AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721330 MtrunA17_Chr5g0424491 98.276 522 9 0 2 523 363 884 0.0 1068
Msa0721330 MtrunA17_Chr3g0115151 73.684 532 122 5 6 523 311 838 0.0 829
Msa0721330 MtrunA17_Chr3g0115131 68.321 524 152 6 6 523 361 876 0.0 747
Msa0721330 MtrunA17_Chr7g0254371 41.221 262 131 6 255 514 30 270 1.25e-57 193
Msa0721330 MtrunA17_Chr3g0118791 38.603 272 144 5 245 514 20 270 3.25e-55 186
Msa0721330 MtrunA17_Chr8g0355241 39.921 253 131 5 263 514 55 287 2.21e-53 182
Msa0721330 MtrunA17_Chr4g0063451 35.556 270 145 8 239 502 47 293 1.95e-41 151
Msa0721330 MtrunA17_Chr5g0419651 48.515 101 44 2 152 251 1 94 8.62e-21 88.2
Msa0721330 MtrunA17_Chr8g0346311 43.902 82 45 1 152 232 1 82 2.51e-16 75.9
Msa0721330 MtrunA17_Chr4g0010061 32.479 117 77 2 152 266 14 130 3.09e-16 75.9
Msa0721330 MtrunA17_Chr3g0127451 38.750 80 48 1 152 230 1 80 1.91e-15 73.2
Msa0721330 MtrunA17_Chr7g0276081 40.506 79 46 1 153 230 3 81 2.11e-15 73.6
Msa0721330 MtrunA17_Chr6g0486891 40.230 87 50 2 145 230 32 117 5.34e-13 65.9
Msa0721330 MtrunA17_Chr3g0134591 28.571 140 81 4 155 292 3 125 1.11e-12 65.9
Msa0721330 MtrunA17_Chr1g0151391 33.333 123 69 2 138 260 4 113 1.05e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721330 AT1G37130.1 75.706 531 119 4 2 523 388 917 0.0 840
Msa0721330 AT1G77760.1 72.881 531 131 5 2 523 391 917 0.0 832
Msa0721330 AT5G17770.1 40.310 258 131 6 259 514 37 273 2.63e-55 187
Msa0721330 AT5G20080.1 36.000 250 125 6 263 502 72 296 1.69e-42 154
Msa0721330 AT5G48810.1 45.000 80 43 1 152 230 1 80 1.63e-19 85.5
Msa0721330 AT2G32720.1 37.607 117 71 2 152 266 1 117 1.86e-19 85.1
Msa0721330 AT1G26340.1 46.250 80 42 1 152 230 1 80 1.54e-17 79.7
Msa0721330 AT5G53560.1 42.500 80 45 1 152 230 1 80 1.87e-16 76.6
Msa0721330 AT1G60660.1 40.000 105 56 4 128 230 21 120 2.37e-13 67.4
Msa0721330 AT2G46650.1 41.667 72 41 1 160 230 6 77 5.74e-13 66.6
Msa0721330 AT2G32720.2 35.043 117 74 2 152 266 1 117 2.25e-11 62.0

Find 157 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAACCTGAAAATCTTATT+TGG 0.157360 5_1:-17839781 Msa0721330:CDS
ATTTGCTGTGCAGCCTAATT+TGG 0.165289 5_1:-17837501 Msa0721330:CDS
GAAGGATTTGCTTGTGTTCT+AGG 0.205216 5_1:-17837456 Msa0721330:exon
GAGCCATGATTTCTTTAATA+GGG 0.224928 5_1:+17838239 None:intergenic
TTTCCATGCATGGAGTTATT+TGG 0.238570 5_1:+17838283 None:intergenic
ACCCTCTGAAGACCAATTAT+TGG 0.249248 5_1:-17838134 Msa0721330:CDS
AATATTGGTGTTGGTGCTTT+TGG 0.255382 5_1:-17839880 Msa0721330:CDS
ACAAGTAGCGTCGATGAAAT+TGG 0.269252 5_1:-17838037 Msa0721330:CDS
AGCCACCGGGATGGTCTTTA+AGG 0.271475 5_1:+17838446 None:intergenic
TGGTGGTGTACTTTGTTATA+GGG 0.279347 5_1:-17840003 Msa0721330:CDS
AGAGCCATGATTTCTTTAAT+AGG 0.296400 5_1:+17838238 None:intergenic
GTTGAGGTGCTGGACCTTCT+TGG 0.311875 5_1:-17839848 Msa0721330:CDS
TTGATAAACCGGTGTGATTC+CGG 0.315993 5_1:+17837799 None:intergenic
AAATCTTATTTGGAATGTTA+TGG 0.318830 5_1:-17839771 Msa0721330:intron
GTTATTATTTGTTTGCAGTT+TGG 0.321557 5_1:-17837367 Msa0721330:three_prime_UTR
TTGGTGGTGTACTTTGTTAT+AGG 0.323116 5_1:-17840004 Msa0721330:CDS
CCCTCTGAAGACCAATTATT+GGG 0.352866 5_1:-17838133 Msa0721330:CDS
CAACAAAATATGGAAAATAT+TGG 0.352911 5_1:-17839895 Msa0721330:CDS
TATTTAGACTCCCTCACTAT+TGG 0.354916 5_1:-17837938 Msa0721330:CDS
TATGCCAATTTCTCCTTTGT+GGG 0.358843 5_1:+17838696 None:intergenic
GGCTCGACATTGGAAGTAAA+AGG 0.368116 5_1:-17837917 Msa0721330:CDS
CGACGGGTAGTCCCAATAAT+TGG 0.370066 5_1:+17838122 None:intergenic
ACAGTGATAGGTTCAAGATT+TGG 0.371731 5_1:-17837658 Msa0721330:CDS
ATACTTTGGCATTGGCTTGT+GGG 0.376074 5_1:-17837541 Msa0721330:CDS
TGCTCGTACAGCAATCTCTT+TGG 0.380214 5_1:+17839823 None:intergenic
GTCTCTGGAAGTTGAGGTGC+TGG 0.384295 5_1:-17839858 Msa0721330:CDS
TGTTACCGTCGATGGAAAAT+TGG 0.384736 5_1:-17838080 Msa0721330:CDS
AGGCCCCACAAAGGAGAAAT+TGG 0.387604 5_1:-17838700 Msa0721330:CDS
GAGCAATTTCTTCGCTTTGT+CGG 0.388009 5_1:+17838363 None:intergenic
ATTTCATCGACGCTACTTGT+TGG 0.388753 5_1:+17838040 None:intergenic
TGGTTACTTCATTCTTTGTA+AGG 0.389070 5_1:-17837347 Msa0721330:three_prime_UTR
CTATGCCAATTTCTCCTTTG+TGG 0.404202 5_1:+17838695 None:intergenic
