Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813140 | sp|Q39032|PLCD1_ARATH | 55.240 | 563 | 237 | 7 | 16 | 570 | 1 | 556 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813140 | G7JZH5 | 94.271 | 576 | 31 | 2 | 1 | 575 | 1 | 575 | 0.0 | 1103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0734260 | Msa0813140 | 0.819677 | 1.024240e-52 | -8.615850e-47 |
| Msa0775680 | Msa0813140 | 0.823123 | 1.640482e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813140 | MtrunA17_Chr5g0430191 | 94.271 | 576 | 31 | 2 | 1 | 575 | 1 | 575 | 0.0 | 1103 |
| Msa0813140 | MtrunA17_Chr5g0437081 | 52.020 | 594 | 239 | 12 | 17 | 572 | 3 | 588 | 0.0 | 601 |
| Msa0813140 | MtrunA17_Chr5g0430181 | 52.773 | 595 | 234 | 11 | 20 | 572 | 4 | 593 | 0.0 | 600 |
| Msa0813140 | MtrunA17_Chr3g0113531 | 52.277 | 593 | 247 | 9 | 13 | 572 | 3 | 592 | 0.0 | 587 |
| Msa0813140 | MtrunA17_Chr3g0112551 | 50.172 | 582 | 243 | 9 | 26 | 572 | 2 | 571 | 0.0 | 544 |
| Msa0813140 | MtrunA17_Chr3g0113521 | 48.700 | 577 | 253 | 14 | 31 | 572 | 18 | 586 | 3.05e-178 | 516 |
| Msa0813140 | MtrunA17_Chr5g0437041 | 46.362 | 591 | 272 | 10 | 26 | 572 | 17 | 606 | 3.54e-176 | 511 |
| Msa0813140 | MtrunA17_Chr5g0437061 | 52.738 | 493 | 191 | 7 | 122 | 573 | 1 | 492 | 1.22e-173 | 501 |
| Msa0813140 | MtrunA17_Chr3g0113471 | 47.743 | 576 | 262 | 13 | 31 | 572 | 17 | 587 | 2.38e-170 | 496 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813140 | AT5G58670.1 | 55.240 | 563 | 237 | 7 | 16 | 570 | 1 | 556 | 0.0 | 615 |
| Msa0813140 | AT3G08510.2 | 53.976 | 591 | 224 | 10 | 17 | 572 | 3 | 580 | 0.0 | 612 |
| Msa0813140 | AT3G08510.1 | 53.976 | 591 | 224 | 10 | 17 | 572 | 3 | 580 | 0.0 | 612 |
| Msa0813140 | AT3G55940.1 | 51.966 | 585 | 248 | 7 | 17 | 572 | 3 | 583 | 0.0 | 598 |
| Msa0813140 | AT4G38530.1 | 54.189 | 561 | 245 | 10 | 16 | 570 | 1 | 555 | 0.0 | 593 |
| Msa0813140 | AT2G40116.1 | 49.836 | 610 | 257 | 11 | 8 | 572 | 7 | 612 | 0.0 | 563 |
| Msa0813140 | AT3G08510.4 | 50.937 | 587 | 219 | 10 | 17 | 572 | 3 | 551 | 0.0 | 560 |
| Msa0813140 | AT3G08510.3 | 50.937 | 587 | 219 | 10 | 17 | 572 | 3 | 551 | 0.0 | 560 |
| Msa0813140 | AT5G58700.3 | 49.164 | 598 | 248 | 12 | 20 | 572 | 10 | 596 | 0.0 | 550 |
| Msa0813140 | AT5G58700.1 | 49.164 | 598 | 248 | 12 | 20 | 572 | 10 | 596 | 0.0 | 550 |
| Msa0813140 | AT5G58690.3 | 46.597 | 573 | 283 | 10 | 20 | 572 | 8 | 577 | 5.39e-176 | 510 |
| Msa0813140 | AT5G58690.1 | 46.597 | 573 | 283 | 10 | 20 | 572 | 8 | 577 | 5.39e-176 | 510 |
| Msa0813140 | AT5G58690.2 | 47.842 | 556 | 267 | 10 | 37 | 572 | 6 | 558 | 1.86e-174 | 506 |
| Msa0813140 | AT5G58700.2 | 54.209 | 487 | 189 | 10 | 118 | 572 | 4 | 488 | 6.00e-173 | 499 |
