AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0886330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886330 MtrunA17_Chr6g0467101 98.462 195 3 0 1 195 1 195 3.70e-145 401
Msa0886330 MtrunA17_Chr1g0201541 63.810 210 58 3 1 195 1 207 8.15e-89 259
Msa0886330 MtrunA17_Chr8g0383401 51.659 211 79 6 1 195 1 204 1.93e-61 190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886330 AT4G09830.1 63.131 198 63 3 1 195 1 191 2.34e-73 220
Msa0886330 AT5G64780.1 48.066 181 81 3 1 178 1 171 1.16e-46 151

Find 82 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGGATTTGCTTGCTCTT+TGG 0.200161 6_1:+44697381 Msa0886330:three_prime_UTR
AATCTTCAGCTTTATCAAAT+TGG 0.213955 6_1:+44697166 Msa0886330:CDS
CCAGTCACTTCAGGAACTTC+TGG 0.246666 6_1:+44697040 Msa0886330:CDS
ATCCATGGCAGAATCATTAT+TGG 0.297537 6_1:-44697248 None:intergenic
TCAGGCTTTCCAGTCACTTC+AGG 0.305417 6_1:+44697031 Msa0886330:CDS
CTAGTCCTATTCTTGTCTAT+TGG 0.309010 6_1:+44697282 Msa0886330:exon
TTTGAAAACACCGAGTTCTT+TGG 0.310535 6_1:-44697118 None:intergenic
CGTTTCTTCGCCATTGGAAT+CGG 0.347027 6_1:-44691120 None:intergenic
AGCTGAAGATTTCGACGAAC+AGG 0.349902 6_1:-44697154 None:intergenic
GCCCGGCCCCAGCTATTGTT+TGG 0.350708 6_1:-44697063 None:intergenic
AACCATCACAATTCCTTGTC+TGG 0.363764 6_1:+44697364 Msa0886330:three_prime_UTR
ATGATACCTGTCACCAGTTC+AGG 0.376135 6_1:+44697013 Msa0886330:CDS
TGATGTAGTTAACTACATTC+AGG 0.382450 6_1:+44694557 Msa0886330:CDS
GACTTACGTTTCTTCGCCAT+TGG 0.395315 6_1:-44691126 None:intergenic
AGAAAGCTTCTGATGATTCA+TGG 0.396363 6_1:-44691238 None:intergenic
GTATCATTGGCTGTGGCTGC+TGG 0.397241 6_1:-44696997 None:intergenic
AATGAGGGTTGTTGTTGATT+CGG 0.397849 6_1:-44691074 None:intergenic
TTGTATTCTAAATTTCTTCA+AGG 0.419257 6_1:+44697663 Msa0886330:three_prime_UTR
CAAGGAATTGTGATGGTTGT+TGG 0.420570 6_1:-44697359 None:intergenic
ACTTCTGGCCAAACAATAGC+TGG 0.421636 6_1:+44697055 Msa0886330:CDS
ACAAACCAATAGACAAGAAT+AGG 0.435250 6_1:-44697287 None:intergenic
GTAAAGCTGAGAAAGAGAAT+TGG 0.450087 6_1:-44691208 None:intergenic
CAGAATGAGTTAGATTATTG+TGG 0.452182 6_1:+44696935 Msa0886330:intron
GGCCAAACAATAGCTGGGGC+CGG 0.453630 6_1:+44697061 Msa0886330:CDS
TGTATTCTAAATTTCTTCAA+GGG 0.468630 6_1:+44697664 Msa0886330:three_prime_UTR
CGGTGGTGGATGGAGGAATG+AGG 0.471918 6_1:-44691090 None:intergenic
GCCAAACAATAGCTGGGGCC+GGG 0.486665 6_1:+44697062 Msa0886330:CDS
AGAATTGGCAGCGGTGGAGA+AGG 0.489074 6_1:-44691193 None:intergenic
CGGTGGCGCTCTGGGTGACA+TGG 0.493009 6_1:-44696969 None:intergenic
CGGCGGAGATCGGTGGTGGA+TGG 0.497980 6_1:-44691100 None:intergenic
CCATTGGAATCGGCGGAGAT+CGG 0.499729 6_1:-44691110 None:intergenic
AGTGACTGGAAAGCCTGAAC+TGG 0.501227 6_1:-44697026 None:intergenic
ACAATAGCTGGGGCCGGGCA+AGG 0.510273 6_1:+44697067 Msa0886330:CDS
CGGAGATCGGTGGTGGATGG+AGG 0.516588 6_1:-44691097 None:intergenic
GCTTACGTCGACCAAGCGAT+TGG 0.516697 6_1:+44697458 Msa0886330:three_prime_UTR
GAATCGGCGGAGATCGGTGG+TGG 0.522126 6_1:-44691104 None:intergenic
GAACTGGTGACAGGTATCAT+TGG 0.522361 6_1:-44697010 None:intergenic
AAGACTCCAAACCAATCGCT+TGG 0.531726 6_1:-44697469 None:intergenic
CCAGAAGTTCCTGAAGTGAC+TGG 0.532351 6_1:-44697040 None:intergenic
GGTGGTGGATGGAGGAATGA+GGG 0.535280 6_1:-44691089 None:intergenic
CAGCTTTATCAAATTGGTGA+GGG 0.538099 6_1:+44697172 Msa0886330:CDS
CCGATCTCCGCCGATTCCAA+TGG 0.539060 6_1:+44691110 Msa0886330:exon
GTCCACAGATTCTATCCGTA+TGG 0.539353 6_1:+44697588 Msa0886330:three_prime_UTR
AACAAGAAGAAGGAGGGTCG+AGG 0.541006 6_1:+44694523 Msa0886330:CDS
ATCGGAGCGTAGTCCTTGCC+CGG 0.541129 6_1:-44697080 None:intergenic
AAGCAACCCCTGAAATCTAA+AGG 0.541219 6_1:-44697533 None:intergenic
CTTCTGGCCAAACAATAGCT+GGG 0.543316 6_1:+44697056 Msa0886330:CDS
CTTTATCAAATTGGTGAGGG+TGG 0.546767 6_1:+44697175 Msa0886330:CDS
GGGGAGATTATGGAAAGAGA+GGG 0.550825 6_1:-44691043 None:intergenic
AATCTATGTATTAACGAAGA+CGG 0.556365 6_1:+44697773 Msa0886330:three_prime_UTR
GGAAAGCCTGAACTGGTGAC+AGG 0.556654 6_1:-44697019 None:intergenic
GGTGGAGAAGGAAGCATACA+TGG 0.562243 6_1:-44691181 None:intergenic
AGAAAGAGAATTGGCAGCGG+TGG 0.563978 6_1:-44691199 None:intergenic
TTCCAATAATGATTCTGCCA+TGG 0.570860 6_1:+44697246 Msa0886330:CDS
ATCGTGCAAGAAATGATAAG+AGG 0.572706 6_1:+44697404 Msa0886330:three_prime_UTR
GTATTCTAAATTTCTTCAAG+GGG 0.572902 6_1:+44697665 Msa0886330:three_prime_UTR
TGGACAAATACAGATTTACA+AGG 0.573959 6_1:-44697570 None:intergenic
CGCCATACGGATAGAATCTG+TGG 0.575105 6_1:-44697590 None:intergenic
GCTGAAGATTTCGACGAACA+GGG 0.582791 6_1:-44697153 None:intergenic
CTAGTCTGCATGCATATCCA+TGG 0.585175 6_1:-44697263 None:intergenic
TCAGCTTTATCAAATTGGTG+AGG 0.587468 6_1:+44697171 Msa0886330:CDS
CAAGTCTCGACGAAGTCGAT+CGG 0.588474 6_1:+44691157 Msa0886330:CDS
GTGACAGGTATCATTGGCTG+TGG 0.588517 6_1:-44697004 None:intergenic
TGAAAATCAGCCAAAGAACT+CGG 0.589877 6_1:+44697108 Msa0886330:CDS
TTGGAATCGGCGGAGATCGG+TGG 0.591812 6_1:-44691107 None:intergenic
TTCTTCGCCATTGGAATCGG+CGG 0.597410 6_1:-44691117 None:intergenic
TGGATTTGGAAACAAGAAGA+AGG 0.601954 6_1:+44694513 Msa0886330:CDS
TTTGAACCTTTAGATTTCAG+GGG 0.621957 6_1:+44697527 Msa0886330:three_prime_UTR
ATCCAGACAAGGAATTGTGA+TGG 0.628373 6_1:-44697366 None:intergenic
