0%
!!! AGAATATTTGGGATATTTTG+AGG - chr5_3:34935332-34935351 Msa0809090:CDS 25.0%
!!! GAATATTTGGGATATTTTGA+GGG - chr5_3:34935333-34935352 Msa0809090:CDS 25.0%
!!! TTAGACAAAGACAACTTTTT+TGG + chr5_3:34935511-34935530 None:intergenic 25.0%
! AACAAAAATTACGTTAGATC+TGG - chr5_3:34935652-34935671 Msa0809090:intron 25.0%
! GATCTGGTTAATAAATTAAG+AGG - chr5_3:34935668-34935687 Msa0809090:intron 25.0%
!!! TAGTTTTTTGTTCTTTTCCT+TGG + chr5_3:34935705-34935724 None:intergenic 25.0%
!!! TTTTTGGTTTTGGAACTTTA+TGG - chr5_3:34935874-34935893 Msa0809090:intron 25.0%
!! CCTAAATTTTCTCAAATTAC+AGG + chr5_3:34935912-34935931 None:intergenic 25.0%
! CCTGTAATTTGAGAAAATTT+AGG - chr5_3:34935909-34935928 Msa0809090:intron 25.0%
!! AAATTTGCTCAAATTAACAG+GGG + chr5_3:34935972-34935991 None:intergenic 25.0%
!! GAAATTTGCTCAAATTAACA+GGG + chr5_3:34935973-34935992 None:intergenic 25.0%
!! CTGTTAATTTGAGCAAATTT+CGG - chr5_3:34935972-34935991 Msa0809090:intron 25.0%
! ACAAAATTGAAGATATGTCA+GGG + chr5_3:34936004-34936023 None:intergenic 25.0%
! TACAAAATTGAAGATATGTC+AGG + chr5_3:34936005-34936024 None:intergenic 25.0%
!! CCTTGTAATTTGAAGATTTT+TGG + chr5_3:34936054-34936073 None:intergenic 25.0%
! CCAAAAATCTTCAAATTACA+AGG - chr5_3:34936051-34936070 Msa0809090:intron 25.0%
!!! ATTACAGTCCTTTTTTTTTG+TGG - chr5_3:34936266-34936285 Msa0809090:intron 25.0%
! TATGAATCTCATTTGACATT+AGG + chr5_3:34936308-34936327 None:intergenic 25.0%
! AAGTAGAAAACTTTGACATT+AGG + chr5_3:34936353-34936372 None:intergenic 25.0%
! ATCTATATGATTGTGTCAAA+TGG + chr5_3:34936506-34936525 None:intergenic 25.0%
! CACAATCATATAGATCAAAA+TGG - chr5_3:34936511-34936530 Msa0809090:intron 25.0%
! ATCATATAGATCAAAATGGT+TGG - chr5_3:34936515-34936534 Msa0809090:intron 25.0%
! CAATTTGACAAGTTGTAATT+TGG - chr5_3:34936600-34936619 Msa0809090:intron 25.0%
! AATATGGAAAATATTGGTGT+TGG - chr5_3:34936798-34936817 Msa0809090:intron 25.0%
!! AAATCCTATTTGGAATGTTA+TGG - chr5_3:34936916-34936935 Msa0809090:CDS 25.0%
! TTTACCATAACATTCCAAAT+AGG + chr5_3:34936923-34936942 None:intergenic 25.0%
!!! AAGAAACTAACATTTTTAGC+CGG - chr5_3:34937955-34937974 Msa0809090:CDS 25.0%
! ATACATTTCAGTTTGATCAT+TGG + chr5_3:34938034-34938053 None:intergenic 25.0%
!! TGGTTTTTCGGATTAATTCA+TGG + chr5_3:34933916-34933935 None:intergenic 30.0%
!!! GCTGTTCATGTTTGTTTTTA+CGG - chr5_3:34934403-34934422 Msa0809090:CDS 30.0%
CGAAATATGGAACAAGTATT+AGG - chr5_3:34934455-34934474 Msa0809090:CDS 30.0%
AATATGGAACAAGTATTAGG+AGG - chr5_3:34934458-34934477 Msa0809090:CDS 30.0%
ATATGGAACAAGTATTAGGA+GGG - chr5_3:34934459-34934478 Msa0809090:CDS 30.0%
!! GTTATTATTCCGGGTTTTAT+CGG - chr5_3:34934571-34934590 Msa0809090:CDS 30.0%
GATAAATCTACCTTCTTCAT+TGG + chr5_3:34934710-34934729 None:intergenic 30.0%
ACTATGCTCCAATAATAAGT+AGG + chr5_3:34934732-34934751 None:intergenic 30.0%
!!! TGGAGCATAGTTTTAAATTG+CGG - chr5_3:34934741-34934760 Msa0809090:CDS 30.0%
ATAATCACAAACGTCAGTAT+AGG - chr5_3:34934895-34934914 Msa0809090:CDS 30.0%
GAATACATGACAAAATCCTT+GGG + chr5_3:34935028-34935047 None:intergenic 30.0%
AGAATACATGACAAAATCCT+TGG + chr5_3:34935029-34935048 None:intergenic 30.0%
!! ACTTTATTGGTTTGTCTTTG+TGG - chr5_3:34935051-34935070 Msa0809090:intron 30.0%
!! CTTTATTGGTTTGTCTTTGT+GGG - chr5_3:34935052-34935071 Msa0809090:intron 30.0%
CTGAAAGGTTATTCATATTC+AGG - chr5_3:34935201-34935220 Msa0809090:CDS 30.0%
!! GACAGATCTAAAAGTATCAT+TGG + chr5_3:34935482-34935501 None:intergenic 30.0%
AAGTTGTCTTTGTCTAAACA+TGG - chr5_3:34935514-34935533 Msa0809090:intron 30.0%
AGTTGTCTTTGTCTAAACAT+GGG - chr5_3:34935515-34935534 Msa0809090:intron 30.0%
! CGAAATTTGCTCAAATTAAC+AGG + chr5_3:34935974-34935993 None:intergenic 30.0%
AAAATTGAAGATATGTCAGG+GGG + chr5_3:34936002-34936021 None:intergenic 30.0%
CAAAATTGAAGATATGTCAG+GGG + chr5_3:34936003-34936022 None:intergenic 30.0%
!! AATTTTGATCTCTCACGTTA+AGG + chr5_3:34936417-34936436 None:intergenic 30.0%
TATAGATCAAAATGGTTGGT+TGG - chr5_3:34936519-34936538 Msa0809090:intron 30.0%
!! TTTTGGTTGAAAACTGACAT+TGG - chr5_3:34936664-34936683 Msa0809090:intron 30.0%
!!! ATTTTGTTGGTTTTTCTGGA+TGG + chr5_3:34936781-34936800 None:intergenic 30.0%
!!! CCATATTTTGTTGGTTTTTC+TGG + chr5_3:34936785-34936804 None:intergenic 30.0%
