Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811330 | XP_024639340.1 | 94.700 | 434 | 21 | 1 | 186 | 619 | 22 | 453 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811330 | sp|Q9S7V4|HA22A_ARATH | 35.922 | 103 | 61 | 1 | 165 | 267 | 6 | 103 | 2.04e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811330 | A0A396HSG0 | 94.700 | 434 | 21 | 1 | 186 | 619 | 22 | 453 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028320 | Msa0811330 | 0.802990 | 4.314821e-49 | -8.615850e-47 |
| Msa0732840 | Msa0811330 | 0.924390 | 7.512620e-90 | -8.615850e-47 |
| Msa0811330 | Msa0886330 | -0.809555 | 1.786249e-50 | -8.615850e-47 |
| Msa0811330 | Msa1179120 | 0.808533 | 2.955746e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811330 | MtrunA17_Chr5g0427761 | 94.700 | 434 | 21 | 1 | 186 | 619 | 22 | 453 | 0.0 | 845 |
| Msa0811330 | MtrunA17_Chr2g0281001 | 34.524 | 168 | 105 | 3 | 457 | 619 | 35 | 202 | 4.35e-21 | 92.0 |
| Msa0811330 | MtrunA17_Chr3g0097141 | 37.895 | 95 | 57 | 1 | 177 | 269 | 6 | 100 | 1.17e-16 | 77.8 |
| Msa0811330 | MtrunA17_Chr4g0060581 | 35.714 | 84 | 54 | 0 | 186 | 269 | 25 | 108 | 2.14e-15 | 74.7 |
| Msa0811330 | MtrunA17_Chr5g0443431 | 35.052 | 97 | 58 | 1 | 178 | 269 | 4 | 100 | 7.44e-14 | 69.7 |
| Msa0811330 | MtrunA17_Chr6g0480701 | 29.940 | 167 | 114 | 2 | 456 | 619 | 623 | 789 | 1.42e-13 | 73.9 |
| Msa0811330 | MtrunA17_Chr3g0132031 | 30.392 | 102 | 66 | 1 | 168 | 269 | 4 | 100 | 3.37e-12 | 64.7 |
| Msa0811330 | MtrunA17_Chr8g0386221 | 29.167 | 96 | 63 | 1 | 172 | 267 | 8 | 98 | 1.41e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811330 | AT1G74520.1 | 35.922 | 103 | 61 | 1 | 165 | 267 | 6 | 103 | 2.07e-16 | 77.8 |
| Msa0811330 | AT1G74520.2 | 35.922 | 103 | 61 | 1 | 165 | 267 | 6 | 103 | 2.07e-16 | 77.8 |
| Msa0811330 | AT1G69700.1 | 29.008 | 131 | 89 | 1 | 185 | 315 | 23 | 149 | 1.62e-14 | 72.8 |
| Msa0811330 | AT2G42820.1 | 33.333 | 84 | 56 | 0 | 186 | 269 | 17 | 100 | 1.35e-13 | 69.3 |
| Msa0811330 | AT5G62490.1 | 28.302 | 106 | 71 | 1 | 164 | 269 | 5 | 105 | 1.91e-11 | 63.5 |
| Msa0811330 | AT4G24960.1 | 31.707 | 82 | 56 | 0 | 186 | 267 | 17 | 98 | 7.41e-11 | 60.8 |
Find 123 sgRNAs with CRISPR-Local
Find 487 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATATCTCAAACTTATT+TGG | 0.127608 | 5_3:+40461557 | Msa0811330:three_prime_UTR |
| AGGATAACAATTTCGCTAAT+TGG | 0.194301 | 5_3:+40455133 | Msa0811330:CDS |
| TTTCCATTCACACCATATTA+TGG | 0.214195 | 5_3:-40460862 | None:intergenic |
| GATTCAGAATATTTGCAATT+TGG | 0.215007 | 5_3:-40460827 | None:intergenic |
| AGAGGCCTTGTTCTCTCTTT+AGG | 0.218594 | 5_3:+40461050 | Msa0811330:CDS |
| TTCACACAGGTTTCAGCTTT+TGG | 0.219860 | 5_3:-40461149 | None:intergenic |
| CTATTGTTAATACCTTATTT+TGG | 0.243172 | 5_3:+40459904 | Msa0811330:CDS |
| CTTGTTCTCTCTTTAGGTCT+TGG | 0.247801 | 5_3:+40461056 | Msa0811330:CDS |
| GTGGTCTGCTTCGTGATTAT+CGG | 0.253798 | 5_3:+40460952 | Msa0811330:CDS |
| TGGTGGAACTTTGGGCTATA+TGG | 0.256656 | 5_3:+40461027 | Msa0811330:CDS |
| TACTTTCTTGGTGGAACTTT+GGG | 0.281464 | 5_3:+40461019 | Msa0811330:CDS |
| ATGTCAACTTAACCACTAAA+TGG | 0.290537 | 5_3:-40461457 | None:intergenic |
| CAATCACAAACCGAACCTTT+TGG | 0.294588 | 5_3:-40453166 | None:intergenic |
| GTCTTGGGATAAAATCAATA+TGG | 0.303390 | 5_3:+40461072 | Msa0811330:CDS |
| TTCGAGACAAATGCGCAAAT+TGG | 0.310319 | 5_3:-40460981 | None:intergenic |
| ATTTGTTGGGTGATTAGAAA+TGG | 0.323444 | 5_3:+40454905 | Msa0811330:CDS |
| TTGTTCTCTCTTTAGGTCTT+GGG | 0.332936 | 5_3:+40461057 | Msa0811330:CDS |
| CTTCAGAAGCACTAATCTTC+AGG | 0.345469 | 5_3:-40455953 | None:intergenic |
| AGGATTCAAGTGTTGTTTCA+TGG | 0.347081 | 5_3:+40456068 | Msa0811330:CDS |
| AATAAAGAAACAGCTGGTTT+TGG | 0.354908 | 5_3:+40460930 | Msa0811330:CDS |
| ATGTTATAGCTTCCATTTAG+TGG | 0.362109 | 5_3:+40461445 | Msa0811330:three_prime_UTR |
| GTTGCAGATATGTTTCTATT+CGG | 0.367407 | 5_3:+40458154 | Msa0811330:intron |
| TTAATTAAACGCTACTGTAC+TGG | 0.372209 | 5_3:+40459952 | Msa0811330:CDS |
| AATTTGCACTGTTATTTAGT+TGG | 0.374483 | 5_3:+40458262 | Msa0811330:CDS |
| TATTGCGCAGCACCAAAATA+AGG | 0.378729 | 5_3:-40459916 | None:intergenic |
| AAGCACAACTCCATTCCTTC+TGG | 0.379728 | 5_3:-40460632 | None:intergenic |
| CATATTATGGATCTAGAAAC+TGG | 0.383191 | 5_3:-40460849 | None:intergenic |
| CAAAATAAGGTATTAACAAT+AGG | 0.384113 | 5_3:-40459903 | None:intergenic |
| GAGCAAAGGAAGTCTCTTGC+AGG | 0.386821 | 5_3:+40456768 | Msa0811330:CDS |
| ATACTTTCTTGGTGGAACTT+TGG | 0.389611 | 5_3:+40461018 | Msa0811330:CDS |
| TCCCCAAGGAGATACTTTCT+TGG | 0.395766 | 5_3:+40461007 | Msa0811330:CDS |
| AATGAGTTGTAATAATTGTC+TGG | 0.395962 | 5_3:-40460161 | None:intergenic |
| GATTCCGAATCTTAGCATCT+TGG | 0.396162 | 5_3:+40454958 | Msa0811330:CDS |
| AATTGGACTCTCTTTGTAGA+TGG | 0.397622 | 5_3:+40455150 | Msa0811330:CDS |
| CAGTTTCTAGATCCATAATA+TGG | 0.399797 | 5_3:+40460850 | Msa0811330:CDS |
| TTTGTTGGGTGATTAGAAAT+GGG | 0.408745 | 5_3:+40454906 | Msa0811330:CDS |
| CACCAAGAAAGTATCTCCTT+GGG | 0.423053 | 5_3:-40461009 | None:intergenic |
| ATAACATTAATTTCTACCTA+TGG | 0.426049 | 5_3:-40461429 | None:intergenic |
| GTCATTTCAAAGGTGTTTGA+AGG | 0.427320 | 5_3:+40456139 | Msa0811330:CDS |
| TGGTCTGCTTCGTGATTATC+GGG | 0.429907 | 5_3:+40460953 | Msa0811330:CDS |
| GATCCATAATATGGTGTGAA+TGG | 0.430360 | 5_3:+40460859 | Msa0811330:CDS |
| AACTGAATTTGAGAAATTCA+AGG | 0.440191 | 5_3:+40456048 | Msa0811330:CDS |
| TAGCAAAAGTGTTGAAGAAT+CGG | 0.443544 | 5_3:+40460107 | Msa0811330:CDS |
| CACTTAGGGTCACATCTTCA+AGG | 0.453205 | 5_3:+40460684 | Msa0811330:CDS |
| AGCAGATCATCTTGCAAAGA+TGG | 0.464394 | 5_3:+40461244 | Msa0811330:CDS |
| ATGTCCAAGGTAATATTTGT+TGG | 0.465396 | 5_3:+40454891 | Msa0811330:CDS |
| AATAAGTTTGAGATATCATA+AGG | 0.465396 | 5_3:-40461554 | None:intergenic |
| AAAGGACAAAGCAAAGTAAT+CGG | 0.468833 | 5_3:-40458046 | None:intergenic |
| CATCAGGGGAGAGATGATCT+TGG | 0.473534 | 5_3:+40460558 | Msa0811330:intron |
| ATGAATGGATCCAAAAGGTT+CGG | 0.474432 | 5_3:+40453156 | Msa0811330:CDS |
| ATCGAAATTCATCAAAGGAC+AGG | 0.478393 | 5_3:+40456091 | Msa0811330:CDS |
| TGGAAACATACTTTCTGAAT+CGG | 0.481170 | 5_3:+40460047 | Msa0811330:CDS |
| CCACCAAGAAAGTATCTCCT+TGG | 0.481826 | 5_3:-40461010 | None:intergenic |
| AAAAGAAAGTCCAGAAGGAA+TGG | 0.482543 | 5_3:+40460622 | Msa0811330:CDS |
| CATACTTTCTGAATCGGATA+CGG | 0.483563 | 5_3:+40460053 | Msa0811330:CDS |
| CCAAGGAGATACTTTCTTGG+TGG | 0.484206 | 5_3:+40461010 | Msa0811330:CDS |
| CTTGCAAAGATGGCTGTTTG+TGG | 0.484608 | 5_3:+40461254 | Msa0811330:CDS |
| TTCGTTATTGCAGGCTCCCA+TGG | 0.484694 | 5_3:+40459851 | Msa0811330:intron |
| AAAGGACAGGGAAAGATTAG+TGG | 0.486294 | 5_3:+40456104 | Msa0811330:CDS |
| TTTGATTCTTTGCTGCGTAA+AGG | 0.486434 | 5_3:-40460778 | None:intergenic |
| TGAGTAAGTTTGATGAGTCT+CGG | 0.487445 | 5_3:+40461189 | Msa0811330:CDS |
| GGAAAGAAATAATGAGGTAA+AGG | 0.490784 | 5_3:-40461580 | None:intergenic |
| ACTGCAAGTGAAAATCACTT+AGG | 0.493129 | 5_3:+40460669 | Msa0811330:CDS |
| TGTCCAAGGTAATATTTGTT+GGG | 0.501431 | 5_3:+40454892 | Msa0811330:CDS |
| CTGCAAGTGAAAATCACTTA+GGG | 0.508443 | 5_3:+40460670 | Msa0811330:CDS |
| TCTGTAAATAAAGAAACAGC+TGG | 0.514986 | 5_3:+40460924 | Msa0811330:CDS |
| TCTTGGGATAAAATCAATAT+GGG | 0.519546 | 5_3:+40461073 | Msa0811330:CDS |