TCGTGCAAGAAATGATAAGA+GGG 0.629564 6_1:+44697405 Msa0886330:three_prime_UTR
AACAACTGTAAATCGCCATA+CGG 0.630462 6_1:-44697603 None:intergenic
ACAAGAAGAAGGAGGGTCGA+GGG 0.630981 6_1:+44694524 Msa0886330:CDS
TATTCTAAATTTCTTCAAGG+GGG 0.633432 6_1:+44697666 Msa0886330:three_prime_UTR
TTCTGGCCAAACAATAGCTG+GGG 0.648372 6_1:+44697057 Msa0886330:CDS
TGCAAGAAATGATAAGAGGG+TGG 0.659280 6_1:+44697408 Msa0886330:three_prime_UTR
TTTGGAAACAAGAAGAAGGA+GGG 0.660375 6_1:+44694517 Msa0886330:CDS
ATTTGGAAACAAGAAGAAGG+AGG 0.667699 6_1:+44694516 Msa0886330:CDS
GACTTCGTCGAGACTTGACG+CGG 0.668540 6_1:-44691151 None:intergenic
CGATTTACAGTTGTTGACGC+CGG 0.668661 6_1:+44697611 Msa0886330:three_prime_UTR
CTGAGAAAGAGAATTGGCAG+CGG 0.679213 6_1:-44691202 None:intergenic
AGAGCAAGCAAATCCAGACA+AGG 0.684257 6_1:-44697377 None:intergenic
GGACAAATACAGATTTACAA+GGG 0.703342 6_1:-44697569 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAATAATTAAAA+AGG - chr6_1:44691322-44691341 None:intergenic 0.0%
!! TATATATATATATATATATA+AGG - chr6_1:44696449-44696468 None:intergenic 0.0%
!! CTTAAAAAAAAAAAAAACAA+GGG - chr6_1:44693549-44693568 None:intergenic 10.0%
!! ACTTAAAAAAAAAAAAAACA+AGG - chr6_1:44693550-44693569 None:intergenic 10.0%
!!! TTTTTTTTTTAAGTTTGAAT+TGG + chr6_1:44693556-44693575 Msa0886330:intron 10.0%
!!! AAATGTTGTTTTTGTTTTTA+AGG + chr6_1:44691411-44691430 Msa0886330:intron 15.0%
!!! TGTTGTTTTTAAGTTTAATT+TGG + chr6_1:44691636-44691655 Msa0886330:intron 15.0%
!! ATAAAATCAAATACAACTAA+GGG - chr6_1:44691790-44691809 None:intergenic 15.0%
!!! TTTGTTTTTAACTTTGATTT+TGG + chr6_1:44691851-44691870 Msa0886330:intron 15.0%
!!! TCTGTTACAATTTATTTTTT+CGG + chr6_1:44693147-44693166 Msa0886330:intron 15.0%
!!! GTTTTTAAGTTTGATTTTTT+TGG + chr6_1:44693242-44693261 Msa0886330:intron 15.0%
!!! GTTTTTTTGTGATTTTTATT+TGG + chr6_1:44693500-44693519 Msa0886330:intron 15.0%
!! TAAAATGTTATGTTTATTGT+TGG + chr6_1:44693760-44693779 Msa0886330:intron 15.0%
!! AAAATGTTATGTTTATTGTT+GGG + chr6_1:44693761-44693780 Msa0886330:intron 15.0%
!! NNNNNNNAATGCTTTAATCT+AGG + chr6_1:44694375-44694394 Msa0886330:intron 15.0%
!! AAAATGCAAATACAAAATTA+GGG - chr6_1:44695653-44695672 None:intergenic 15.0%
!! TAAAATGCAAATACAAAATT+AGG - chr6_1:44695654-44695673 None:intergenic 15.0%
!!! TATTTGCATTTTAAAATTGA+TGG + chr6_1:44695661-44695680 Msa0886330:intron 15.0%
!! TCTTAGAAAATAACTATTAA+GGG + chr6_1:44696402-44696421 Msa0886330:intron 15.0%
!! TATTCATAATCATAACAATA+AGG - chr6_1:44696562-44696581 None:intergenic 15.0%
!! CATATTTATAAGAGATATTT+GGG - chr6_1:44696720-44696739 None:intergenic 15.0%
!! TCATATTTATAAGAGATATT+TGG - chr6_1:44696721-44696740 None:intergenic 15.0%
!!! TTTTATACATGTATTTACTT+AGG - chr6_1:44696898-44696917 None:intergenic 15.0%
!!! TAAGTTTAATTTGGTGTTTA+TGG + chr6_1:44691645-44691664 Msa0886330:intron 20.0%
!! TAAAATCAAATACAACTAAG+GGG - chr6_1:44691789-44691808 None:intergenic 20.0%
!! CATAAAATCAAATACAACTA+AGG - chr6_1:44691791-44691810 None:intergenic 20.0%
!!! AAGTTTGATTTTGATGTTTA+TGG + chr6_1:44691959-44691978 Msa0886330:intron 20.0%
!!! AAACACACAACATTTTATTA+GGG - chr6_1:44691999-44692018 None:intergenic 20.0%
!!! TTGGTAATATTGAAATTGTT+AGG + chr6_1:44692035-44692054 Msa0886330:intron 20.0%
!!! TTTATTGTGATTTTTTGTTC+AGG + chr6_1:44692232-44692251 Msa0886330:intron 20.0%
!! TCACAGATATAATAAAATAG+TGG - chr6_1:44692511-44692530 None:intergenic 20.0%
!! AAAGTTAAAACAAGTAACAT+GGG - chr6_1:44692544-44692563 None:intergenic 20.0%
!! TAAAGTTAAAACAAGTAACA+TGG - chr6_1:44692545-44692564 None:intergenic 20.0%
!! TAACTTTACTTTAGTGTTTA+TGG + chr6_1:44692557-44692576 Msa0886330:intron 20.0%
!! TATAACCATAAAATCAACAA+GGG - chr6_1:44692849-44692868 None:intergenic 20.0%
!! TTATAACCATAAAATCAACA+AGG - chr6_1:44692850-44692869 None:intergenic 20.0%
!!! TTTTATGGTTATAATGTTGT+TGG + chr6_1:44692856-44692875 Msa0886330:intron 20.0%
!! TGCTAAATATCAAAATTGTT+AGG + chr6_1:44692918-44692937 Msa0886330:intron 20.0%
!!! AATATTTTATGTGGATACTT+GGG + chr6_1:44692944-44692963 Msa0886330:intron 20.0%
!! CTTAAAACTCATAAATACAA+AGG - chr6_1:44692988-44693007 None:intergenic 20.0%
!!! CTTTGTATTTATGAGTTTTA+AGG + chr6_1:44692986-44693005 Msa0886330:intron 20.0%
!!! TGTTCTTTTTTTTTTACTTC+AGG + chr6_1:44693198-44693217 Msa0886330:intron 20.0%
!!! TCATTTTTTGTGATTCTTAT+TGG + chr6_1:44693826-44693845 Msa0886330:intron 20.0%
!! TAAAAAATGTTGTCAGATAT+CGG + chr6_1:44694033-44694052 Msa0886330:intron 20.0%
!!! GTATTGATAATTTATTAACG+TGG + chr6_1:44694456-44694475 Msa0886330:intron 20.0%
!!! CTTATGTTTGTAAATTTGTT+GGG + chr6_1:44694904-44694923 Msa0886330:intron 20.0%
!!! ATGTTGAAAGGTTTTTATAT+TGG + chr6_1:44695083-44695102 Msa0886330:intron 20.0%
!!! TGTTGAAAGGTTTTTATATT+GGG + chr6_1:44695084-44695103 Msa0886330:intron 20.0%
!!! TTTTGCAAACATGATTATTT+TGG + chr6_1:44695244-44695263 Msa0886330:intron 20.0%
!!! GTAAAATAGTAGATTTTCAT+CGG - chr6_1:44695623-44695642 None:intergenic 20.0%
!!! TTTAAAATTGATGGTATGAA+TGG + chr6_1:44695670-44695689 Msa0886330:intron 20.0%
!!! TAATAGTTATTTTCTAAGAG+AGG - chr6_1:44696401-44696420 None:intergenic 20.0%
!! CTCTTAGAAAATAACTATTA+AGG + chr6_1:44696401-44696420 Msa0886330:intron 20.0%