CCAGAAAAACCAACAAAATA+TGG - chr5_3:34936782-34936801 Msa0809090:intron 30.0%
! ACATTCCAAATAGGATTTTC+AGG + chr5_3:34936914-34936933 None:intergenic 30.0%
!! NNNTGAACAATTGTTGGTTC+AGG - chr5_3:34937041-34937060 Msa0809090:intron 30.0%
!! NNTGAACAATTGTTGGTTCA+GGG - chr5_3:34937042-34937061 Msa0809090:intron 30.0%
TATTCCAATTTCTCCTTTGT+GGG + chr5_3:34937089-34937108 None:intergenic 30.0%
! ACTTTTCTTGAGAATTGGTT+TGG + chr5_3:34937194-34937213 None:intergenic 30.0%
! GAGATACTTTTCTTGAGAAT+TGG + chr5_3:34937199-34937218 None:intergenic 30.0%
TTTGAAGATGTGTTCATGAA+TGG + chr5_3:34937226-34937245 None:intergenic 30.0%
TTGCTCGAAGATTATAGAAT+CGG - chr5_3:34937436-34937455 Msa0809090:CDS 30.0%
AAATTCAGTATTTCCATGCA+TGG + chr5_3:34937512-34937531 None:intergenic 30.0%
TTCTTTAATAGGAGCAAGAT+GGG + chr5_3:34937536-34937555 None:intergenic 30.0%
TTTCTTTAATAGGAGCAAGA+TGG + chr5_3:34937537-34937556 None:intergenic 30.0%
TGCTCCTATTAAAGAAATCA+TGG - chr5_3:34937540-34937559 Msa0809090:CDS 30.0%
AGAGCCATGATTTCTTTAAT+AGG + chr5_3:34937547-34937566 None:intergenic 30.0%
TCTTACATCATGTGAAATTG+AGG + chr5_3:34937611-34937630 None:intergenic 30.0%
! TCTTGGTAGAGGAAATTTTT+CGG - chr5_3:34937909-34937928 Msa0809090:CDS 30.0%
! TGTATGTTGTTTATGCAAAC+CGG - chr5_3:34938049-34938068 Msa0809090:CDS 30.0%
TTGTGGAAAATGCAAATGAA+GGG - chr5_3:34938151-34938170 Msa0809090:CDS 30.0%
CAACCTAATTTGGAAAAGAT+GGG - chr5_3:34938291-34938310 Msa0809090:CDS 30.0%
AACCTAATTTGGAAAAGATG+GGG - chr5_3:34938292-34938311 Msa0809090:CDS 30.0%
TCATGGATGAAATTGTTGCT+GGG + chr5_3:34933815-34933834 None:intergenic 35.0%
ATTAATCCGAAAAACCAACG+CGG - chr5_3:34933919-34933938 Msa0809090:CDS 35.0%
AACTAAACCGGTTACTTCAA+CGG + chr5_3:34934158-34934177 None:intergenic 35.0%
!! GGTTGGGTTTTTAACTAAAC+CGG + chr5_3:34934170-34934189 None:intergenic 35.0%
GTTTAGTTAAAAACCCAACC+CGG - chr5_3:34934170-34934189 Msa0809090:CDS 35.0%
CAGACGTAAAGAACAAAACA+TGG - chr5_3:34934264-34934283 Msa0809090:CDS 35.0%
!!! AACAAAGCGTTGGTTTTAAC+TGG - chr5_3:34934290-34934309 Msa0809090:CDS 35.0%
!!! ACAAAGCGTTGGTTTTAACT+GGG - chr5_3:34934291-34934310 Msa0809090:CDS 35.0%
TATTAGGAGGGAAATTGCTA+TGG - chr5_3:34934471-34934490 Msa0809090:CDS 35.0%
ATTCTTGCTTACATGCAGAA+TGG - chr5_3:34934511-34934530 Msa0809090:CDS 35.0%
GTTACTACTGATGAATGTGA+TGG - chr5_3:34934628-34934647 Msa0809090:CDS 35.0%
ATGTGTCAGTGACTAATTCA+AGG + chr5_3:34934784-34934803 None:intergenic 35.0%
ACACGACATTTGTCAAACAT+CGG - chr5_3:34934918-34934937 Msa0809090:CDS 35.0%
!!! TTTTGATTTGCTTCTACCCA+AGG - chr5_3:34935009-34935028 Msa0809090:intron 35.0%
AGATCTTGCCTATAAACTCA+TGG - chr5_3:34935157-34935176 Msa0809090:intron 35.0%
! CTGATTCTCTGAGCTAATTT+TGG + chr5_3:34935746-34935765 None:intergenic 35.0%
CCTCTGATATAAGTCATTTC+CGG - chr5_3:34935800-34935819 Msa0809090:intron 35.0%
! AATATTTTACAGGGGGAAAC+CGG + chr5_3:34935822-34935841 None:intergenic 35.0%
! TATTTTACAGGGGGTAAAAC+CGG - chr5_3:34936092-34936111 Msa0809090:intron 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr5_3:34936114-34936133 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG - chr5_3:34936112-34936131 Msa0809090:intron 35.0%
GGAAATGACCTATATTACAG+GGG - chr5_3:34936113-34936132 Msa0809090:intron 35.0%
GAAATGACCTATATTACAGG+GGG - chr5_3:34936114-34936133 Msa0809090:intron 35.0%
TGATTTACCCCCTGTAATAT+AGG + chr5_3:34936124-34936143 None:intergenic 35.0%
ACAAGTTGTAATTTGGTACG+TGG - chr5_3:34936607-34936626 Msa0809090:intron 35.0%
!!! AATATTGGTGTTGGTGCTTT+TGG - chr5_3:34936807-34936826 Msa0809090:intron 35.0%
!!! CCAAATAGGATTTTCAGGTT+GGG + chr5_3:34936909-34936928 None:intergenic 35.0%
!!! TCCAAATAGGATTTTCAGGT+TGG + chr5_3:34936910-34936929 None:intergenic 35.0%
ATTCCAATTTCTCCTTTGTG+GGG + chr5_3:34937088-34937107 None:intergenic 35.0%
CTATTCCAATTTCTCCTTTG+TGG + chr5_3:34937090-34937109 None:intergenic 35.0%
ACAAAACCCTTGATTCTACT+TGG - chr5_3:34937275-34937294 Msa0809090:intron 35.0%
GATGATCCAAGTAGAATCAA+GGG + chr5_3:34937284-34937303 None:intergenic 35.0%
ATGGATAGCTTCGAATTCAT+CGG + chr5_3:34937398-34937417 None:intergenic 35.0%
TGAATTCGAAGCTATCCATT+CGG - chr5_3:34937399-34937418 Msa0809090:CDS 35.0%
ATTTCTTTGCTTTGTCCGAA+TGG + chr5_3:34937417-34937436 None:intergenic 35.0%
