Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732840 | XP_024639340.1 | 92.903 | 465 | 21 | 2 | 1 | 465 | 1 | 453 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732840 | sp|Q9S7V4|HA22A_ARATH | 29.730 | 148 | 90 | 3 | 11 | 144 | 11 | 158 | 1.01e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732840 | A0A396HSG0 | 92.903 | 465 | 21 | 2 | 1 | 465 | 1 | 453 | 0.0 | 875 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0732840 | 0.821030 | 5.014231e-53 | -8.615850e-47 |
| Msa0007280 | Msa0732840 | 0.801477 | 8.841025e-49 | -8.615850e-47 |
| Msa0028320 | Msa0732840 | 0.830138 | 3.476812e-55 | -8.615850e-47 |
| Msa0042550 | Msa0732840 | 0.803653 | 3.146454e-49 | -8.615850e-47 |
| Msa0054310 | Msa0732840 | 0.811192 | 7.918257e-51 | -8.615850e-47 |
| Msa0055710 | Msa0732840 | 0.825279 | 5.110751e-54 | -8.615850e-47 |
| Msa0055740 | Msa0732840 | 0.829317 | 5.506466e-55 | -8.615850e-47 |
| Msa0063350 | Msa0732840 | -0.809112 | 2.222704e-50 | -8.615850e-47 |
| Msa0075880 | Msa0732840 | 0.836517 | 8.933638e-57 | -8.615850e-47 |
| Msa0085280 | Msa0732840 | 0.800595 | 1.338627e-48 | -8.615850e-47 |
| Msa0085290 | Msa0732840 | 0.842753 | 2.133446e-58 | -8.615850e-47 |
| Msa0087220 | Msa0732840 | 0.805424 | 1.343972e-49 | -8.615850e-47 |
| Msa0091210 | Msa0732840 | -0.822354 | 2.477979e-53 | -8.615850e-47 |
| Msa0100090 | Msa0732840 | 0.811240 | 7.729229e-51 | -8.615850e-47 |
| Msa0607540 | Msa0732840 | 0.807489 | 4.929228e-50 | -8.615850e-47 |
| Msa0608620 | Msa0732840 | 0.824676 | 7.095338e-54 | -8.615850e-47 |
| Msa0613460 | Msa0732840 | 0.812310 | 4.521501e-51 | -8.615850e-47 |
| Msa0623080 | Msa0732840 | 0.801397 | 9.181283e-49 | -8.615850e-47 |
| Msa0626280 | Msa0732840 | 0.804790 | 1.823851e-49 | -8.615850e-47 |
| Msa0626360 | Msa0732840 | 0.802810 | 4.702431e-49 | -8.615850e-47 |
| Msa0626410 | Msa0732840 | 0.816180 | 6.316547e-52 | -8.615850e-47 |
| Msa0627350 | Msa0732840 | 0.804049 | 2.603519e-49 | -8.615850e-47 |
| Msa0654010 | Msa0732840 | 0.822091 | 2.851917e-53 | -8.615850e-47 |
| Msa0657610 | Msa0732840 | 0.841672 | 4.122210e-58 | -8.615850e-47 |
| Msa0657970 | Msa0732840 | 0.802607 | 5.177857e-49 | -8.615850e-47 |
| Msa0658570 | Msa0732840 | 0.829874 | 4.032875e-55 | -8.615850e-47 |
| Msa0659510 | Msa0732840 | 0.813394 | 2.616741e-51 | -8.615850e-47 |
| Msa0662570 | Msa0732840 | 0.821584 | 3.736298e-53 | -8.615850e-47 |
| Msa0682550 | Msa0732840 | 0.809963 | 1.458913e-50 | -8.615850e-47 |
| Msa0693380 | Msa0732840 | 0.827752 | 1.314952e-54 | -8.615850e-47 |
| Msa0696740 | Msa0732840 | 0.815517 | 8.876107e-52 | -8.615850e-47 |
| Msa0696770 | Msa0732840 | 0.806692 | 7.269653e-50 | -8.615850e-47 |
| Msa0703490 | Msa0732840 | 0.808996 | 2.353182e-50 | -8.615850e-47 |
| Msa0711790 | Msa0732840 | 0.805889 | 1.073256e-49 | -8.615850e-47 |
| Msa0715470 | Msa0732840 | 0.808765 | 2.637455e-50 | -8.615850e-47 |
| Msa0717020 | Msa0732840 | 0.803112 | 4.071327e-49 | -8.615850e-47 |
| Msa0731180 | Msa0732840 | 0.807349 | 5.279854e-50 | -8.615850e-47 |
| Msa0732840 | Msa0744170 | -0.815121 | 1.087367e-51 | -8.615850e-47 |
| Msa0732840 | Msa0764720 | 0.804490 | 2.107149e-49 | -8.615850e-47 |
| Msa0732840 | Msa0780400 | 0.807188 | 5.710061e-50 | -8.615850e-47 |
| Msa0732840 | Msa0800770 | 0.841891 | 3.608498e-58 | -8.615850e-47 |
| Msa0732840 | Msa0806090 | 0.802532 | 5.364335e-49 | -8.615850e-47 |
| Msa0732840 | Msa0810220 | 0.807398 | 5.153657e-50 | -8.615850e-47 |
| Msa0732840 | Msa0811330 | 0.924390 | 7.512620e-90 | -8.615850e-47 |
| Msa0732840 | Msa0816710 | 0.815176 | 1.057338e-51 | -8.615850e-47 |
| Msa0732840 | Msa0830530 | 0.801469 | 8.873452e-49 | -8.615850e-47 |
| Msa0732840 | Msa0838930 | 0.847077 | 1.452706e-59 | -8.615850e-47 |
| Msa0732840 | Msa0842650 | 0.806121 | 9.591136e-50 | -8.615850e-47 |
| Msa0732840 | Msa0843780 | -0.800034 | 1.741817e-48 | -8.615850e-47 |
| Msa0732840 | Msa0844900 | 0.804120 | 2.515917e-49 | -8.615850e-47 |
| Msa0732840 | Msa0867890 | 0.812962 | 3.256444e-51 | -8.615850e-47 |
| Msa0732840 | Msa0870060 | 0.803397 | 3.554780e-49 | -8.615850e-47 |
| Msa0732840 | Msa0870530 | 0.812144 | 4.915486e-51 | -8.615850e-47 |
| Msa0732840 | Msa0886330 | -0.849018 | 4.231572e-60 | -8.615850e-47 |
| Msa0732840 | Msa0896750 | 0.813269 | 2.788055e-51 | -8.615850e-47 |
| Msa0732840 | Msa0913480 | -0.834673 | 2.615837e-56 | -8.615850e-47 |
| Msa0732840 | Msa0923010 | 0.826381 | 2.798573e-54 | -8.615850e-47 |
| Msa0732840 | Msa0924310 | 0.804059 | 2.590049e-49 | -8.615850e-47 |
| Msa0732840 | Msa0926890 | 0.828358 | 9.401272e-55 | -8.615850e-47 |
| Msa0732840 | Msa0935910 | 0.800705 | 1.271390e-48 | -8.615850e-47 |
| Msa0732840 | Msa0961490 | 0.805843 | 1.097522e-49 | -8.615850e-47 |
| Msa0732840 | Msa0964130 | 0.827086 | 1.899345e-54 | -8.615850e-47 |
| Msa0732840 | Msa0969520 | 0.803693 | 3.086876e-49 | -8.615850e-47 |
| Msa0732840 | Msa0973600 | 0.832156 | 1.110379e-55 | -8.615850e-47 |
| Msa0732840 | Msa0975220 | 0.802663 | 5.041507e-49 | -8.615850e-47 |
| Msa0732840 | Msa0977180 | -0.806311 | 8.747599e-50 | -8.615850e-47 |
| Msa0732840 | Msa0990960 | 0.809430 | 1.899596e-50 | -8.615850e-47 |
| Msa0732840 | Msa1026500 | 0.807623 | 4.616784e-50 | -8.615850e-47 |
| Msa0732840 | Msa1033780 | 0.804028 | 2.628755e-49 | -8.615850e-47 |
| Msa0732840 | Msa1068200 | -0.806993 | 6.280544e-50 | -8.615850e-47 |
| Msa0732840 | Msa1073070 | -0.801765 | 7.717220e-49 | -8.615850e-47 |
| Msa0732840 | Msa1073660 | 0.822245 | 2.626255e-53 | -8.615850e-47 |
| Msa0732840 | Msa1074570 | 0.807316 | 5.364103e-50 | -8.615850e-47 |