CTCTTTGCTAGCTTATGATC+AGG 0.404547 5_1:-17837288 Msa0721330:three_prime_UTR
TGATGAACAACTGTTGGTTC+AGG 0.404730 5_1:-17838741 Msa0721330:CDS
CAACCACCTGATTGGTTACC+TGG 0.409897 5_1:+17838652 None:intergenic
ATACATTTCAGTTTGATCAT+TGG 0.411130 5_1:+17837751 None:intergenic
GATCAGGCTTTGATGTAGTT+AGG 0.420162 5_1:-17837272 Msa0721330:three_prime_UTR
TTGCCATCCAACCACCTGAT+TGG 0.423313 5_1:+17838644 None:intergenic
TGAGACATGATTCCACCATT+AGG 0.433961 5_1:+17837962 None:intergenic
TTTGAAGATGTGTTCATGAA+TGG 0.441590 5_1:+17838559 None:intergenic
ATTGGTTACCTGGTTGTGTT+GGG 0.444285 5_1:+17838662 None:intergenic
GGGCAAAGAATTACAGTGAT+AGG 0.447955 5_1:-17837670 Msa0721330:CDS
ATTGGCTGGTGAGGATACTT+TGG 0.450569 5_1:-17837555 Msa0721330:CDS
GCAGCCTAATTTGGAAAAGA+TGG 0.452644 5_1:-17837492 Msa0721330:CDS
CAAGTAGCGTCGATGAAATT+GGG 0.454166 5_1:-17838036 Msa0721330:CDS
GATACTTTGGCATTGGCTTG+TGG 0.455319 5_1:-17837542 Msa0721330:CDS
GATTGGTTACCTGGTTGTGT+TGG 0.458076 5_1:+17838661 None:intergenic
TGTATGTTGTTTATGCAAAC+CGG 0.462216 5_1:-17837733 Msa0721330:CDS
CAAGATGCTGTCCGAGCCAC+CGG 0.463724 5_1:+17838432 None:intergenic
GTTCAAGATTTGGTATGTTG+TGG 0.467229 5_1:-17837648 Msa0721330:CDS
AAGGATTTGCTTGTGTTCTA+GGG 0.467291 5_1:-17837455 Msa0721330:exon
ACAAAACCCTTGATTCTGCT+TGG 0.467688 5_1:-17838507 Msa0721330:CDS
TCTTACATCATGTGAAATTG+AGG 0.468587 5_1:+17838174 None:intergenic
CGATGATCCAAGCAGAATCA+AGG 0.472518 5_1:+17838500 None:intergenic
TGCACAGCAAATTGAATCAT+AGG 0.474304 5_1:+17837512 None:intergenic
TGGTGAGGATACTTTGGCAT+TGG 0.478642 5_1:-17837549 Msa0721330:CDS
TGCCCCTATTAAAGAAATCA+TGG 0.479375 5_1:-17838242 Msa0721330:CDS
TTCCTATGTGTTACCGTCGA+TGG 0.479701 5_1:-17838088 Msa0721330:CDS
GAGTTCGCCACTTGATAAAC+CGG 0.483104 5_1:+17837788 None:intergenic
CAGCCTAATTTGGAAAAGAT+GGG 0.502205 5_1:-17837491 Msa0721330:CDS
ACACAACCAGGTAACCAATC+AGG 0.502603 5_1:-17838658 Msa0721330:CDS
TTGCTCGAAGATTATAGAAT+CGG 0.504204 5_1:-17838346 Msa0721330:CDS
CAAGTAATAGATATTGTGTA+TGG 0.504701 5_1:-17837432 Msa0721330:three_prime_UTR
AGGAAAATGTGTTTCCCGAC+GGG 0.508028 5_1:+17838106 None:intergenic
GGAGGATGATATATTGTTGA+GGG 0.508311 5_1:-17837708 Msa0721330:CDS
AATTATTGGGACTACCCGTC+GGG 0.511214 5_1:-17838120 Msa0721330:CDS
GTGGGACACATTGAGTATCT+TGG 0.519227 5_1:-17837890 Msa0721330:CDS
GGTGGTGTACTTTGTTATAG+GGG 0.519848 5_1:-17840002 Msa0721330:CDS
TGAAGGGTGGGAATATAGTG+TGG 0.521449 5_1:-17837615 Msa0721330:CDS
GACAGCATCTTGATCAATGC+CGG 0.522000 5_1:-17838421 Msa0721330:CDS
GAGGGAAGAGTTAGATGAGT+GGG 0.523109 5_1:-17837690 Msa0721330:CDS
CAATCTCTTTGGTTCCAAGA+AGG 0.524807 5_1:+17839834 None:intergenic
ACAATATATCATCCTCCGTC+CGG 0.525027 5_1:+17837714 None:intergenic
AAGAGATTGCTGTACGAGCA+TGG 0.526881 5_1:-17839820 Msa0721330:CDS
CCTCACTATTGGCTCGACAT+TGG 0.531693 5_1:-17837927 Msa0721330:CDS
CACATTGAGTATCTTGGTAG+AGG 0.535337 5_1:-17837884 Msa0721330:CDS
CATGAGGGAGCATGTTCCAT+TGG 0.536462 5_1:-17837573 Msa0721330:CDS
CGGTGTGATTCCGGTCCCAC+CGG 0.536478 5_1:+17837808 None:intergenic
AGGGAGCATGTTCCATTGGC+TGG 0.536717 5_1:-17837569 Msa0721330:CDS
CCCAATAATTGGTCTTCAGA+GGG 0.540053 5_1:+17838133 None:intergenic
CAGGTAACCAATCAGGTGGT+TGG 0.540183 5_1:-17838651 Msa0721330:CDS
AGCCATGATTTCTTTAATAG+GGG 0.540904 5_1:+17838240 None:intergenic
CTTCAGAGGGTAATGCAAAA+CGG 0.542586 5_1:+17838146 None:intergenic
AGAGATTGCTGTACGAGCAT+GGG 0.546335 5_1:-17839819 Msa0721330:CDS
GTTGTGGAAAATGCAAATGA+AGG 0.547180 5_1:-17837632 Msa0721330:CDS
TAAAGACCATCCCGGTGGCT+CGG 0.548191 5_1:-17838443 Msa0721330:CDS
ATCGGTGAACTTGTTGCCAC+GGG 0.548351 5_1:-17838328 Msa0721330:CDS
ATGCCAATTTCTCCTTTGTG+GGG 0.549386 5_1:+17838697 None:intergenic
CGGGATGGTCTTTAAGGAAG+CGG 0.550156 5_1:+17838452 None:intergenic
GATGGGGTATGATATTAAGA+AGG 0.550460 5_1:-17837474 Msa0721330:CDS
AAACTCAGAATTTCCATGCA+TGG 0.555075 5_1:+17838273 None:intergenic
GGGATGGTCTTTAAGGAAGC+GGG 0.557622 5_1:+17838453 None:intergenic
GTGCACCCGAGGTTTCCTAA+TGG 0.557789 5_1:-17837977 Msa0721330:CDS
TTCCATCGACGGTAACACAT+AGG 0.557938 5_1:+17838086 None:intergenic
AGGGCATGATGAACAACTGT+TGG 0.559624 5_1:-17838747 Msa0721330:CDS
TGCTGTACGAGCATGGGATG+AGG 0.559709 5_1:-17839813 Msa0721330:CDS
ATTTCTTCGCTTTGTCGGAG+TGG 0.561134 5_1:+17838368 None:intergenic