TTTCCATGCATGGAGTTATT+TGG + chr5_3:34937502-34937521 None:intergenic 35.0%
! TTTTTGCAATGAGCTTGCAT+GGG + chr5_3:34937588-34937607 None:intergenic 35.0%
! ACCCTCTGAAGATCAATTAT+TGG - chr5_3:34937648-34937667 Msa0809090:CDS 35.0%
CCCAATAATTGATCTTCAGA+GGG + chr5_3:34937652-34937671 None:intergenic 35.0%
! CCCTCTGAAGATCAATTATT+GGG - chr5_3:34937649-34937668 Msa0809090:CDS 35.0%
TCCCAATAATTGATCTTCAG+AGG + chr5_3:34937653-34937672 None:intergenic 35.0%
TATTTAGACTCCCTCACTAT+TGG - chr5_3:34937844-34937863 Msa0809090:CDS 35.0%
!!! AAACTAACATTTTTAGCCGG+TGG - chr5_3:34937958-34937977 Msa0809090:CDS 35.0%
!!! AACTAACATTTTTAGCCGGT+GGG - chr5_3:34937959-34937978 Msa0809090:CDS 35.0%
GGAGGATGATATATTGTTGA+GGG - chr5_3:34938074-34938093 Msa0809090:CDS 35.0%
ACAGTGATAGGTTCAAGATT+TGG - chr5_3:34938124-34938143 Msa0809090:CDS 35.0%
! GTTCAAGATTTGGTATGTTG+TGG - chr5_3:34938134-34938153 Msa0809090:CDS 35.0%
GTTGTGGAAAATGCAAATGA+AGG - chr5_3:34938150-34938169 Msa0809090:CDS 35.0%
ATATAGTGTGGGATTCATCA+CGG - chr5_3:34938179-34938198 Msa0809090:CDS 35.0%
ACAGCAAATTGAATCATAGG+TGG + chr5_3:34938270-34938289 None:intergenic 35.0%
TGCACAGCAAATTGAATCAT+AGG + chr5_3:34938273-34938292 None:intergenic 35.0%
!! ATTTGCTGTGCAACCTAATT+TGG - chr5_3:34938281-34938300 Msa0809090:CDS 35.0%
GCAACCTAATTTGGAAAAGA+TGG - chr5_3:34938290-34938309 Msa0809090:CDS 35.0%
! TACCCCATCTTTTCCAAATT+AGG + chr5_3:34938297-34938316 None:intergenic 35.0%
GATGGGGTATGATATTAAGA+AGG - chr5_3:34938308-34938327 Msa0809090:CDS 35.0%
! CGTTTAGGTTACGGAATTGA+CGG + chr5_3:34933772-34933791 None:intergenic 40.0%
CGTCAATTCCGTAACCTAAA+CGG - chr5_3:34933770-34933789 Msa0809090:CDS 40.0%
GTCATGGATGAAATTGTTGC+TGG + chr5_3:34933816-34933835 None:intergenic 40.0%
TTTCATCCATGACCTGAAAC+CGG - chr5_3:34933823-34933842 Msa0809090:CDS 40.0%
TGAAGGGATCTATGTTTACC+GGG + chr5_3:34933853-34933872 None:intergenic 40.0%
CTGAAGGGATCTATGTTTAC+CGG + chr5_3:34933854-34933873 None:intergenic 40.0%
ACGAAGGAACGTTAGATAAC+TGG - chr5_3:34933972-34933991 Msa0809090:CDS 40.0%
CGAAGGAACGTTAGATAACT+GGG - chr5_3:34933973-34933992 Msa0809090:CDS 40.0%
!! GTGGTGGTTCTGAATTGAAT+GGG + chr5_3:34934039-34934058 None:intergenic 40.0%
!! AGTGGTGGTTCTGAATTGAA+TGG + chr5_3:34934040-34934059 None:intergenic 40.0%
ACCAGCACAAACAAGTGTAA+CGG + chr5_3:34934242-34934261 None:intergenic 40.0%
AACATGGTGAAACAAAGCGT+TGG - chr5_3:34934280-34934299 Msa0809090:CDS 40.0%
!!! CAAAGCGTTGGTTTTAACTG+GGG - chr5_3:34934292-34934311 Msa0809090:CDS 40.0%
TGGGATTCAAACACGTTCTA+AGG - chr5_3:34934378-34934397 Msa0809090:CDS 40.0%
GGGATTCAAACACGTTCTAA+GGG - chr5_3:34934379-34934398 Msa0809090:CDS 40.0%
!!! TGTTTGTTTTTACGGTGCTG+AGG - chr5_3:34934411-34934430 Msa0809090:CDS 40.0%
GCAAGAATAACATCACGAGA+AGG + chr5_3:34934499-34934518 None:intergenic 40.0%
!! ATTATTCCGGGTTTTATCGG+TGG - chr5_3:34934574-34934593 Msa0809090:CDS 40.0%
TGTTCTGCATCAACATGAGA+AGG + chr5_3:34934685-34934704 None:intergenic 40.0%
TGAAACACAGACACGATCAT+CGG - chr5_3:34934857-34934876 Msa0809090:CDS 40.0%
TGCGTAGTCCATGAGTTTAT+AGG + chr5_3:34935168-34935187 None:intergenic 40.0%
AAGAGGAGATACTTGTACCA+AGG - chr5_3:34935685-34935704 Msa0809090:intron 40.0%
CCGGAAATGACTTATATCAG+AGG + chr5_3:34935803-34935822 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG - chr5_3:34936111-34936130 Msa0809090:intron 40.0%
!! TGGTTGGTTGGTCTTTCAAA+TGG - chr5_3:34936531-34936550 Msa0809090:intron 40.0%
!! GGTTGGTCTTTCAAATGGTT+TGG - chr5_3:34936536-34936555 Msa0809090:intron 40.0%
GTTGTAATTTGGTACGTGGT+AGG - chr5_3:34936611-34936630 Msa0809090:intron 40.0%
AGGCAGTGAAATGAAACATG+AGG - chr5_3:34936631-34936650 Msa0809090:intron 40.0%
GGCAGTGAAATGAAACATGA+GGG - chr5_3:34936632-34936651 Msa0809090:intron 40.0%
!!! CATGAGGGTGTTATCTCTTT+TGG - chr5_3:34936647-34936666 Msa0809090:intron 40.0%
TGGTTGAAAACTGACATTGG+TGG - chr5_3:34936667-34936686 Msa0809090:intron 40.0%
!! TTGGTGGTGTGCTTTGTTAT+AGG - chr5_3:34936683-34936702 Msa0809090:intron 40.0%
! TGGTGGTGTGCTTTGTTATA+GGG - chr5_3:34936684-34936703 Msa0809090:intron 40.0%
!! CTTTTGGTCTCTAGAAGTTG+AGG - chr5_3:34936823-34936842 Msa0809090:intron 40.0%