| Msa0732840 | Msa1080160 | 0.812727 | 3.665813e-51 | -8.615850e-47 |
| Msa0732840 | Msa1082500 | 0.827769 | 1.302523e-54 | -8.615850e-47 |
| Msa0732840 | Msa1084260 | 0.808526 | 2.965904e-50 | -8.615850e-47 |
| Msa0732840 | Msa1089040 | 0.801938 | 7.110306e-49 | -8.615850e-47 |
| Msa0732840 | Msa1107800 | 0.808519 | 2.976757e-50 | -8.615850e-47 |
| Msa0732840 | Msa1111750 | 0.818814 | 1.610379e-52 | -8.615850e-47 |
| Msa0732840 | Msa1118760 | 0.804916 | 1.716736e-49 | -8.615850e-47 |
| Msa0732840 | Msa1124540 | -0.820622 | 6.224844e-53 | -8.615850e-47 |
| Msa0732840 | Msa1139890 | 0.823172 | 1.598314e-53 | -8.615850e-47 |
| Msa0732840 | Msa1179120 | 0.838278 | 3.162720e-57 | -8.615850e-47 |
| Msa0732840 | Msa1185980 | 0.834404 | 3.056869e-56 | -8.615850e-47 |
| Msa0732840 | Msa1195920 | 0.814749 | 1.315074e-51 | -8.615850e-47 |
| Msa0732840 | Msa1214880 | 0.811974 | 5.351271e-51 | -8.615850e-47 |
| Msa0732840 | Msa1240180 | 0.816299 | 5.939728e-52 | -8.615850e-47 |
| Msa0732840 | Msa1249490 | 0.802094 | 6.605113e-49 | -8.615850e-47 |
| Msa0732840 | Msa1259300 | 0.808525 | 2.968049e-50 | -8.615850e-47 |
| Msa0732840 | Msa1276440 | 0.800732 | 1.255468e-48 | -8.615850e-47 |
| Msa0732840 | Msa1278840 | 0.812674 | 3.764029e-51 | -8.615850e-47 |
| Msa0732840 | Msa1291660 | 0.816741 | 4.730887e-52 | -8.615850e-47 |
| Msa0732840 | Msa1298260 | 0.809777 | 1.599864e-50 | -8.615850e-47 |
| Msa0732840 | Msa1310210 | 0.803528 | 3.338770e-49 | -8.615850e-47 |
| Msa0732840 | Msa1314170 | 0.824150 | 9.431035e-54 | -8.615850e-47 |
| Msa0732840 | Msa1314340 | 0.814220 | 1.721568e-51 | -8.615850e-47 |
| Msa0732840 | Msa1320620 | 0.831531 | 1.583304e-55 | -8.615850e-47 |
| Msa0732840 | Msa1328290 | -0.830825 | 2.360942e-55 | -8.615850e-47 |
| Msa0732840 | Msa1333410 | 0.806825 | 6.814482e-50 | -8.615850e-47 |
| Msa0732840 | Msa1335710 | 0.801524 | 8.644439e-49 | -8.615850e-47 |
| Msa0732840 | Msa1344130 | 0.813828 | 2.100385e-51 | -8.615850e-47 |
| Msa0732840 | Msa1360410 | 0.806253 | 9.000602e-50 | -8.615850e-47 |
| Msa0732840 | Msa1372150 | 0.806456 | 8.154121e-50 | -8.615850e-47 |
| Msa0732840 | Msa1372760 | 0.800972 | 1.121208e-48 | -8.615850e-47 |
| Msa0732840 | Msa1376890 | 0.826182 | 3.122105e-54 | -8.615850e-47 |
| Msa0732840 | Msa1379850 | 0.805818 | 1.111169e-49 | -8.615850e-47 |
| Msa0732840 | Msa1381940 | 0.806652 | 7.413637e-50 | -8.615850e-47 |
| Msa0732840 | Msa1390050 | 0.805139 | 1.541702e-49 | -8.615850e-47 |
| Msa0732840 | Msa1392260 | 0.801302 | 9.601114e-49 | -8.615850e-47 |
| Msa0732840 | Msa1393040 | 0.801761 | 7.728758e-49 | -8.615850e-47 |
| Msa0732840 | Msa1393410 | 0.801597 | 8.352789e-49 | -8.615850e-47 |
| Msa0732840 | Msa1394540 | 0.805397 | 1.361878e-49 | -8.615850e-47 |
| Msa0732840 | Msa1398890 | 0.819851 | 9.349842e-53 | -8.615850e-47 |
| Msa0732840 | Msa1408620 | -0.821530 | 3.844782e-53 | -8.615850e-47 |
| Msa0732840 | Msa1416150 | 0.800191 | 1.618421e-48 | -8.615850e-47 |
| Msa0732840 | Msa1424680 | 0.801146 | 1.033281e-48 | -8.615850e-47 |
| Msa0732840 | Msa1435420 | 0.801896 | 7.251173e-49 | -8.615850e-47 |
| Msa0732840 | Msa1438970 | 0.808322 | 3.279181e-50 | -8.615850e-47 |
| Msa0732840 | Msa1451620 | -0.800253 | 1.571770e-48 | -8.615850e-47 |
| Msa0732840 | Msa1453250 | 0.825003 | 5.938753e-54 | -8.615850e-47 |
| Msa0732840 | Msa1457430 | 0.816200 | 6.251457e-52 | -8.615850e-47 |
| Msa0732840 | Msa1463670 | 0.825846 | 3.750674e-54 | -8.615850e-47 |
| Msa0732840 | Msa1466540 | 0.807837 | 4.159155e-50 | -8.615850e-47 |
| Msa0141230 | Msa0732840 | 0.812850 | 3.444874e-51 | -8.615850e-47 |
| Msa0165510 | Msa0732840 | 0.830046 | 3.661335e-55 | -8.615850e-47 |
| Msa0169220 | Msa0732840 | 0.801494 | 8.769127e-49 | -8.615850e-47 |
| Msa0169860 | Msa0732840 | 0.801032 | 1.090040e-48 | -8.615850e-47 |
| Msa0170140 | Msa0732840 | 0.808804 | 2.586856e-50 | -8.615850e-47 |
| Msa0173990 | Msa0732840 | 0.809298 | 2.027216e-50 | -8.615850e-47 |
| Msa0178510 | Msa0732840 | 0.804617 | 1.982092e-49 | -8.615850e-47 |
| Msa0191250 | Msa0732840 | 0.803441 | 3.481369e-49 | -8.615850e-47 |
| Msa0197660 | Msa0732840 | 0.826112 | 3.243460e-54 | -8.615850e-47 |
| Msa0210450 | Msa0732840 | 0.802165 | 6.384168e-49 | -8.615850e-47 |
| Msa0212310 | Msa0732840 | 0.801626 | 8.237469e-49 | -8.615850e-47 |
| Msa0220740 | Msa0732840 | 0.812781 | 3.567213e-51 | -8.615850e-47 |
| Msa0221060 | Msa0732840 | 0.817498 | 3.195947e-52 | -8.615850e-47 |
| Msa0223410 | Msa0732840 | -0.826689 | 2.363929e-54 | -8.615850e-47 |
| Msa0223910 | Msa0732840 | 0.809036 | 2.307431e-50 | -8.615850e-47 |
| Msa0234440 | Msa0732840 | 0.800562 | 1.360044e-48 | -8.615850e-47 |
| Msa0365490 | Msa0732840 | 0.804760 | 1.850155e-49 | -8.615850e-47 |
| Msa0365780 | Msa0732840 | 0.819022 | 1.444135e-52 | -8.615850e-47 |
| Msa0376590 | Msa0732840 | 0.817707 | 2.867792e-52 | -8.615850e-47 |
| Msa0390400 | Msa0732840 | -0.811152 | 8.076516e-51 | -8.615850e-47 |
| Msa0392040 | Msa0732840 | -0.800794 | 1.219620e-48 | -8.615850e-47 |
| Msa0415980 | Msa0732840 | 0.800681 | 1.285749e-48 | -8.615850e-47 |
| Msa0426900 | Msa0732840 | 0.806411 | 8.336116e-50 | -8.615850e-47 |
| Msa0431060 | Msa0732840 | 0.802942 | 4.415973e-49 | -8.615850e-47 |
| Msa0436370 | Msa0732840 | 0.805406 | 1.355659e-49 | -8.615850e-47 |
| Msa0445280 | Msa0732840 | 0.818233 | 2.181167e-52 | -8.615850e-47 |
| Msa0455760 | Msa0732840 | 0.806600 | 7.602534e-50 | -8.615850e-47 |
| Msa0458440 | Msa0732840 | 0.817246 | 3.643084e-52 | -8.615850e-47 |
| Msa0466390 | Msa0732840 | 0.801086 | 1.062739e-48 | -8.615850e-47 |