| TAATTAAACGCTACTGTACT+GGG | 0.522290 | 5_3:+40459953 | Msa0811330:CDS |
| GATTGTCTTCACAACACTCA+TGG | 0.524206 | 5_3:-40461108 | None:intergenic |
| CATGAATGAATGGATCCAAA+AGG | 0.535472 | 5_3:+40453151 | None:intergenic |
| TACCATCTGAACGGAGTTGG+TGG | 0.537300 | 5_3:+40461380 | Msa0811330:three_prime_UTR |
| GATTCCAAGATGCTAAGATT+CGG | 0.538146 | 5_3:-40454962 | None:intergenic |
| ATATGTTTCTATTCGGACGT+TGG | 0.539419 | 5_3:+40458161 | Msa0811330:CDS |
| ATGAGTTGTAATAATTGTCT+GGG | 0.545208 | 5_3:-40460160 | None:intergenic |
| CGTGTCTAGCGCCATGTCCA+AGG | 0.551231 | 5_3:+40454878 | Msa0811330:intron |
| CTCCACCAACTCCGTTCAGA+TGG | 0.552749 | 5_3:-40461382 | None:intergenic |
| TGCAAAGTGTGCTTGAGCAA+AGG | 0.557543 | 5_3:+40456754 | Msa0811330:CDS |
| CTATCCCTCTGAGGAGCAAG+AGG | 0.559672 | 5_3:+40455113 | Msa0811330:CDS |
| TCACCCAACAAATATTACCT+TGG | 0.559709 | 5_3:-40454895 | None:intergenic |
| ATACTTTCTGAATCGGATAC+GGG | 0.559997 | 5_3:+40460054 | Msa0811330:CDS |
| TTATCCTCTTGCTCCTCAGA+GGG | 0.562378 | 5_3:-40455117 | None:intergenic |
| CATGGATCGAAATTCATCAA+AGG | 0.570271 | 5_3:+40456086 | Msa0811330:CDS |
| TTGATTGTGTTCTTGAGCAT+AGG | 0.571289 | 5_3:+40456723 | Msa0811330:CDS |
| TGGTGAAATGGCTTCTGATG+AGG | 0.574708 | 5_3:-40456012 | None:intergenic |
| AGTTACCATCTGAACGGAGT+TGG | 0.577250 | 5_3:+40461377 | Msa0811330:three_prime_UTR |
| TTCTTTATTTACAGAACCGT+CGG | 0.577442 | 5_3:-40460916 | None:intergenic |
| TTTACGCAGCAAAGAATCAA+AGG | 0.578183 | 5_3:+40460780 | Msa0811330:CDS |
| AGTCTCGGATTTCTCACTCA+TGG | 0.579409 | 5_3:+40461204 | Msa0811330:CDS |
| GGCTGTTTGTGGAAATGATG+TGG | 0.583486 | 5_3:+40461265 | Msa0811330:CDS |
| AGGGAAGAAACACAAGGCTA+AGG | 0.587634 | 5_3:+40460704 | Msa0811330:CDS |
| TGCGTAAAGGATAGAACATA+CGG | 0.588069 | 5_3:-40460765 | None:intergenic |
| GAGGAACAAAATATCTAAGA+CGG | 0.590469 | 5_3:+40461345 | Msa0811330:CDS |
| TAACAATAGGATAGTTGCCA+CGG | 0.590991 | 5_3:-40459890 | None:intergenic |
| CTTTCACATGAGACCACCAT+GGG | 0.591708 | 5_3:-40459867 | None:intergenic |
| AATCAACTACAGAAAACCAT+AGG | 0.600606 | 5_3:+40461413 | Msa0811330:three_prime_UTR |
| CAAGACCTAAAGAGAGAACA+AGG | 0.605269 | 5_3:-40461055 | None:intergenic |
| ACTTAGGGTCACATCTTCAA+GGG | 0.607489 | 5_3:+40460685 | Msa0811330:CDS |
| TTAGTGCTTCTGAAGACAAG+AGG | 0.607790 | 5_3:+40455961 | Msa0811330:CDS |
| GGAACATGTGTGCATGGACG+AGG | 0.614286 | 5_3:+40459974 | Msa0811330:CDS |
| CATCTTGAATGATATTGCAA+AGG | 0.616559 | 5_3:-40461316 | None:intergenic |
| GCAGCAAAGAATCAAAGGAA+TGG | 0.619825 | 5_3:+40460785 | Msa0811330:CDS |
| GTTATCCTCTTGCTCCTCAG+AGG | 0.620085 | 5_3:-40455118 | None:intergenic |
| AACAAATATTACCTTGGACA+TGG | 0.622198 | 5_3:-40454889 | None:intergenic |
| GAACTTTGGGCTATATGGAG+AGG | 0.625001 | 5_3:+40461032 | Msa0811330:CDS |
| TCGAAATTCATCAAAGGACA+GGG | 0.630212 | 5_3:+40456092 | Msa0811330:CDS |
| GTTTGCAGTTACCATCTGAA+CGG | 0.645168 | 5_3:+40461371 | Msa0811330:three_prime_UTR |
| GTACTGGGAACATGTGTGCA+TGG | 0.648375 | 5_3:+40459968 | Msa0811330:CDS |
| GTTATTGCAGGCTCCCATGG+TGG | 0.653020 | 5_3:+40459854 | Msa0811330:intron |
| TTAGAAATGGGAATGACATG+AGG | 0.653800 | 5_3:+40454918 | Msa0811330:CDS |
| AGCACACGCACCTCACGGAG+CGG | 0.660577 | 5_3:-40453212 | None:intergenic |
| TTTGTCTCGAAAGCTCCCCA+AGG | 0.662704 | 5_3:+40460993 | Msa0811330:CDS |
| ATCATTCAAGATGATGCCAG+AGG | 0.674911 | 5_3:+40461326 | Msa0811330:CDS |
| GGACAAAGCAAAGTAATCGG+AGG | 0.679495 | 5_3:-40458043 | None:intergenic |
| ACCAAGAAAGTATCTCCTTG+GGG | 0.682738 | 5_3:-40461008 | None:intergenic |
| GATTCTCAACTATCCCTCTG+AGG | 0.687320 | 5_3:+40455104 | Msa0811330:intron |
| TGGACAAAACTCAATACCGA+CGG | 0.699612 | 5_3:+40460900 | Msa0811330:CDS |
| GCTTTCACATGAGACCACCA+TGG | 0.703420 | 5_3:-40459868 | None:intergenic |
| TGAGGCAGCTTCTGATAACG+TGG | 0.714427 | 5_3:-40455994 | None:intergenic |
| GTGGTCTCATGTGAAAGCCG+TGG | 0.720187 | 5_3:+40459873 | Msa0811330:CDS |
| GAATGAAGATCCGCTCCGTG+AGG | 0.720842 | 5_3:+40453202 | Msa0811330:CDS |
| GATTGTGACAAGACAAACAG+CGG | 0.720919 | 5_3:+40460585 | Msa0811330:CDS |
| TCTTCAAGGGAAGAAACACA+AGG | 0.746803 | 5_3:+40460698 | Msa0811330:CDS |
| GGTCTGCTTCGTGATTATCG+GGG | 0.768767 | 5_3:+40460954 | Msa0811330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATATAAAATAAAA+AGG | - | chr5_3:40454356-40454375 | None:intergenic | 0.0% |
| !! | TATTATAAAATAAAAAAATA+AGG | + | chr5_3:40457594-40457613 | Msa0811330:intron | 0.0% |
| !!! | TGTATGAATTTTTTTTTTTT+TGG | + | chr5_3:40454554-40454573 | Msa0811330:intron | 10.0% |
| !!! | GTATGAATTTTTTTTTTTTT+GGG | + | chr5_3:40454555-40454574 | Msa0811330:intron | 10.0% |
| !!! | TATGAATTTTTTTTTTTTTG+GGG | + | chr5_3:40454556-40454575 | Msa0811330:intron | 10.0% |
| !!! | ATTAAAAAAAAAAATGGATT+CGG | + | chr5_3:40457833-40457852 | Msa0811330:intron | 10.0% |
| !!! | TAAACAAATTTTGACTTTTT+AGG | - | chr5_3:40453676-40453695 | None:intergenic | 15.0% |
| !!! | AATTTGTTTATAATAATGAC+TGG | + | chr5_3:40453686-40453705 | Msa0811330:intron | 15.0% |
| !! | TATATCTTGAAATTATATGA+AGG | + | chr5_3:40453988-40454007 | Msa0811330:intron | 15.0% |
| !!! | TGTAATTAAGTTGAATAATT+AGG | - | chr5_3:40454095-40454114 | None:intergenic | 15.0% |
| !!! | TGTAATTAAGTTGAATAATT+AGG | - | chr5_3:40454095-40454114 | None:intergenic | 15.0% |
| !! | TTATCAAAAAATTATCTGAA+AGG | - | chr5_3:40455084-40455103 | None:intergenic | 15.0% |
| !!! | TTTTTTATGAAACATAATCA+TGG | + | chr5_3:40455291-40455310 | Msa0811330:intron | 15.0% |
| !! | AGGTATTAAAAATTGTAAAT+TGG | + | chr5_3:40455706-40455725 | Msa0811330:intron | 15.0% |
| !!! | AAGATGTAACTTTTTAATTA+TGG | - | chr5_3:40455762-40455781 | None:intergenic | 15.0% |
| !!! | AATAAAGTGTTAAGTTTTTA+TGG | - | chr5_3:40457578-40457597 | None:intergenic | 15.0% |
| !! | ATATAAAAAAGCAACATTAT+AGG | - | chr5_3:40457964-40457983 | None:intergenic | 15.0% |
| !! | ATAAATAAAATTGCTTACAA+AGG | - | chr5_3:40458067-40458086 | None:intergenic | 15.0% |
| !! | TAAAATGATAAATGTGTATT+TGG | - | chr5_3:40460336-40460355 | None:intergenic | 15.0% |
| !! | CATTTAATAAATGATGTATG+TGG | - | chr5_3:40453651-40453670 | None:intergenic | 20.0% |
| !!! | GTTTAAAACATAATATAGCA+GGG | + | chr5_3:40454010-40454029 | Msa0811330:intron | 20.0% |
| !! | ATCATTAATGAAATCTGTTT+GGG | - | chr5_3:40455214-40455233 | None:intergenic | 20.0% |
| !! | AATCATTAATGAAATCTGTT+TGG | - | chr5_3:40455215-40455234 | None:intergenic | 20.0% |
| !! | TAAAAAGTTACATCTTTAAG+AGG | + | chr5_3:40455766-40455785 | Msa0811330:intron | 20.0% |
| !! | ATTACACAGAAAATTGTTTA+AGG | - | chr5_3:40456654-40456673 | None:intergenic | 20.0% |
| !!! | AAAACAACAACATTAGTTTT+AGG | - | chr5_3:40457162-40457181 | None:intergenic | 20.0% |
| !! | TTTCTTATAATAAAAAGGAG+AGG | + | chr5_3:40457519-40457538 | Msa0811330:intron | 20.0% |
| !! | TTCTTATAATAAAAAGGAGA+GGG | + | chr5_3:40457520-40457539 | Msa0811330:intron | 20.0% |
| !!! | TTTTTATGGAAAACCTAATT+TGG | - | chr5_3:40457564-40457583 | None:intergenic | 20.0% |
| !!! | CTATTCTGTTAGTAATTTTA+TGG | + | chr5_3:40458385-40458404 | Msa0811330:intron | 20.0% |
| !! | TACTACTAAAAATAGATTCA+AGG | + | chr5_3:40458416-40458435 | Msa0811330:intron | 20.0% |
| !!! | TTTGCAATTTTGATTCATTT+AGG | + | chr5_3:40458476-40458495 | Msa0811330:intron | 20.0% |