CAATCTCTTTGGTACCAAGA+AGG + chr5_3:34936856-34936875 None:intergenic 40.0%
CCCAACCTGAAAATCCTATT+TGG - chr5_3:34936906-34936925 Msa0809090:CDS 40.0%
GGGTAAAAACAAACGTGTGT+AGG - chr5_3:34937062-34937081 Msa0809090:intron 40.0%
ATTGGTTACCTGGTTGTGTT+GGG + chr5_3:34937123-34937142 None:intergenic 40.0%
CGATGATCCAAGTAGAATCA+AGG + chr5_3:34937285-34937304 None:intergenic 40.0%
TCACCAAATAACTCCATGCA+TGG - chr5_3:34937496-34937515 Msa0809090:CDS 40.0%
! GTTTTTGCAATGAGCTTGCA+TGG + chr5_3:34937589-34937608 None:intergenic 40.0%
CTTCAGAGGGTAATGCAAAA+CGG + chr5_3:34937639-34937658 None:intergenic 40.0%
TAGGAAAATGTGTTTCCCGA+CGG + chr5_3:34937680-34937699 None:intergenic 40.0%
TGTTACCGTCGATGGAAAAT+TGG - chr5_3:34937702-34937721 Msa0809090:CDS 40.0%
! CATGACCAATTTTCCATCGA+CGG + chr5_3:34937710-34937729 None:intergenic 40.0%
ATTTCATCGACGCTACTTGT+TGG + chr5_3:34937745-34937764 None:intergenic 40.0%
!! ACAAGTAGCGTCGATGAAAT+TGG - chr5_3:34937745-34937764 Msa0809090:CDS 40.0%
!! CAAGTAGCGTCGATGAAATT+GGG - chr5_3:34937746-34937765 Msa0809090:CDS 40.0%
ATTCCACCATTAGGAAACCT+CGG + chr5_3:34937814-34937833 None:intergenic 40.0%
TGAGACATGATTCCACCATT+AGG + chr5_3:34937823-34937842 None:intergenic 40.0%
AAGATACTCAATGTGTCCCA+CGG + chr5_3:34937893-34937912 None:intergenic 40.0%
CACATTGAGTATCTTGGTAG+AGG - chr5_3:34937898-34937917 Msa0809090:CDS 40.0%
!! AGAGGAAATTTTTCGGTCCA+CGG - chr5_3:34937916-34937935 Msa0809090:CDS 40.0%
! TTGCAAATCTTTGTTTCCCG+TGG + chr5_3:34937936-34937955 None:intergenic 40.0%
TTGATAAACCGGTGTGATTC+CGG + chr5_3:34937986-34938005 None:intergenic 40.0%
!! AATCACACCGGTTTATCAAG+TGG - chr5_3:34937987-34938006 Msa0809090:intron 40.0%
! TGTTGTTTATGCAAACCGGA+CGG - chr5_3:34938053-34938072 Msa0809090:CDS 40.0%
ACAATATATCATCCTCCGTC+CGG + chr5_3:34938071-34938090 None:intergenic 40.0%
CGGAGGATGATATATTGTTG+AGG - chr5_3:34938073-34938092 Msa0809090:CDS 40.0%
GGGCAAAGAATTACAGTGAT+AGG - chr5_3:34938112-34938131 Msa0809090:CDS 40.0%
TGGAAAATGCAAATGAAGGG+TGG - chr5_3:34938154-34938173 Msa0809090:CDS 40.0%
GGAAAATGCAAATGAAGGGT+GGG - chr5_3:34938155-34938174 Msa0809090:CDS 40.0%
!! ATACTTTGGCATTGGCTTGT+GGG - chr5_3:34938241-34938260 Msa0809090:intron 40.0%
GCAAATTGAATCATAGGTGG+TGG + chr5_3:34938267-34938286 None:intergenic 40.0%
TTCATCCATGACCTGAAACC+GGG - chr5_3:34933824-34933843 Msa0809090:CDS 45.0%
TCTATGTTTACCGGGAAACC+CGG + chr5_3:34933845-34933864 None:intergenic 45.0%
ATTCATGGAGATTCGATGCG+TGG + chr5_3:34933901-34933920 None:intergenic 45.0%
!!! CAACTTCCGCGTTGGTTTTT+CGG + chr5_3:34933928-34933947 None:intergenic 45.0%
GAACTGGAGTTATGAAACCG+TGG + chr5_3:34934078-34934097 None:intergenic 45.0%
!! TGGTTACGTACGTAGTGGAT+TGG + chr5_3:34934100-34934119 None:intergenic 45.0%
ATCCACTACGTACGTAACCA+CGG - chr5_3:34934100-34934119 Msa0809090:CDS 45.0%
! AATCCTCCCAACGAGCTTTT+GGG + chr5_3:34934132-34934151 None:intergenic 45.0%
GATTGGACCGTTGAAGTAAC+CGG - chr5_3:34934148-34934167 Msa0809090:CDS 45.0%
!! CAAGTGTAACGGGTAATTCC+CGG + chr5_3:34934231-34934250 None:intergenic 45.0%
CCAGCACAAACAAGTGTAAC+GGG + chr5_3:34934241-34934260 None:intergenic 45.0%
ACCACGTGCTTAAACGATGT+GGG - chr5_3:34934359-34934378 Msa0809090:CDS 45.0%
TGCTTACATGCAGAATGGTG+AGG - chr5_3:34934516-34934535 Msa0809090:CDS 45.0%
TCCGGTGAGGGTTATTATTC+CGG - chr5_3:34934561-34934580 Msa0809090:CDS 45.0%
ATCCTTCCACCGATAAAACC+CGG + chr5_3:34934583-34934602 None:intergenic 45.0%
GCAGAACAAGCCAATGAAGA+AGG - chr5_3:34934697-34934716 Msa0809090:CDS 45.0%
CACTGACACATCTCGATCAA+CGG - chr5_3:34934793-34934812 Msa0809090:CDS 45.0%
GTTTGTCTTTGTGGGAGAAC+AGG - chr5_3:34935060-34935079 Msa0809090:intron 45.0%
! TAAACTCATGGACTACGCAG+AGG - chr5_3:34935169-34935188 Msa0809090:CDS 45.0%
! AAACTCATGGACTACGCAGA+GGG - chr5_3:34935170-34935189 Msa0809090:CDS 45.0%
! GGTGGTGTGCTTTGTTATAG+GGG - chr5_3:34936685-34936704 Msa0809090:intron 45.0%
! GTGGTGTGCTTTGTTATAGG+GGG - chr5_3:34936686-34936705 Msa0809090:intron 45.0%
TAGAAAAGTGACACGAGTCG+AGG - chr5_3:34936712-34936731 Msa0809090:intron 45.0%
! GTTGAGGTGTTAGACCTTCT+TGG - chr5_3:34936839-34936858 Msa0809090:intron 45.0%
TGCTCGTACAGCAATCTCTT+TGG + chr5_3:34936867-34936886 None:intergenic 45.0%
AAGAGATTGCTGTACGAGCA+TGG - chr5_3:34936867-34936886 Msa0809090:intron 45.0%