!! CTTAGAAAATAACTATTAAG+GGG + chr6_1:44696403-44696422 Msa0886330:intron 20.0%
!! TTAGAAAATAACTATTAAGG+GGG + chr6_1:44696404-44696423 Msa0886330:intron 20.0%
!! TATATAACTATATCTACAGA+TGG - chr6_1:44696606-44696625 None:intergenic 20.0%
!! ATATCTCTTATAAATATGAC+CGG + chr6_1:44696722-44696741 Msa0886330:intron 20.0%
!! ATTTATATTAATACTTCCTC+CGG - chr6_1:44696744-44696763 None:intergenic 20.0%
!! AATAATCATATCAAGTATCT+AGG + chr6_1:44696761-44696780 Msa0886330:intron 20.0%
!!! AGATGCTTAATATATGATTT+TGG + chr6_1:44696870-44696889 Msa0886330:intron 20.0%
!! AGGTCAGATAAAAAATTTAA+TGG - chr6_1:44697313-44697332 None:intergenic 20.0%
!! TTGTATTCTAAATTTCTTCA+AGG + chr6_1:44697663-44697682 Msa0886330:three_prime_UTR 20.0%
!! TGTATTCTAAATTTCTTCAA+GGG + chr6_1:44697664-44697683 Msa0886330:three_prime_UTR 20.0%
!!! CTTGAACTTTTTAACATTAA+GGG + chr6_1:44697703-44697722 Msa0886330:three_prime_UTR 20.0%
!! TTTAAGGTTGTAATGTTGTT+TGG + chr6_1:44691427-44691446 Msa0886330:intron 25.0%
! ATTAGTGTAATTATATGCGT+CGG - chr6_1:44691550-44691569 None:intergenic 25.0%
! CTGACAATATCAAAATTGTT+AGG + chr6_1:44691722-44691741 Msa0886330:intron 25.0%
! AAAATCAAATACAACTAAGG+GGG - chr6_1:44691788-44691807 None:intergenic 25.0%
!!! AGTTGTATTTGATTTTATGC+AGG + chr6_1:44691792-44691811 Msa0886330:intron 25.0%
!! CAAACACACAACATTTTATT+AGG - chr6_1:44692000-44692019 None:intergenic 25.0%
! ATAGTATTTCACAATGTTGA+TGG - chr6_1:44692360-44692379 None:intergenic 25.0%
!!! ATTTTCCCTTGTTGATTTTA+TGG + chr6_1:44692841-44692860 Msa0886330:intron 25.0%
!! GAATATTTTATGTGGATACT+TGG + chr6_1:44692943-44692962 Msa0886330:intron 25.0%
!!! TGTATTTATGAGTTTTAAGG+TGG + chr6_1:44692989-44693008 Msa0886330:intron 25.0%
!!! GTTACAATTTATTTTTTCGG+TGG + chr6_1:44693150-44693169 Msa0886330:intron 25.0%
!!! TTTTTTGGTTGTAATGTTGT+TGG + chr6_1:44693257-44693276 Msa0886330:intron 25.0%
! ACAACAAACAAAAACAATGT+GGG - chr6_1:44693694-44693713 None:intergenic 25.0%
! AACAACAAACAAAAACAATG+TGG - chr6_1:44693695-44693714 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+TGG + chr6_1:44693943-44693962 Msa0886330:intron 25.0%
! GTTAAAATTCAACTATGCAA+TGG - chr6_1:44694078-44694097 None:intergenic 25.0%
!! AAAAACTTTATCAGTGGATT+TGG + chr6_1:44694499-44694518 Msa0886330:CDS 25.0%
! TCATTTATTTATGCATGCTT+CGG + chr6_1:44694607-44694626 Msa0886330:intron 25.0%
! TATTCCAAATGTATCGTATA+TGG + chr6_1:44694787-44694806 Msa0886330:intron 25.0%
! GCTTATGTTTGTAAATTTGT+TGG + chr6_1:44694903-44694922 Msa0886330:intron 25.0%
!!! GTAAATTTGTTGGGAATATT+TGG + chr6_1:44694913-44694932 Msa0886330:intron 25.0%
! AAAATACTACACAGAATAAC+AGG - chr6_1:44695058-44695077 None:intergenic 25.0%
!!! GTATTTTGATTGATGTTGAA+AGG + chr6_1:44695071-44695090 Msa0886330:intron 25.0%
! CCTTATTAAAAAGGAAACAT+TGG - chr6_1:44695190-44695209 None:intergenic 25.0%
!! CCAATGTTTCCTTTTTAATA+AGG + chr6_1:44695187-44695206 Msa0886330:intron 25.0%
!! ATGTTTCCTTTTTAATAAGG+TGG + chr6_1:44695190-44695209 Msa0886330:intron 25.0%
!!! TTTAAAATCCTAGTGTTTTC+AGG - chr6_1:44695381-44695400 None:intergenic 25.0%
!!! TTCAAATTCTTTTTCAGAGT+TGG + chr6_1:44695577-44695596 Msa0886330:intron 25.0%
! TTAGATCTTCTCAAAGTAAA+TGG - chr6_1:44695807-44695826 None:intergenic 25.0%
! TTAGATCTTCTCAAAGTAAA+TGG - chr6_1:44695807-44695826 None:intergenic 25.0%
! AAGATCTAAAAAATGAGACA+TGG + chr6_1:44695897-44695916 Msa0886330:intron 25.0%
!!! GTAGAAGACTTGTTTTAAAT+AGG + chr6_1:44696041-44696060 Msa0886330:intron 25.0%
!!! CTTTACTAGTTTTTAATGGA+GGG - chr6_1:44696149-44696168 None:intergenic 25.0%
!!! TCTCCTTTACTAGTTTTTAA+TGG - chr6_1:44696153-44696172 None:intergenic 25.0%
! TATCAAATGTAATCAAATCC+TGG - chr6_1:44696366-44696385 None:intergenic 25.0%
! GATTACATTTGATAAACTTG+AGG + chr6_1:44696372-44696391 Msa0886330:intron 25.0%
! TGCATTGTTAAACAAATAAG+AGG + chr6_1:44696813-44696832 Msa0886330:intron 25.0%
! GCATTGTTAAACAAATAAGA+GGG + chr6_1:44696814-44696833 Msa0886330:intron 25.0%
!! AATCTTCAGCTTTATCAAAT+TGG + chr6_1:44697166-44697185 Msa0886330:CDS 25.0%
!! GCTAATTCTTGTTACATTTT+TGG + chr6_1:44697432-44697451 Msa0886330:three_prime_UTR 25.0%
!! ATTTTGAACCTTTAGATTTC+AGG + chr6_1:44697525-44697544 Msa0886330:three_prime_UTR 25.0%
!! TTTTGAACCTTTAGATTTCA+GGG + chr6_1:44697526-44697545 Msa0886330:three_prime_UTR 25.0%
! AAAAAAACAAAGAGCAAAAC+CGG - chr6_1:44697633-44697652 None:intergenic 25.0%
! GTATTCTAAATTTCTTCAAG+GGG + chr6_1:44697665-44697684 Msa0886330:three_prime_UTR 25.0%
! TATTCTAAATTTCTTCAAGG+GGG + chr6_1:44697666-44697685 Msa0886330:three_prime_UTR 25.0%
!! GCTTGAACTTTTTAACATTA+AGG + chr6_1:44697702-44697721 Msa0886330:three_prime_UTR 25.0%
! AATCTATGTATTAACGAAGA+CGG + chr6_1:44697773-44697792 Msa0886330:three_prime_UTR 25.0%
GTTTATGGTTGTAATGTTGT+TGG + chr6_1:44691660-44691679 Msa0886330:intron 30.0%
!!! TTAGGTTAAACGTTTTTTCG+TGG + chr6_1:44691740-44691759 Msa0886330:intron 30.0%
TCAATATTACCAATTGAGCT+TGG - chr6_1:44692028-44692047 None:intergenic 30.0%
GATTAAGCATGTTCGAATTT+CGG + chr6_1:44692073-44692092 Msa0886330:intron 30.0%
ATTAAGCATGTTCGAATTTC+GGG + chr6_1:44692074-44692093 Msa0886330:intron 30.0%
TTGTTAAATAGCAGCTATAG+CGG + chr6_1:44692259-44692278 Msa0886330:intron 30.0%