| !!! | TTGCAATTTTGATTCATTTA+GGG | + | chr5_3:40458477-40458496 | Msa0811330:intron | 20.0% |
| !!! | ACTTTTAGAGTAGTTATAAT+GGG | - | chr5_3:40458551-40458570 | None:intergenic | 20.0% |
| !!! | TAAATGTATGTTTTGTTTGT+CGG | + | chr5_3:40458733-40458752 | Msa0811330:intron | 20.0% |
| !!! | AAAAGAGTAAACAAACATTT+TGG | - | chr5_3:40458859-40458878 | None:intergenic | 20.0% |
| !! | TCAACTATAACAATGAAATT+TGG | + | chr5_3:40458945-40458964 | Msa0811330:intron | 20.0% |
| !!! | ATTATTGAAATTCAAGTTTG+AGG | + | chr5_3:40458976-40458995 | Msa0811330:intron | 20.0% |
| !!! | TTATTGAAATTCAAGTTTGA+GGG | + | chr5_3:40458977-40458996 | Msa0811330:intron | 20.0% |
| !!! | AGTTTTAGTTATTAGTCTAT+TGG | + | chr5_3:40459123-40459142 | Msa0811330:intron | 20.0% |
| !! | AATAAAGATAATTGTTGTGT+TGG | - | chr5_3:40459159-40459178 | None:intergenic | 20.0% |
| !! | TACTTGGTTGAATTTATTAA+TGG | + | chr5_3:40459608-40459627 | Msa0811330:intron | 20.0% |
| !!! | CAAAATAAGGTATTAACAAT+AGG | - | chr5_3:40459906-40459925 | None:intergenic | 20.0% |
| !!! | CTATTGTTAATACCTTATTT+TGG | + | chr5_3:40459904-40459923 | Msa0811330:CDS | 20.0% |
| !! | AAGCATTAAAATCATCATAT+GGG | - | chr5_3:40460265-40460284 | None:intergenic | 20.0% |
| !!! | AAAGCATTAAAATCATCATA+TGG | - | chr5_3:40460266-40460285 | None:intergenic | 20.0% |
| !! | ATAACATTAATTTCTACCTA+TGG | - | chr5_3:40461432-40461451 | None:intergenic | 20.0% |
| !!! | AATAAGTTTGAGATATCATA+AGG | - | chr5_3:40461557-40461576 | None:intergenic | 20.0% |
| !! | TATGATATCTCAAACTTATT+TGG | + | chr5_3:40461557-40461576 | Msa0811330:three_prime_UTR | 20.0% |
| !!! | TTATTTTGATATACTTCCTC+TGG | + | chr5_3:40453555-40453574 | Msa0811330:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr5_3:40453612-40453631 | Msa0811330:intron | 25.0% |
| ! | TTGTTTATAATAATGACTGG+AGG | + | chr5_3:40453689-40453708 | Msa0811330:intron | 25.0% |
| ! | TGTTTATAATAATGACTGGA+GGG | + | chr5_3:40453690-40453709 | Msa0811330:intron | 25.0% |
| ! | GCAGTTAACTAACTAATTAA+AGG | - | chr5_3:40453860-40453879 | None:intergenic | 25.0% |
| !! | GGTTTAAAACATAATATAGC+AGG | + | chr5_3:40454009-40454028 | Msa0811330:intron | 25.0% |
| ! | TGAGAAAGAAATTATCTTGT+TGG | + | chr5_3:40454405-40454424 | Msa0811330:intron | 25.0% |
| !! | AAAATGTCATTTAACAGCTT+GGG | + | chr5_3:40454597-40454616 | Msa0811330:intron | 25.0% |
| ! | AAAAATTCTATCTAAAGACG+AGG | + | chr5_3:40454622-40454641 | Msa0811330:intron | 25.0% |
| ! | AAAATTCTATCTAAAGACGA+GGG | + | chr5_3:40454623-40454642 | Msa0811330:intron | 25.0% |
| ! | ATCTAACCAAAAATTTCTCA+GGG | - | chr5_3:40454769-40454788 | None:intergenic | 25.0% |
| ! | AATCTAACCAAAAATTTCTC+AGG | - | chr5_3:40454770-40454789 | None:intergenic | 25.0% |
| !! | AAAATTGGCTTATAAGTTAC+TGG | + | chr5_3:40455185-40455204 | Msa0811330:intron | 25.0% |
| ! | TCATTAATGAAATCTGTTTG+GGG | - | chr5_3:40455213-40455232 | None:intergenic | 25.0% |
| ! | AACTATTAGCTAATGAAGAA+AGG | + | chr5_3:40455316-40455335 | Msa0811330:intron | 25.0% |
| !!! | TATTGATAATGTCCTTTGAA+AGG | + | chr5_3:40455526-40455545 | Msa0811330:intron | 25.0% |
| !! | TTAATTTTGTAGACACCTTT+AGG | - | chr5_3:40455624-40455643 | None:intergenic | 25.0% |
| ! | GTTATCATCAAAACTCTTTA+AGG | - | chr5_3:40455685-40455704 | None:intergenic | 25.0% |
| !!! | AAAGAGTTTTGATGATAACA+AGG | + | chr5_3:40455686-40455705 | Msa0811330:intron | 25.0% |
| ! | TAATATTTGTTCAAGTGTAC+AGG | + | chr5_3:40455735-40455754 | Msa0811330:intron | 25.0% |
| ! | AACTGAATTTGAGAAATTCA+AGG | + | chr5_3:40456048-40456067 | Msa0811330:CDS | 25.0% |
| !! | ATTTCAAATTTGTTCCTCAT+AGG | + | chr5_3:40456324-40456343 | Msa0811330:intron | 25.0% |
| ! | AGAATCTGAAGACAAAAAAA+AGG | - | chr5_3:40457396-40457415 | None:intergenic | 25.0% |
| !!! | ATAAGGTCTTCCATTTTTTA+TGG | + | chr5_3:40457611-40457630 | Msa0811330:intron | 25.0% |
| !!! | TAAGGTCTTCCATTTTTTAT+GGG | + | chr5_3:40457612-40457631 | Msa0811330:intron | 25.0% |
| !!! | ATTTTTTATGGGCTTATGTT+GGG | + | chr5_3:40457623-40457642 | Msa0811330:intron | 25.0% |
| !! | AAAAAAAAATGGATTCGGAA+TGG | + | chr5_3:40457838-40457857 | Msa0811330:intron | 25.0% |
| !! | AAAAAAAATGGATTCGGAAT+GGG | + | chr5_3:40457839-40457858 | Msa0811330:intron | 25.0% |
| !!! | TTTTTATTTTTGTTGCATGC+AGG | + | chr5_3:40458020-40458039 | Msa0811330:intron | 25.0% |
| !! | AATTTGCACTGTTATTTAGT+TGG | + | chr5_3:40458262-40458281 | Msa0811330:CDS | 25.0% |
| ! | ATTATGTTCCGATTATTAGT+AGG | + | chr5_3:40458335-40458354 | Msa0811330:intron | 25.0% |
| ! | TTATGTTCCGATTATTAGTA+GGG | + | chr5_3:40458336-40458355 | Msa0811330:intron | 25.0% |
| !! | TTGTTTTCCCTACTAATAAT+CGG | - | chr5_3:40458346-40458365 | None:intergenic | 25.0% |
| !!! | CACTTTTAGAGTAGTTATAA+TGG | - | chr5_3:40458552-40458571 | None:intergenic | 25.0% |
| !! | AAGTGTCCAATGTTAAATTT+TGG | + | chr5_3:40458567-40458586 | Msa0811330:intron | 25.0% |
| !! | ATCTGAGTAAACAAACATTT+TGG | + | chr5_3:40458591-40458610 | Msa0811330:intron | 25.0% |
| ! | ATCTTCTCTTTGTAATTTCA+TGG | - | chr5_3:40458765-40458784 | None:intergenic | 25.0% |
| !! | TTACTCTTTTAACATCGAAT+TGG | + | chr5_3:40458869-40458888 | Msa0811330:intron | 25.0% |
| !! | TACTCTTTTAACATCGAATT+GGG | + | chr5_3:40458870-40458889 | Msa0811330:intron | 25.0% |
| ! | GATGTTAAAAAGTGATATCA+AGG | + | chr5_3:40458893-40458912 | Msa0811330:intron | 25.0% |
| !! | TATTGAAATTCAAGTTTGAG+GGG | + | chr5_3:40458978-40458997 | Msa0811330:intron | 25.0% |
| ! | ACTAAGAATAAGCAAAATAG+AGG | + | chr5_3:40459015-40459034 | Msa0811330:intron | 25.0% |
| !! | GCAATAATGTCTTAAAGTTT+TGG | + | chr5_3:40459066-40459085 | Msa0811330:intron | 25.0% |
| !!! | TAATGTCTTAAAGTTTTGGA+TGG | + | chr5_3:40459070-40459089 | Msa0811330:intron | 25.0% |
| ! | ATACTAAATTATGCAATGTC+AGG | - | chr5_3:40459517-40459536 | None:intergenic | 25.0% |
| ! | ATGGAAATAAAGTTAAGAGT+CGG | + | chr5_3:40459627-40459646 | Msa0811330:intron | 25.0% |
| !! | AGAAGGAACAAAAACAATTT+TGG | + | chr5_3:40459687-40459706 | Msa0811330:intron | 25.0% |
| !! | GAAGGAACAAAAACAATTTT+GGG | + | chr5_3:40459688-40459707 | Msa0811330:intron | 25.0% |
| !!! | CAGAAAAGCATTTTTAGAAT+CGG | + | chr5_3:40460077-40460096 | Msa0811330:CDS | 25.0% |
| ! | ATGAGTTGTAATAATTGTCT+GGG | - | chr5_3:40460163-40460182 | None:intergenic | 25.0% |
| ! | AATGAGTTGTAATAATTGTC+TGG | - | chr5_3:40460164-40460183 | None:intergenic | 25.0% |
| !! | GAAGAAACTTTTAGTATATC+AGG | + | chr5_3:40460191-40460210 | Msa0811330:CDS | 25.0% |
| !! | ACTTTTAGTATATCAGGTAT+TGG | + | chr5_3:40460197-40460216 | Msa0811330:intron | 25.0% |
| ! | ATTCGTATCACAAATTTACA+TGG | + | chr5_3:40460395-40460414 | Msa0811330:intron | 25.0% |
| ! | ACAAATTTACATGGATGTTA+TGG | + | chr5_3:40460404-40460423 | Msa0811330:intron | 25.0% |
| ! | GATTCAGAATATTTGCAATT+TGG | - | chr5_3:40460830-40460849 | None:intergenic | 25.0% |
| ! | TCTTGGGATAAAATCAATAT+GGG | + | chr5_3:40461073-40461092 | Msa0811330:CDS | 25.0% |
| ATCTATTACACTCTATTGTG+AGG | + | chr5_3:40453445-40453464 | Msa0811330:intron | 30.0% | |
| TTGTTTATAATAGTGACCAG+AGG | - | chr5_3:40453574-40453593 | None:intergenic | 30.0% | |
| TTTCTCACTTTACTCTTTGT+AGG | - | chr5_3:40453724-40453743 | None:intergenic | 30.0% | |
| ATAAATACCATATGAGCACT+CGG | + | chr5_3:40454159-40454178 | Msa0811330:intron | 30.0% | |
| ATAAATACCATATGAGCACT+CGG | + | chr5_3:40454159-40454178 | Msa0811330:intron | 30.0% | |