AGAGATTGCTGTACGAGCAT+GGG - chr5_3:34936868-34936887 Msa0809090:intron 45.0%
TTTGAACACCCAACACAACC+AGG - chr5_3:34937112-34937131 Msa0809090:intron 45.0%
! GATTGGTTACCTGGTTGTGT+TGG + chr5_3:34937124-34937143 None:intergenic 45.0%
ACACAACCAGGTAACCAATC+AGG - chr5_3:34937124-34937143 Msa0809090:intron 45.0%
TAACCAATCAGGTGGTTGGA+TGG - chr5_3:34937135-34937154 Msa0809090:intron 45.0%
TCTACTTGGATCATCGTCCA+CGG - chr5_3:34937289-34937308 Msa0809090:intron 45.0%
GACAGCATCTTGATCAATGC+CGG - chr5_3:34937361-34937380 Msa0809090:intron 45.0%
TTCATCGGTACAATCAGTGC+CGG + chr5_3:34937383-34937402 None:intergenic 45.0%
!! ATTTGGTGACGATGAATCCG+AGG + chr5_3:34937485-34937504 None:intergenic 45.0%
! TGCATGGGATTTTCTCACGT+GGG + chr5_3:34937573-34937592 None:intergenic 45.0%
! TTGCATGGGATTTTCTCACG+TGG + chr5_3:34937574-34937593 None:intergenic 45.0%
CAATTATTGGGACTACCCGT+CGG - chr5_3:34937661-34937680 Msa0809090:CDS 45.0%
AATTATTGGGACTACCCGTC+GGG - chr5_3:34937662-34937681 Msa0809090:CDS 45.0%
AGGAAAATGTGTTTCCCGAC+GGG + chr5_3:34937679-34937698 None:intergenic 45.0%
TTCCTATGTGTTACCGTCGA+TGG - chr5_3:34937694-34937713 Msa0809090:CDS 45.0%
TTCCATCGACGGTAACACAT+AGG + chr5_3:34937699-34937718 None:intergenic 45.0%
TTCCACCATTAGGAAACCTC+GGG + chr5_3:34937813-34937832 None:intergenic 45.0%
CAATGTCGAGCCAATAGTGA+GGG + chr5_3:34937857-34937876 None:intergenic 45.0%
GGCTCGACATTGGAAGTAAA+AGG - chr5_3:34937865-34937884 Msa0809090:CDS 45.0%
AGATACTCAATGTGTCCCAC+GGG + chr5_3:34937892-34937911 None:intergenic 45.0%
GTGGGACACATTGAGTATCT+TGG - chr5_3:34937892-34937911 Msa0809090:CDS 45.0%
!! GAGGAAATTTTTCGGTCCAC+GGG - chr5_3:34937917-34937936 Msa0809090:CDS 45.0%
GAGTTCGCCACTTGATAAAC+CGG + chr5_3:34937997-34938016 None:intergenic 45.0%
! AGTGGCGAACTCGATTTTGA+AGG - chr5_3:34938005-34938024 Msa0809090:intron 45.0%
TGAGGGAAGAGTTAGATGAG+TGG - chr5_3:34938091-34938110 Msa0809090:CDS 45.0%
GAGGGAAGAGTTAGATGAGT+GGG - chr5_3:34938092-34938111 Msa0809090:CDS 45.0%
TGAAGGGTGGGAATATAGTG+TGG - chr5_3:34938167-34938186 Msa0809090:CDS 45.0%
GAAGGGTGGGAATATAGTGT+GGG - chr5_3:34938168-34938187 Msa0809090:CDS 45.0%
!! TCATCACGGAGAGTATCATG+AGG - chr5_3:34938193-34938212 Msa0809090:CDS 45.0%
!! CATCACGGAGAGTATCATGA+GGG - chr5_3:34938194-34938213 Msa0809090:CDS 45.0%
! AAAGTATCCTCACCAGCCAA+TGG + chr5_3:34938228-34938247 None:intergenic 45.0%
ATTGGCTGGTGAGGATACTT+TGG - chr5_3:34938227-34938246 Msa0809090:intron 45.0%
TGGTGAGGATACTTTGGCAT+TGG - chr5_3:34938233-34938252 Msa0809090:intron 45.0%
!! GATACTTTGGCATTGGCTTG+TGG - chr5_3:34938240-34938259 Msa0809090:intron 45.0%
! GAACGACGCCGTTTAGGTTA+CGG + chr5_3:34933781-34933800 None:intergenic 50.0%
AAGTGTGAACGACGCCGTTT+AGG + chr5_3:34933787-34933806 None:intergenic 50.0%
ATGGGTGTTTCCCTGTGAGA+CGG + chr5_3:34934021-34934040 None:intergenic 50.0%
!! CGTACGTAGTGGATTGGAAC+TGG + chr5_3:34934094-34934113 None:intergenic 50.0%
TGCTGTCCCAAAAGCTCGTT+GGG - chr5_3:34934123-34934142 Msa0809090:CDS 50.0%
! CAATCCTCCCAACGAGCTTT+TGG + chr5_3:34934133-34934152 None:intergenic 50.0%
CAAAAGCTCGTTGGGAGGAT+TGG - chr5_3:34934131-34934150 Msa0809090:CDS 50.0%
TTGGAAACTCACGAACGAGC+CGG + chr5_3:34934207-34934226 None:intergenic 50.0%
TCGTTCGTGAGTTTCCAAGC+CGG - chr5_3:34934209-34934228 Msa0809090:CDS 50.0%
CCCGTTACACTTGTTTGTGC+TGG - chr5_3:34934238-34934257 Msa0809090:CDS 50.0%
CACCACGTGCTTAAACGATG+TGG - chr5_3:34934358-34934377 Msa0809090:CDS 50.0%
TCCCACATCGTTTAAGCACG+TGG + chr5_3:34934363-34934382 None:intergenic 50.0%
! TACGGTGCTGAGGATTTACC+CGG - chr5_3:34934421-34934440 Msa0809090:CDS 50.0%
ATATTTCGAACCACCGCCAC+CGG + chr5_3:34934443-34934462 None:intergenic 50.0%
CATGCAGAATGGTGAGGCTT+TGG - chr5_3:34934522-34934541 Msa0809090:CDS 50.0%
! AGGCTTTGGCTCCAGATCAT+GGG - chr5_3:34934536-34934555 Msa0809090:CDS 50.0%
AGATCATGGGTTTCCGGTGA+GGG - chr5_3:34934549-34934568 Msa0809090:CDS 50.0%
CCCGGAATAATAACCCTCAC+CGG + chr5_3:34934565-34934584 None:intergenic 50.0%
CCGGTGAGGGTTATTATTCC+GGG - chr5_3:34934562-34934581 Msa0809090:CDS 50.0%
!! TTCCGGGTTTTATCGGTGGA+AGG - chr5_3:34934578-34934597 Msa0809090:CDS 50.0%
!! GGGTTTTATCGGTGGAAGGA+TGG - chr5_3:34934582-34934601 Msa0809090:CDS 50.0%