| Msa0469940 | Msa0732840 | -0.812975 | 3.235116e-51 | -8.615850e-47 |
| Msa0476110 | Msa0732840 | 0.809156 | 2.175386e-50 | -8.615850e-47 |
| Msa0239800 | Msa0732840 | 0.816123 | 6.504172e-52 | -8.615850e-47 |
| Msa0262520 | Msa0732840 | 0.810283 | 1.245244e-50 | -8.615850e-47 |
| Msa0284520 | Msa0732840 | 0.814288 | 1.663152e-51 | -8.615850e-47 |
| Msa0285450 | Msa0732840 | 0.806895 | 6.587521e-50 | -8.615850e-47 |
| Msa0294950 | Msa0732840 | 0.800730 | 1.256480e-48 | -8.615850e-47 |
| Msa0306210 | Msa0732840 | -0.828106 | 1.080947e-54 | -8.615850e-47 |
| Msa0317510 | Msa0732840 | 0.829188 | 5.921121e-55 | -8.615850e-47 |
| Msa0317730 | Msa0732840 | 0.807282 | 5.453680e-50 | -8.615850e-47 |
| Msa0317740 | Msa0732840 | 0.810780 | 9.724544e-51 | -8.615850e-47 |
| Msa0319170 | Msa0732840 | 0.807291 | 5.429502e-50 | -8.615850e-47 |
| Msa0338110 | Msa0732840 | 0.838463 | 2.832757e-57 | -8.615850e-47 |
| Msa0340450 | Msa0732840 | 0.825814 | 3.817819e-54 | -8.615850e-47 |
| Msa0344690 | Msa0732840 | -0.803193 | 3.918541e-49 | -8.615850e-47 |
| Msa0350840 | Msa0732840 | 0.818351 | 2.051668e-52 | -8.615850e-47 |
| Msa0483650 | Msa0732840 | 0.804150 | 2.480612e-49 | -8.615850e-47 |
| Msa0484780 | Msa0732840 | 0.837258 | 5.781271e-57 | -8.615850e-47 |
| Msa0485490 | Msa0732840 | 0.812027 | 5.212214e-51 | -8.615850e-47 |
| Msa0490730 | Msa0732840 | -0.806871 | 6.665014e-50 | -8.615850e-47 |
| Msa0512870 | Msa0732840 | 0.802883 | 4.540626e-49 | -8.615850e-47 |
| Msa0512900 | Msa0732840 | 0.808494 | 3.013708e-50 | -8.615850e-47 |
| Msa0516370 | Msa0732840 | 0.813235 | 2.836450e-51 | -8.615850e-47 |
| Msa0530650 | Msa0732840 | 0.803793 | 2.941600e-49 | -8.615850e-47 |
| Msa0536220 | Msa0732840 | 0.800229 | 1.589471e-48 | -8.615850e-47 |
| Msa0545150 | Msa0732840 | 0.814384 | 1.583564e-51 | -8.615850e-47 |
| Msa0555020 | Msa0732840 | 0.832047 | 1.180939e-55 | -8.615850e-47 |
| Msa0558690 | Msa0732840 | 0.822134 | 2.786946e-53 | -8.615850e-47 |
| Msa0567020 | Msa0732840 | 0.820730 | 5.878811e-53 | -8.615850e-47 |
| Msa0572480 | Msa0732840 | 0.842425 | 2.607225e-58 | -8.615850e-47 |
| Msa0587190 | Msa0732840 | 0.804525 | 2.071805e-49 | -8.615850e-47 |
| Msa0598880 | Msa0732840 | -0.823255 | 1.528721e-53 | -8.615850e-47 |
| Msa0599080 | Msa0732840 | 0.801342 | 9.421878e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732840 | MtrunA17_Chr5g0427761 | 92.903 | 465 | 21 | 2 | 1 | 465 | 1 | 453 | 0.0 | 875 |
| Msa0732840 | MtrunA17_Chr2g0281001 | 34.524 | 168 | 105 | 3 | 303 | 465 | 35 | 202 | 2.22e-21 | 92.0 |
| Msa0732840 | MtrunA17_Chr4g0060581 | 32.323 | 99 | 67 | 0 | 10 | 108 | 13 | 111 | 8.80e-16 | 75.1 |
| Msa0732840 | MtrunA17_Chr3g0097141 | 34.737 | 95 | 62 | 0 | 12 | 106 | 7 | 101 | 2.07e-14 | 70.9 |
| Msa0732840 | MtrunA17_Chr6g0480701 | 29.940 | 167 | 114 | 2 | 302 | 465 | 623 | 789 | 2.23e-14 | 75.9 |
| Msa0732840 | MtrunA17_Chr5g0416561 | 30.476 | 105 | 73 | 0 | 1 | 105 | 58 | 162 | 3.43e-12 | 66.2 |
| Msa0732840 | MtrunA17_Chr5g0443431 | 36.471 | 85 | 54 | 0 | 22 | 106 | 17 | 101 | 4.07e-12 | 64.3 |
| Msa0732840 | MtrunA17_Chr8g0386221 | 27.957 | 93 | 67 | 0 | 11 | 103 | 6 | 98 | 1.36e-11 | 61.2 |
| Msa0732840 | MtrunA17_Chr3g0132031 | 29.787 | 94 | 66 | 0 | 12 | 105 | 7 | 100 | 2.62e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732840 | AT1G74520.1 | 29.730 | 148 | 90 | 3 | 11 | 144 | 11 | 158 | 1.02e-16 | 78.2 |
| Msa0732840 | AT1G74520.2 | 29.730 | 148 | 90 | 3 | 11 | 144 | 11 | 158 | 1.02e-16 | 78.2 |
| Msa0732840 | AT1G69700.1 | 28.369 | 141 | 97 | 1 | 11 | 151 | 13 | 149 | 2.57e-16 | 77.4 |
| Msa0732840 | AT2G42820.1 | 31.683 | 101 | 69 | 0 | 10 | 110 | 5 | 105 | 2.32e-13 | 68.2 |
Find 93 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATATCTCAAACTTATT+TGG | 0.127608 | 5_1:-45497637 | Msa0732840:three_prime_UTR |
| TTTCCATTCACACCATATTA+TGG | 0.214195 | 5_1:+45498332 | None:intergenic |
| GATTCAGAATATTTGCAATT+TGG | 0.215007 | 5_1:+45498367 | None:intergenic |
| AGAGGCCTTGTTCTCTCTTT+AGG | 0.218594 | 5_1:-45498144 | Msa0732840:CDS |
| TTCACACAGGTTTCAGCTTT+TGG | 0.219860 | 5_1:+45498045 | None:intergenic |
| CTATTGTTAATACCTTATTT+TGG | 0.243172 | 5_1:-45499320 | Msa0732840:CDS |
| CTTGTTCTCTCTTTAGGTCT+TGG | 0.247801 | 5_1:-45498138 | Msa0732840:CDS |
| GTGGTCTGCTTCGTGATTAT+CGG | 0.253798 | 5_1:-45498242 | Msa0732840:CDS |
| TGGTGGAACTTTGGGCTATA+TGG | 0.256656 | 5_1:-45498167 | Msa0732840:CDS |
| TACTTTCTTGGTGGAACTTT+GGG | 0.281464 | 5_1:-45498175 | Msa0732840:CDS |
| ATGTCAACTTAACCACTAAA+TGG | 0.290537 | 5_1:+45497737 | None:intergenic |
| GTCTTGGGATAAAATCAATA+TGG | 0.303390 | 5_1:-45498122 | Msa0732840:CDS |
| TTCGAGACAAATGCGCAAAT+TGG | 0.310319 | 5_1:+45498213 | None:intergenic |
| TTGTTCTCTCTTTAGGTCTT+GGG | 0.332936 | 5_1:-45498137 | Msa0732840:CDS |
| AATAAAGAAACAGCTGGTTT+TGG | 0.354908 | 5_1:-45498264 | Msa0732840:CDS |
| ATGTTATAGCTTCCATTTAG+TGG | 0.362109 | 5_1:-45497749 | Msa0732840:three_prime_UTR |
| GTTGCAGATATGTTTCTATT+CGG | 0.367407 | 5_1:-45501049 | Msa0732840:intron |
| TTAATTAAACGCTACTGTAC+TGG | 0.372209 | 5_1:-45499272 | Msa0732840:CDS |
| AATTTGCAGTGTTATTTACT+TGG | 0.376792 | 5_1:-45500941 | Msa0732840:intron |
| TATTGCGCAGCACCAAAATA+AGG | 0.378729 | 5_1:+45499308 | None:intergenic |
| AAGCACAACTCCATTCCTTC+TGG | 0.379728 | 5_1:+45498562 | None:intergenic |
| CATATTATGGATCTAGAAAC+TGG | 0.383191 | 5_1:+45498345 | None:intergenic |
| CAAAATAAGGTATTAACAAT+AGG | 0.384113 | 5_1:+45499321 | None:intergenic |
| AATCACTCACCATCCTTTCC+TGG | 0.389151 | 5_1:-45501314 | Msa0732840:intron |