AGATACTCAATGTGTCCCAC+GGG 0.561482 5_1:+17837893 None:intergenic
TCACCAAATAACTCCATGCA+TGG 0.562432 5_1:-17838286 Msa0721330:CDS
GATGAACAACTGTTGGTTCA+GGG 0.562468 5_1:-17838740 Msa0721330:CDS
GTGGTGTACTTTGTTATAGG+GGG 0.564029 5_1:-17840001 Msa0721330:CDS
TAACCAATCAGGTGGTTGGA+TGG 0.566160 5_1:-17838647 Msa0721330:CDS
TGCTGTCCGAGCCACCGGGA+TGG 0.569293 5_1:+17838437 None:intergenic
CACCCGAGGTTTCCTAATGG+TGG 0.570682 5_1:-17837974 Msa0721330:CDS
TTCCACCATTAGGAAACCTC+GGG 0.572666 5_1:+17837972 None:intergenic
AATCGGTGAACTTGTTGCCA+CGG 0.573584 5_1:-17838329 Msa0721330:CDS
GCATGTTCCATTGGCTGGTG+AGG 0.575892 5_1:-17837564 Msa0721330:CDS
GCAAATTGAATCATAGGTGG+TGG 0.579707 5_1:+17837518 None:intergenic
TCCCAATAATTGGTCTTCAG+AGG 0.582671 5_1:+17838132 None:intergenic
CAATGGACGGTGGAGAAACA+TGG 0.583710 5_1:-17839949 Msa0721330:CDS
GAAGGGTGGGAATATAGTGT+GGG 0.585437 5_1:-17837614 Msa0721330:CDS
TTCATCGGTACAATCAGTGC+CGG 0.586097 5_1:+17838402 None:intergenic
AAAGTATCCTCACCAGCCAA+TGG 0.589581 5_1:+17837557 None:intergenic
CAATTATTGGGACTACCCGT+CGG 0.590810 5_1:-17838121 Msa0721330:CDS
CGGAGGATGATATATTGTTG+AGG 0.590840 5_1:-17837709 Msa0721330:CDS
GGGTGAAAACAAACGTGTGT+AGG 0.593200 5_1:-17838720 Msa0721330:CDS
TGGAAAATGCAAATGAAGGG+TGG 0.596804 5_1:-17837628 Msa0721330:CDS
GTGGATAGCTTCGAATTCAT+CGG 0.602979 5_1:+17838387 None:intergenic
TTTGAACACCCAACACAACC+AGG 0.604927 5_1:-17838670 Msa0721330:CDS
AACATGGCACGTGTGCACAT+TGG 0.605465 5_1:-17839933 Msa0721330:CDS
CGCTTCCTTAAAGACCATCC+CGG 0.607488 5_1:-17838451 Msa0721330:CDS
AAGATACTCAATGTGTCCCA+CGG 0.608335 5_1:+17837892 None:intergenic
TGAGGGAAGAGTTAGATGAG+TGG 0.610132 5_1:-17837691 Msa0721330:CDS
AATATGGAAAATATTGGTGT+TGG 0.612385 5_1:-17839889 Msa0721330:CDS
ATTCCACCATTAGGAAACCT+CGG 0.616676 5_1:+17837971 None:intergenic
TGTTGCCACGGGCTACACCT+CGG 0.618003 5_1:-17838317 Msa0721330:CDS
CGAGTTGAGGTAACAATGGA+CGG 0.622477 5_1:-17839962 Msa0721330:CDS
TAGGAAAATGTGTTTCCCGA+CGG 0.623184 5_1:+17838105 None:intergenic
CAATGTCGAGCCAATAGTGA+GGG 0.626618 5_1:+17837928 None:intergenic
TCTGCTTGGATCATCGTCCA+CGG 0.632854 5_1:-17838493 Msa0721330:CDS
AATCACACCGGTTTATCAAG+TGG 0.633560 5_1:-17837795 Msa0721330:CDS
TGCAGTCGTAGACATTGCCG+TGG 0.636639 5_1:+17838476 None:intergenic
GACACGAGTTGAGGTAACAA+TGG 0.638170 5_1:-17839966 Msa0721330:CDS
AAGATGCTGTCCGAGCCACC+GGG 0.638298 5_1:+17838433 None:intergenic
GATGATCCAAGCAGAATCAA+GGG 0.641609 5_1:+17838501 None:intergenic
TGGTTGAAAACTGACATTGG+TGG 0.645031 5_1:-17840020 None:intergenic
TAGAAAAGTGACACGAGTTG+AGG 0.647638 5_1:-17839975 Msa0721330:CDS
CCAATGTCGAGCCAATAGTG+AGG 0.648223 5_1:+17837927 None:intergenic
GGAAAATGCAAATGAAGGGT+GGG 0.649053 5_1:-17837627 Msa0721330:CDS
TTGTGGAAAATGCAAATGAA+GGG 0.650089 5_1:-17837631 Msa0721330:CDS
ATTTGGTGACGATGAATCCG+AGG 0.661125 5_1:+17838300 None:intergenic
ATATAGTGTGGGATTCATCA+CGG 0.661845 5_1:-17837603 Msa0721330:CDS
TGAATCCGAGGTGTAGCCCG+TGG 0.667858 5_1:+17838312 None:intergenic
AGCCTAATTTGGAAAAGATG+GGG 0.670647 5_1:-17837490 Msa0721330:CDS
TTGGAAGTAAAAGGCCCCGT+GGG 0.673786 5_1:-17837908 Msa0721330:CDS
CGGTGGGACCGGAATCACAC+CGG 0.678093 5_1:-17837807 Msa0721330:CDS
TGTTGTTTATGCAAACCGGA+CGG 0.678346 5_1:-17837729 Msa0721330:CDS
AACGTGTGTAGGCCCCACAA+AGG 0.681655 5_1:-17838709 Msa0721330:CDS
TGTTTATGCAAACCGGACGG+AGG 0.684105 5_1:-17837726 Msa0721330:CDS
TCATCACGGAGAGTATCATG+AGG 0.693280 5_1:-17837589 Msa0721330:CDS
ACAGCAAATTGAATCATAGG+TGG 0.698548 5_1:+17837515 None:intergenic
CAACCAGGTAACCAATCAGG+TGG 0.700340 5_1:-17838655 Msa0721330:CDS
ATTGGAAGTAAAAGGCCCCG+TGG 0.700420 5_1:-17837909 Msa0721330:CDS
TTCCTTAAAGACCATCCCGG+TGG 0.711835 5_1:-17838448 Msa0721330:CDS
CATCACGGAGAGTATCATGA+GGG 0.715577 5_1:-17837588 Msa0721330:CDS
GATACTCAATGTGTCCCACG+GGG 0.743569 5_1:+17837894 None:intergenic
GTTGAGGTAACAATGGACGG+TGG 0.751687 5_1:-17839959 Msa0721330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATTCATATACAATAA+CGG + chr5_1:17838001-17838020 None:intergenic 10.0%
!! TAATTACTATATATCTTAGT+TGG + chr5_1:17837681-17837700 None:intergenic 15.0%
!!! TTTTTTTTATGATTGGTTTA+TGG + chr5_1:17838278-17838297 None:intergenic 15.0%