TCGGTGGAAGGATGGTGAAA+TGG - chr5_3:34934590-34934609 Msa0809090:CDS 50.0%
GGATGGTGAAATGGCTCAAG+AGG - chr5_3:34934599-34934618 Msa0809090:CDS 50.0%
GTCTTTGTGGGAGAACAGGT+TGG - chr5_3:34935064-34935083 Msa0809090:intron 50.0%
! TTTGTGGGAGAACAGGTTGG+TGG - chr5_3:34935067-34935086 Msa0809090:intron 50.0%
GTGACATGGCGTCGTAATCA+CGG + chr5_3:34935133-34935152 None:intergenic 50.0%
GGCAAGATCTCATCGTGACA+TGG + chr5_3:34935147-34935166 None:intergenic 50.0%
CAGAGGGCTTATACGCTGAA+AGG - chr5_3:34935186-34935205 Msa0809090:CDS 50.0%
! GTGTGCTTTGTTATAGGGGG+TGG - chr5_3:34936689-34936708 Msa0809090:intron 50.0%
GACACGAGTCGAGGTAACAA+TGG - chr5_3:34936721-34936740 Msa0809090:intron 50.0%
CGAGTCGAGGTAACAATGGA+CGG - chr5_3:34936725-34936744 Msa0809090:intron 50.0%
CAATGGACGGTGGAGAAACA+TGG - chr5_3:34936738-34936757 Msa0809090:intron 50.0%
AACATGGCACGTGTGCACAT+TGG - chr5_3:34936754-34936773 Msa0809090:intron 50.0%
AGGCCCCACAAAGGAGAAAT+TGG - chr5_3:34937082-34937101 Msa0809090:intron 50.0%
CAACCAGGTAACCAATCAGG+TGG - chr5_3:34937127-34937146 Msa0809090:intron 50.0%
! CAACCACCTGATTGGTTACC+TGG + chr5_3:34937133-34937152 None:intergenic 50.0%
CAGGTAACCAATCAGGTGGT+TGG - chr5_3:34937131-34937150 Msa0809090:intron 50.0%
TTGCCATCCAACCACCTGAT+TGG + chr5_3:34937141-34937160 None:intergenic 50.0%
! GGGATGGTCTTTAAGGAAGC+GGG + chr5_3:34937332-34937351 None:intergenic 50.0%
! CGGGATGGTCTTTAAGGAAG+CGG + chr5_3:34937333-34937352 None:intergenic 50.0%
CGCTTCCTTAAAGACCATCC+CGG - chr5_3:34937331-34937350 Msa0809090:intron 50.0%
TTCCTTAAAGACCATCCCGG+TGG - chr5_3:34937334-34937353 Msa0809090:intron 50.0%
!! AATCGGCGAACTTGTTGCCA+CGG - chr5_3:34937453-34937472 Msa0809090:CDS 50.0%
ACTTCAAAAACGTGCACCCG+AGG - chr5_3:34937794-34937813 Msa0809090:CDS 50.0%
CCAATGTCGAGCCAATAGTG+AGG + chr5_3:34937858-34937877 None:intergenic 50.0%
!! CCTCACTATTGGCTCGACAT+TGG - chr5_3:34937855-34937874 Msa0809090:CDS 50.0%
ATTGGAAGTAAAAGGCCCCG+TGG - chr5_3:34937873-34937892 Msa0809090:CDS 50.0%
TTGGAAGTAAAAGGCCCCGT+GGG - chr5_3:34937874-34937893 Msa0809090:CDS 50.0%
GATACTCAATGTGTCCCACG+GGG + chr5_3:34937891-34937910 None:intergenic 50.0%
!!! ACATTTTTAGCCGGTGGGAC+CGG - chr5_3:34937964-34937983 Msa0809090:CDS 50.0%
TGTTTATGCAAACCGGACGG+AGG - chr5_3:34938056-34938075 Msa0809090:CDS 50.0%
! CATGAGGGAGCATGTTCCAT+TGG - chr5_3:34938209-34938228 Msa0809090:CDS 50.0%
! GGAAACCCGGTTTCAGGTCA+TGG + chr5_3:34933832-34933851 None:intergenic 55.0%
TGACCTGAAACCGGGTTTCC+CGG - chr5_3:34933832-34933851 Msa0809090:CDS 55.0%
TTACCGGGAAACCCGGTTTC+AGG + chr5_3:34933838-34933857 None:intergenic 55.0%
TCTTCGTCGTCGCTGCTGAA+GGG + chr5_3:34933869-34933888 None:intergenic 55.0%
ATCTTCGTCGTCGCTGCTGA+AGG + chr5_3:34933870-34933889 None:intergenic 55.0%
CTAACGTTCCTTCGTCGCGT+GGG + chr5_3:34933967-34933986 None:intergenic 55.0%
TCTAACGTTCCTTCGTCGCG+TGG + chr5_3:34933968-34933987 None:intergenic 55.0%
GGTCACACGAAACGCTTCCA+TGG - chr5_3:34933994-34934013 Msa0809090:CDS 55.0%
CTTCCATGGTCCGTCTCACA+GGG - chr5_3:34934008-34934027 Msa0809090:CDS 55.0%
TTTCCCTGTGAGACGGACCA+TGG + chr5_3:34934014-34934033 None:intergenic 55.0%
AACCGTGGTGCATGAGACGT+GGG + chr5_3:34934063-34934082 None:intergenic 55.0%
AAACCGTGGTGCATGAGACG+TGG + chr5_3:34934064-34934083 None:intergenic 55.0%
CACCGTGGTTACGTACGTAG+TGG + chr5_3:34934105-34934124 None:intergenic 55.0%
GTGCTGTCCCAAAAGCTCGT+TGG - chr5_3:34934122-34934141 Msa0809090:CDS 55.0%
TGTCCCAAAAGCTCGTTGGG+AGG - chr5_3:34934126-34934145 Msa0809090:CDS 55.0%
AAACCCAACCCGGTTCACCA+TGG - chr5_3:34934180-34934199 Msa0809090:CDS 55.0%
CGTTCGTGAGTTTCCAAGCC+GGG - chr5_3:34934210-34934229 Msa0809090:CDS 55.0%
!! GTAACGGGTAATTCCCGGCT+TGG + chr5_3:34934226-34934245 None:intergenic 55.0%
!! CTGCTGTTTCCAACTCCGTG+TGG - chr5_3:34934320-34934339 Msa0809090:CDS 55.0%
TATTTCGAACCACCGCCACC+GGG + chr5_3:34934442-34934461 None:intergenic 55.0%
! GGTGGCGGTGGTTCGAAATA+TGG - chr5_3:34934442-34934461 Msa0809090:CDS 55.0%
! GAGGCTTTGGCTCCAGATCA+TGG - chr5_3:34934535-34934554 Msa0809090:CDS 55.0%
GGCTCCAGATCATGGGTTTC+CGG - chr5_3:34934543-34934562 Msa0809090:CDS 55.0%
CTCACCGGAAACCCATGATC+TGG + chr5_3:34934550-34934569 None:intergenic 55.0%