| ATACTTTCTTGGTGGAACTT+TGG | 0.389611 | 5_1:-45498176 | Msa0732840:CDS |
| TCCCCAAGGAGATACTTTCT+TGG | 0.395766 | 5_1:-45498187 | Msa0732840:CDS |
| AATGAGTTGTAATAATTGTC+TGG | 0.395962 | 5_1:+45499033 | None:intergenic |
| CAGTTTCTAGATCCATAATA+TGG | 0.399797 | 5_1:-45498344 | Msa0732840:CDS |
| CACCAAGAAAGTATCTCCTT+GGG | 0.423053 | 5_1:+45498185 | None:intergenic |
| ATAACATTAATTTCTACCTA+TGG | 0.426049 | 5_1:+45497765 | None:intergenic |
| TGGTCTGCTTCGTGATTATC+GGG | 0.429907 | 5_1:-45498241 | Msa0732840:CDS |
| GATCCATAATATGGTGTGAA+TGG | 0.430360 | 5_1:-45498335 | Msa0732840:CDS |
| AGTAGAACTAACACTCTGTT+TGG | 0.441976 | 5_1:+45501485 | None:intergenic |
| TAGCAAAAGTGTTGAAGAAT+CGG | 0.443544 | 5_1:-45499087 | Msa0732840:CDS |
| TAGCAAAAGTGTTGAAGAAT+CGG | 0.443544 | 5_1:-45499117 | Msa0732840:CDS |
| CACTTAGGGTCACATCTTCA+AGG | 0.453205 | 5_1:-45498510 | Msa0732840:CDS |
| AGCAGATCATCTTGCAAAGA+TGG | 0.464394 | 5_1:-45497950 | Msa0732840:CDS |
| AATAAGTTTGAGATATCATA+AGG | 0.465396 | 5_1:+45497640 | None:intergenic |
| AAAGGACAAAGCAAAGTAAT+CGG | 0.468833 | 5_1:+45501157 | None:intergenic |
| CATCAGGGGAGAGATGATCT+TGG | 0.473534 | 5_1:-45498636 | Msa0732840:intron |
| TGGAAACATACTTTCTGAAT+CGG | 0.481170 | 5_1:-45499177 | Msa0732840:CDS |
| CCACCAAGAAAGTATCTCCT+TGG | 0.481826 | 5_1:+45498184 | None:intergenic |
| AAAAGAAAGTCCAGAAGGAA+TGG | 0.482543 | 5_1:-45498572 | Msa0732840:CDS |
| CATACTTTCTGAATCGGATA+CGG | 0.483563 | 5_1:-45499171 | Msa0732840:CDS |
| CCAAGGAGATACTTTCTTGG+TGG | 0.484206 | 5_1:-45498184 | Msa0732840:CDS |
| CTTGCAAAGATGGCTGTTTG+TGG | 0.484608 | 5_1:-45497940 | Msa0732840:CDS |
| TTCGTTATTGCAGGCTCCCA+TGG | 0.484694 | 5_1:-45499373 | Msa0732840:intron |
| TTTGATTCTTTGCTGCGTAA+AGG | 0.486434 | 5_1:+45498416 | None:intergenic |
| TGAGTAAGTTTGATGAGTCT+CGG | 0.487445 | 5_1:-45498005 | Msa0732840:CDS |
| GGAAAGAAATAATGAGGTAA+AGG | 0.490784 | 5_1:+45497614 | None:intergenic |
| ACTGCAAGTGAAAATCACTT+AGG | 0.493129 | 5_1:-45498525 | Msa0732840:CDS |
| TTTCTTTACCATTAAGACTT+CGG | 0.502237 | 5_1:-45501459 | Msa0732840:five_prime_UTR |
| CTGCAAGTGAAAATCACTTA+GGG | 0.508443 | 5_1:-45498524 | Msa0732840:CDS |
| TCTGTAAATAAAGAAACAGC+TGG | 0.514986 | 5_1:-45498270 | Msa0732840:CDS |
| TCTTGGGATAAAATCAATAT+GGG | 0.519546 | 5_1:-45498121 | Msa0732840:CDS |
| TAATTAAACGCTACTGTACT+GGG | 0.522290 | 5_1:-45499271 | Msa0732840:CDS |
| GATTGTCTTCACAACACTCA+TGG | 0.524206 | 5_1:+45498086 | None:intergenic |
| TACCATCTGAACGGAGTTGG+TGG | 0.537300 | 5_1:-45497814 | Msa0732840:three_prime_UTR |
| ATATGTTTCTATTCGGACGT+TGG | 0.539419 | 5_1:-45501042 | Msa0732840:CDS |
| ATGAGTTGTAATAATTGTCT+GGG | 0.545208 | 5_1:+45499034 | None:intergenic |
| AAGTGTTAGTATACCAGGAA+AGG | 0.552633 | 5_1:+45501301 | None:intergenic |
| CTCCACCAACTCCGTTCAGA+TGG | 0.552749 | 5_1:+45497812 | None:intergenic |
| ATACTTTCTGAATCGGATAC+GGG | 0.559997 | 5_1:-45499170 | Msa0732840:CDS |
| AGTTACCATCTGAACGGAGT+TGG | 0.577250 | 5_1:-45497817 | Msa0732840:three_prime_UTR |
| TTCTTTATTTACAGAACCGT+CGG | 0.577442 | 5_1:+45498278 | None:intergenic |
| TTTACGCAGCAAAGAATCAA+AGG | 0.578183 | 5_1:-45498414 | Msa0732840:CDS |
| AGTCTCGGATTTCTCACTCA+TGG | 0.579409 | 5_1:-45497990 | Msa0732840:CDS |
| GGCTGTTTGTGGAAATGATG+TGG | 0.583486 | 5_1:-45497929 | Msa0732840:CDS |
| GTTAGTATACCAGGAAAGGA+TGG | 0.586370 | 5_1:+45501305 | None:intergenic |
| AGGGAAGAAACACAAGGCTA+AGG | 0.587634 | 5_1:-45498490 | Msa0732840:CDS |
| TGCGTAAAGGATAGAACATA+CGG | 0.588069 | 5_1:+45498429 | None:intergenic |
| GAGGAACAAAATATCTAAGA+CGG | 0.590469 | 5_1:-45497849 | Msa0732840:CDS |
| AATCAACTACAGAAAACCAT+AGG | 0.600606 | 5_1:-45497781 | Msa0732840:three_prime_UTR |
| CTTTCACATGAGACCACCAT+GGG | 0.604216 | 5_1:+45499357 | None:intergenic |
| CAAGACCTAAAGAGAGAACA+AGG | 0.605269 | 5_1:+45498139 | None:intergenic |
| CGTCTTGAATGATATTGCAA+AGG | 0.607459 | 5_1:+45497878 | None:intergenic |
| ACTTAGGGTCACATCTTCAA+GGG | 0.607489 | 5_1:-45498509 | Msa0732840:CDS |
| GGAACATGTGTGCATGGACG+AGG | 0.614286 | 5_1:-45499250 | Msa0732840:CDS |
| GCAGCAAAGAATCAAAGGAA+TGG | 0.619825 | 5_1:-45498409 | Msa0732840:CDS |
| GAACTTTGGGCTATATGGAG+AGG | 0.625001 | 5_1:-45498162 | Msa0732840:CDS |
| GTTTGCAGTTACCATCTGAA+CGG | 0.645168 | 5_1:-45497823 | Msa0732840:three_prime_UTR |
| GTACTGGGAACATGTGTGCA+TGG | 0.648375 | 5_1:-45499256 | Msa0732840:CDS |
| GTTATTGCAGGCTCCCATGG+TGG | 0.653020 | 5_1:-45499370 | Msa0732840:intron |
| TTTGTCTCGAAAGCTCCCCA+AGG | 0.662704 | 5_1:-45498201 | Msa0732840:CDS |
| GGACAAAGCAAAGTAATCGG+AGG | 0.679495 | 5_1:+45501160 | None:intergenic |
| ACCAAGAAAGTATCTCCTTG+GGG | 0.682738 | 5_1:+45498186 | None:intergenic |
| ATCATTCAAGACGATGCCAG+AGG | 0.688719 | 5_1:-45497868 | Msa0732840:CDS |
| GCTTTCACATGAGACCACCA+TGG | 0.697373 | 5_1:+45499356 | None:intergenic |
| TGGACAAAACTCAATACCGA+CGG | 0.699612 | 5_1:-45498294 | Msa0732840:CDS |
| GATTGTGACAAGACAAACAG+CGG | 0.720919 | 5_1:-45498609 | Msa0732840:CDS |
| GTGGTCTCATGTGAAAGCTG+TGG | 0.721440 | 5_1:-45499351 | Msa0732840:CDS |
| TCTTCAAGGGAAGAAACACA+AGG | 0.746803 | 5_1:-45498496 | Msa0732840:CDS |
| GGTCTGCTTCGTGATTATCG+GGG | 0.768767 | 5_1:-45498240 | Msa0732840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAAAAAAAATGGATT+CGG | - | chr5_1:45497784-45497803 | Msa0732840:three_prime_UTR | 10.0% |
| !! | ATAAATAAAATTACTTACAA+AGG | + | chr5_1:45498015-45498034 | None:intergenic | 10.0% |
| !! | ATATAAAAAAGCAACATTAT+AGG | + | chr5_1:45497913-45497932 | None:intergenic | 15.0% |
| !!! | CTATTTTGTTAGTAATTTTA+TGG | - | chr5_1:45498333-45498352 | Msa0732840:CDS | 15.0% |