!! AAAAAATGAAAATTTGTAAG+AGG - chr5_1:17839950-17839969 Msa0721330:CDS 15.0%
!!! CAATATTTTCCATATTTTGT+TGG + chr5_1:17837373-17837392 None:intergenic 20.0%
!! CAACAAAATATGGAAAATAT+TGG - chr5_1:17837371-17837390 Msa0721330:three_prime_UTR 20.0%
!!! AAATCTTATTTGGAATGTTA+TGG - chr5_1:17837495-17837514 Msa0721330:CDS 20.0%
!! GCTATGTATCTTAATTTAAA+TGG + chr5_1:17837541-17837560 None:intergenic 20.0%
!! TGTACTATAAATTTAGTGTT+AGG - chr5_1:17837607-17837626 Msa0721330:CDS 20.0%
!! AAGTATCAATATGACATATT+AGG + chr5_1:17837788-17837807 None:intergenic 20.0%
!! ATACCATAATATTCTACATA+TGG - chr5_1:17837823-17837842 Msa0721330:CDS 20.0%
!! AAACCATATGTAGAATATTA+TGG + chr5_1:17837829-17837848 None:intergenic 20.0%
!! GTAAAAACATATACATCATT+TGG - chr5_1:17837924-17837943 Msa0721330:CDS 20.0%
!! CATTCAATAAATTATGTATG+TGG - chr5_1:17838148-17838167 Msa0721330:CDS 20.0%
!! CATTTAATAAATGTTGTATG+TGG + chr5_1:17838187-17838206 None:intergenic 20.0%
!! ACACAACTATGATTAATTAA+AGG - chr5_1:17838252-17838271 Msa0721330:CDS 20.0%
!!! ATCATTATTTTATGAGTATG+TGG - chr5_1:17838360-17838379 Msa0721330:CDS 20.0%
! AATATGGAAAATATTGGTGT+TGG - chr5_1:17837377-17837396 Msa0721330:three_prime_UTR 25.0%
!! ACATTCCAAATAAGATTTTC+AGG + chr5_1:17837493-17837512 None:intergenic 25.0%
! AAGATACATAGCTAGTATAT+TGG - chr5_1:17837549-17837568 Msa0721330:CDS 25.0%
!!! TGTGGTCTTTTTTTTATGAT+TGG + chr5_1:17838285-17838304 None:intergenic 25.0%
! AATTGTATCACAATGATTTG+TGG + chr5_1:17838303-17838322 None:intergenic 25.0%
! AAATAATGATGCCATTAACT+GGG + chr5_1:17838350-17838369 None:intergenic 25.0%
! AAAATAATGATGCCATTAAC+TGG + chr5_1:17838351-17838370 None:intergenic 25.0%
!!! TAATGAAATTCTTTTGGTGT+TGG - chr5_1:17838488-17838507 Msa0721330:CDS 25.0%
!!! GTGTTTTTTAACTTCAGAAA+GGG + chr5_1:17838741-17838760 None:intergenic 25.0%
!!! TGTGTTTTTTAACTTCAGAA+AGG + chr5_1:17838742-17838761 None:intergenic 25.0%
!!! AAGAAACTAACATTTTTAGC+CGG - chr5_1:17839439-17839458 Msa0721330:intron 25.0%
! ATACATTTCAGTTTGATCAT+TGG + chr5_1:17839518-17839537 None:intergenic 25.0%
! CAAGTAATAGATATTGTGTA+TGG - chr5_1:17839834-17839853 Msa0721330:CDS 25.0%
! GTTATTATTTGTTTGCAGTT+TGG - chr5_1:17839899-17839918 Msa0721330:CDS 25.0%
!!! ATTTTGTTGGTTTTTCTGGA+TGG + chr5_1:17837360-17837379 None:intergenic 30.0%
!!! CCATATTTTGTTGGTTTTTC+TGG + chr5_1:17837364-17837383 None:intergenic 30.0%
CCAGAAAAACCAACAAAATA+TGG - chr5_1:17837361-17837380 Msa0721330:three_prime_UTR 30.0%
!!! CCAAATAAGATTTTCAGGTT+GGG + chr5_1:17837488-17837507 None:intergenic 30.0%
!!! TCCAAATAAGATTTTCAGGT+TGG + chr5_1:17837489-17837508 None:intergenic 30.0%
TCTTAGTTGGTCAATTTCTT+TGG + chr5_1:17837668-17837687 None:intergenic 30.0%
AATATGAGATCCAATACTTG+AGG + chr5_1:17837717-17837736 None:intergenic 30.0%
! ATGGTTTCCTTTTTCTTCAT+AGG - chr5_1:17837842-17837861 Msa0721330:CDS 30.0%
! ATTGGTTCCTATGAAGAAAA+AGG + chr5_1:17837852-17837871 None:intergenic 30.0%
! ACCAATTTAGACTTGTTCTA+CGG - chr5_1:17837866-17837885 Msa0721330:CDS 30.0%
! TTTTAGCCAAGTCATTTCAT+GGG + chr5_1:17838393-17838412 None:intergenic 30.0%
!! ATTTTAGCCAAGTCATTTCA+TGG + chr5_1:17838394-17838413 None:intergenic 30.0%
! ACACGCTAATGAAATTCTTT+TGG - chr5_1:17838482-17838501 Msa0721330:CDS 30.0%
! ACTTTTCTTGAGAATTGGTT+TGG + chr5_1:17838678-17838697 None:intergenic 30.0%
! GAGATACTTTTCTTGAGAAT+TGG + chr5_1:17838683-17838702 None:intergenic 30.0%
TTTGAAGATGTGTTCATGAA+TGG + chr5_1:17838710-17838729 None:intergenic 30.0%
TTGCTCGAAGATTATAGAAT+CGG - chr5_1:17838920-17838939 Msa0721330:intron 30.0%
AGCCATGATTTCTTTAATAG+GGG + chr5_1:17839029-17839048 None:intergenic 30.0%
GAGCCATGATTTCTTTAATA+GGG + chr5_1:17839030-17839049 None:intergenic 30.0%
AGAGCCATGATTTCTTTAAT+AGG + chr5_1:17839031-17839050 None:intergenic 30.0%
TCTTACATCATGTGAAATTG+AGG + chr5_1:17839095-17839114 None:intergenic 30.0%
! TCTTGGTAGAGGAAATTTTT+CGG - chr5_1:17839393-17839412 Msa0721330:intron 30.0%
! TGTATGTTGTTTATGCAAAC+CGG - chr5_1:17839533-17839552 Msa0721330:intron 30.0%
TTGTGGAAAATGCAAATGAA+GGG - chr5_1:17839635-17839654 Msa0721330:intron 30.0%
TGGTTACTTCATTCTTTGTA+AGG - chr5_1:17839919-17839938 Msa0721330:CDS 30.0%