CAGATCATGGGTTTCCGGTG+AGG - chr5_3:34934548-34934567 Msa0809090:CDS 55.0%
GTCGAGGTAACAATGGACGG+TGG - chr5_3:34936728-34936747 Msa0809090:intron 55.0%
TGCTGTACGAGCATGGGATG+AGG - chr5_3:34936874-34936893 Msa0809090:CDS 55.0%
AACGTGTGTAGGCCCCACAA+AGG - chr5_3:34937073-34937092 Msa0809090:intron 55.0%
TGCAGTCGTAGACATTGCCG+TGG + chr5_3:34937309-34937328 None:intergenic 55.0%
AGCCACCGGGATGGTCTTTA+AGG + chr5_3:34937339-34937358 None:intergenic 55.0%
TAAAGACCATCCCGGTGGCT+CGG - chr5_3:34937339-34937358 Msa0809090:intron 55.0%
!! ATCGGCGAACTTGTTGCCAC+GGG - chr5_3:34937454-34937473 Msa0809090:CDS 55.0%
! TGTTGCCACGGGTTACACCT+CGG - chr5_3:34937465-34937484 Msa0809090:CDS 55.0%
TGAATCCGAGGTGTAACCCG+TGG + chr5_3:34937473-34937492 None:intergenic 55.0%
GTGCACCCGAGGTTTCCTAA+TGG - chr5_3:34937805-34937824 Msa0809090:intron 55.0%
CACCCGAGGTTTCCTAATGG+TGG - chr5_3:34937808-34937827 Msa0809090:intron 55.0%
! AGGGAGCATGTTCCATTGGC+TGG - chr5_3:34938213-34938232 Msa0809090:CDS 55.0%
! GCATGTTCCATTGGCTGGTG+AGG - chr5_3:34938218-34938237 Msa0809090:intron 55.0%
CGACGGTTCAACTTCCGCGT+TGG + chr5_3:34933936-34933955 None:intergenic 60.0%
TCGCGTGGGTCGAGAATCGA+CGG + chr5_3:34933953-34933972 None:intergenic 60.0%
ATTCTCGACCCACGCGACGA+AGG - chr5_3:34933956-34933975 Msa0809090:CDS 60.0%
GCTTCCATGGTCCGTCTCAC+AGG - chr5_3:34934007-34934026 Msa0809090:CDS 60.0%
TGCATGAGACGTGGGAGTGG+TGG + chr5_3:34934055-34934074 None:intergenic 60.0%
TGGTGCATGAGACGTGGGAG+TGG + chr5_3:34934058-34934077 None:intergenic 60.0%
CTCCCACGTCTCATGCACCA+CGG - chr5_3:34934058-34934077 Msa0809090:CDS 60.0%
!!! GAGCTTTTGGGACAGCACCG+TGG + chr5_3:34934120-34934139 None:intergenic 60.0%
GGTCCATGGTGAACCGGGTT+GGG + chr5_3:34934186-34934205 None:intergenic 60.0%
CAACCCGGTTCACCATGGAC+CGG - chr5_3:34934185-34934204 Msa0809090:CDS 60.0%
GTTTCCAACTCCGTGTGGCG+CGG - chr5_3:34934325-34934344 Msa0809090:CDS 60.0%
! GGTGCTGAGGATTTACCCGG+TGG - chr5_3:34934424-34934443 Msa0809090:CDS 60.0%
GCTGAGGATTTACCCGGTGG+CGG - chr5_3:34934427-34934446 Msa0809090:CDS 60.0%
AAGATGCTGTCCGAGCCACC+GGG + chr5_3:34937352-34937371 None:intergenic 60.0%
CAAGATGCTGTCCGAGCCAC+CGG + chr5_3:34937353-34937372 None:intergenic 60.0%
CGGTCCATGGTGAACCGGGT+TGG + chr5_3:34934187-34934206 None:intergenic 65.0%
GAGCCGGTCCATGGTGAACC+GGG + chr5_3:34934191-34934210 None:intergenic 65.0%
CGAGCCGGTCCATGGTGAAC+CGG + chr5_3:34934192-34934211 None:intergenic 65.0%
CTCACGAACGAGCCGGTCCA+TGG + chr5_3:34934200-34934219 None:intergenic 65.0%
! GAGGATTTACCCGGTGGCGG+TGG - chr5_3:34934430-34934449 Msa0809090:CDS 65.0%
CGGTGTGATTCCGGTCCCAC+CGG + chr5_3:34937977-34937996 None:intergenic 65.0%
CGGTGGGACCGGAATCACAC+CGG - chr5_3:34937975-34937994 Msa0809090:CDS 65.0%
AACGCCGCGCCACACGGAGT+TGG + chr5_3:34934332-34934351 None:intergenic 70.0%
CAGCGAAACGCCGCGCCACA+CGG + chr5_3:34934338-34934357 None:intergenic 70.0%
TGCTGTCCGAGCCACCGGGA+TGG + chr5_3:34937348-34937367 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 34933749 34938347 34933749 ID=Msa0809090;Name=Msa0809090
chr5_3 mRNA 34933749 34938347 34933749 ID=Msa0809090-mRNA-1;Parent=Msa0809090;Name=Msa0809090-mRNA-1;_AED=0.05;_eAED=0.07;_QI=0|0.12|0|1|0.37|0.22|9|0|854
chr5_3 exon 34938251 34938347 34938251 ID=Msa0809090-mRNA-1:exon:11065;Parent=Msa0809090-mRNA-1
chr5_3 exon 34938017 34938232 34938017 ID=Msa0809090-mRNA-1:exon:11064;Parent=Msa0809090-mRNA-1
chr5_3 exon 34937828 34938001 34937828 ID=Msa0809090-mRNA-1:exon:11063;Parent=Msa0809090-mRNA-1
chr5_3 exon 34937589 34937821 34937589 ID=Msa0809090-mRNA-1:exon:11062;Parent=Msa0809090-mRNA-1
chr5_3 exon 34937378 34937567 34937378 ID=Msa0809090-mRNA-1:exon:11061;Parent=Msa0809090-mRNA-1
chr5_3 exon 34936874 34937014 34936874 ID=Msa0809090-mRNA-1:exon:11060;Parent=Msa0809090-mRNA-1
chr5_3 exon 34935159 34935391 34935159 ID=Msa0809090-mRNA-1:exon:11059;Parent=Msa0809090-mRNA-1
chr5_3 exon 34935017 34935033 34935017 ID=Msa0809090-mRNA-1:exon:11058;Parent=Msa0809090-mRNA-1