| !! | TAAAATGATAAATGTGTATT+TGG | + | chr5_1:45500293-45500312 | None:intergenic | 15.0% |
| !!! | AAAAGAGTAAACAAACATTT+TGG | + | chr5_1:45498794-45498813 | None:intergenic | 20.0% |
| !! | TCAACTATAACAATGAAATT+TGG | - | chr5_1:45498880-45498899 | Msa0732840:intron | 20.0% |
| !!! | ATTATTGAAATTCAAGTTTG+AGG | - | chr5_1:45498911-45498930 | Msa0732840:intron | 20.0% |
| !!! | TTATTGAAATTCAAGTTTGA+GGG | - | chr5_1:45498912-45498931 | Msa0732840:intron | 20.0% |
| !! | AATAAAGATAATTGTTGTGT+TGG | + | chr5_1:45499094-45499113 | None:intergenic | 20.0% |
| !! | TACTTGGTTGAATTTATTAA+TGG | - | chr5_1:45499535-45499554 | Msa0732840:intron | 20.0% |
| !!! | AGAAGGAACAAAAATAATTT+TGG | - | chr5_1:45499614-45499633 | Msa0732840:intron | 20.0% |
| !!! | GAAGGAACAAAAATAATTTT+GGG | - | chr5_1:45499615-45499634 | Msa0732840:intron | 20.0% |
| !!! | CAAAATAAGGTATTAACAAT+AGG | + | chr5_1:45499833-45499852 | None:intergenic | 20.0% |
| !!! | CTATTGTTAATACCTTATTT+TGG | - | chr5_1:45499831-45499850 | Msa0732840:intron | 20.0% |
| !! | AAGCATTAAAATCATCATAT+GGG | + | chr5_1:45500222-45500241 | None:intergenic | 20.0% |
| !!! | AAAGCATTAAAATCATCATA+TGG | + | chr5_1:45500223-45500242 | None:intergenic | 20.0% |
| !! | ATAACATTAATTTCTACCTA+TGG | + | chr5_1:45501389-45501408 | None:intergenic | 20.0% |
| !!! | AATAAGTTTGAGATATCATA+AGG | + | chr5_1:45501514-45501533 | None:intergenic | 20.0% |
| !! | TATGATATCTCAAACTTATT+TGG | - | chr5_1:45501514-45501533 | Msa0732840:five_prime_UTR | 20.0% |
| ! | TTTCTTTACCATTAAGACTT+CGG | - | chr5_1:45497692-45497711 | Msa0732840:three_prime_UTR | 25.0% |
| !! | TAAAAAAAATGGATTCGGAA+TGG | - | chr5_1:45497789-45497808 | Msa0732840:three_prime_UTR | 25.0% |
| !! | AAAAAAAATGGATTCGGAAT+GGG | - | chr5_1:45497790-45497809 | Msa0732840:three_prime_UTR | 25.0% |
| !!! | TTTTTATTTTTGTTGCATGC+AGG | - | chr5_1:45497968-45497987 | Msa0732840:CDS | 25.0% |
| !!! | AATTTGCAGTGTTATTTACT+TGG | - | chr5_1:45498210-45498229 | Msa0732840:CDS | 25.0% |
| ! | ATTATGTTCCGATTATTAGT+AGG | - | chr5_1:45498283-45498302 | Msa0732840:CDS | 25.0% |
| ! | TTATGTTCCGATTATTAGTA+GGG | - | chr5_1:45498284-45498303 | Msa0732840:CDS | 25.0% |
| !! | TTGTTTTCCCTACTAATAAT+CGG | + | chr5_1:45498294-45498313 | None:intergenic | 25.0% |
| !! | AGGTTTAGAGTACTTATAAT+GGG | + | chr5_1:45498485-45498504 | None:intergenic | 25.0% |
| !! | ATCTGAGTAAACAAACATTT+TGG | - | chr5_1:45498525-45498544 | Msa0732840:CDS | 25.0% |
| !!! | CAAATGTATGTTTTGTTTGT+CGG | - | chr5_1:45498668-45498687 | Msa0732840:intron | 25.0% |
| ! | ATCTTCTCTTTGTAATTTCA+TGG | + | chr5_1:45498700-45498719 | None:intergenic | 25.0% |
| !! | TTACTCTTTTAACATCGAAT+TGG | - | chr5_1:45498804-45498823 | Msa0732840:intron | 25.0% |
| !! | TACTCTTTTAACATCGAATT+GGG | - | chr5_1:45498805-45498824 | Msa0732840:intron | 25.0% |
| ! | GATGTTAAAAAGTGATATCA+AGG | - | chr5_1:45498828-45498847 | Msa0732840:intron | 25.0% |
| !! | TATTGAAATTCAAGTTTGAG+GGG | - | chr5_1:45498913-45498932 | Msa0732840:intron | 25.0% |
| ! | ACTAAGAATAAGCAAAATAG+AGG | - | chr5_1:45498950-45498969 | Msa0732840:intron | 25.0% |
| !! | GCAATAATGTCTTAAAGTTT+TGG | - | chr5_1:45499001-45499020 | Msa0732840:intron | 25.0% |
| !!! | TAATGTCTTAAAGTTTTGGA+TGG | - | chr5_1:45499005-45499024 | Msa0732840:CDS | 25.0% |
| !!! | AGTTTTAGTTATTAGCCTAT+TGG | - | chr5_1:45499058-45499077 | Msa0732840:CDS | 25.0% |
| !!! | CATTTTAAGTAGCCATAAAA+CGG | + | chr5_1:45499385-45499404 | None:intergenic | 25.0% |
| ! | ATACTAAATTATGCAATGTC+AGG | + | chr5_1:45499452-45499471 | None:intergenic | 25.0% |
| !!! | TTATAGTCTATTTCTGTACT+TGG | - | chr5_1:45499519-45499538 | Msa0732840:intron | 25.0% |
| ! | ATGGAAATAAAGTTAAGAGT+CGG | - | chr5_1:45499554-45499573 | Msa0732840:intron | 25.0% |
| !!! | AAAAATAATTTTGGGTCAAG+AGG | - | chr5_1:45499623-45499642 | Msa0732840:intron | 25.0% |
| !!! | CAGAAAAGCATTTTTAGAAT+CGG | - | chr5_1:45500004-45500023 | Msa0732840:intron | 25.0% |
| ! | ATGAGTTGTAATAATTGTCT+GGG | + | chr5_1:45500120-45500139 | None:intergenic | 25.0% |
| ! | AATGAGTTGTAATAATTGTC+TGG | + | chr5_1:45500121-45500140 | None:intergenic | 25.0% |
| !! | GAAGAAACTTTTAGTATATC+AGG | - | chr5_1:45500148-45500167 | Msa0732840:intron | 25.0% |
| !! | ACTTTTAGTATATCAGGTAT+TGG | - | chr5_1:45500154-45500173 | Msa0732840:intron | 25.0% |
| ! | ATTCGTATCACAAATTTACA+TGG | - | chr5_1:45500352-45500371 | Msa0732840:intron | 25.0% |
| ! | ACAAATTTACATGGATGTTA+TGG | - | chr5_1:45500361-45500380 | Msa0732840:intron | 25.0% |
| ! | GATTCAGAATATTTGCAATT+TGG | + | chr5_1:45500787-45500806 | None:intergenic | 25.0% |
| ! | TCTTGGGATAAAATCAATAT+GGG | - | chr5_1:45501030-45501049 | Msa0732840:CDS | 25.0% |
| AAAGGACAAAGCAAAGTAAT+CGG | + | chr5_1:45497997-45498016 | None:intergenic | 30.0% | |
| ! | GTTGCAGATATGTTTCTATT+CGG | - | chr5_1:45498102-45498121 | Msa0732840:CDS | 30.0% |
| !!! | ATCAACGATGTCTTGTTTTT+TGG | - | chr5_1:45498153-45498172 | Msa0732840:CDS | 30.0% |
| !!! | TCAACGATGTCTTGTTTTTT+GGG | - | chr5_1:45498154-45498173 | Msa0732840:CDS | 30.0% |
| ! | GTCTCTTTTATCAGTCATTT+CGG | + | chr5_1:45498391-45498410 | None:intergenic | 30.0% |
| ! | GAGGTTTAGAGTACTTATAA+TGG | + | chr5_1:45498486-45498505 | None:intergenic | 30.0% |
| ! | ACCTCTCCAATGTTAAATTT+TGG | - | chr5_1:45498501-45498520 | Msa0732840:CDS | 30.0% |
| CAGATGCCAAAATTTAACAT+TGG | + | chr5_1:45498510-45498529 | None:intergenic | 30.0% | |
| CTAACAAAAGACACATTCTT+GGG | + | chr5_1:45498635-45498654 | None:intergenic | 30.0% | |
| ACTAACAAAAGACACATTCT+TGG | + | chr5_1:45498636-45498655 | None:intergenic | 30.0% | |