TACAGAATATTGTCAGATAG+CGG + chr6_1:44692440-44692459 Msa0886330:intron 30.0%
GTTTATGGTTGTAATGTTGT+TGG + chr6_1:44691660-44691679 Msa0886330:intron 30.0%
CTAGTATTCAAAGTTAAGCT+AGG - chr6_1:44692627-44692646 None:intergenic 30.0%
AGTAATCCCAAATTTGAACT+CGG - chr6_1:44692681-44692700 None:intergenic 30.0%
AAAACTCTTCTCAACAACAT+GGG - chr6_1:44692774-44692793 None:intergenic 30.0%
AAAAACTCTTCTCAACAACA+TGG - chr6_1:44692775-44692794 None:intergenic 30.0%
! ATGTTGTTGAGAAGAGTTTT+TGG + chr6_1:44692774-44692793 Msa0886330:intron 30.0%
! GTTAGGCTGAATATTTTATG+TGG + chr6_1:44692935-44692954 Msa0886330:intron 30.0%
CAACACAATGTTTGATTAAG+TGG - chr6_1:44693021-44693040 None:intergenic 30.0%
GCAATACTGAAATTGTTAGA+CGG + chr6_1:44693321-44693340 Msa0886330:intron 30.0%
CAATACTGAAATTGTTAGAC+GGG + chr6_1:44693322-44693341 Msa0886330:intron 30.0%
AATACTGAAATTGTTAGACG+GGG + chr6_1:44693323-44693342 Msa0886330:intron 30.0%
CAAACCAATGCTTAATTAAG+TGG - chr6_1:44693423-44693442 None:intergenic 30.0%
GTTCACCATTGTAATGTTAT+CGG + chr6_1:44693580-44693599 Msa0886330:intron 30.0%
TCTTACCGATAACATTACAA+TGG - chr6_1:44693588-44693607 None:intergenic 30.0%
AATGTCTACCCTATCAATTT+CGG - chr6_1:44693630-44693649 None:intergenic 30.0%
AACAAAAACAATGTGGGAAA+AGG - chr6_1:44693688-44693707 None:intergenic 30.0%
! TTCTGTTATAAAGTACCTAC+CGG + chr6_1:44693868-44693887 Msa0886330:intron 30.0%
TTGTACTGAATAGTGTATTG+AGG - chr6_1:44692317-44692336 None:intergenic 30.0%
CAAAATCAGCTATGAAATAG+TGG - chr6_1:44693978-44693997 None:intergenic 30.0%
AAAATTCAACTATGCAATGG+TGG - chr6_1:44694075-44694094 None:intergenic 30.0%
! TATCTGCAATTGATGACATT+AGG + chr6_1:44694115-44694134 Msa0886330:intron 30.0%
! TGACATTAGGATTGATTCTT+TGG + chr6_1:44694128-44694147 Msa0886330:intron 30.0%
! ATTAGGATTGATTCTTTGGA+TGG + chr6_1:44694132-44694151 Msa0886330:intron 30.0%
!! TAGACAAGAACAATTTGTTG+AGG + chr6_1:44694231-44694250 Msa0886330:intron 30.0%
TGGAATGTTCTAATGATATC+AGG + chr6_1:44694476-44694495 Msa0886330:intron 30.0%
ATCAGGAAAAACTTTATCAG+TGG + chr6_1:44694493-44694512 Msa0886330:intron 30.0%
TGATGTAGTTAACTACATTC+AGG + chr6_1:44694557-44694576 Msa0886330:CDS 30.0%
ATGTCCATATACGATACATT+TGG - chr6_1:44694794-44694813 None:intergenic 30.0%
CAAACTATGCATTAGTGTAA+CGG + chr6_1:44694842-44694861 Msa0886330:intron 30.0%
ATAGTCTATTACCATATGGA+AGG - chr6_1:44694969-44694988 None:intergenic 30.0%
GTCAATAGTCTATTACCATA+TGG - chr6_1:44694973-44694992 None:intergenic 30.0%
! GAAAGGTTTTTATATTGGGA+AGG + chr6_1:44695088-44695107 Msa0886330:intron 30.0%
TAGATGCCACCTTATTAAAA+AGG - chr6_1:44695199-44695218 None:intergenic 30.0%
AAGTTGTTATCCTTTCTTGT+GGG + chr6_1:44695267-44695286 Msa0886330:intron 30.0%
AAGTTGAAGATATAGAACAG+AGG - chr6_1:44695435-44695454 None:intergenic 30.0%
!!! AAATTCTTTTTCAGAGTTGG+CGG + chr6_1:44695580-44695599 Msa0886330:intron 30.0%
TGATGGTATGAATGGAAAAA+TGG + chr6_1:44695678-44695697 Msa0886330:intron 30.0%
TAAAAAATGAGACATGGTTG+TGG + chr6_1:44695903-44695922 Msa0886330:intron 30.0%
AAAAAATGAGACATGGTTGT+GGG + chr6_1:44695904-44695923 Msa0886330:intron 30.0%
!! TGTACATGATCCATTTTTGA+TGG + chr6_1:44695940-44695959 Msa0886330:intron 30.0%
AATATTAGTATCCAAGCACT+TGG + chr6_1:44696120-44696139 Msa0886330:intron 30.0%
ATATTAGTATCCAAGCACTT+GGG + chr6_1:44696121-44696140 Msa0886330:intron 30.0%
!!! CCTTTACTAGTTTTTAATGG+AGG - chr6_1:44696150-44696169 None:intergenic 30.0%
CCTCCATTAAAAACTAGTAA+AGG + chr6_1:44696147-44696166 Msa0886330:intron 30.0%
ATATAGTTATATACTCCCTC+TGG + chr6_1:44696613-44696632 Msa0886330:intron 30.0%
AAGAAACATAGGTCAACAAA+AGG + chr6_1:44696646-44696665 Msa0886330:intron 30.0%
GATGTATCTGGTTAAGAATT+TGG + chr6_1:44696670-44696689 Msa0886330:intron 30.0%
! TCAACAACAGTTGATGTATT+TGG - chr6_1:44696697-44696716 None:intergenic 30.0%
CAGAATGAGTTAGATTATTG+TGG + chr6_1:44696935-44696954 Msa0886330:intron 30.0%
!! TGGCTGATTTTCACAATAAT+CGG - chr6_1:44697101-44697120 None:intergenic 30.0%
ACAAACCAATAGACAAGAAT+AGG - chr6_1:44697290-44697309 None:intergenic 30.0%
TTTGAACCTTTAGATTTCAG+GGG + chr6_1:44697527-44697546 Msa0886330:three_prime_UTR 30.0%
GGACAAATACAGATTTACAA+GGG - chr6_1:44697572-44697591 None:intergenic 30.0%
TGGACAAATACAGATTTACA+AGG - chr6_1:44697573-44697592 None:intergenic 30.0%
!!! TTGTTGATTCGGCTTTTAAG+GGG - chr6_1:44691066-44691085 None:intergenic 35.0%
!!! GTTGTTGATTCGGCTTTTAA+GGG - chr6_1:44691067-44691086 None:intergenic 35.0%
!!! TGTTGTTGATTCGGCTTTTA+AGG - chr6_1:44691068-44691087 None:intergenic 35.0%
! AATGAGGGTTGTTGTTGATT+CGG - chr6_1:44691077-44691096 None:intergenic 35.0%
GTAAAGCTGAGAAAGAGAAT+TGG - chr6_1:44691211-44691230 None:intergenic 35.0%
AGAAAGCTTCTGATGATTCA+TGG - chr6_1:44691241-44691260 None:intergenic 35.0%
TTGATATTGTCAGTTGAGCT+AGG - chr6_1:44691715-44691734 None:intergenic 35.0%
!!! AACGTTTTTTCGTGGTTACT+CGG + chr6_1:44691748-44691767 Msa0886330:intron 35.0%
!! AACTTTGATTTTGGCGTTGT+TGG + chr6_1:44691860-44691879 Msa0886330:intron 35.0%
GTCTTAGGTTTAATTCTTCC+TGG + chr6_1:44691893-44691912 Msa0886330:intron 35.0%
TTTGTAAGACCAAGCTCAAT+TGG + chr6_1:44692016-44692035 Msa0886330:intron 35.0%
AGTGTATTGCAGAACAATAG+CGG + chr6_1:44692328-44692347 Msa0886330:intron 35.0%