| ! | CTGTTAAATGACATTTTCGT+TGG | - | chr5_3:40454594-40454613 | None:intergenic | 30.0% |
| ! | GAAAATGTCATTTAACAGCT+TGG | + | chr5_3:40454596-40454615 | Msa0811330:intron | 30.0% |
| ATGAAAGCTAGATATAACTG+TGG | + | chr5_3:40454791-40454810 | Msa0811330:intron | 30.0% | |
| ! | ATGCTTTTCAATTGAACTTG+AGG | - | chr5_3:40454830-40454849 | None:intergenic | 30.0% |
| AACAAATATTACCTTGGACA+TGG | - | chr5_3:40454892-40454911 | None:intergenic | 30.0% | |
| ATGTCCAAGGTAATATTTGT+TGG | + | chr5_3:40454891-40454910 | Msa0811330:CDS | 30.0% | |
| TGTCCAAGGTAATATTTGTT+GGG | + | chr5_3:40454892-40454911 | Msa0811330:CDS | 30.0% | |
| ! | ATTTGTTGGGTGATTAGAAA+TGG | + | chr5_3:40454905-40454924 | Msa0811330:CDS | 30.0% |
| TTTGTTGGGTGATTAGAAAT+GGG | + | chr5_3:40454906-40454925 | Msa0811330:CDS | 30.0% | |
| TTCATAGAGTGTAAGGAAAT+TGG | - | chr5_3:40455028-40455047 | None:intergenic | 30.0% | |
| ATTTCCTTACACTCTATGAA+TGG | + | chr5_3:40455028-40455047 | Msa0811330:intron | 30.0% | |
| AGGATAACAATTTCGCTAAT+TGG | + | chr5_3:40455133-40455152 | Msa0811330:CDS | 30.0% | |
| !! | TGGTTGGTTTAGCTTAAAAT+TGG | + | chr5_3:40455170-40455189 | Msa0811330:intron | 30.0% |
| TTTCAACTATAACTTCACGT+TGG | + | chr5_3:40455233-40455252 | Msa0811330:intron | 30.0% | |
| AAAAAGACGCAAATTCAAGT+CGG | - | chr5_3:40455276-40455295 | None:intergenic | 30.0% | |
| ! | AATAAGTTAGCCTAATGATC+AGG | - | chr5_3:40455463-40455482 | None:intergenic | 30.0% |
| TCAATATTACCTAAGATTCC+AGG | - | chr5_3:40455512-40455531 | None:intergenic | 30.0% | |
| ! | ACGAGTTTTTATCCTTTCAA+AGG | - | chr5_3:40455541-40455560 | None:intergenic | 30.0% |
| GTCTACAAAATTAATGTCGA+TGG | + | chr5_3:40455630-40455649 | Msa0811330:intron | 30.0% | |
| ! | AGATTAGTGGAATTTTGCAA+CGG | + | chr5_3:40456117-40456136 | Msa0811330:CDS | 30.0% |
| ! | CAATAAACTTTTGCCTGATT+TGG | - | chr5_3:40456357-40456376 | None:intergenic | 30.0% |
| CAAATCAGGCAAAAGTTTAT+TGG | + | chr5_3:40456355-40456374 | Msa0811330:intron | 30.0% | |
| TCTTTCACACCTCTTTATAA+AGG | + | chr5_3:40456433-40456452 | Msa0811330:intron | 30.0% | |
| AACACTTGATATACAATCAG+AGG | - | chr5_3:40456628-40456647 | None:intergenic | 30.0% | |
| ACATTATAGTGAAATCTCCT+TGG | + | chr5_3:40456819-40456838 | Msa0811330:intron | 30.0% | |
| AAGACACAAAGCAATTATAC+TGG | - | chr5_3:40456886-40456905 | None:intergenic | 30.0% | |
| ! | AGCTTTTGATGAATTTTCCT+TGG | - | chr5_3:40457129-40457148 | None:intergenic | 30.0% |
| GATAATAGTTGTCAATGACA+AGG | - | chr5_3:40457268-40457287 | None:intergenic | 30.0% | |
| CAACATAAGCCCATAAAAAA+TGG | - | chr5_3:40457624-40457643 | None:intergenic | 30.0% | |
| !!! | CATTTTTTATGGGCTTATGT+TGG | + | chr5_3:40457622-40457641 | Msa0811330:intron | 30.0% |
| TTTCTTTCCCATTAAGACTT+CGG | + | chr5_3:40457766-40457785 | Msa0811330:intron | 30.0% | |
| TGTTAGTATAATACCAGGAA+AGG | - | chr5_3:40457902-40457921 | None:intergenic | 30.0% | |
| !! | AGAAGTGTTAGTATAATACC+AGG | - | chr5_3:40457907-40457926 | None:intergenic | 30.0% |
| AAAGGACAAAGCAAAGTAAT+CGG | - | chr5_3:40458049-40458068 | None:intergenic | 30.0% | |
| ! | GTTGCAGATATGTTTCTATT+CGG | + | chr5_3:40458154-40458173 | Msa0811330:intron | 30.0% |
| !!! | ATCAACGATGTCTTGTTTTT+TGG | + | chr5_3:40458205-40458224 | Msa0811330:CDS | 30.0% |
| !!! | TCAACGATGTCTTGTTTTTT+GGG | + | chr5_3:40458206-40458225 | Msa0811330:CDS | 30.0% |
| CAGATGCCAAAATTTAACAT+TGG | - | chr5_3:40458576-40458595 | None:intergenic | 30.0% | |
| ACTAACAAAAGACACATTCA+AGG | - | chr5_3:40458701-40458720 | None:intergenic | 30.0% | |
| ! | ACTCTTTTAACATCGAATTG+GGG | + | chr5_3:40458871-40458890 | Msa0811330:intron | 30.0% |
| GTCTAGAAAAACATTAAGGT+GGG | - | chr5_3:40459321-40459340 | None:intergenic | 30.0% | |
| TGTCTAGAAAAACATTAAGG+TGG | - | chr5_3:40459322-40459341 | None:intergenic | 30.0% | |
| TGGTGTCTAGAAAAACATTA+AGG | - | chr5_3:40459325-40459344 | None:intergenic | 30.0% | |
| !! | CATTTTAAGTGGCCATAAAA+CGG | - | chr5_3:40459450-40459469 | None:intergenic | 30.0% |
| !! | AAAAAAACCGCCATTTTAAG+TGG | - | chr5_3:40459461-40459480 | None:intergenic | 30.0% |
| !! | AAAAACAATTTTGGGTCAAG+AGG | + | chr5_3:40459696-40459715 | Msa0811330:intron | 30.0% |
| ! | CATTTTGAATTCGTTATTGC+AGG | + | chr5_3:40459842-40459861 | Msa0811330:intron | 30.0% |
| TTAATTAAACGCTACTGTAC+TGG | + | chr5_3:40459952-40459971 | Msa0811330:CDS | 30.0% | |
| TAATTAAACGCTACTGTACT+GGG | + | chr5_3:40459953-40459972 | Msa0811330:CDS | 30.0% | |
| ! | TGTGATTTTCAGATTGAAGA+TGG | - | chr5_3:40460007-40460026 | None:intergenic | 30.0% |
| TGGAAACATACTTTCTGAAT+CGG | + | chr5_3:40460047-40460066 | Msa0811330:CDS | 30.0% | |
| !!! | AAAGCATTTTTAGAATCGGA+TGG | + | chr5_3:40460081-40460100 | Msa0811330:CDS | 30.0% |
| !! | TAGCAAAAGTGTTGAAGAAT+CGG | + | chr5_3:40460107-40460126 | Msa0811330:CDS | 30.0% |
| ! | AAATGTGTATTTGGAGTTGA+TGG | - | chr5_3:40460327-40460346 | None:intergenic | 30.0% |
| ACACGATGATTAGCATTAAT+TGG | - | chr5_3:40460451-40460470 | None:intergenic | 30.0% | |
| TAAGAAAGTTGTTTGCATCA+GGG | + | chr5_3:40460543-40460562 | Msa0811330:intron | 30.0% | |
| AAGTAAAAAGAAAGTCCAGA+AGG | + | chr5_3:40460617-40460636 | Msa0811330:CDS | 30.0% | |
| CATATTATGGATCTAGAAAC+TGG | - | chr5_3:40460852-40460871 | None:intergenic | 30.0% | |
| ! | CAGTTTCTAGATCCATAATA+TGG | + | chr5_3:40460850-40460869 | Msa0811330:CDS | 30.0% |
| TTTCCATTCACACCATATTA+TGG | - | chr5_3:40460865-40460884 | None:intergenic | 30.0% | |
| ! | TTCTTTATTTACAGAACCGT+CGG | - | chr5_3:40460919-40460938 | None:intergenic | 30.0% |
| TCTGTAAATAAAGAAACAGC+TGG | + | chr5_3:40460924-40460943 | Msa0811330:CDS | 30.0% | |
| !! | AATAAAGAAACAGCTGGTTT+TGG | + | chr5_3:40460930-40460949 | Msa0811330:CDS | 30.0% |
| GTCTTGGGATAAAATCAATA+TGG | + | chr5_3:40461072-40461091 | Msa0811330:CDS | 30.0% | |
| AAACCTGTGTGAAAAAAATC+TGG | + | chr5_3:40461159-40461178 | Msa0811330:CDS | 30.0% | |
| !!! | TTTCCAGATTTTTTTCACAC+AGG | - | chr5_3:40461165-40461184 | None:intergenic | 30.0% |
| CATCTTGAATGATATTGCAA+AGG | - | chr5_3:40461319-40461338 | None:intergenic | 30.0% | |
| ! | TCTTAGATATTTTGTTCCTC+TGG | - | chr5_3:40461345-40461364 | None:intergenic | 30.0% |
| GAGGAACAAAATATCTAAGA+CGG | + | chr5_3:40461345-40461364 | Msa0811330:CDS | 30.0% | |
| AATCAACTACAGAAAACCAT+AGG | + | chr5_3:40461413-40461432 | Msa0811330:three_prime_UTR | 30.0% | |
| ATGTTATAGCTTCCATTTAG+TGG | + | chr5_3:40461445-40461464 | Msa0811330:three_prime_UTR | 30.0% | |
| ATGTCAACTTAACCACTAAA+TGG | - | chr5_3:40461460-40461479 | None:intergenic | 30.0% | |
| ATGAATGGATCCAAAAGGTT+CGG | + | chr5_3:40453156-40453175 | Msa0811330:CDS | 35.0% | |
| TTTCGCTTGATATAATCCGT+TGG | + | chr5_3:40453313-40453332 | Msa0811330:intron | 35.0% | |
| TATGACACATGACAATGATG+TGG | + | chr5_3:40453474-40453493 | Msa0811330:intron | 35.0% | |
| AAGTTTGCATTGTGTAGTCA+CGG | - | chr5_3:40454493-40454512 | None:intergenic | 35.0% | |
| ! | ATGACATTTTCGTTGGTCAA+TGG | - | chr5_3:40454587-40454606 | None:intergenic | 35.0% |
| ! | TTCCAACCCTGAGAAATTTT+TGG | + | chr5_3:40454760-40454779 | Msa0811330:intron | 35.0% |
| AACCAAAAATTTCTCAGGGT+TGG | - | chr5_3:40454765-40454784 | None:intergenic | 35.0% | |
| TCACCCAACAAATATTACCT+TGG | - | chr5_3:40454898-40454917 | None:intergenic | 35.0% | |