| ! | ACTCTTTTAACATCGAATTG+GGG | - | chr5_1:45498806-45498825 | Msa0732840:intron | 30.0% |
| GTCTAGAAAAACATTAAGGT+GGG | + | chr5_1:45499256-45499275 | None:intergenic | 30.0% | |
| TGTCTAGAAAAACATTAAGG+TGG | + | chr5_1:45499257-45499276 | None:intergenic | 30.0% | |
| TGGTGTCTAGAAAAACATTA+AGG | + | chr5_1:45499260-45499279 | None:intergenic | 30.0% | |
| ! | CGTTTTATGGCTACTTAAAA+TGG | - | chr5_1:45499383-45499402 | Msa0732840:intron | 30.0% |
| TTTATGGCTACTTAAAATGG+CGG | - | chr5_1:45499386-45499405 | Msa0732840:intron | 30.0% | |
| ! | CATTTTGAATTCGTTATTGC+AGG | - | chr5_1:45499769-45499788 | Msa0732840:intron | 30.0% |
| TTAATTAAACGCTACTGTAC+TGG | - | chr5_1:45499879-45499898 | Msa0732840:intron | 30.0% | |
| TAATTAAACGCTACTGTACT+GGG | - | chr5_1:45499880-45499899 | Msa0732840:intron | 30.0% | |
| ! | TGTGATTTTCAGATTGAAGA+TGG | + | chr5_1:45499934-45499953 | None:intergenic | 30.0% |
| TGGAAACATACTTTCTGAAT+CGG | - | chr5_1:45499974-45499993 | Msa0732840:intron | 30.0% | |
| !!! | AAAGCATTTTTAGAATCGGA+TGG | - | chr5_1:45500008-45500027 | Msa0732840:intron | 30.0% |
| !! | TAGCAAAAGTGTTGAAGAAT+CGG | - | chr5_1:45500034-45500053 | Msa0732840:intron | 30.0% |
| !! | TAGCAAAAGTGTTGAAGAAT+CGG | - | chr5_1:45500034-45500053 | Msa0732840:intron | 30.0% |
| ! | AAATGTGTATTTGGAGTTGA+TGG | + | chr5_1:45500284-45500303 | None:intergenic | 30.0% |
| ACACGATGATTAGCATTAAT+TGG | + | chr5_1:45500408-45500427 | None:intergenic | 30.0% | |
| TAAGAAAGTTGTTTGCATCA+GGG | - | chr5_1:45500500-45500519 | Msa0732840:intron | 30.0% | |
| AAGTAAAAAGAAAGTCCAGA+AGG | - | chr5_1:45500574-45500593 | Msa0732840:intron | 30.0% | |
| CATATTATGGATCTAGAAAC+TGG | + | chr5_1:45500809-45500828 | None:intergenic | 30.0% | |
| ! | CAGTTTCTAGATCCATAATA+TGG | - | chr5_1:45500807-45500826 | Msa0732840:intron | 30.0% |
| TTTCCATTCACACCATATTA+TGG | + | chr5_1:45500822-45500841 | None:intergenic | 30.0% | |
| ! | TTCTTTATTTACAGAACCGT+CGG | + | chr5_1:45500876-45500895 | None:intergenic | 30.0% |
| TCTGTAAATAAAGAAACAGC+TGG | - | chr5_1:45500881-45500900 | Msa0732840:intron | 30.0% | |
| !! | AATAAAGAAACAGCTGGTTT+TGG | - | chr5_1:45500887-45500906 | Msa0732840:intron | 30.0% |
| GTCTTGGGATAAAATCAATA+TGG | - | chr5_1:45501029-45501048 | Msa0732840:CDS | 30.0% | |
| AAACCTGTGTGAAAAAAATC+TGG | - | chr5_1:45501116-45501135 | Msa0732840:intron | 30.0% | |
| !!! | TTTCCAGATTTTTTTCACAC+AGG | + | chr5_1:45501122-45501141 | None:intergenic | 30.0% |
| ! | TCTTAGATATTTTGTTCCTC+TGG | + | chr5_1:45501302-45501321 | None:intergenic | 30.0% |
| GAGGAACAAAATATCTAAGA+CGG | - | chr5_1:45501302-45501321 | Msa0732840:intron | 30.0% | |
| AATCAACTACAGAAAACCAT+AGG | - | chr5_1:45501370-45501389 | Msa0732840:exon | 30.0% | |
| ATGTTATAGCTTCCATTTAG+TGG | - | chr5_1:45501402-45501421 | Msa0732840:intron | 30.0% | |
| ATGTCAACTTAACCACTAAA+TGG | + | chr5_1:45501417-45501436 | None:intergenic | 30.0% | |
| AGTAGAACTAACACTCTGTT+TGG | + | chr5_1:45497669-45497688 | None:intergenic | 35.0% | |
| ! | TTTTCACTCCGAAGTCTTAA+TGG | + | chr5_1:45497703-45497722 | None:intergenic | 35.0% |
| AAGTGTTAGTATACCAGGAA+AGG | + | chr5_1:45497853-45497872 | None:intergenic | 35.0% | |
| !! | GAAAGAAGTGTTAGTATACC+AGG | + | chr5_1:45497858-45497877 | None:intergenic | 35.0% |
| ! | ATATGTTTCTATTCGGACGT+TGG | - | chr5_1:45498109-45498128 | Msa0732840:CDS | 35.0% |
| ! | AGTAGGGAAAACAACCATTT+TGG | - | chr5_1:45498300-45498319 | Msa0732840:CDS | 35.0% |
| ACTGATAAAAGAGACACATG+TGG | - | chr5_1:45498396-45498415 | Msa0732840:CDS | 35.0% | |
| TAATGGGAAAACCAACACTT+TGG | + | chr5_1:45498469-45498488 | None:intergenic | 35.0% | |
| GCCAAAATTTAACATTGGAG+AGG | + | chr5_1:45498505-45498524 | None:intergenic | 35.0% | |
| TACAAAGAGAAGATACACTG+AGG | - | chr5_1:45498706-45498725 | Msa0732840:intron | 35.0% | |
| ACAAAGAGAAGATACACTGA+GGG | - | chr5_1:45498707-45498726 | Msa0732840:intron | 35.0% | |
| ! | GACATTTTCTCTCACATTTG+TGG | - | chr5_1:45498767-45498786 | Msa0732840:intron | 35.0% |
| ! | GATAATTGTTGTGTTGGCAA+GGG | + | chr5_1:45499088-45499107 | None:intergenic | 35.0% |
| ! | AGATAATTGTTGTGTTGGCA+AGG | + | chr5_1:45499089-45499108 | None:intergenic | 35.0% |
| TAGCATCATTTCATTGACCA+AGG | + | chr5_1:45499181-45499200 | None:intergenic | 35.0% | |
| ! | TGACCAGTGCTGTTAAATAT+TGG | - | chr5_1:45499285-45499304 | Msa0732840:CDS | 35.0% |
| TGACCAATATTTAACAGCAC+TGG | + | chr5_1:45499291-45499310 | None:intergenic | 35.0% | |
| CTGTTAAATATTGGTCACCA+TGG | - | chr5_1:45499294-45499313 | Msa0732840:CDS | 35.0% | |
| TTAAATATTGGTCACCATGG+TGG | - | chr5_1:45499297-45499316 | Msa0732840:CDS | 35.0% | |
| TATAGCATTCACATGCATGT+TGG | - | chr5_1:45499469-45499488 | Msa0732840:intron | 35.0% | |
| ATGCTCAAAAGCAATACCAA+AGG | + | chr5_1:45499498-45499517 | None:intergenic | 35.0% | |
| ATAAAGTTAAGAGTCGGAGT+AGG | - | chr5_1:45499560-45499579 | Msa0732840:intron | 35.0% | |
| GAAACTAGACACAAATCAGA+AGG | - | chr5_1:45499597-45499616 | Msa0732840:intron | 35.0% | |
| AGCTAGGTTGTGAAAGAAAA+AGG | - | chr5_1:45499646-45499665 | Msa0732840:intron | 35.0% | |
| CATACTTTCTGAATCGGATA+CGG | - | chr5_1:45499980-45499999 | Msa0732840:intron | 35.0% | |
| ATACTTTCTGAATCGGATAC+GGG | - | chr5_1:45499981-45500000 | Msa0732840:intron | 35.0% | |
| TATGGTAATCACCACATACA+AGG | - | chr5_1:45500379-45500398 | Msa0732840:intron | 35.0% | |
| ! | TTAATTGGTCTCCTTGTATG+TGG | + | chr5_1:45500393-45500412 | None:intergenic | 35.0% |
| AGAATATACACCACAAGACT+TGG | - | chr5_1:45500433-45500452 | Msa0732840:intron | 35.0% | |