!! TTGGTGGTGTACTTTGTTAT+AGG - chr5_1:17837262-17837281 Msa0721330:three_prime_UTR 35.0%
! TGGTGGTGTACTTTGTTATA+GGG - chr5_1:17837263-17837282 Msa0721330:three_prime_UTR 35.0%
!!! AATATTGGTGTTGGTGCTTT+TGG - chr5_1:17837386-17837405 Msa0721330:three_prime_UTR 35.0%
CCCAACCTGAAAATCTTATT+TGG - chr5_1:17837485-17837504 Msa0721330:CDS 35.0%
TCCGTAGAACAAGTCTAAAT+TGG + chr5_1:17837870-17837889 None:intergenic 35.0%
! TTTTCATTCAATACTCCCTC+CGG - chr5_1:17838091-17838110 Msa0721330:CDS 35.0%
! AAGTTGCTTACATTTGAGAC+CGG + chr5_1:17838113-17838132 None:intergenic 35.0%
TTAACTCCCATGAAATGACT+TGG - chr5_1:17838384-17838403 Msa0721330:CDS 35.0%
!!! TTTTGGTGTTGGCAATTTAC+AGG - chr5_1:17838499-17838518 Msa0721330:CDS 35.0%
!! TTTGGTGTTGGCAATTTACA+GGG - chr5_1:17838500-17838519 Msa0721330:CDS 35.0%
TATGCCAATTTCTCCTTTGT+GGG + chr5_1:17838573-17838592 None:intergenic 35.0%
TTTCCATGCATGGAGTTATT+TGG + chr5_1:17838986-17839005 None:intergenic 35.0%
AAACTCAGAATTTCCATGCA+TGG + chr5_1:17838996-17839015 None:intergenic 35.0%
TGCCCCTATTAAAGAAATCA+TGG - chr5_1:17839024-17839043 Msa0721330:intron 35.0%
!! TTTTTGCAACTAGCTTGCAT+GGG + chr5_1:17839072-17839091 None:intergenic 35.0%
TATTTAGACTCCCTCACTAT+TGG - chr5_1:17839328-17839347 Msa0721330:intron 35.0%
!!! TTGCAAATCTTTGTTTTCCG+TGG + chr5_1:17839420-17839439 None:intergenic 35.0%
!!! AAACTAACATTTTTAGCCGG+TGG - chr5_1:17839442-17839461 Msa0721330:intron 35.0%
!!! AACTAACATTTTTAGCCGGT+GGG - chr5_1:17839443-17839462 Msa0721330:intron 35.0%
GGAGGATGATATATTGTTGA+GGG - chr5_1:17839558-17839577 Msa0721330:intron 35.0%
ACAGTGATAGGTTCAAGATT+TGG - chr5_1:17839608-17839627 Msa0721330:intron 35.0%
! GTTCAAGATTTGGTATGTTG+TGG - chr5_1:17839618-17839637 Msa0721330:intron 35.0%
GTTGTGGAAAATGCAAATGA+AGG - chr5_1:17839634-17839653 Msa0721330:intron 35.0%
ATATAGTGTGGGATTCATCA+CGG - chr5_1:17839663-17839682 Msa0721330:intron 35.0%
ACAGCAAATTGAATCATAGG+TGG + chr5_1:17839754-17839773 None:intergenic 35.0%
TGCACAGCAAATTGAATCAT+AGG + chr5_1:17839757-17839776 None:intergenic 35.0%
CAGCCTAATTTGGAAAAGAT+GGG - chr5_1:17839775-17839794 Msa0721330:CDS 35.0%
AGCCTAATTTGGAAAAGATG+GGG - chr5_1:17839776-17839795 Msa0721330:CDS 35.0%
! TACCCCATCTTTTCCAAATT+AGG + chr5_1:17839781-17839800 None:intergenic 35.0%
GATGGGGTATGATATTAAGA+AGG - chr5_1:17839792-17839811 Msa0721330:CDS 35.0%
! AAGGATTTGCTTGTGTTCTA+GGG - chr5_1:17839811-17839830 Msa0721330:CDS 35.0%
! GGTGGTGTACTTTGTTATAG+GGG - chr5_1:17837264-17837283 Msa0721330:three_prime_UTR 40.0%
! GTGGTGTACTTTGTTATAGG+GGG - chr5_1:17837265-17837284 Msa0721330:three_prime_UTR 40.0%
TAGAAAAGTGACACGAGTTG+AGG - chr5_1:17837291-17837310 Msa0721330:three_prime_UTR 40.0%
! CAATCTCTTTGGTTCCAAGA+AGG + chr5_1:17837435-17837454 None:intergenic 40.0%
! ACGTTGCTTACATTTGAGAC+CGG - chr5_1:17838222-17838241 Msa0721330:CDS 40.0%
!! TGATGAACAACTGTTGGTTC+AGG - chr5_1:17838525-17838544 Msa0721330:CDS 40.0%
!! GATGAACAACTGTTGGTTCA+GGG - chr5_1:17838526-17838545 Msa0721330:CDS 40.0%
ATGCCAATTTCTCCTTTGTG+GGG + chr5_1:17838572-17838591 None:intergenic 40.0%
CTATGCCAATTTCTCCTTTG+TGG + chr5_1:17838574-17838593 None:intergenic 40.0%
ATTGGTTACCTGGTTGTGTT+GGG + chr5_1:17838607-17838626 None:intergenic 40.0%
ACAAAACCCTTGATTCTGCT+TGG - chr5_1:17838759-17838778 Msa0721330:intron 40.0%
GATGATCCAAGCAGAATCAA+GGG + chr5_1:17838768-17838787 None:intergenic 40.0%
GTGGATAGCTTCGAATTCAT+CGG + chr5_1:17838882-17838901 None:intergenic 40.0%
GAGCAATTTCTTCGCTTTGT+CGG + chr5_1:17838906-17838925 None:intergenic 40.0%
TCACCAAATAACTCCATGCA+TGG - chr5_1:17838980-17838999 Msa0721330:intron 40.0%
!! GTTTTTGCAACTAGCTTGCA+TGG + chr5_1:17839073-17839092 None:intergenic 40.0%
CTTCAGAGGGTAATGCAAAA+CGG + chr5_1:17839123-17839142 None:intergenic 40.0%
! ACCCTCTGAAGACCAATTAT+TGG - chr5_1:17839132-17839151 Msa0721330:intron 40.0%
!! CCCAATAATTGGTCTTCAGA+GGG + chr5_1:17839136-17839155 None:intergenic 40.0%
! CCCTCTGAAGACCAATTATT+GGG - chr5_1:17839133-17839152 Msa0721330:intron 40.0%
!! TCCCAATAATTGGTCTTCAG+AGG + chr5_1:17839137-17839156 None:intergenic 40.0%
TAGGAAAATGTGTTTCCCGA+CGG + chr5_1:17839164-17839183 None:intergenic 40.0%
TGTTACCGTCGATGGAAAAT+TGG - chr5_1:17839186-17839205 Msa0721330:intron 40.0%