| TTAGAAATGGGAATGACATG+AGG | + | chr5_3:40454918-40454937 | Msa0811330:CDS | 35.0% | |
| !! | TGAGGTTTTTGAAAGATGCT+TGG | + | chr5_3:40454936-40454955 | Msa0811330:CDS | 35.0% |
| GATTCCAAGATGCTAAGATT+CGG | - | chr5_3:40454965-40454984 | None:intergenic | 35.0% | |
| AGTTCCATTCATAGAGTGTA+AGG | - | chr5_3:40455035-40455054 | None:intergenic | 35.0% | |
| TACACTCTATGAATGGAACT+TGG | + | chr5_3:40455035-40455054 | Msa0811330:intron | 35.0% | |
| AATTGGACTCTCTTTGTAGA+TGG | + | chr5_3:40455150-40455169 | Msa0811330:CDS | 35.0% | |
| ACTATAACTTCACGTTGGAT+TGG | + | chr5_3:40455238-40455257 | Msa0811330:intron | 35.0% | |
| AAAAGACGCAAATTCAAGTC+GGG | - | chr5_3:40455275-40455294 | None:intergenic | 35.0% | |
| ACTATCACAACTAAGAGCAA+AGG | - | chr5_3:40455368-40455387 | None:intergenic | 35.0% | |
| ! | TTGAAGAATTGCCTGAGTTT+TGG | + | chr5_3:40455422-40455441 | Msa0811330:intron | 35.0% |
| CATAACAAGACCTGATCATT+AGG | + | chr5_3:40455450-40455469 | Msa0811330:intron | 35.0% | |
| TCGTTAATCTTCTTCGAACA+TGG | + | chr5_3:40455557-40455576 | Msa0811330:intron | 35.0% | |
| ACTGATAGAAGTTAGGTTCA+CGG | + | chr5_3:40455588-40455607 | Msa0811330:intron | 35.0% | |
| ! | ATTTTGTAGACACCTTTAGG+AGG | - | chr5_3:40455621-40455640 | None:intergenic | 35.0% |
| !! | AGGTTCTGAATGAGCAAATA+AGG | + | chr5_3:40455786-40455805 | Msa0811330:intron | 35.0% |
| ATGAGCAAATAAGGAGCAAA+AGG | + | chr5_3:40455795-40455814 | Msa0811330:intron | 35.0% | |
| ! | ATTTTCAGCTTCTGGTGAAA+TGG | - | chr5_3:40456027-40456046 | None:intergenic | 35.0% |
| !! | TTCAGTTGATTTTCAGCTTC+TGG | - | chr5_3:40456035-40456054 | None:intergenic | 35.0% |
| !! | AGGATTCAAGTGTTGTTTCA+TGG | + | chr5_3:40456068-40456087 | Msa0811330:CDS | 35.0% |
| CATGGATCGAAATTCATCAA+AGG | + | chr5_3:40456086-40456105 | Msa0811330:CDS | 35.0% | |
| ATCGAAATTCATCAAAGGAC+AGG | + | chr5_3:40456091-40456110 | Msa0811330:CDS | 35.0% | |
| TCGAAATTCATCAAAGGACA+GGG | + | chr5_3:40456092-40456111 | Msa0811330:CDS | 35.0% | |
| ! | TTTTGCAACGGTCATTTCAA+AGG | + | chr5_3:40456129-40456148 | Msa0811330:CDS | 35.0% |
| !! | GTCATTTCAAAGGTGTTTGA+AGG | + | chr5_3:40456139-40456158 | Msa0811330:CDS | 35.0% |
| AAGAAAACAGCTCCAGAATA+CGG | + | chr5_3:40456264-40456283 | Msa0811330:intron | 35.0% | |
| CAAAGATGTTCCTTTGGATA+AGG | + | chr5_3:40456296-40456315 | Msa0811330:intron | 35.0% | |
| ATGTTCCTTTGGATAAGGAA+TGG | + | chr5_3:40456301-40456320 | Msa0811330:intron | 35.0% | |
| GAAATCCATTCCTTATCCAA+AGG | - | chr5_3:40456309-40456328 | None:intergenic | 35.0% | |
| ! | GATTTGGTTATTGTCCTATG+AGG | - | chr5_3:40456341-40456360 | None:intergenic | 35.0% |
| CATAGGACAATAACCAAATC+AGG | + | chr5_3:40456341-40456360 | Msa0811330:intron | 35.0% | |
| GTCTTCACTCCTTTATAAAG+AGG | - | chr5_3:40456445-40456464 | None:intergenic | 35.0% | |
| TTGATTGTGTTCTTGAGCAT+AGG | + | chr5_3:40456723-40456742 | Msa0811330:CDS | 35.0% | |
| TAATCAGAATCTGAAAGCAG+CGG | - | chr5_3:40456934-40456953 | None:intergenic | 35.0% | |
| AGGTGAGAAAAACACAAGAA+GGG | - | chr5_3:40457044-40457063 | None:intergenic | 35.0% | |
| AAGGTGAGAAAAACACAAGA+AGG | - | chr5_3:40457045-40457064 | None:intergenic | 35.0% | |
| ! | TGTTTTTCTCACCTTCAGAT+GGG | + | chr5_3:40457050-40457069 | Msa0811330:intron | 35.0% |
| TGACATGTTCATGATTACCA+AGG | + | chr5_3:40457109-40457128 | Msa0811330:intron | 35.0% | |
| AGAAATTGAGACGTTGCAAT+AGG | - | chr5_3:40457313-40457332 | None:intergenic | 35.0% | |
| ATTATGACCTTAACGAGCTA+AGG | - | chr5_3:40457370-40457389 | None:intergenic | 35.0% | |
| TTAGCTCGTTAAGGTCATAA+TGG | + | chr5_3:40457369-40457388 | Msa0811330:intron | 35.0% | |
| AGAGTATAAGAGGCCAAATT+AGG | + | chr5_3:40457548-40457567 | Msa0811330:intron | 35.0% | |
| !! | AAGCTGTATTGACTGACTTA+TGG | + | chr5_3:40457692-40457711 | Msa0811330:intron | 35.0% |
| TTTCACTCCGAAGTCTTAAT+GGG | - | chr5_3:40457776-40457795 | None:intergenic | 35.0% | |
| ! | TTTTCACTCCGAAGTCTTAA+TGG | - | chr5_3:40457777-40457796 | None:intergenic | 35.0% |
| AGTATAATACCAGGAAAGGA+TGG | - | chr5_3:40457898-40457917 | None:intergenic | 35.0% | |
| ! | ATATGTTTCTATTCGGACGT+TGG | + | chr5_3:40458161-40458180 | Msa0811330:CDS | 35.0% |
| ! | AGTAGGGAAAACAACCATTT+TGG | + | chr5_3:40458352-40458371 | Msa0811330:intron | 35.0% |
| ACTGATAAAAGAGACATGTG+TGG | + | chr5_3:40458448-40458467 | Msa0811330:intron | 35.0% | |
| TACAAAGAGAAGATACACTG+AGG | + | chr5_3:40458771-40458790 | Msa0811330:intron | 35.0% | |
| ACAAAGAGAAGATACACTGA+GGG | + | chr5_3:40458772-40458791 | Msa0811330:intron | 35.0% | |
| ! | GACATTTTCTCTCACATTTG+TGG | + | chr5_3:40458832-40458851 | Msa0811330:intron | 35.0% |
| ! | GATAATTGTTGTGTTGGCAA+GGG | - | chr5_3:40459153-40459172 | None:intergenic | 35.0% |
| ! | AGATAATTGTTGTGTTGGCA+AGG | - | chr5_3:40459154-40459173 | None:intergenic | 35.0% |
| TAGCATCATTTCATTGACCA+AGG | - | chr5_3:40459246-40459265 | None:intergenic | 35.0% | |
| ! | TGACCAGTGCTGTTAAATAT+TGG | + | chr5_3:40459350-40459369 | Msa0811330:intron | 35.0% |
| TGACCAATATTTAACAGCAC+TGG | - | chr5_3:40459356-40459375 | None:intergenic | 35.0% | |
| CTGTTAAATATTGGTCACCA+TGG | + | chr5_3:40459359-40459378 | Msa0811330:intron | 35.0% | |
| TTAAATATTGGTCACCATGG+TGG | + | chr5_3:40459362-40459381 | Msa0811330:intron | 35.0% | |
| ! | CGTTTTATGGCCACTTAAAA+TGG | + | chr5_3:40459448-40459467 | Msa0811330:intron | 35.0% |
| TTTATGGCCACTTAAAATGG+CGG | + | chr5_3:40459451-40459470 | Msa0811330:intron | 35.0% | |
| TATAGCATTCACATGCATGT+TGG | + | chr5_3:40459534-40459553 | Msa0811330:intron | 35.0% | |
| ATGCTCAAAAGCAATACCAA+AGG | - | chr5_3:40459563-40459582 | None:intergenic | 35.0% | |
| ! | TATTTCTGTACTCGTCTACT+TGG | + | chr5_3:40459592-40459611 | Msa0811330:intron | 35.0% |
| ATAAAGTTAAGAGTCGGAGT+AGG | + | chr5_3:40459633-40459652 | Msa0811330:intron | 35.0% | |
| GAAACTAGACACAAATCAGA+AGG | + | chr5_3:40459670-40459689 | Msa0811330:intron | 35.0% | |
| AGCTAGGTTGTGAAAGAAAA+AGG | + | chr5_3:40459719-40459738 | Msa0811330:intron | 35.0% | |
| TAACAATAGGATAGTTGCCA+CGG | - | chr5_3:40459893-40459912 | None:intergenic | 35.0% | |
| CATACTTTCTGAATCGGATA+CGG | + | chr5_3:40460053-40460072 | Msa0811330:CDS | 35.0% | |
| ATACTTTCTGAATCGGATAC+GGG | + | chr5_3:40460054-40460073 | Msa0811330:CDS | 35.0% | |
| TATGGTAATCACCACATACA+AGG | + | chr5_3:40460422-40460441 | Msa0811330:intron | 35.0% | |
| ! | TTAATTGGTCTCCTTGTATG+TGG | - | chr5_3:40460436-40460455 | None:intergenic | 35.0% |
| AGAATATACACCACAAGACT+TGG | + | chr5_3:40460476-40460495 | Msa0811330:intron | 35.0% | |
| CTAAGAAAGTTGTTTGCATC+AGG | + | chr5_3:40460542-40460561 | Msa0811330:intron | 35.0% | |
| AAGAAAGTTGTTTGCATCAG+GGG | + | chr5_3:40460544-40460563 | Msa0811330:intron | 35.0% | |
| AAAAGAAAGTCCAGAAGGAA+TGG | + | chr5_3:40460622-40460641 | Msa0811330:CDS | 35.0% | |
| ACTGCAAGTGAAAATCACTT+AGG | + | chr5_3:40460669-40460688 | Msa0811330:CDS | 35.0% | |
| CTGCAAGTGAAAATCACTTA+GGG | + | chr5_3:40460670-40460689 | Msa0811330:CDS | 35.0% | |
| AAGGAAAAAGAACTTCGAGT+TGG | + | chr5_3:40460723-40460742 | Msa0811330:CDS | 35.0% | |
| ! | AGGAAAAAGAACTTCGAGTT+GGG | + | chr5_3:40460724-40460743 | Msa0811330:CDS | 35.0% |
| TGCGTAAAGGATAGAACATA+CGG | - | chr5_3:40460768-40460787 | None:intergenic | 35.0% | |