GTTAGAGCGAACATTATTCA+TGG + chr6_1:44692651-44692670 Msa0886330:intron 35.0%
GTAATCCCAAATTTGAACTC+GGG - chr6_1:44692680-44692699 None:intergenic 35.0%
! CTGTGTGTATGTGAGTTTTA+AGG + chr6_1:44692701-44692720 Msa0886330:intron 35.0%
!!! TGTGTATGTGAGTTTTAAGG+TGG + chr6_1:44692704-44692723 Msa0886330:intron 35.0%
!! TTGTTTGGTGCGATTTATGT+TGG + chr6_1:44693105-44693124 Msa0886330:intron 35.0%
!! TGTTTGGTGCGATTTATGTT+GGG + chr6_1:44693106-44693125 Msa0886330:intron 35.0%
TCAGTATTGCTAGATCAACT+AGG - chr6_1:44693311-44693330 None:intergenic 35.0%
ACCTTAAAACTCACACAAAG+CGG - chr6_1:44693392-44693411 None:intergenic 35.0%
! CTTGCCACTTAATTAAGCAT+TGG + chr6_1:44693416-44693435 Msa0886330:intron 35.0%
! CCAACTTTTCTCTACAACAT+AGG - chr6_1:44693472-44693491 None:intergenic 35.0%
CCTATGTTGTAGAGAAAAGT+TGG + chr6_1:44693469-44693488 Msa0886330:intron 35.0%
ATGTTGTAGAGAAAAGTTGG+TGG + chr6_1:44693472-44693491 Msa0886330:intron 35.0%
! TGTTGTAGAGAAAAGTTGGT+GGG + chr6_1:44693473-44693492 Msa0886330:intron 35.0%
AAAAACAATGTGGGAAAAGG+AGG - chr6_1:44693685-44693704 None:intergenic 35.0%
TTGCAGATAGCAGAAAATAG+TGG - chr6_1:44694104-44694123 None:intergenic 35.0%
TGTTGAGGAAATAGTTTGAG+TGG + chr6_1:44694246-44694265 Msa0886330:intron 35.0%
TGGATTTGGAAACAAGAAGA+AGG + chr6_1:44694513-44694532 Msa0886330:CDS 35.0%
ATTTGGAAACAAGAAGAAGG+AGG + chr6_1:44694516-44694535 Msa0886330:CDS 35.0%
TTTGGAAACAAGAAGAAGGA+GGG + chr6_1:44694517-44694536 Msa0886330:CDS 35.0%
AAAACATCTACACGTAGTAC+TGG + chr6_1:44694672-44694691 Msa0886330:intron 35.0%
TAGACTATTGACGTGATTCT+AGG + chr6_1:44694981-44695000 Msa0886330:intron 35.0%
AACCACTTGACAACCAAAAA+GGG - chr6_1:44695016-44695035 None:intergenic 35.0%
! GTTTTTATATTGGGAAGGCT+TGG + chr6_1:44695093-44695112 Msa0886330:intron 35.0%
!! TTCTCACTTCAAGTTTTAGC+CGG - chr6_1:44695127-44695146 None:intergenic 35.0%
GAAGTTGTTATCCTTTCTTG+TGG + chr6_1:44695266-44695285 Msa0886330:intron 35.0%
! GGTGAACAGTAAAGAGTATA+TGG + chr6_1:44695315-44695334 Msa0886330:intron 35.0%
GTGAAAAAGAATGAGAGCAA+TGG - chr6_1:44695469-44695488 None:intergenic 35.0%
!! TTGCTCTCATTCTTTTTCAC+CGG + chr6_1:44695469-44695488 Msa0886330:intron 35.0%
TGGTATGAATGGAAAAATGG+AGG + chr6_1:44695681-44695700 Msa0886330:intron 35.0%
!! AAAAATGGAGGCATCTCATT+GGG + chr6_1:44695693-44695712 Msa0886330:intron 35.0%
ATTGGGATGCAAGTGTAAAA+CGG + chr6_1:44695710-44695729 Msa0886330:intron 35.0%
TCACAACAAGATGAAGAACA+AGG - chr6_1:44695761-44695780 None:intergenic 35.0%
TCACAACAAGATGAAGAACA+AGG - chr6_1:44695761-44695780 None:intergenic 35.0%
ATGATCACTGCCATCAAAAA+TGG - chr6_1:44695953-44695972 None:intergenic 35.0%
!!! CAGTGATCATTTTCTAGGAT+TGG + chr6_1:44695963-44695982 Msa0886330:intron 35.0%
TGTAATCAAATCCTGGTTGT+TGG - chr6_1:44696359-44696378 None:intergenic 35.0%
GTCCTATACAGAAGAAACAT+AGG + chr6_1:44696635-44696654 Msa0886330:intron 35.0%
GACCTATGTTTCTTCTGTAT+AGG - chr6_1:44696640-44696659 None:intergenic 35.0%
TCAACAAAAGGTGATGTATC+TGG + chr6_1:44696658-44696677 Msa0886330:intron 35.0%
TCTCTTATAAATATGACCGG+AGG + chr6_1:44696725-44696744 Msa0886330:intron 35.0%
TGAAAATCAGCCAAAGAACT+CGG + chr6_1:44697108-44697127 Msa0886330:CDS 35.0%
TTTGAAAACACCGAGTTCTT+TGG - chr6_1:44697121-44697140 None:intergenic 35.0%
! TCAGCTTTATCAAATTGGTG+AGG + chr6_1:44697171-44697190 Msa0886330:CDS 35.0%
! CAGCTTTATCAAATTGGTGA+GGG + chr6_1:44697172-44697191 Msa0886330:CDS 35.0%
TTCCAATAATGATTCTGCCA+TGG + chr6_1:44697246-44697265 Msa0886330:CDS 35.0%
ATCCATGGCAGAATCATTAT+TGG - chr6_1:44697251-44697270 None:intergenic 35.0%
CTAGTCCTATTCTTGTCTAT+TGG + chr6_1:44697282-44697301 Msa0886330:exon 35.0%
ATCGTGCAAGAAATGATAAG+AGG + chr6_1:44697404-44697423 Msa0886330:three_prime_UTR 35.0%
TCGTGCAAGAAATGATAAGA+GGG + chr6_1:44697405-44697424 Msa0886330:three_prime_UTR 35.0%
CGCATTGAAAAACTTTACAG+AGG - chr6_1:44697501-44697520 None:intergenic 35.0%
AACAACTGTAAATCGCCATA+CGG - chr6_1:44697606-44697625 None:intergenic 35.0%
!!! TGTTGATTCGGCTTTTAAGG+GGG - chr6_1:44691065-44691084 None:intergenic 40.0%
! CAGAAGCTTTCTTTTCATGC+TGG + chr6_1:44691249-44691268 Msa0886330:CDS 40.0%
AGGAGAGAGAGAAAGAGATT+TGG - chr6_1:44691302-44691321 None:intergenic 40.0%
CTAGTTCAAGCTATGAAGCA+CGG + chr6_1:44691492-44691511 Msa0886330:intron 40.0%
GACACTCCTTGTATTATACG+TGG + chr6_1:44691514-44691533 Msa0886330:intron 40.0%
TCCTTGTATTATACGTGGTC+CGG + chr6_1:44691519-44691538 Msa0886330:intron 40.0%
! ATTCTTCCTGGTGCCAATTT+CGG + chr6_1:44691905-44691924 Msa0886330:intron 40.0%
CTAAACTAACCGACCGAAAT+TGG - chr6_1:44691921-44691940 None:intergenic 40.0%
CTCATGTTGTAGAGAAGAGT+TGG + chr6_1:44692169-44692188 Msa0886330:intron 40.0%
ATGTTGTAGAGAAGAGTTGG+TGG + chr6_1:44692172-44692191 Msa0886330:intron 40.0%
! TGTTGTAGAGAAGAGTTGGT+GGG + chr6_1:44692173-44692192 Msa0886330:intron 40.0%
TGGTTACCCGAGTTCAAATT+TGG + chr6_1:44692671-44692690 Msa0886330:intron 40.0%
GGTTACCCGAGTTCAAATTT+GGG + chr6_1:44692672-44692691 Msa0886330:intron 40.0%
TCTCTGTTGTAGAGAAGAGT+TGG + chr6_1:44693058-44693077 Msa0886330:intron 40.0%
GCTAGATCAACTAGGTCTTT+CGG - chr6_1:44693303-44693322 None:intergenic 40.0%
!! TAGTTACTCGGGTTGCATTT+TGG + chr6_1:44693361-44693380 Msa0886330:intron 40.0%