chr5_3 exon 34933749 34935012 34933749 ID=Msa0809090-mRNA-1:exon:11057;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34938251 34938347 34938251 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34938017 34938232 34938017 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34937828 34938001 34937828 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34937589 34937821 34937589 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34937378 34937567 34937378 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34936874 34937014 34936874 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34935159 34935391 34935159 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34935017 34935033 34935017 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
chr5_3 CDS 34933749 34935012 34933749 ID=Msa0809090-mRNA-1:cds;Parent=Msa0809090-mRNA-1
Gene Sequence

>Msa0809090

ATGGCAGCTTCAGTTGATAACCGTCAATTCCGTAACCTAAACGGCGTCGTTCACACTTTCAATCCCAGCAACAATTTCATCCATGACCTGAAACCGGATCCCTTCAGCAGCGACGACGAAGATGAAAACGACCACGCATCGAATCTCCATGAATTAATCCGAAAAACCAACGCGGAAGTTGAACCGTCGATTCTCGACCCACGCGACGAAGGAACGTTAGATAACTGGGTCACACGAAACGCTTCCATGGTCCGTCTCACAGGGAAACACCCATTCAATTCAGAACCACCACTCCCACGTCTCATGCACCACGTTCCAATCCACTACGTACGTAACCACGGTGCTGTCCCAAAAGCTCGTTGGGAGGATTGGACCGTTGAAGTAACCGGTTTAGTTAAAAACCCAACCCGGTTCACCATGGACCGGCTCGTTCGTGAGTTTCCAAGCCGGGAATTACCCGTTACACTTGTTTGTGCTGGTAACAGACAACAAAACATGGTGAAACAAAGCGTTGGTTTTAACTGGGGTGCTGCTGCTGTTTCCAACTCCGTGTGGCGCGGCGTTTCGCTGCACCACGTGCTTAAACGATGTGGGATTCAAACACGTTCTAAGGGTGCTGTTCATGTTTGTTTTTACGGTGCTGAGGATTTACCCGGTGGCGGTGGTTCGAAATATGGAACAAGTATTAGGAGGGAAATTGCTATGGATCCTTCTCGTGATAATGGTGAGGCTTTGGCTCCAGATCATGGGTTTCCGGTGAGGGTTATTATTCCGGGTTTTATCGGTGGAAGGATGGTGAAATGGCTCAAGAGGATTGTTGTTACTACTGATGAATGTGATGGTCATTATCATTATAAGGATAATAGAGTTCTTCCTTCTCATGTTGATGCAGAACAAGCCAATGAAGAAGGTTGGTGGTACAAGCCAGAATATATAATCAATGAGCTGAACATAAACTCCGTGATTACGACGCCATGTCACGATGAGATCTTGCCTATAAACTCATGGACTACGCAGAGGGCTTATACGCTGAAAGGTTATTCATATTCAGGGGGTGGTAGAAAAGTGACACGAGTCGAGGTAACAATGGACGGTGGAGAAACATGGCACGTGTGCACATTGGACCATCCAGAAAAACCAACAAAATATGGAAAATATTGGTGTTGGTGCTTTTGGTCTCTAGAAGTTGAGGTGTTAGACCTTCTTGGTACCAAAGAGATTGCTGTACGAGCATGGGATGAGGCACTCAACACCCAACCTGAAAATCCTATTTGGAATGTTATGGGTAAAAACAAACGTGTGCCCCACAAAGGAGAAATTGGAATAGTGTTTGAACACCCAACACAACCAGGTAACCAATCAGGTGGTTGGATGGCAAAAGAAAGACACTTAGAAAGATCACAAGAAACCAAACCAATTCTCAAGAAAAGTATCTCTACTCCATTCATGAACACATCTTCAAAAACATACTCACTCTCTGAAGTTAAAAAACACAAAACCCTTGATTCTACTTGGATCATCGTCCACGGCAATGTCTACGACTGCACCCGCTTCCTTAAAGACCATCCCGGTGGCTCGGACAGCATCTTGATCAATGCCGGCACTGATTGTACCGATGAATTCGAAGCTATCCATTCGGACAAAGCAAAGAAATTGCTCGAAGATTATAGAATCGGCGAACTTGTTGCCACGGGTTACACCTCGGATTCATCGTCACCAAATAACTCCATGCATGGAAATACTGAATTTACCCATCTTGCTCCTATTAAAGAAATCATGGCTCTTAACCCACGTGAGAAAATCCCATGCAAGCTCATTGCAAAAACCTCAATTTCACATGATGTAAGACTTTTCCGTTTTGCATTACCCTCTGAAGATCAATTATTGGGACTACCCGTCGGGAAACACATTTTCCTATGTGTTACCGTCGATGGAAAATTGGTCATGCGAGCTTATACGCCAACAAGTAGCGTCGATGAAATTGGGTATTTTGAATTAGTTGTCAAAATTTACTTCAAAAACGTGCACCCGAGGTTTCCTAATGGTGGAATCATGTCTCAATATTTAGACTCCCTCACTATTGGCTCGACATTGGAAGTAAAAGGCCCCGTGGGACACATTGAGTATCTTGGTAGAGGAAATTTTTCGGTCCACGGGAAACAAAGATTTGCAAAGAAACTAACATTTTTAGCCGGTGGGACCGGAATCACACCGGTTTATCAAGTGGCGAACTCGATTTTGAAGGATGCCAATGATCAAACTGAAATGTATGTTGTTTATGCAAACCGGACGGAGGATGATATATTGTTGAGGGAAGAGTTAGATGAGTGGGCAAAGAATTACAGTGATAGGTTCAAGATTTGGTATGTTGTGGAAAATGCAAATGAAGGGTGGGAATATAGTGTGGGATTCATCACGGAGAGTATCATGAGGGAGCATGTTCCATTGGCTGGTGAGGATACTTTGGCATTGGCTTGTGGGCCACCACCTATGATTCAATTTGCTGTGCAACCTAATTTGGAAAAGATGGGGTATGATATTAAGAAGGATTTGCTTGTGTTCTAG
Protein sequence

>Msa0809090

MAASVDNRQFRNLNGVVHTFNPSNNFIHDLKPDPFSSDDEDENDHASNLHELIRKTNAEVEPSILDPRDEGTLDNWVTRNASMVRLTGKHPFNSEPPLPRLMHHVPIHYVRNHGAVPKARWEDWTVEVTGLVKNPTRFTMDRLVREFPSRELPVTLVCAGNRQQNMVKQSVGFNWGAAAVSNSVWRGVSLHHVLKRCGIQTRSKGAVHVCFYGAEDLPGGGGSKYGTSIRREIAMDPSRDNGEALAPDHGFPVRVIIPGFIGGRMVKWLKRIVVTTDECDGHYHYKDNRVLPSHVDAEQANEEGWWYKPEYIINELNINSVITTPCHDEILPINSWTTQRAYTLKGYSYSGGGRKVTRVEVTMDGGETWHVCTLDHPEKPTKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEALNTQPENPIWNVMGKNKRVPHKGEIGIVFEHPTQPGNQSGGWMAKERHLERSQETKPILKKSISTPFMNTSSKTYSLSEVKKHKTLDSTWIIVHGNVYDCTRFLKDHPGGSDSILINAGTDCTDEFEAIHSDKAKKLLEDYRIGELVATGYTSDSSSPNNSMHGNTEFTHLAPIKEIMALNPREKIPCKLIAKTSISHDVRLFRFALPSEDQLLGLPVGKHIFLCVTVDGKLVMRAYTPTSSVDEIGYFELVVKIYFKNVHPRFPNGGIMSQYLDSLTIGSTLEVKGPVGHIEYLGRGNFSVHGKQRFAKKLTFLAGGTGITPVYQVANSILKDANDQTEMYVVYANRTEDDILLREELDEWAKNYSDRFKIWYVVENANEGWEYSVGFITESIMREHVPLAGEDTLALACGPPPMIQFAVQPNLEKMGYDIKKDLLVF*