| TTTGATTCTTTGCTGCGTAA+AGG | - | chr5_3:40460781-40460800 | None:intergenic | 35.0% | |
| TTTACGCAGCAAAGAATCAA+AGG | + | chr5_3:40460780-40460799 | Msa0811330:CDS | 35.0% | |
| GATCCATAATATGGTGTGAA+TGG | + | chr5_3:40460859-40460878 | Msa0811330:CDS | 35.0% | |
| ATACTTTCTTGGTGGAACTT+TGG | + | chr5_3:40461018-40461037 | Msa0811330:CDS | 35.0% | |
| TACTTTCTTGGTGGAACTTT+GGG | + | chr5_3:40461019-40461038 | Msa0811330:CDS | 35.0% | |
| TTGTTCTCTCTTTAGGTCTT+GGG | + | chr5_3:40461057-40461076 | Msa0811330:CDS | 35.0% | |
| TGAGTAAGTTTGATGAGTCT+CGG | + | chr5_3:40461189-40461208 | Msa0811330:CDS | 35.0% | |
| ! | CAATCACAAACCGAACCTTT+TGG | - | chr5_3:40453169-40453188 | None:intergenic | 40.0% |
| !! | CGGTGATTGATTTGAAGGAA+TGG | + | chr5_3:40453235-40453254 | Msa0811330:intron | 40.0% |
| ATAACGCATGATGCATCCAA+CGG | - | chr5_3:40453332-40453351 | None:intergenic | 40.0% | |
| ATTCTATCTAAAGACGAGGG+AGG | + | chr5_3:40454626-40454645 | Msa0811330:intron | 40.0% | |
| TTCTATCTAAAGACGAGGGA+GGG | + | chr5_3:40454627-40454646 | Msa0811330:intron | 40.0% | |
| CCAACTTAAGCATATGTGCT+TGG | - | chr5_3:40454682-40454701 | None:intergenic | 40.0% | |
| CCAAGCACATATGCTTAAGT+TGG | + | chr5_3:40454679-40454698 | Msa0811330:intron | 40.0% | |
| !! | CACATATGCTTAAGTTGGCA+TGG | + | chr5_3:40454684-40454703 | Msa0811330:intron | 40.0% |
| CCAACTTAAGCATATGTGCT+TGG | - | chr5_3:40454682-40454701 | None:intergenic | 40.0% | |
| CCAAGCACATATGCTTAAGT+TGG | + | chr5_3:40454679-40454698 | Msa0811330:intron | 40.0% | |
| !! | CACATATGCTTAAGTTGGCA+TGG | + | chr5_3:40454684-40454703 | Msa0811330:intron | 40.0% |
| GATTCCGAATCTTAGCATCT+TGG | + | chr5_3:40454958-40454977 | Msa0811330:CDS | 40.0% | |
| !! | CTTGGAATCGATTTTTCCAC+AGG | + | chr5_3:40454976-40454995 | Msa0811330:CDS | 40.0% |
| TTTCCACAGGTTATTCCTCA+AGG | + | chr5_3:40454989-40455008 | Msa0811330:intron | 40.0% | |
| TCACAACTAAGAGCAAAGGT+CGG | - | chr5_3:40455364-40455383 | None:intergenic | 40.0% | |
| TAAAGTATGCATGCTCGACT+CGG | - | chr5_3:40455395-40455414 | None:intergenic | 40.0% | |
| GTTATGCTAGTCCAAAACTC+AGG | - | chr5_3:40455436-40455455 | None:intergenic | 40.0% | |
| GTGAACCTAACTTCTATCAG+TGG | - | chr5_3:40455589-40455608 | None:intergenic | 40.0% | |
| CTGATAGAAGTTAGGTTCAC+GGG | + | chr5_3:40455589-40455608 | Msa0811330:intron | 40.0% | |
| TGATAGAAGTTAGGTTCACG+GGG | + | chr5_3:40455590-40455609 | Msa0811330:intron | 40.0% | |
| !! | CTTCAGAAGCACTAATCTTC+AGG | - | chr5_3:40455956-40455975 | None:intergenic | 40.0% |
| ! | TTAGTGCTTCTGAAGACAAG+AGG | + | chr5_3:40455961-40455980 | Msa0811330:CDS | 40.0% |
| AAAGGACAGGGAAAGATTAG+TGG | + | chr5_3:40456104-40456123 | Msa0811330:CDS | 40.0% | |
| ! | AAGGCATGTGCTTGCAATTT+TGG | + | chr5_3:40456158-40456177 | Msa0811330:intron | 40.0% |
| TGGTTGTACAGTTCGTACAA+AGG | - | chr5_3:40456204-40456223 | None:intergenic | 40.0% | |
| ! | CAAAAACAGAGTAGTGGAGA+AGG | - | chr5_3:40456227-40456246 | None:intergenic | 40.0% |
| TGGACACAAAAACAGAGTAG+TGG | - | chr5_3:40456233-40456252 | None:intergenic | 40.0% | |
| ! | TGTTTTCTTGTCTTGTAGCG+TGG | - | chr5_3:40456253-40456272 | None:intergenic | 40.0% |
| ATCCAAAGGAACATCTTTGC+AGG | - | chr5_3:40456295-40456314 | None:intergenic | 40.0% | |
| GGAGTGAAGACTTAGAGATT+TGG | + | chr5_3:40456454-40456473 | Msa0811330:intron | 40.0% | |
| ATGCAGAACAATTTCAGCAG+AGG | - | chr5_3:40456523-40456542 | None:intergenic | 40.0% | |
| ! | AAATCTCCTTGGAAGTGCAA+GGG | + | chr5_3:40456830-40456849 | Msa0811330:intron | 40.0% |
| TGAGAAAAACACAAGAAGGG+GGG | - | chr5_3:40457041-40457060 | None:intergenic | 40.0% | |
| GTGAGAAAAACACAAGAAGG+GGG | - | chr5_3:40457042-40457061 | None:intergenic | 40.0% | |
| GGTGAGAAAAACACAAGAAG+GGG | - | chr5_3:40457043-40457062 | None:intergenic | 40.0% | |
| ! | GTGTTTTTCTCACCTTCAGA+TGG | + | chr5_3:40457049-40457068 | Msa0811330:intron | 40.0% |
| ATCATGAACATGTCATCCAC+AGG | - | chr5_3:40457104-40457123 | None:intergenic | 40.0% | |
| GACGTTGCAATAGGAGATAA+AGG | - | chr5_3:40457304-40457323 | None:intergenic | 40.0% | |
| GCAAAATCCTTAGCTCGTTA+AGG | + | chr5_3:40457360-40457379 | Msa0811330:intron | 40.0% | |
| ! | GAGGGAGAAAAGAGTATAAG+AGG | + | chr5_3:40457538-40457557 | Msa0811330:intron | 40.0% |
| TCAATACAGCTTCCTTCCTT+CGG | - | chr5_3:40457684-40457703 | None:intergenic | 40.0% | |
| AAGCACGTTGTTGCATTGTA+CGG | - | chr5_3:40457734-40457753 | None:intergenic | 40.0% | |
| !! | GGGAAAACAACCATTTTGGT+CGG | + | chr5_3:40458356-40458375 | Msa0811330:intron | 40.0% |
| ! | GTCTCTTTTATCAGTCGTGT+TGG | - | chr5_3:40458443-40458462 | None:intergenic | 40.0% |
| TGACAACGAGTTACACTTTC+AGG | + | chr5_3:40458507-40458526 | Msa0811330:intron | 40.0% | |
| GACAACGAGTTACACTTTCA+GGG | + | chr5_3:40458508-40458527 | Msa0811330:intron | 40.0% | |
| TAATGGGAAAACCAACACCT+TGG | - | chr5_3:40458535-40458554 | None:intergenic | 40.0% | |
| ! | GTGATAACGTGACACATTCA+AGG | - | chr5_3:40458618-40458637 | None:intergenic | 40.0% |
| !!! | GTATGTTTTGTTTGTCGGTC+TGG | + | chr5_3:40458738-40458757 | Msa0811330:intron | 40.0% |
| GTAGCTTCTTCATTGCTTTG+AGG | + | chr5_3:40459210-40459229 | Msa0811330:intron | 40.0% | |
| ! | TTTGAGGTTGACTACTACCT+TGG | + | chr5_3:40459226-40459245 | Msa0811330:intron | 40.0% |
| CATCCTTCACAAATTGGCAA+TGG | - | chr5_3:40459416-40459435 | None:intergenic | 40.0% | |
| CATTGCCAATTTGTGAAGGA+TGG | + | chr5_3:40459414-40459433 | Msa0811330:intron | 40.0% | |
| TTACTTTCTGCCATCCGAAA+TGG | + | chr5_3:40459480-40459499 | Msa0811330:intron | 40.0% | |
| AGGAGCAGTGTTATCCATTT+CGG | - | chr5_3:40459497-40459516 | None:intergenic | 40.0% | |
| CTCAGAACAATCATCATCAC+TGG | + | chr5_3:40459770-40459789 | Msa0811330:intron | 40.0% | |
| TATTGCGCAGCACCAAAATA+AGG | - | chr5_3:40459919-40459938 | None:intergenic | 40.0% | |
| ! | CACACATTTTGAATTGAGCG+AGG | + | chr5_3:40460023-40460042 | Msa0811330:CDS | 40.0% |
| ! | CATTTTGAATTGAGCGAGGA+TGG | + | chr5_3:40460027-40460046 | Msa0811330:CDS | 40.0% |
| GATTGTGACAAGACAAACAG+CGG | + | chr5_3:40460585-40460604 | Msa0811330:CDS | 40.0% | |
| ACTTAGGGTCACATCTTCAA+GGG | + | chr5_3:40460685-40460704 | Msa0811330:CDS | 40.0% | |
| TCTTCAAGGGAAGAAACACA+AGG | + | chr5_3:40460698-40460717 | Msa0811330:CDS | 40.0% | |
| GCAGCAAAGAATCAAAGGAA+TGG | + | chr5_3:40460785-40460804 | Msa0811330:CDS | 40.0% | |
| ATGGTGTGAATGGAAAAAGC+CGG | + | chr5_3:40460869-40460888 | Msa0811330:CDS | 40.0% | |
| GAATGGAAAAAGCCGGAATT+CGG | + | chr5_3:40460876-40460895 | Msa0811330:CDS | 40.0% | |
| !! | AGTTTTGTCCATCCGAATTC+CGG | - | chr5_3:40460891-40460910 | None:intergenic | 40.0% |
| TGGACAAAACTCAATACCGA+CGG | + | chr5_3:40460900-40460919 | Msa0811330:CDS | 40.0% | |
| !!! | AAAGAAACAGCTGGTTTTGG+TGG | + | chr5_3:40460933-40460952 | Msa0811330:CDS | 40.0% |
| TTCGAGACAAATGCGCAAAT+TGG | - | chr5_3:40460984-40461003 | None:intergenic | 40.0% | |
| !! | ACCAAGAAAGTATCTCCTTG+GGG | - | chr5_3:40461011-40461030 | None:intergenic | 40.0% |
| !! | CACCAAGAAAGTATCTCCTT+GGG | - | chr5_3:40461012-40461031 | None:intergenic | 40.0% |
| CAAGACCTAAAGAGAGAACA+AGG | - | chr5_3:40461058-40461077 | None:intergenic | 40.0% | |
| CTTGTTCTCTCTTTAGGTCT+TGG | + | chr5_3:40461056-40461075 | Msa0811330:CDS | 40.0% | |
| GATTGTCTTCACAACACTCA+TGG | - | chr5_3:40461111-40461130 | None:intergenic | 40.0% | |