| CTAAGAAAGTTGTTTGCATC+AGG | - | chr5_1:45500499-45500518 | Msa0732840:intron | 35.0% | |
| AAGAAAGTTGTTTGCATCAG+GGG | - | chr5_1:45500501-45500520 | Msa0732840:intron | 35.0% | |
| AAAAGAAAGTCCAGAAGGAA+TGG | - | chr5_1:45500579-45500598 | Msa0732840:intron | 35.0% | |
| ACTGCAAGTGAAAATCACTT+AGG | - | chr5_1:45500626-45500645 | Msa0732840:intron | 35.0% | |
| CTGCAAGTGAAAATCACTTA+GGG | - | chr5_1:45500627-45500646 | Msa0732840:intron | 35.0% | |
| AAGGAAAAAGAACTTCGAGT+TGG | - | chr5_1:45500680-45500699 | Msa0732840:intron | 35.0% | |
| ! | AGGAAAAAGAACTTCGAGTT+GGG | - | chr5_1:45500681-45500700 | Msa0732840:intron | 35.0% |
| TGCGTAAAGGATAGAACATA+CGG | + | chr5_1:45500725-45500744 | None:intergenic | 35.0% | |
| TTTGATTCTTTGCTGCGTAA+AGG | + | chr5_1:45500738-45500757 | None:intergenic | 35.0% | |
| TTTACGCAGCAAAGAATCAA+AGG | - | chr5_1:45500737-45500756 | Msa0732840:intron | 35.0% | |
| GATCCATAATATGGTGTGAA+TGG | - | chr5_1:45500816-45500835 | Msa0732840:intron | 35.0% | |
| ATACTTTCTTGGTGGAACTT+TGG | - | chr5_1:45500975-45500994 | Msa0732840:CDS | 35.0% | |
| TACTTTCTTGGTGGAACTTT+GGG | - | chr5_1:45500976-45500995 | Msa0732840:CDS | 35.0% | |
| TTGTTCTCTCTTTAGGTCTT+GGG | - | chr5_1:45501014-45501033 | Msa0732840:CDS | 35.0% | |
| TGAGTAAGTTTGATGAGTCT+CGG | - | chr5_1:45501146-45501165 | Msa0732840:intron | 35.0% | |
| CGTCTTGAATGATATTGCAA+AGG | + | chr5_1:45501276-45501295 | None:intergenic | 35.0% | |
| GTTAGTATACCAGGAAAGGA+TGG | + | chr5_1:45497849-45497868 | None:intergenic | 40.0% | |
| !! | GGGAAAACAACCATTTTGGT+CGG | - | chr5_1:45498304-45498323 | Msa0732840:CDS | 40.0% |
| GACAACGAGTTACACTTTCA+AGG | - | chr5_1:45498442-45498461 | Msa0732840:CDS | 40.0% | |
| ACTTTCAAGGACCAAAGTGT+TGG | - | chr5_1:45498455-45498474 | Msa0732840:CDS | 40.0% | |
| ! | GTGATAACGAGACACATTCA+AGG | + | chr5_1:45498552-45498571 | None:intergenic | 40.0% |
| !!! | GTATGTTTTGTTTGTCGGTC+TGG | - | chr5_1:45498673-45498692 | Msa0732840:intron | 40.0% |
| GTAGCTTCTTCATTGCTTTG+AGG | - | chr5_1:45499145-45499164 | Msa0732840:CDS | 40.0% | |
| ! | TTTGAGGTTGACTACTACCT+TGG | - | chr5_1:45499161-45499180 | Msa0732840:CDS | 40.0% |
| CATCCTTCACAAATTGGCAA+TGG | + | chr5_1:45499351-45499370 | None:intergenic | 40.0% | |
| CATTGCCAATTTGTGAAGGA+TGG | - | chr5_1:45499349-45499368 | Msa0732840:CDS | 40.0% | |
| TAAGTAGCCATAAAACGGCA+TGG | + | chr5_1:45499380-45499399 | None:intergenic | 40.0% | |
| TTACTTTCTGCCATCCGAAA+TGG | - | chr5_1:45499415-45499434 | Msa0732840:intron | 40.0% | |
| AGGAGCAGTGTTATCCATTT+CGG | + | chr5_1:45499432-45499451 | None:intergenic | 40.0% | |
| CTCAGAACAATCATCATCAC+TGG | - | chr5_1:45499697-45499716 | Msa0732840:intron | 40.0% | |
| TATTGCGCAGCACCAAAATA+AGG | + | chr5_1:45499846-45499865 | None:intergenic | 40.0% | |
| ! | CACACATTTTGAATTGAGCG+AGG | - | chr5_1:45499950-45499969 | Msa0732840:intron | 40.0% |
| ! | CATTTTGAATTGAGCGAGGA+TGG | - | chr5_1:45499954-45499973 | Msa0732840:intron | 40.0% |
| AGCGAACGATGTATGATAGT+AGG | - | chr5_1:45500323-45500342 | Msa0732840:intron | 40.0% | |
| GATTGTGACAAGACAAACAG+CGG | - | chr5_1:45500542-45500561 | Msa0732840:intron | 40.0% | |
| ACTTAGGGTCACATCTTCAA+GGG | - | chr5_1:45500642-45500661 | Msa0732840:intron | 40.0% | |
| TCTTCAAGGGAAGAAACACA+AGG | - | chr5_1:45500655-45500674 | Msa0732840:intron | 40.0% | |
| GCAGCAAAGAATCAAAGGAA+TGG | - | chr5_1:45500742-45500761 | Msa0732840:intron | 40.0% | |
| ATGGTGTGAATGGAAAAAGC+CGG | - | chr5_1:45500826-45500845 | Msa0732840:intron | 40.0% | |
| GAATGGAAAAAGCCGGAATT+CGG | - | chr5_1:45500833-45500852 | Msa0732840:intron | 40.0% | |
| !! | AGTTTTGTCCATCCGAATTC+CGG | + | chr5_1:45500848-45500867 | None:intergenic | 40.0% |
| TGGACAAAACTCAATACCGA+CGG | - | chr5_1:45500857-45500876 | Msa0732840:intron | 40.0% | |
| !!! | AAAGAAACAGCTGGTTTTGG+TGG | - | chr5_1:45500890-45500909 | Msa0732840:intron | 40.0% |
| TTCGAGACAAATGCGCAAAT+TGG | + | chr5_1:45500941-45500960 | None:intergenic | 40.0% | |
| !! | ACCAAGAAAGTATCTCCTTG+GGG | + | chr5_1:45500968-45500987 | None:intergenic | 40.0% |
| !! | CACCAAGAAAGTATCTCCTT+GGG | + | chr5_1:45500969-45500988 | None:intergenic | 40.0% |
| CAAGACCTAAAGAGAGAACA+AGG | + | chr5_1:45501015-45501034 | None:intergenic | 40.0% | |
| CTTGTTCTCTCTTTAGGTCT+TGG | - | chr5_1:45501013-45501032 | Msa0732840:CDS | 40.0% | |
| GATTGTCTTCACAACACTCA+TGG | + | chr5_1:45501068-45501087 | None:intergenic | 40.0% | |
| ! | TTCACACAGGTTTCAGCTTT+TGG | + | chr5_1:45501109-45501128 | None:intergenic | 40.0% |
| AGCAGATCATCTTGCAAAGA+TGG | - | chr5_1:45501201-45501220 | Msa0732840:intron | 40.0% | |
| !! | GTGGAAATGATGTGGTTTTG+TGG | - | chr5_1:45501230-45501249 | Msa0732840:intron | 40.0% |
| AGGCTATGTGAAAAATCAGC+TGG | + | chr5_1:45501256-45501275 | None:intergenic | 40.0% | |
| GTTTGCAGTTACCATCTGAA+CGG | - | chr5_1:45501328-45501347 | Msa0732840:CDS | 40.0% | |
| AATCACTCACCATCCTTTCC+TGG | - | chr5_1:45497837-45497856 | Msa0732840:exon | 45.0% | |
| GGACAAAGCAAAGTAATCGG+AGG | + | chr5_1:45497994-45498013 | None:intergenic | 45.0% | |
| !! | TAACAGCACTGGTCAAGACT+TGG | + | chr5_1:45499280-45499299 | None:intergenic | 45.0% |
| CCTTCACAAATTGGCAATGG+CGG | + | chr5_1:45499348-45499367 | None:intergenic | 45.0% | |
| TGCCAATTTGTGAAGGATGG+TGG | - | chr5_1:45499352-45499371 | Msa0732840:CDS | 45.0% | |
| GCAGTGTTATCCATTTCGGA+TGG | + | chr5_1:45499428-45499447 | None:intergenic | 45.0% | |
| !! | ACATGCATGTTGGCTTCCTT+TGG | - | chr5_1:45499479-45499498 | Msa0732840:intron | 45.0% |
| !! | ATTTTGGGTCAAGAGGAGCT+AGG | - | chr5_1:45499630-45499649 | Msa0732840:intron | 45.0% |