! CATGACCAATTTTCCATCGA+CGG + chr5_1:17839194-17839213 None:intergenic 40.0%
ATTTCATCGACGCTACTTGT+TGG + chr5_1:17839229-17839248 None:intergenic 40.0%
!! ACAAGTAGCGTCGATGAAAT+TGG - chr5_1:17839229-17839248 Msa0721330:intron 40.0%
!! CAAGTAGCGTCGATGAAATT+GGG - chr5_1:17839230-17839249 Msa0721330:intron 40.0%
ATTCCACCATTAGGAAACCT+CGG + chr5_1:17839298-17839317 None:intergenic 40.0%
TGAGACATGATTCCACCATT+AGG + chr5_1:17839307-17839326 None:intergenic 40.0%
AAGATACTCAATGTGTCCCA+CGG + chr5_1:17839377-17839396 None:intergenic 40.0%
CACATTGAGTATCTTGGTAG+AGG - chr5_1:17839382-17839401 Msa0721330:intron 40.0%
!! AGAGGAAATTTTTCGGTCCA+CGG - chr5_1:17839400-17839419 Msa0721330:intron 40.0%
TTGATAAACCGGTGTGATTC+CGG + chr5_1:17839470-17839489 None:intergenic 40.0%
!! AATCACACCGGTTTATCAAG+TGG - chr5_1:17839471-17839490 Msa0721330:intron 40.0%
! TGTTGTTTATGCAAACCGGA+CGG - chr5_1:17839537-17839556 Msa0721330:intron 40.0%
ACAATATATCATCCTCCGTC+CGG + chr5_1:17839555-17839574 None:intergenic 40.0%
CGGAGGATGATATATTGTTG+AGG - chr5_1:17839557-17839576 Msa0721330:intron 40.0%
GGGCAAAGAATTACAGTGAT+AGG - chr5_1:17839596-17839615 Msa0721330:intron 40.0%
TGGAAAATGCAAATGAAGGG+TGG - chr5_1:17839638-17839657 Msa0721330:intron 40.0%
GGAAAATGCAAATGAAGGGT+GGG - chr5_1:17839639-17839658 Msa0721330:intron 40.0%
!! ATACTTTGGCATTGGCTTGT+GGG - chr5_1:17839725-17839744 Msa0721330:intron 40.0%
GCAAATTGAATCATAGGTGG+TGG + chr5_1:17839751-17839770 None:intergenic 40.0%
!! ATTTGCTGTGCAGCCTAATT+TGG - chr5_1:17839765-17839784 Msa0721330:intron 40.0%
GCAGCCTAATTTGGAAAAGA+TGG - chr5_1:17839774-17839793 Msa0721330:CDS 40.0%
! GAAGGATTTGCTTGTGTTCT+AGG - chr5_1:17839810-17839829 Msa0721330:CDS 40.0%
! CTCTTTGCTAGCTTATGATC+AGG - chr5_1:17839978-17839997 Msa0721330:CDS 40.0%
! GATCAGGCTTTGATGTAGTT+AGG - chr5_1:17839994-17840013 Msa0721330:CDS 40.0%
! GTGTACTTTGTTATAGGGGG+TGG - chr5_1:17837268-17837287 Msa0721330:three_prime_UTR 45.0%
! GACACGAGTTGAGGTAACAA+TGG - chr5_1:17837300-17837319 Msa0721330:three_prime_UTR 45.0%
! CGAGTTGAGGTAACAATGGA+CGG - chr5_1:17837304-17837323 Msa0721330:three_prime_UTR 45.0%
!! CTTTTGGTCTCTGGAAGTTG+AGG - chr5_1:17837402-17837421 Msa0721330:three_prime_UTR 45.0%
TGCTCGTACAGCAATCTCTT+TGG + chr5_1:17837446-17837465 None:intergenic 45.0%
AAGAGATTGCTGTACGAGCA+TGG - chr5_1:17837446-17837465 Msa0721330:exon 45.0%
AGAGATTGCTGTACGAGCAT+GGG - chr5_1:17837447-17837466 Msa0721330:exon 45.0%
TCCACTTGCTCCTCAAGTAT+TGG - chr5_1:17837704-17837723 Msa0721330:CDS 45.0%
TCCAATACTTGAGGAGCAAG+TGG + chr5_1:17837708-17837727 None:intergenic 45.0%
! TGCTTACATTTGAGACCGGA+GGG + chr5_1:17838226-17838245 None:intergenic 45.0%
! TTGCTTACATTTGAGACCGG+AGG + chr5_1:17838225-17838244 None:intergenic 45.0%
! TTGCTTACATTTGAGACCGG+AGG - chr5_1:17838225-17838244 Msa0721330:CDS 45.0%
! TGCTTACATTTGAGACCGGA+GGG - chr5_1:17838226-17838245 Msa0721330:CDS 45.0%
TCATAGTTGTGTACTCCCTC+CGG + chr5_1:17838244-17838263 None:intergenic 45.0%
GCACCCTATGTACCTATCAT+TGG - chr5_1:17838324-17838343 Msa0721330:CDS 45.0%
GGGCCAATGATAGGTACATA+GGG + chr5_1:17838330-17838349 None:intergenic 45.0%
TGGGCCAATGATAGGTACAT+AGG + chr5_1:17838331-17838350 None:intergenic 45.0%
CCATTAACTGGGCCAATGAT+AGG + chr5_1:17838339-17838358 None:intergenic 45.0%
CCTATCATTGGCCCAGTTAA+TGG - chr5_1:17838336-17838355 Msa0721330:CDS 45.0%
AGGGCATGATGAACAACTGT+TGG - chr5_1:17838519-17838538 Msa0721330:CDS 45.0%
GGGTGAAAACAAACGTGTGT+AGG - chr5_1:17838546-17838565 Msa0721330:CDS 45.0%
TTTGAACACCCAACACAACC+AGG - chr5_1:17838596-17838615 Msa0721330:CDS 45.0%
! GATTGGTTACCTGGTTGTGT+TGG + chr5_1:17838608-17838627 None:intergenic 45.0%
ACACAACCAGGTAACCAATC+AGG - chr5_1:17838608-17838627 Msa0721330:CDS 45.0%
TAACCAATCAGGTGGTTGGA+TGG - chr5_1:17838619-17838638 Msa0721330:CDS 45.0%
CGATGATCCAAGCAGAATCA+AGG + chr5_1:17838769-17838788 None:intergenic 45.0%
GACAGCATCTTGATCAATGC+CGG - chr5_1:17838845-17838864 Msa0721330:intron 45.0%
TTCATCGGTACAATCAGTGC+CGG + chr5_1:17838867-17838886 None:intergenic 45.0%
ATTTCTTCGCTTTGTCGGAG+TGG + chr5_1:17838901-17838920 None:intergenic 45.0%
!! AATCGGTGAACTTGTTGCCA+CGG - chr5_1:17838937-17838956 Msa0721330:intron 45.0%