| ! | TTCACACAGGTTTCAGCTTT+TGG | - | chr5_3:40461152-40461171 | None:intergenic | 40.0% |
| AGCAGATCATCTTGCAAAGA+TGG | + | chr5_3:40461244-40461263 | Msa0811330:CDS | 40.0% | |
| !! | GTGGAAATGATGTGGTTTTG+TGG | + | chr5_3:40461273-40461292 | Msa0811330:CDS | 40.0% |
| AGGCTATGTGAAAAATCAGC+TGG | - | chr5_3:40461299-40461318 | None:intergenic | 40.0% | |
| ATCATTCAAGATGATGCCAG+AGG | + | chr5_3:40461326-40461345 | Msa0811330:CDS | 40.0% | |
| GTTTGCAGTTACCATCTGAA+CGG | + | chr5_3:40461371-40461390 | Msa0811330:three_prime_UTR | 40.0% | |
| !! | GTGCTCGGTGATTGATTTGA+AGG | + | chr5_3:40453230-40453249 | Msa0811330:intron | 45.0% |
| AAGGAATGGCGCTAGTGTAA+CGG | + | chr5_3:40453249-40453268 | Msa0811330:intron | 45.0% | |
| CTGATTCTCTGTCTTTCACG+CGG | + | chr5_3:40453275-40453294 | Msa0811330:intron | 45.0% | |
| TGATTCTCTGTCTTTCACGC+GGG | + | chr5_3:40453276-40453295 | Msa0811330:intron | 45.0% | |
| AATACCATATGAGCACTCGG+TGG | + | chr5_3:40454162-40454181 | Msa0811330:intron | 45.0% | |
| AATACCATATGAGCACTCGG+TGG | + | chr5_3:40454162-40454181 | Msa0811330:intron | 45.0% | |
| GTAGTCACGGATACTTGTCA+AGG | - | chr5_3:40454480-40454499 | None:intergenic | 45.0% | |
| CACAGGTTATTCCTCAAGGT+CGG | + | chr5_3:40454993-40455012 | Msa0811330:intron | 45.0% | |
| GGAAAATTACTCCGACCTTG+AGG | - | chr5_3:40455007-40455026 | None:intergenic | 45.0% | |
| GATTCTCAACTATCCCTCTG+AGG | + | chr5_3:40455104-40455123 | Msa0811330:intron | 45.0% | |
| TTATCCTCTTGCTCCTCAGA+GGG | - | chr5_3:40455120-40455139 | None:intergenic | 45.0% | |
| GGACTCTCTTTGTAGATGGT+TGG | + | chr5_3:40455154-40455173 | Msa0811330:intron | 45.0% | |
| ! | ACTTCACGTTGGATTGGAAG+TGG | + | chr5_3:40455244-40455263 | Msa0811330:intron | 45.0% |
| ! | CTTCACGTTGGATTGGAAGT+GGG | + | chr5_3:40455245-40455264 | Msa0811330:intron | 45.0% |
| AAAGTATGCATGCTCGACTC+GGG | - | chr5_3:40455394-40455413 | None:intergenic | 45.0% | |
| TTAGCCTCGACCTTCATACT+TGG | + | chr5_3:40455482-40455501 | Msa0811330:intron | 45.0% | |
| CCTAACTTCTATCAGTGGCA+TGG | - | chr5_3:40455584-40455603 | None:intergenic | 45.0% | |
| CCATGCCACTGATAGAAGTT+AGG | + | chr5_3:40455581-40455600 | Msa0811330:intron | 45.0% | |
| ! | TTGTAGACACCTTTAGGAGG+AGG | - | chr5_3:40455618-40455637 | None:intergenic | 45.0% |
| ! | TTCAGGAGCATATTGCCTTC+AGG | - | chr5_3:40455848-40455867 | None:intergenic | 45.0% |
| !! | AGGAGCACTTTACTCTCTTC+AGG | - | chr5_3:40455901-40455920 | None:intergenic | 45.0% |
| TGGTGAAATGGCTTCTGATG+AGG | - | chr5_3:40456015-40456034 | None:intergenic | 45.0% | |
| ! | AAACAGAGTAGTGGAGAAGG+TGG | - | chr5_3:40456224-40456243 | None:intergenic | 45.0% |
| ACAACGACTCTTTGATGTGC+TGG | + | chr5_3:40456395-40456414 | Msa0811330:intron | 45.0% | |
| TGCAAAGTGTGCTTGAGCAA+AGG | + | chr5_3:40456754-40456773 | Msa0811330:CDS | 45.0% | |
| ! | GAAATCTCCTTGGAAGTGCA+AGG | + | chr5_3:40456829-40456848 | Msa0811330:intron | 45.0% |
| ! | AATCTCCTTGGAAGTGCAAG+GGG | + | chr5_3:40456831-40456850 | Msa0811330:intron | 45.0% |
| !! | ATACTGGTTCCTCCACAATC+CGG | - | chr5_3:40456870-40456889 | None:intergenic | 45.0% |
| TAATCATGCGACCCATCTGA+AGG | - | chr5_3:40457064-40457083 | None:intergenic | 45.0% | |
| TTCAGATGGGTCGCATGATT+AGG | + | chr5_3:40457063-40457082 | Msa0811330:intron | 45.0% | |
| GTCAATGGTAATTCGACCTG+TGG | + | chr5_3:40457085-40457104 | Msa0811330:intron | 45.0% | |
| GTGATCTTCTTCACGCTATC+AGG | + | chr5_3:40457196-40457215 | Msa0811330:intron | 45.0% | |
| TATGGGCTTATGTTGGGAAG+TGG | + | chr5_3:40457629-40457648 | Msa0811330:intron | 45.0% | |
| ATGGGCTTATGTTGGGAAGT+GGG | + | chr5_3:40457630-40457649 | Msa0811330:intron | 45.0% | |
| AGAAACCCAATGAAAGCCGA+AGG | + | chr5_3:40457665-40457684 | Msa0811330:intron | 45.0% | |
| TCCTTCCTTCGGCTTTCATT+GGG | - | chr5_3:40457673-40457692 | None:intergenic | 45.0% | |
| TTCCTTCCTTCGGCTTTCAT+TGG | - | chr5_3:40457674-40457693 | None:intergenic | 45.0% | |
| GGAAAGGATGGTGAGTGATT+TGG | - | chr5_3:40457886-40457905 | None:intergenic | 45.0% | |
| AATCACTCACCATCCTTTCC+TGG | + | chr5_3:40457886-40457905 | Msa0811330:intron | 45.0% | |
| GGACAAAGCAAAGTAATCGG+AGG | - | chr5_3:40458046-40458065 | None:intergenic | 45.0% | |
| AGTTACACTTTCAGGGACCA+AGG | + | chr5_3:40458515-40458534 | Msa0811330:intron | 45.0% | |
| !! | TAACAGCACTGGTCAAGACT+TGG | - | chr5_3:40459345-40459364 | None:intergenic | 45.0% |
| CCTTCACAAATTGGCAATGG+CGG | - | chr5_3:40459413-40459432 | None:intergenic | 45.0% | |
| TGCCAATTTGTGAAGGATGG+TGG | + | chr5_3:40459417-40459436 | Msa0811330:intron | 45.0% | |
| TAAGTGGCCATAAAACGGCA+TGG | - | chr5_3:40459445-40459464 | None:intergenic | 45.0% | |
| GCAGTGTTATCCATTTCGGA+TGG | - | chr5_3:40459493-40459512 | None:intergenic | 45.0% | |
| !! | ACATGCATGTTGGCTTCCTT+TGG | + | chr5_3:40459544-40459563 | Msa0811330:intron | 45.0% |
| !! | ATTTTGGGTCAAGAGGAGCT+AGG | + | chr5_3:40459703-40459722 | Msa0811330:intron | 45.0% |
| CTTTCACATGAGACCACCAT+GGG | - | chr5_3:40459870-40459889 | None:intergenic | 45.0% | |
| AAGCACAACTCCATTCCTTC+TGG | - | chr5_3:40460635-40460654 | None:intergenic | 45.0% | |
| CACTTAGGGTCACATCTTCA+AGG | + | chr5_3:40460684-40460703 | Msa0811330:CDS | 45.0% | |
| AGGGAAGAAACACAAGGCTA+AGG | + | chr5_3:40460704-40460723 | Msa0811330:CDS | 45.0% | |
| GTGGTCTGCTTCGTGATTAT+CGG | + | chr5_3:40460952-40460971 | Msa0811330:CDS | 45.0% | |
| TGGTCTGCTTCGTGATTATC+GGG | + | chr5_3:40460953-40460972 | Msa0811330:CDS | 45.0% | |
| TCCCCAAGGAGATACTTTCT+TGG | + | chr5_3:40461007-40461026 | Msa0811330:CDS | 45.0% | |
| !! | CCACCAAGAAAGTATCTCCT+TGG | - | chr5_3:40461013-40461032 | None:intergenic | 45.0% |
| CCAAGGAGATACTTTCTTGG+TGG | + | chr5_3:40461010-40461029 | Msa0811330:CDS | 45.0% | |
| TGGTGGAACTTTGGGCTATA+TGG | + | chr5_3:40461027-40461046 | Msa0811330:CDS | 45.0% | |
| GAACTTTGGGCTATATGGAG+AGG | + | chr5_3:40461032-40461051 | Msa0811330:CDS | 45.0% | |
| !! | AGAGGCCTTGTTCTCTCTTT+AGG | + | chr5_3:40461050-40461069 | Msa0811330:CDS | 45.0% |
| AGTCTCGGATTTCTCACTCA+TGG | + | chr5_3:40461204-40461223 | Msa0811330:CDS | 45.0% | |
| CTTGCAAAGATGGCTGTTTG+TGG | + | chr5_3:40461254-40461273 | Msa0811330:CDS | 45.0% | |
| GGCTGTTTGTGGAAATGATG+TGG | + | chr5_3:40461265-40461284 | Msa0811330:CDS | 45.0% | |
| AGTTACCATCTGAACGGAGT+TGG | + | chr5_3:40461377-40461396 | Msa0811330:three_prime_UTR | 45.0% | |
| !! | TAATTGTAAAAAAATAATTT+GGG | - | chr5_3:40453412-40453431 | None:intergenic | 5.0% |
| !! | TTAATTGTAAAAAAATAATT+TGG | - | chr5_3:40453413-40453432 | None:intergenic | 5.0% |
| !!! | TAATAATAAACTATTTTTTT+TGG | - | chr5_3:40453885-40453904 | None:intergenic | 5.0% |
| !! | GATTATATTATAAAATAAAA+AGG | - | chr5_3:40454196-40454215 | None:intergenic | 5.0% |
| !!! | TTTTTTTTCTTATAATAAAA+AGG | + | chr5_3:40457514-40457533 | Msa0811330:intron | 5.0% |
| !! | TACAAAATTAAAAAAAAAAA+TGG | + | chr5_3:40457827-40457846 | Msa0811330:intron | 5.0% |
| TATGCCACCGAGTGCTCATA+TGG | - | chr5_3:40454169-40454188 | None:intergenic | 50.0% | |
| TATGCCACCGAGTGCTCATA+TGG | - | chr5_3:40454169-40454188 | None:intergenic | 50.0% | |
| CGACCTTGAGGAATAACCTG+TGG | - | chr5_3:40454995-40455014 | None:intergenic | 50.0% | |
| GTTATCCTCTTGCTCCTCAG+AGG | - | chr5_3:40455121-40455140 | None:intergenic | 50.0% | |