!! AGTTACTCGGGTTGCATTTT+GGG + chr6_1:44693362-44693381 Msa0886330:intron 40.0%
CCTTAAAACTCACACAAAGC+GGG - chr6_1:44693391-44693410 None:intergenic 40.0%
!!! GCTTTGTGTGAGTTTTAAGG+TGG + chr6_1:44693391-44693410 Msa0886330:intron 40.0%
TGGCACTACCGAAATTGATA+GGG + chr6_1:44693619-44693638 Msa0886330:intron 40.0%
! AGACATTTTCCGTGGTTACT+CGG + chr6_1:44693643-44693662 Msa0886330:intron 40.0%
CTCATGATGTAGAGATGAGT+TGG + chr6_1:44693788-44693807 Msa0886330:intron 40.0%
! ATGATGTAGAGATGAGTTGG+TGG + chr6_1:44693791-44693810 Msa0886330:intron 40.0%
!! TGATGTAGAGATGAGTTGGT+GGG + chr6_1:44693792-44693811 Msa0886330:intron 40.0%
! TTGTCAGATATCGGCTATAG+TGG + chr6_1:44694042-44694061 Msa0886330:intron 40.0%
!!! TCTTTTGAAGCATTGTGCTG+TGG + chr6_1:44694177-44694196 Msa0886330:intron 40.0%
TGAGAGATTGACTGCAACAA+AGG + chr6_1:44694751-44694770 Msa0886330:intron 40.0%
AAAGTACAGCTGCAATTGCA+TGG + chr6_1:44694876-44694895 Msa0886330:intron 40.0%
TATTGACGTGATTCTAGGCA+TGG + chr6_1:44694986-44695005 Msa0886330:intron 40.0%
CAACCACTTGACAACCAAAA+AGG - chr6_1:44695017-44695036 None:intergenic 40.0%
CAGAATAACAGGTCACGTTA+CGG - chr6_1:44695047-44695066 None:intergenic 40.0%
GCTTGAGATGGTACTAATGA+GGG + chr6_1:44695289-44695308 Msa0886330:intron 40.0%
!! GAAAAATGGAGGCATCTCAT+TGG + chr6_1:44695692-44695711 Msa0886330:intron 40.0%
! GATGGCAGTGATCATTTTCT+AGG + chr6_1:44695958-44695977 Msa0886330:intron 40.0%
CATCCTATACTACTCGATGT+GGG + chr6_1:44696200-44696219 Msa0886330:intron 40.0%
GACAGGGACAAGACAATTAT+GGG - chr6_1:44696235-44696254 None:intergenic 40.0%
TGACAGGGACAAGACAATTA+TGG - chr6_1:44696236-44696255 None:intergenic 40.0%
!! TTTTTGGTCAGCCCATTTGT+AGG + chr6_1:44696316-44696335 Msa0886330:intron 40.0%
AGAAAGGGCTACCTACAAAT+GGG - chr6_1:44696330-44696349 None:intergenic 40.0%
AAGAAAGGGCTACCTACAAA+TGG - chr6_1:44696331-44696350 None:intergenic 40.0%
! GGTTGTTGGTGTCTAAGAAA+GGG - chr6_1:44696345-44696364 None:intergenic 40.0%
! TGGTTGTTGGTGTCTAAGAA+AGG - chr6_1:44696346-44696365 None:intergenic 40.0%
TTTCTTAGACACCAACAACC+AGG + chr6_1:44696345-44696364 Msa0886330:intron 40.0%
TTCTTCTGTATAGGACCAGA+GGG - chr6_1:44696631-44696650 None:intergenic 40.0%
TTTCTTCTGTATAGGACCAG+AGG - chr6_1:44696632-44696651 None:intergenic 40.0%
CTTTATCAAATTGGTGAGGG+TGG + chr6_1:44697175-44697194 Msa0886330:CDS 40.0%
! TTGCAGTTTTTGCAGAAGAC+AGG - chr6_1:44697333-44697352 None:intergenic 40.0%
CAAGGAATTGTGATGGTTGT+TGG - chr6_1:44697362-44697381 None:intergenic 40.0%
AACCATCACAATTCCTTGTC+TGG + chr6_1:44697364-44697383 Msa0886330:three_prime_UTR 40.0%
ATCCAGACAAGGAATTGTGA+TGG - chr6_1:44697369-44697388 None:intergenic 40.0%
TGCAAGAAATGATAAGAGGG+TGG + chr6_1:44697408-44697427 Msa0886330:three_prime_UTR 40.0%
AAGCAACCCCTGAAATCTAA+AGG - chr6_1:44697536-44697555 None:intergenic 40.0%
GGGGAGATTATGGAAAGAGA+GGG - chr6_1:44691046-44691065 None:intergenic 45.0%
!! GGCTTTTAAGGGGGAGATTA+TGG - chr6_1:44691056-44691075 None:intergenic 45.0%
CGTTTCTTCGCCATTGGAAT+CGG - chr6_1:44691123-44691142 None:intergenic 45.0%
GACTTACGTTTCTTCGCCAT+TGG - chr6_1:44691129-44691148 None:intergenic 45.0%
CTGAGAAAGAGAATTGGCAG+CGG - chr6_1:44691205-44691224 None:intergenic 45.0%
CGTGCTTCATAGCTTGAACT+AGG - chr6_1:44691494-44691513 None:intergenic 45.0%
ACCGGACCACGTATAATACA+AGG - chr6_1:44691523-44691542 None:intergenic 45.0%
! ATTATATGCGTCGGTCACAC+CGG - chr6_1:44691541-44691560 None:intergenic 45.0%
!! GTTGGCTTTGACTCAGTCTT+AGG + chr6_1:44691878-44691897 Msa0886330:intron 45.0%
GATAGCAGAGCCATACTGTA+TGG - chr6_1:44692287-44692306 None:intergenic 45.0%
CTGCTACGTTGTAGCAGTAT+GGG - chr6_1:44692394-44692413 None:intergenic 45.0%
! TTGTCAGATAGCGGCTATAG+TGG + chr6_1:44692449-44692468 Msa0886330:intron 45.0%
GGATACTTGGGTTTGAACTC+AGG + chr6_1:44692956-44692975 Msa0886330:intron 45.0%
TCCGATTTCCGGTAGTTACT+CGG + chr6_1:44693349-44693368 Msa0886330:intron 45.0%
AATGCAACCCGAGTAACTAC+CGG - chr6_1:44693360-44693379 None:intergenic 45.0%
! CCCGCTTTGTGTGAGTTTTA+AGG + chr6_1:44693388-44693407 Msa0886330:intron 45.0%
CTGGCACTACCGAAATTGAT+AGG + chr6_1:44693618-44693637 Msa0886330:intron 45.0%
! GATAGGGTAGACATTTTCCG+TGG + chr6_1:44693635-44693654 Msa0886330:intron 45.0%
! GACATTTTCCGTGGTTACTC+GGG + chr6_1:44693644-44693663 Msa0886330:intron 45.0%
AGTTCAAACCCGAGTAACCA+CGG - chr6_1:44693655-44693674 None:intergenic 45.0%
!! TGAAGCATTGTGCTGTGGTA+TGG + chr6_1:44694182-44694201 Msa0886330:intron 45.0%
TTATGCATGCTTCGGCTGAT+TGG + chr6_1:44694615-44694634 Msa0886330:intron 45.0%
ATTGGAAGTGGGGGACTATA+TGG + chr6_1:44694633-44694652 Msa0886330:intron 45.0%
ATGAAGCAGCTTCGTAAAGC+TGG + chr6_1:44694812-44694831 Msa0886330:intron 45.0%
TACAGCCACAAAAGTGGTTG+TGG + chr6_1:44694940-44694959 Msa0886330:intron 45.0%
!! TAGGCATGGTTTGCCCTTTT+TGG + chr6_1:44695000-44695019 Msa0886330:intron 45.0%
!!! TGCCCTTTTTGGTTGTCAAG+TGG + chr6_1:44695011-44695030 Msa0886330:intron 45.0%
GGCTTGAGATGGTACTAATG+AGG + chr6_1:44695288-44695307 Msa0886330:intron 45.0%
AGATGGTACTAATGAGGGAC+TGG + chr6_1:44695294-44695313 Msa0886330:intron 45.0%
!! AATCCTAGTGTTTTCAGGCG+TGG - chr6_1:44695376-44695395 None:intergenic 45.0%
GAACAGAGGTGAGAAACAAG+AGG - chr6_1:44695421-44695440 None:intergenic 45.0%