!! ATTTGGTGACGATGAATCCG+AGG + chr5_1:17838969-17838988 None:intergenic 45.0%
! TGCATGGGATTTTCTCACGT+GGG + chr5_1:17839057-17839076 None:intergenic 45.0%
! TTGCATGGGATTTTCTCACG+TGG + chr5_1:17839058-17839077 None:intergenic 45.0%
CAATTATTGGGACTACCCGT+CGG - chr5_1:17839145-17839164 Msa0721330:intron 45.0%
AATTATTGGGACTACCCGTC+GGG - chr5_1:17839146-17839165 Msa0721330:intron 45.0%
AGGAAAATGTGTTTCCCGAC+GGG + chr5_1:17839163-17839182 None:intergenic 45.0%
TTCCTATGTGTTACCGTCGA+TGG - chr5_1:17839178-17839197 Msa0721330:intron 45.0%
TTCCATCGACGGTAACACAT+AGG + chr5_1:17839183-17839202 None:intergenic 45.0%
TTCCACCATTAGGAAACCTC+GGG + chr5_1:17839297-17839316 None:intergenic 45.0%
CAATGTCGAGCCAATAGTGA+GGG + chr5_1:17839341-17839360 None:intergenic 45.0%
GGCTCGACATTGGAAGTAAA+AGG - chr5_1:17839349-17839368 Msa0721330:intron 45.0%
AGATACTCAATGTGTCCCAC+GGG + chr5_1:17839376-17839395 None:intergenic 45.0%
GTGGGACACATTGAGTATCT+TGG - chr5_1:17839376-17839395 Msa0721330:intron 45.0%
GAGTTCGCCACTTGATAAAC+CGG + chr5_1:17839481-17839500 None:intergenic 45.0%
! AGTGGCGAACTCGATTTTGA+AGG - chr5_1:17839489-17839508 Msa0721330:intron 45.0%
TGAGGGAAGAGTTAGATGAG+TGG - chr5_1:17839575-17839594 Msa0721330:intron 45.0%
GAGGGAAGAGTTAGATGAGT+GGG - chr5_1:17839576-17839595 Msa0721330:intron 45.0%
TGAAGGGTGGGAATATAGTG+TGG - chr5_1:17839651-17839670 Msa0721330:intron 45.0%
GAAGGGTGGGAATATAGTGT+GGG - chr5_1:17839652-17839671 Msa0721330:intron 45.0%
!! TCATCACGGAGAGTATCATG+AGG - chr5_1:17839677-17839696 Msa0721330:intron 45.0%
!! CATCACGGAGAGTATCATGA+GGG - chr5_1:17839678-17839697 Msa0721330:intron 45.0%
! AAAGTATCCTCACCAGCCAA+TGG + chr5_1:17839712-17839731 None:intergenic 45.0%
ATTGGCTGGTGAGGATACTT+TGG - chr5_1:17839711-17839730 Msa0721330:intron 45.0%
TGGTGAGGATACTTTGGCAT+TGG - chr5_1:17839717-17839736 Msa0721330:intron 45.0%
!! GATACTTTGGCATTGGCTTG+TGG - chr5_1:17839724-17839743 Msa0721330:intron 45.0%
GTTGAGGTAACAATGGACGG+TGG - chr5_1:17837307-17837326 Msa0721330:three_prime_UTR 50.0%
CAATGGACGGTGGAGAAACA+TGG - chr5_1:17837317-17837336 Msa0721330:three_prime_UTR 50.0%
AACATGGCACGTGTGCACAT+TGG - chr5_1:17837333-17837352 Msa0721330:three_prime_UTR 50.0%
!! GTGTTGGTGCTTTTGGTCTC+TGG - chr5_1:17837393-17837412 Msa0721330:three_prime_UTR 50.0%
GGCTGCTGATAGCAAAGTGA+AGG + chr5_1:17837767-17837786 None:intergenic 50.0%
AGGCCCCACAAAGGAGAAAT+TGG - chr5_1:17838566-17838585 Msa0721330:CDS 50.0%
CAACCAGGTAACCAATCAGG+TGG - chr5_1:17838611-17838630 Msa0721330:CDS 50.0%
! CAACCACCTGATTGGTTACC+TGG + chr5_1:17838617-17838636 None:intergenic 50.0%
CAGGTAACCAATCAGGTGGT+TGG - chr5_1:17838615-17838634 Msa0721330:CDS 50.0%
TTGCCATCCAACCACCTGAT+TGG + chr5_1:17838625-17838644 None:intergenic 50.0%
TCTGCTTGGATCATCGTCCA+CGG - chr5_1:17838773-17838792 Msa0721330:intron 50.0%
! GGGATGGTCTTTAAGGAAGC+GGG + chr5_1:17838816-17838835 None:intergenic 50.0%
! CGGGATGGTCTTTAAGGAAG+CGG + chr5_1:17838817-17838836 None:intergenic 50.0%
CGCTTCCTTAAAGACCATCC+CGG - chr5_1:17838815-17838834 Msa0721330:intron 50.0%
TTCCTTAAAGACCATCCCGG+TGG - chr5_1:17838818-17838837 Msa0721330:intron 50.0%
!! ATCGGTGAACTTGTTGCCAC+GGG - chr5_1:17838938-17838957 Msa0721330:intron 50.0%
CGACGGGTAGTCCCAATAAT+TGG + chr5_1:17839147-17839166 None:intergenic 50.0%
ACTTCAAAAACGTGCACCCG+AGG - chr5_1:17839278-17839297 Msa0721330:intron 50.0%
CCAATGTCGAGCCAATAGTG+AGG + chr5_1:17839342-17839361 None:intergenic 50.0%
!! CCTCACTATTGGCTCGACAT+TGG - chr5_1:17839339-17839358 Msa0721330:intron 50.0%
ATTGGAAGTAAAAGGCCCCG+TGG - chr5_1:17839357-17839376 Msa0721330:intron 50.0%
TTGGAAGTAAAAGGCCCCGT+GGG - chr5_1:17839358-17839377 Msa0721330:intron 50.0%
GATACTCAATGTGTCCCACG+GGG + chr5_1:17839375-17839394 None:intergenic 50.0%
!!! ACATTTTTAGCCGGTGGGAC+CGG - chr5_1:17839448-17839467 Msa0721330:intron 50.0%
TGTTTATGCAAACCGGACGG+AGG - chr5_1:17839540-17839559 Msa0721330:intron 50.0%
! CATGAGGGAGCATGTTCCAT+TGG - chr5_1:17839693-17839712 Msa0721330:intron 50.0%
! GTCTCTGGAAGTTGAGGTGC+TGG - chr5_1:17837408-17837427 Msa0721330:three_prime_UTR 55.0%
!! GTTGAGGTGCTGGACCTTCT+TGG - chr5_1:17837418-17837437 Msa0721330:three_prime_UTR 55.0%