| CTTTCACATGAGACCACCAT+GGG | + | chr5_1:45499797-45499816 | None:intergenic | 45.0% | |
| AAGCACAACTCCATTCCTTC+TGG | + | chr5_1:45500592-45500611 | None:intergenic | 45.0% | |
| CACTTAGGGTCACATCTTCA+AGG | - | chr5_1:45500641-45500660 | Msa0732840:intron | 45.0% | |
| AGGGAAGAAACACAAGGCTA+AGG | - | chr5_1:45500661-45500680 | Msa0732840:intron | 45.0% | |
| GTGGTCTGCTTCGTGATTAT+CGG | - | chr5_1:45500909-45500928 | Msa0732840:intron | 45.0% | |
| TGGTCTGCTTCGTGATTATC+GGG | - | chr5_1:45500910-45500929 | Msa0732840:intron | 45.0% | |
| TCCCCAAGGAGATACTTTCT+TGG | - | chr5_1:45500964-45500983 | Msa0732840:CDS | 45.0% | |
| !! | CCACCAAGAAAGTATCTCCT+TGG | + | chr5_1:45500970-45500989 | None:intergenic | 45.0% |
| CCAAGGAGATACTTTCTTGG+TGG | - | chr5_1:45500967-45500986 | Msa0732840:CDS | 45.0% | |
| TGGTGGAACTTTGGGCTATA+TGG | - | chr5_1:45500984-45501003 | Msa0732840:CDS | 45.0% | |
| GAACTTTGGGCTATATGGAG+AGG | - | chr5_1:45500989-45501008 | Msa0732840:CDS | 45.0% | |
| !! | AGAGGCCTTGTTCTCTCTTT+AGG | - | chr5_1:45501007-45501026 | Msa0732840:CDS | 45.0% |
| AGTCTCGGATTTCTCACTCA+TGG | - | chr5_1:45501161-45501180 | Msa0732840:CDS | 45.0% | |
| CTTGCAAAGATGGCTGTTTG+TGG | - | chr5_1:45501211-45501230 | Msa0732840:intron | 45.0% | |
| GGCTGTTTGTGGAAATGATG+TGG | - | chr5_1:45501222-45501241 | Msa0732840:intron | 45.0% | |
| ATCATTCAAGACGATGCCAG+AGG | - | chr5_1:45501283-45501302 | Msa0732840:intron | 45.0% | |
| AGTTACCATCTGAACGGAGT+TGG | - | chr5_1:45501334-45501353 | Msa0732840:CDS | 45.0% | |
| !! | AAATACAAAATTAAAAAAAA+TGG | - | chr5_1:45497778-45497797 | Msa0732840:three_prime_UTR | 5.0% |
| !! | ATAGACAGCGCCGACCAAAA+TGG | + | chr5_1:45498317-45498336 | None:intergenic | 50.0% |
| GGAGATGTAGTGTCGTGTTG+TGG | - | chr5_1:45499026-45499045 | Msa0732840:CDS | 50.0% | |
| AGTGTCGTGTTGTGGTCTCT+TGG | - | chr5_1:45499034-45499053 | Msa0732840:CDS | 50.0% | |
| !! | TTGGTCACCATGGTGGATTG+CGG | - | chr5_1:45499304-45499323 | Msa0732840:CDS | 50.0% |
| CCGCCATTGCCAATTTGTGA+AGG | - | chr5_1:45499345-45499364 | Msa0732840:CDS | 50.0% | |
| CGCCACCATCCTTCACAAAT+TGG | + | chr5_1:45499357-45499376 | None:intergenic | 50.0% | |
| TTCGTTATTGCAGGCTCCCA+TGG | - | chr5_1:45499778-45499797 | Msa0732840:intron | 50.0% | |
| GCTTTCACATGAGACCACCA+TGG | + | chr5_1:45499798-45499817 | None:intergenic | 50.0% | |
| GTGGTCTCATGTGAAAGCTG+TGG | - | chr5_1:45499800-45499819 | Msa0732840:intron | 50.0% | |
| GTACTGGGAACATGTGTGCA+TGG | - | chr5_1:45499895-45499914 | Msa0732840:intron | 50.0% | |
| GCATCTCTCACCAAGTCTTG+TGG | + | chr5_1:45500446-45500465 | None:intergenic | 50.0% | |
| CATCAGGGGAGAGATGATCT+TGG | - | chr5_1:45500515-45500534 | Msa0732840:intron | 50.0% | |
| GGAAAAAGCCGGAATTCGGA+TGG | - | chr5_1:45500837-45500856 | Msa0732840:intron | 50.0% | |
| GGTCTGCTTCGTGATTATCG+GGG | - | chr5_1:45500911-45500930 | Msa0732840:intron | 50.0% | |
| TTTGTCTCGAAAGCTCCCCA+AGG | - | chr5_1:45500950-45500969 | Msa0732840:CDS | 50.0% | |
| TACCATCTGAACGGAGTTGG+TGG | - | chr5_1:45501337-45501356 | Msa0732840:CDS | 50.0% | |
| GTTATTGCAGGCTCCCATGG+TGG | - | chr5_1:45499781-45499800 | Msa0732840:intron | 55.0% | |
| GGAACATGTGTGCATGGACG+AGG | - | chr5_1:45499901-45499920 | Msa0732840:intron | 55.0% | |
| CTCCACCAACTCCGTTCAGA+TGG | + | chr5_1:45501342-45501361 | None:intergenic | 55.0% | |
| ! | GTTGGCAAGGGCGCACCAAT+AGG | + | chr5_1:45499076-45499095 | None:intergenic | 60.0% |
| !! | GTCACCATGGTGGATTGCGG+TGG | - | chr5_1:45499307-45499326 | Msa0732840:CDS | 60.0% |
| ACTGCCACCGCAATCCACCA+TGG | + | chr5_1:45499314-45499333 | None:intergenic | 60.0% | |
| !!! | GGTGGCGCCATGCCGTTTTA+TGG | - | chr5_1:45499370-45499389 | Msa0732840:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 45497627 | 45501546 | 45497627 | ID=Msa0732840;Name=Msa0732840 |
| chr5_1 | mRNA | 45497627 | 45501546 | 45497627 | ID=Msa0732840-mRNA-1;Parent=Msa0732840;Name=Msa0732840-mRNA-1;_AED=0.03;_eAED=0.03;_QI=142|1|0.83|1|0.8|0.66|6|219|465 |
| chr5_1 | exon | 45497627 | 45498652 | 45497627 | ID=Msa0732840-mRNA-1:exon:13016;Parent=Msa0732840-mRNA-1 |
| chr5_1 | exon | 45499004 | 45499382 | 45499004 | ID=Msa0732840-mRNA-1:exon:13015;Parent=Msa0732840-mRNA-1 |
| chr5_1 | exon | 45500942 | 45501064 | 45500942 | ID=Msa0732840-mRNA-1:exon:13014;Parent=Msa0732840-mRNA-1 |
| chr5_1 | exon | 45501157 | 45501183 | 45501157 | ID=Msa0732840-mRNA-1:exon:13013;Parent=Msa0732840-mRNA-1 |
| chr5_1 | exon | 45501315 | 45501408 | 45501315 | ID=Msa0732840-mRNA-1:exon:13012;Parent=Msa0732840-mRNA-1 |
| chr5_1 | exon | 45501437 | 45501546 | 45501437 | ID=Msa0732840-mRNA-1:exon:13011;Parent=Msa0732840-mRNA-1 |
| chr5_1 | five_prime_UTR | 45501437 | 45501546 | 45501437 | ID=Msa0732840-mRNA-1:five_prime_utr;Parent=Msa0732840-mRNA-1 |
| chr5_1 | five_prime_UTR | 45501377 | 45501408 | 45501377 | ID=Msa0732840-mRNA-1:five_prime_utr;Parent=Msa0732840-mRNA-1 |
| chr5_1 | CDS | 45501315 | 45501376 | 45501315 | ID=Msa0732840-mRNA-1:cds;Parent=Msa0732840-mRNA-1 |
| chr5_1 | CDS | 45501157 | 45501183 | 45501157 | ID=Msa0732840-mRNA-1:cds;Parent=Msa0732840-mRNA-1 |
| chr5_1 | CDS | 45500942 | 45501064 | 45500942 | ID=Msa0732840-mRNA-1:cds;Parent=Msa0732840-mRNA-1 |
| chr5_1 | CDS | 45499004 | 45499382 | 45499004 | ID=Msa0732840-mRNA-1:cds;Parent=Msa0732840-mRNA-1 |
| chr5_1 | CDS | 45497846 | 45498652 | 45497846 | ID=Msa0732840-mRNA-1:cds;Parent=Msa0732840-mRNA-1 |
| chr5_1 | three_prime_UTR | 45497627 | 45497845 | 45497627 | ID=Msa0732840-mRNA-1:three_prime_utr;Parent=Msa0732840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