CATCTTCTGGCAACTTTCTC+CGG + chr6_1:44695496-44695515 Msa0886330:intron 45.0%
AGCCATCAAAGGATTCTCAC+CGG - chr6_1:44695518-44695537 None:intergenic 45.0%
! AATCCTTTGATGGCTGCATC+TGG + chr6_1:44695523-44695542 Msa0886330:intron 45.0%
GAGACATGGTTGTGGGATAT+TGG + chr6_1:44695911-44695930 Msa0886330:intron 45.0%
GCATCCTATACTACTCGATG+TGG + chr6_1:44696199-44696218 Msa0886330:intron 45.0%
AGTCCCACATCGAGTAGTAT+AGG - chr6_1:44696206-44696225 None:intergenic 45.0%
ACTCTCTGCGGTGTTTCATT+CGG + chr6_1:44696291-44696310 Msa0886330:intron 45.0%
! GGTGTTTCATTCGGGCTTTT+TGG + chr6_1:44696300-44696319 Msa0886330:intron 45.0%
GAACTGGTGACAGGTATCAT+TGG - chr6_1:44697013-44697032 None:intergenic 45.0%
ATGATACCTGTCACCAGTTC+AGG + chr6_1:44697013-44697032 Msa0886330:CDS 45.0%
ACTTCTGGCCAAACAATAGC+TGG + chr6_1:44697055-44697074 Msa0886330:CDS 45.0%
CTTCTGGCCAAACAATAGCT+GGG + chr6_1:44697056-44697075 Msa0886330:CDS 45.0%
TTCTGGCCAAACAATAGCTG+GGG + chr6_1:44697057-44697076 Msa0886330:CDS 45.0%
GCTGAAGATTTCGACGAACA+GGG - chr6_1:44697156-44697175 None:intergenic 45.0%
AGCTGAAGATTTCGACGAAC+AGG - chr6_1:44697157-44697176 None:intergenic 45.0%
CTAGTCTGCATGCATATCCA+TGG - chr6_1:44697266-44697285 None:intergenic 45.0%
AGAGCAAGCAAATCCAGACA+AGG - chr6_1:44697380-44697399 None:intergenic 45.0%
! GTCTGGATTTGCTTGCTCTT+TGG + chr6_1:44697381-44697400 Msa0886330:three_prime_UTR 45.0%
AAGACTCCAAACCAATCGCT+TGG - chr6_1:44697472-44697491 None:intergenic 45.0%
GTCCACAGATTCTATCCGTA+TGG + chr6_1:44697588-44697607 Msa0886330:three_prime_UTR 45.0%
CGATTTACAGTTGTTGACGC+CGG + chr6_1:44697611-44697630 Msa0886330:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTTGTT+TGG + chr6_1:44693090-44693109 Msa0886330:intron 5.0%
GGGGGAGATTATGGAAAGAG+AGG - chr6_1:44691047-44691066 None:intergenic 50.0%
TTCTTCGCCATTGGAATCGG+CGG - chr6_1:44691120-44691139 None:intergenic 50.0%
CAAGTCTCGACGAAGTCGAT+CGG + chr6_1:44691157-44691176 Msa0886330:CDS 50.0%
! GGTGGAGAAGGAAGCATACA+TGG - chr6_1:44691184-44691203 None:intergenic 50.0%
AGAAAGAGAATTGGCAGCGG+TGG - chr6_1:44691202-44691221 None:intergenic 50.0%
! TTCCTGGTGCCAATTTCGGT+CGG + chr6_1:44691909-44691928 Msa0886330:intron 50.0%
ACCTTAAACTCACACCCGAG+CGG - chr6_1:44692104-44692123 None:intergenic 50.0%
TATAGCGGCGCCATACAGTA+TGG + chr6_1:44692274-44692293 Msa0886330:intron 50.0%
GCTGCTACGTTGTAGCAGTA+TGG - chr6_1:44692395-44692414 None:intergenic 50.0%
CCCGAGTAACTACCGGAAAT+CGG - chr6_1:44693353-44693372 None:intergenic 50.0%
CCGATTTCCGGTAGTTACTC+GGG + chr6_1:44693350-44693369 Msa0886330:intron 50.0%
TCGGTAAGACCTAGCTCAAC+TGG + chr6_1:44693599-44693618 Msa0886330:intron 50.0%
GGTTACTCGGGTTTGAACTC+AGG + chr6_1:44693656-44693675 Msa0886330:intron 50.0%
AACAAGAAGAAGGAGGGTCG+AGG + chr6_1:44694523-44694542 Msa0886330:CDS 50.0%
ACAAGAAGAAGGAGGGTCGA+GGG + chr6_1:44694524-44694543 Msa0886330:CDS 50.0%
ATGCTTCGGCTGATTGGAAG+TGG + chr6_1:44694621-44694640 Msa0886330:intron 50.0%
TGCTTCGGCTGATTGGAAGT+GGG + chr6_1:44694622-44694641 Msa0886330:intron 50.0%
GGCTGATACAGCCACAAAAG+TGG + chr6_1:44694934-44694953 Msa0886330:intron 50.0%
!! GGCATCCACAACCACTTTTG+TGG - chr6_1:44694948-44694967 None:intergenic 50.0%
GGTTGTGGATGCCTTCCATA+TGG + chr6_1:44694955-44694974 Msa0886330:intron 50.0%
! GGAAGGCTTGGTCAATGAAC+CGG + chr6_1:44695105-44695124 Msa0886330:intron 50.0%
CCATCTCAAGCCCACAAGAA+AGG - chr6_1:44695280-44695299 None:intergenic 50.0%
CCTTTCTTGTGGGCTTGAGA+TGG + chr6_1:44695277-44695296 Msa0886330:intron 50.0%
CAGGCGTGGTCATATGAGAA+AGG - chr6_1:44695362-44695381 None:intergenic 50.0%
TGACCACGCCTGAAAACACT+AGG + chr6_1:44695370-44695389 Msa0886330:intron 50.0%
TTTCACCGGAGACCATCTTC+TGG + chr6_1:44695483-44695502 Msa0886330:intron 50.0%
AGTTGCCAGAAGATGGTCTC+CGG - chr6_1:44695491-44695510 None:intergenic 50.0%
CGGAGAAAGTTGCCAGAAGA+TGG - chr6_1:44695498-44695517 None:intergenic 50.0%
CTCCGGTGAGAATCCTTTGA+TGG + chr6_1:44695513-44695532 Msa0886330:intron 50.0%
TGACCAGATGCAGCCATCAA+AGG - chr6_1:44695529-44695548 None:intergenic 50.0%
! GGATTGGCAGAGTTGTCTTG+TGG + chr6_1:44695979-44695998 Msa0886330:intron 50.0%
CTCTCTGCGGTGTTTCATTC+GGG + chr6_1:44696292-44696311 Msa0886330:intron 50.0%
! GTGACAGGTATCATTGGCTG+TGG - chr6_1:44697007-44697026 None:intergenic 50.0%
AGTGACTGGAAAGCCTGAAC+TGG - chr6_1:44697029-44697048 None:intergenic 50.0%
TCAGGCTTTCCAGTCACTTC+AGG + chr6_1:44697031-44697050 Msa0886330:CDS 50.0%
CCAGAAGTTCCTGAAGTGAC+TGG - chr6_1:44697043-44697062 None:intergenic 50.0%
CCAGTCACTTCAGGAACTTC+TGG + chr6_1:44697040-44697059 Msa0886330:CDS 50.0%
CGCCATACGGATAGAATCTG+TGG - chr6_1:44697593-44697612 None:intergenic 50.0%
!! GGTGGTGGATGGAGGAATGA+GGG - chr6_1:44691092-44691111 None:intergenic 55.0%
CCATTGGAATCGGCGGAGAT+CGG - chr6_1:44691113-44691132 None:intergenic 55.0%
GACTTCGTCGAGACTTGACG+CGG - chr6_1:44691154-44691173 None:intergenic 55.0%
AGAATTGGCAGCGGTGGAGA+AGG - chr6_1:44691196-44691215 None:intergenic 55.0%
AACCGACCGAAATTGGCACC+AGG - chr6_1:44691914-44691933 None:intergenic 55.0%
CGAATTTCGGGATTCCCGCT+CGG + chr6_1:44692086-44692105 Msa0886330:intron 55.0%
GAATTTCGGGATTCCCGCTC+GGG + chr6_1:44692087-44692106 Msa0886330:intron 55.0%