| CCAACCAAGTATGAAGGTCG+AGG | - | chr5_3:40455489-40455508 | None:intergenic | 50.0% | |
| CCTCGACCTTCATACTTGGT+TGG | + | chr5_3:40455486-40455505 | Msa0811330:intron | 50.0% | |
| ! | ACCTTCATACTTGGTTGGCC+TGG | + | chr5_3:40455491-40455510 | Msa0811330:intron | 50.0% |
| TCCAGGCCAACCAAGTATGA+AGG | - | chr5_3:40455495-40455514 | None:intergenic | 50.0% | |
| !! | CTTGGTTGGCCTGGAATCTT+AGG | + | chr5_3:40455500-40455519 | Msa0811330:intron | 50.0% |
| TGAAGCTTAGACGCTCCTGA+AGG | + | chr5_3:40455830-40455849 | Msa0811330:intron | 50.0% | |
| !!! | CAGGAGCGCTTTTTCTCTTC+AGG | - | chr5_3:40455865-40455884 | None:intergenic | 50.0% |
| TTCAGGAGCAGCTTGACTTC+AGG | - | chr5_3:40455884-40455903 | None:intergenic | 50.0% | |
| !! | TCAGGAGCGCTTTAGTCTTC+AGG | - | chr5_3:40455921-40455940 | None:intergenic | 50.0% |
| ! | GAAGACTAAAGCGCTCCTGA+CGG | + | chr5_3:40455921-40455940 | Msa0811330:intron | 50.0% |
| !! | TTCAGGAGCACTATTCCGTC+AGG | - | chr5_3:40455939-40455958 | None:intergenic | 50.0% |
| ! | TGAGGCAGCTTCTGATAACG+TGG | - | chr5_3:40455997-40456016 | None:intergenic | 50.0% |
| CGCCTGCAAAGATGTTCCTT+TGG | + | chr5_3:40456290-40456309 | Msa0811330:intron | 50.0% | |
| TCTTGCAGTTGTGCTTGAGC+AGG | + | chr5_3:40456692-40456711 | Msa0811330:intron | 50.0% | |
| CTTGCAGTTGTGCTTGAGCA+GGG | + | chr5_3:40456693-40456712 | Msa0811330:intron | 50.0% | |
| GAGCAAAGGAAGTCTCTTGC+AGG | + | chr5_3:40456768-40456787 | Msa0811330:CDS | 50.0% | |
| ! | ATCTCCTTGGAAGTGCAAGG+GGG | + | chr5_3:40456832-40456851 | Msa0811330:intron | 50.0% |
| ACTGGACTACTTCCGGATTG+TGG | + | chr5_3:40456855-40456874 | Msa0811330:intron | 50.0% | |
| GGGTCGCATGATTAGGTCAA+TGG | + | chr5_3:40457070-40457089 | Msa0811330:intron | 50.0% | |
| ACCCAATGAAAGCCGAAGGA+AGG | + | chr5_3:40457669-40457688 | Msa0811330:intron | 50.0% | |
| !! | ATAGACAGCGCCGACCAAAA+TGG | - | chr5_3:40458369-40458388 | None:intergenic | 50.0% |
| ACTTTCAGGGACCAAGGTGT+TGG | + | chr5_3:40458521-40458540 | Msa0811330:intron | 50.0% | |
| GGAGATGTAGTGTCGTGTTG+TGG | + | chr5_3:40459091-40459110 | Msa0811330:intron | 50.0% | |
| AGTGTCGTGTTGTGGTCTCT+TGG | + | chr5_3:40459099-40459118 | Msa0811330:intron | 50.0% | |
| !! | TTGGTCACCATGGTGGATTG+CGG | + | chr5_3:40459369-40459388 | Msa0811330:intron | 50.0% |
| CCGCCATTGCCAATTTGTGA+AGG | + | chr5_3:40459410-40459429 | Msa0811330:intron | 50.0% | |
| CGCCACCATCCTTCACAAAT+TGG | - | chr5_3:40459422-40459441 | None:intergenic | 50.0% | |
| TTCGTTATTGCAGGCTCCCA+TGG | + | chr5_3:40459851-40459870 | Msa0811330:intron | 50.0% | |
| GCTTTCACATGAGACCACCA+TGG | - | chr5_3:40459871-40459890 | None:intergenic | 50.0% | |
| GTACTGGGAACATGTGTGCA+TGG | + | chr5_3:40459968-40459987 | Msa0811330:CDS | 50.0% | |
| GCATCTCTCACCAAGTCTTG+TGG | - | chr5_3:40460489-40460508 | None:intergenic | 50.0% | |
| CATCAGGGGAGAGATGATCT+TGG | + | chr5_3:40460558-40460577 | Msa0811330:intron | 50.0% | |
| GGAAAAAGCCGGAATTCGGA+TGG | + | chr5_3:40460880-40460899 | Msa0811330:CDS | 50.0% | |
| GGTCTGCTTCGTGATTATCG+GGG | + | chr5_3:40460954-40460973 | Msa0811330:CDS | 50.0% | |
| TTTGTCTCGAAAGCTCCCCA+AGG | + | chr5_3:40460993-40461012 | Msa0811330:CDS | 50.0% | |
| TACCATCTGAACGGAGTTGG+TGG | + | chr5_3:40461380-40461399 | Msa0811330:three_prime_UTR | 50.0% | |
| GAATGAAGATCCGCTCCGTG+AGG | + | chr5_3:40453202-40453221 | Msa0811330:CDS | 55.0% | |
| ! | CTATCCCTCTGAGGAGCAAG+AGG | + | chr5_3:40455113-40455132 | Msa0811330:CDS | 55.0% |
| TTGCAGGCGAAGCCGTATTC+TGG | - | chr5_3:40456279-40456298 | None:intergenic | 55.0% | |
| AAGGGGGACTGGACTACTTC+CGG | + | chr5_3:40456848-40456867 | Msa0811330:intron | 55.0% | |
| GGACTACTTCCGGATTGTGG+AGG | + | chr5_3:40456858-40456877 | Msa0811330:intron | 55.0% | |
| GTTATTGCAGGCTCCCATGG+TGG | + | chr5_3:40459854-40459873 | Msa0811330:intron | 55.0% | |
| GTGGTCTCATGTGAAAGCCG+TGG | + | chr5_3:40459873-40459892 | Msa0811330:CDS | 55.0% | |
| GGAACATGTGTGCATGGACG+AGG | + | chr5_3:40459974-40459993 | Msa0811330:CDS | 55.0% | |
| CTCCACCAACTCCGTTCAGA+TGG | - | chr5_3:40461385-40461404 | None:intergenic | 55.0% | |
| CGTGTCTAGCGCCATGTCCA+AGG | + | chr5_3:40454878-40454897 | Msa0811330:intron | 60.0% | |
| CACGGGGAACCTCCTCCTAA+AGG | + | chr5_3:40455606-40455625 | Msa0811330:intron | 60.0% | |
| CAGTCCCCCTTGCACTTCCA+AGG | - | chr5_3:40456839-40456858 | None:intergenic | 60.0% | |
| ! | CTTGGAAGTGCAAGGGGGAC+TGG | + | chr5_3:40456837-40456856 | Msa0811330:intron | 60.0% |
| !! | GTCACCATGGTGGATTGCGG+TGG | + | chr5_3:40459372-40459391 | Msa0811330:intron | 60.0% |
| ACTGCCACCGCAATCCACCA+TGG | - | chr5_3:40459379-40459398 | None:intergenic | 60.0% | |
| !!! | GGTGGCGCCATGCCGTTTTA+TGG | + | chr5_3:40459435-40459454 | Msa0811330:intron | 60.0% |
| AGCACACGCACCTCACGGAG+CGG | - | chr5_3:40453215-40453234 | None:intergenic | 65.0% | |
| CTCCGTGAGGTGCGTGTGCT+CGG | + | chr5_3:40453215-40453234 | Msa0811330:intron | 65.0% | |
| CACCGAGCACACGCACCTCA+CGG | - | chr5_3:40453220-40453239 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 40453152 | 40461589 | 40453152 | ID=Msa0811330;Name=Msa0811330 |
| chr5_3 | mRNA | 40453152 | 40461589 | 40453152 | ID=Msa0811330-mRNA-1;Parent=Msa0811330;Name=Msa0811330-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.37|0.44|0.44|1|1|9|219|619 |
| chr5_3 | exon | 40453152 | 40453223 | 40453152 | ID=Msa0811330-mRNA-1:exon:12403;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40454887 | 40454997 | 40454887 | ID=Msa0811330-mRNA-1:exon:12404;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40455105 | 40455171 | 40455105 | ID=Msa0811330-mRNA-1:exon:12405;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40455949 | 40456160 | 40455949 | ID=Msa0811330-mRNA-1:exon:12406;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40456714 | 40456805 | 40456714 | ID=Msa0811330-mRNA-1:exon:12407;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40458042 | 40458068 | 40458042 | ID=Msa0811330-mRNA-1:exon:12408;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40458161 | 40458283 | 40458161 | ID=Msa0811330-mRNA-1:exon:12409;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40459864 | 40460212 | 40459864 | ID=Msa0811330-mRNA-1:exon:12410;Parent=Msa0811330-mRNA-1 |
| chr5_3 | exon | 40460564 | 40461589 | 40460564 | ID=Msa0811330-mRNA-1:exon:12411;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40453152 | 40453223 | 40453152 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40454887 | 40454997 | 40454887 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40455105 | 40455171 | 40455105 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40455949 | 40456160 | 40455949 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40456714 | 40456805 | 40456714 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40458042 | 40458068 | 40458042 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40458161 | 40458283 | 40458161 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40459864 | 40460212 | 40459864 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | CDS | 40460564 | 40461370 | 40460564 | ID=Msa0811330-mRNA-1:cds;Parent=Msa0811330-mRNA-1 |
| chr5_3 | three_prime_UTR | 40461371 | 40461589 | 40461371 | ID=Msa0811330-mRNA-1:three_prime_utr;Parent=Msa0811330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