TGCTGTACGAGCATGGGATG+AGG - chr5_1:17837453-17837472 Msa0721330:exon 55.0%
AACGTGTGTAGGCCCCACAA+AGG - chr5_1:17838557-17838576 Msa0721330:CDS 55.0%
TGCAGTCGTAGACATTGCCG+TGG + chr5_1:17838793-17838812 None:intergenic 55.0%
AGCCACCGGGATGGTCTTTA+AGG + chr5_1:17838823-17838842 None:intergenic 55.0%
TAAAGACCATCCCGGTGGCT+CGG - chr5_1:17838823-17838842 Msa0721330:intron 55.0%
GTGCACCCGAGGTTTCCTAA+TGG - chr5_1:17839289-17839308 Msa0721330:intron 55.0%
CACCCGAGGTTTCCTAATGG+TGG - chr5_1:17839292-17839311 Msa0721330:intron 55.0%
! AGGGAGCATGTTCCATTGGC+TGG - chr5_1:17839697-17839716 Msa0721330:intron 55.0%
! GCATGTTCCATTGGCTGGTG+AGG - chr5_1:17839702-17839721 Msa0721330:intron 55.0%
AAGATGCTGTCCGAGCCACC+GGG + chr5_1:17838836-17838855 None:intergenic 60.0%
CAAGATGCTGTCCGAGCCAC+CGG + chr5_1:17838837-17838856 None:intergenic 60.0%
! TGTTGCCACGGGCTACACCT+CGG - chr5_1:17838949-17838968 Msa0721330:intron 60.0%
TGAATCCGAGGTGTAGCCCG+TGG + chr5_1:17838957-17838976 None:intergenic 60.0%
CGGTGTGATTCCGGTCCCAC+CGG + chr5_1:17839461-17839480 None:intergenic 65.0%
CGGTGGGACCGGAATCACAC+CGG - chr5_1:17839459-17839478 Msa0721330:intron 65.0%
TGCTGTCCGAGCCACCGGGA+TGG + chr5_1:17838832-17838851 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 17837256 17840032 17837256 ID=Msa0721330;Name=Msa0721330
chr5_1 mRNA 17837256 17840032 17837256 ID=Msa0721330-mRNA-1;Parent=Msa0721330;Name=Msa0721330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|201|523
chr5_1 exon 17837256 17838767 17837256 ID=Msa0721330-mRNA-1:exon:6811;Parent=Msa0721330-mRNA-1
chr5_1 exon 17839772 17840032 17839772 ID=Msa0721330-mRNA-1:exon:6810;Parent=Msa0721330-mRNA-1
chr5_1 CDS 17839772 17840032 17839772 ID=Msa0721330-mRNA-1:cds;Parent=Msa0721330-mRNA-1
chr5_1 CDS 17837457 17838767 17837457 ID=Msa0721330-mRNA-1:cds;Parent=Msa0721330-mRNA-1
chr5_1 three_prime_UTR 17837256 17837456 17837256 ID=Msa0721330-mRNA-1:three_prime_utr;Parent=Msa0721330-mRNA-1
Gene Sequence

>Msa0721330

CTGACATTGGTGGTGTACTTTGTTATAGGGGGTGGTAGAAAAGTGACACGAGTTGAGGTAACAATGGACGGTGGAGAAACATGGCACGTGTGCACATTGGACCATCCAGAAAAACCAACAAAATATGGAAAATATTGGTGTTGGTGCTTTTGGTCTCTGGAAGTTGAGGTGCTGGACCTTCTTGGAACCAAAGAGATTGCTGTACGAGCATGGGATGAGGCACTCAACACCCAACCTGAAAATCTTATTTGGAATGTTATGGGCATGATGAACAACTGTTGGTTCAGGGTGAAAACAAACGTGTGTAGGCCCCACAAAGGAGAAATTGGCATAGTGTTTGAACACCCAACACAACCAGGTAACCAATCAGGTGGTTGGATGGCAAAAGAAAGACACTTAGAAAGATCACAAGAAACCAAACCAATTCTCAAGAAAAGTATCTCTACTCCATTCATGAACACATCTTCAAAAACATACTCCCTTTCTGAAGTTAAAAAACACAAAACCCTTGATTCTGCTTGGATCATCGTCCACGGCAATGTCTACGACTGCACCCGCTTCCTTAAAGACCATCCCGGTGGCTCGGACAGCATCTTGATCAATGCCGGCACTGATTGTACCGATGAATTCGAAGCTATCCACTCCGACAAAGCGAAGAAATTGCTCGAAGATTATAGAATCGGTGAACTTGTTGCCACGGGCTACACCTCGGATTCATCGTCACCAAATAACTCCATGCATGGAAATTCTGAGTTTACTCATCTTGCCCCTATTAAAGAAATCATGGCTCTTAACCCACGTGAGAAAATCCCATGCAAGCTAGTTGCAAAAACCTCAATTTCACATGATGTAAGACTCTTCCGTTTTGCATTACCCTCTGAAGACCAATTATTGGGACTACCCGTCGGGAAACACATTTTCCTATGTGTTACCGTCGATGGAAAATTGGTCATGCGAGCTTATACGCCAACAAGTAGCGTCGATGAAATTGGGTATTTTGAATTAGTTGTCAAAATTTACTTCAAAAACGTGCACCCGAGGTTTCCTAATGGTGGAATCATGTCTCAATATTTAGACTCCCTCACTATTGGCTCGACATTGGAAGTAAAAGGCCCCGTGGGACACATTGAGTATCTTGGTAGAGGAAATTTTTCGGTCCACGGAAAACAAAGATTTGCAAAGAAACTAACATTTTTAGCCGGTGGGACCGGAATCACACCGGTTTATCAAGTGGCGAACTCGATTTTGAAGGATGCCAATGATCAAACTGAAATGTATGTTGTTTATGCAAACCGGACGGAGGATGATATATTGTTGAGGGAAGAGTTAGATGAGTGGGCAAAGAATTACAGTGATAGGTTCAAGATTTGGTATGTTGTGGAAAATGCAAATGAAGGGTGGGAATATAGTGTGGGATTCATCACGGAGAGTATCATGAGGGAGCATGTTCCATTGGCTGGTGAGGATACTTTGGCATTGGCTTGTGGGCCACCACCTATGATTCAATTTGCTGTGCAGCCTAATTTGGAAAAGATGGGGTATGATATTAAGAAGGATTTGCTTGTGTTCTAG
Protein sequence

>Msa0721330

LTLVVYFVIGGGRKVTRVEVTMDGGETWHVCTLDHPEKPTKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEALNTQPENLIWNVMGMMNNCWFRVKTNVCRPHKGEIGIVFEHPTQPGNQSGGWMAKERHLERSQETKPILKKSISTPFMNTSSKTYSLSEVKKHKTLDSAWIIVHGNVYDCTRFLKDHPGGSDSILINAGTDCTDEFEAIHSDKAKKLLEDYRIGELVATGYTSDSSSPNNSMHGNSEFTHLAPIKEIMALNPREKIPCKLVAKTSISHDVRLFRFALPSEDQLLGLPVGKHIFLCVTVDGKLVMRAYTPTSSVDEIGYFELVVKIYFKNVHPRFPNGGIMSQYLDSLTIGSTLEVKGPVGHIEYLGRGNFSVHGKQRFAKKLTFLAGGTGITPVYQVANSILKDANDQTEMYVVYANRTEDDILLREELDEWAKNYSDRFKIWYVVENANEGWEYSVGFITESIMREHVPLAGEDTLALACGPPPMIQFAVQPNLEKMGYDIKKDLLVF*