CCTTAAACTCACACCCGAGC+GGG - chr6_1:44692103-44692122 None:intergenic 55.0%
GCTCGGGTGTGAGTTTAAGG+TGG + chr6_1:44692103-44692122 Msa0886330:intron 55.0%
! AGACGGGGCATTCCGATTTC+CGG + chr6_1:44693338-44693357 Msa0886330:intron 55.0%
TCGGTAGTGCCAGTTGAGCT+AGG - chr6_1:44693611-44693630 None:intergenic 55.0%
!! AGTACCTACCGGCTCTGTAG+CGG + chr6_1:44693879-44693898 Msa0886330:intron 55.0%
TCCAAATCCCGCTACAGAGC+CGG - chr6_1:44693890-44693909 None:intergenic 55.0%
GCTTCGGCTGATTGGAAGTG+GGG + chr6_1:44694623-44694642 Msa0886330:intron 55.0%
CTTCGGCTGATTGGAAGTGG+GGG + chr6_1:44694624-44694643 Msa0886330:intron 55.0%
TCTCAGGGGCTGCTATGACA+GGG - chr6_1:44696251-44696270 None:intergenic 55.0%
ACCGAGACGTCAACTCTCAG+GGG - chr6_1:44696265-44696284 None:intergenic 55.0%
CACCGAGACGTCAACTCTCA+GGG - chr6_1:44696266-44696285 None:intergenic 55.0%
TCACCGAGACGTCAACTCTC+AGG - chr6_1:44696267-44696286 None:intergenic 55.0%
! GTATCATTGGCTGTGGCTGC+TGG - chr6_1:44697000-44697019 None:intergenic 55.0%
GGAAAGCCTGAACTGGTGAC+AGG - chr6_1:44697022-44697041 None:intergenic 55.0%
GCTTACGTCGACCAAGCGAT+TGG + chr6_1:44697458-44697477 Msa0886330:three_prime_UTR 55.0%
! CGTCGACCAAGCGATTGGTT+TGG + chr6_1:44697463-44697482 Msa0886330:three_prime_UTR 55.0%
!! CGGTGGTGGATGGAGGAATG+AGG - chr6_1:44691093-44691112 None:intergenic 60.0%
TTGGAATCGGCGGAGATCGG+TGG - chr6_1:44691110-44691129 None:intergenic 60.0%
!! CCGATCTCCGCCGATTCCAA+TGG + chr6_1:44691110-44691129 Msa0886330:exon 60.0%
TTCGTCGAGACTTGACGCGG+CGG - chr6_1:44691151-44691170 None:intergenic 60.0%
CCCGCTCGGGTGTGAGTTTA+AGG + chr6_1:44692100-44692119 Msa0886330:intron 60.0%
!! GTACCTACCGGCTCTGTAGC+GGG + chr6_1:44693880-44693899 Msa0886330:intron 60.0%
AATCCCGCTACAGAGCCGGT+AGG - chr6_1:44693886-44693905 None:intergenic 60.0%
! ACCGGCTCTGTAGCGGGATT+TGG + chr6_1:44693886-44693905 Msa0886330:intron 60.0%
ATGGAGGGCTCCCAAGTGCT+TGG - chr6_1:44696134-44696153 None:intergenic 60.0%
CTCTCAGGGGCTGCTATGAC+AGG - chr6_1:44696252-44696271 None:intergenic 60.0%
GCCCCTGAGAGTTGACGTCT+CGG + chr6_1:44696261-44696280 Msa0886330:intron 60.0%
CTCGGTGACTGCACTCTCTG+CGG + chr6_1:44696279-44696298 Msa0886330:intron 60.0%
!! TGGTTTTGCGGTGGCGCTCT+GGG - chr6_1:44696980-44696999 None:intergenic 60.0%
!!! TGTGGCTGCTGGTTTTGCGG+TGG - chr6_1:44696989-44697008 None:intergenic 60.0%
!!! GGCTGTGGCTGCTGGTTTTG+CGG - chr6_1:44696992-44697011 None:intergenic 60.0%
GGCCAAACAATAGCTGGGGC+CGG + chr6_1:44697061-44697080 Msa0886330:CDS 60.0%
GCCAAACAATAGCTGGGGCC+GGG + chr6_1:44697062-44697081 Msa0886330:CDS 60.0%
ATCGGAGCGTAGTCCTTGCC+CGG - chr6_1:44697083-44697102 None:intergenic 60.0%
!! CGGAGATCGGTGGTGGATGG+AGG - chr6_1:44691100-44691119 None:intergenic 65.0%
GAATCGGCGGAGATCGGTGG+TGG - chr6_1:44691107-44691126 None:intergenic 65.0%
! GGCGCTCTGGGTGACATGGA+TGG - chr6_1:44696968-44696987 None:intergenic 65.0%
!!! CTGGTTTTGCGGTGGCGCTC+TGG - chr6_1:44696981-44697000 None:intergenic 65.0%
GCCCGGCCCCAGCTATTGTT+TGG - chr6_1:44697066-44697085 None:intergenic 65.0%
ACAATAGCTGGGGCCGGGCA+AGG + chr6_1:44697067-44697086 Msa0886330:CDS 65.0%
!! CGGCGGAGATCGGTGGTGGA+TGG - chr6_1:44691103-44691122 None:intergenic 70.0%
! CGGTGGCGCTCTGGGTGACA+TGG - chr6_1:44696972-44696991 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 44691039 44697804 44691039 ID=Msa0886330;Name=Msa0886330
chr6_1 mRNA 44691039 44697804 44691039 ID=Msa0886330-mRNA-1;Parent=Msa0886330;Name=Msa0886330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=90|1|1|1|1|1|3|519|195
chr6_1 exon 44691039 44691287 44691039 ID=Msa0886330-mRNA-1:exon:9606;Parent=Msa0886330-mRNA-1
chr6_1 exon 44694498 44694578 44694498 ID=Msa0886330-mRNA-1:exon:9607;Parent=Msa0886330-mRNA-1
chr6_1 exon 44696938 44697804 44696938 ID=Msa0886330-mRNA-1:exon:9608;Parent=Msa0886330-mRNA-1
chr6_1 five_prime_UTR 44691039 44691128 44691039 ID=Msa0886330-mRNA-1:five_prime_utr;Parent=Msa0886330-mRNA-1
chr6_1 CDS 44691129 44691287 44691129 ID=Msa0886330-mRNA-1:cds;Parent=Msa0886330-mRNA-1
chr6_1 CDS 44694498 44694578 44694498 ID=Msa0886330-mRNA-1:cds;Parent=Msa0886330-mRNA-1
chr6_1 CDS 44696938 44697285 44696938 ID=Msa0886330-mRNA-1:cds;Parent=Msa0886330-mRNA-1
chr6_1 three_prime_UTR 44697286 44697804 44697286 ID=Msa0886330-mRNA-1:three_prime_utr;Parent=Msa0886330-mRNA-1
Gene Sequence

>Msa0886330

ATGGCGAAGAAACGTAAGTCCGCCGCGTCAAGTCTCGACGAAGTCGATCGGACCATGTATGCTTCCTTCTCCACCGCTGCCAATTCTCTTTCTCAGCTTTACTCTCATGCCATGAATCATCAGAAGCTTTCTTTTCATGCTGGTGAACGTAACGCTCTTGAAAAACTTTATCAGTGGATTTGGAAACAAGAAGAAGGAGGGTCGAGGGTTGCAACAGTTGATGTAGTTAACTACATTCAGAATGAGTTAGATTATTGTGGAGAAGAGCCATCCATGTCACCCAGAGCGCCACCGCAAAACCAGCAGCCACAGCCAATGATACCTGTCACCAGTTCAGGCTTTCCAGTCACTTCAGGAACTTCTGGCCAAACAATAGCTGGGGCCGGGCAAGGACTACGCTCCGATTATTGTGAAAATCAGCCAAAGAACTCGGTGTTTTCAAATGCATTATCAAGCCCTGTTCGTCGAAATCTTCAGCTTTATCAAATTGGTGAGGGTGGAAATCGCAGCTTTCTGCACAATCAAAGCAGCGAATCAAATGCAGTTAGTTCCAATAATGATTCTGCCATGGATATGCATGCAGACTAG
Protein sequence

>Msa0886330

MAKKRKSAASSLDEVDRTMYASFSTAANSLSQLYSHAMNHQKLSFHAGERNALEKLYQWIWKQEEGGSRVATVDVVNYIQNELDYCGEEPSMSPRAPPQNQQPQPMIPVTSSGFPVTSGTSGQTIAGAGQGLRSDYCENQPKNSVFSNALSSPVRRNLQLYQIGEGGNRSFLHNQSSESNAVSSNNDSAMDMHAD*