| Msa0813140 | AT3G47290.1 | 38.889 | 540 | 289 | 14 | 43 | 573 | 24 | 531 | 2.45e-116 | 356 |
| Msa0813140 | AT3G47290.2 | 38.662 | 538 | 289 | 14 | 43 | 571 | 24 | 529 | 4.40e-112 | 346 |
| Msa0813140 | AT3G47220.1 | 38.163 | 566 | 294 | 17 | 26 | 573 | 4 | 531 | 1.54e-105 | 328 |
Find 129 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACAATGGCAACAAAATT+TGG | 0.148822 | 5_3:-43643504 | Msa0813140:exon |
| TTCATTTGATGTGAATAATT+TGG | 0.150823 | 5_3:+43641224 | None:intergenic |
| ACATCATCTTCTCTAGAATT+TGG | 0.156414 | 5_3:+43641829 | None:intergenic |
| CTTCTTTCTCTTGTATCTTT+TGG | 0.161223 | 5_3:+43641123 | None:intergenic |
| CAATAACTTTAATGTGTAAT+AGG | 0.165025 | 5_3:+43638618 | None:intergenic |
| TGGGCATTATCTTCAATTTA+TGG | 0.203485 | 5_3:-43639632 | Msa0813140:CDS |
| TGCAATTAATTAGGATGAAT+TGG | 0.230610 | 5_3:-43640781 | Msa0813140:intron |
| GCCTTCTTTCGTTATCTCTT+TGG | 0.233212 | 5_3:-43643198 | Msa0813140:CDS |
| AGTGATTAGAAAATCGAAAT+TGG | 0.251999 | 5_3:+43638462 | None:intergenic |
| AAAATATTGTTGATTTCTTC+TGG | 0.260165 | 5_3:+43643387 | None:intergenic |
| TCCATTCATAGGATCATAAT+TGG | 0.264986 | 5_3:+43640208 | None:intergenic |
| ATGTGTAATAGGGCCAATTC+TGG | 0.280305 | 5_3:+43638629 | None:intergenic |
| CAATGTTCTACACTACCTTT+TGG | 0.288622 | 5_3:+43640690 | None:intergenic |
| GCCAATTCTGGATAAGTTAA+TGG | 0.289150 | 5_3:+43638641 | None:intergenic |
| AATATCATTCCCATGAGTTT+TGG | 0.294974 | 5_3:+43640605 | None:intergenic |
| GTGAACTTTATAAGCATGTT+AGG | 0.306118 | 5_3:-43638493 | Msa0813140:CDS |
| TCCATTAACTTATCCAGAAT+TGG | 0.320745 | 5_3:-43638642 | Msa0813140:CDS |
| GAGATTGTTTGAATGCCATT+AGG | 0.322747 | 5_3:-43641451 | Msa0813140:CDS |
| GATCACCTATGGGGCCATTT+AGG | 0.326314 | 5_3:+43643172 | None:intergenic |
| TATCTCTTTGGTGACCTAAA+TGG | 0.326337 | 5_3:-43643186 | Msa0813140:CDS |
| GAAATGTGTTTGGCCGAATT+CGG | 0.332390 | 5_3:+43639351 | None:intergenic |
| GGGCACAACTCCTACTTAAC+TGG | 0.341408 | 5_3:-43641937 | Msa0813140:CDS |
| TTTAACTCCTCATTCCAAAC+TGG | 0.342152 | 5_3:+43638668 | None:intergenic |
| TCTTCAAAAGTTATTATAAC+AGG | 0.350189 | 5_3:+43641401 | None:intergenic |
| ATATTCTAAGCAAATTCCTT+TGG | 0.356443 | 5_3:+43640258 | None:intergenic |
| AGATTGTTTGAATGCCATTA+GGG | 0.371595 | 5_3:-43641450 | Msa0813140:CDS |
| GTTGAAGAGGTGGAGTTATA+TGG | 0.372195 | 5_3:+43641378 | None:intergenic |
| AATAACTTTAATGTGTAATA+GGG | 0.374082 | 5_3:+43638619 | None:intergenic |
| GCAATTAATTAGGATGAATT+GGG | 0.377967 | 5_3:-43640780 | Msa0813140:intron |
| TATTCTAAGCAAATTCCTTT+GGG | 0.392694 | 5_3:+43640259 | None:intergenic |
| TTCCTTGGTCCTAGTTACTT+TGG | 0.403790 | 5_3:+43638703 | None:intergenic |
| AAGATGAGTGGGTCCCAGTT+TGG | 0.404309 | 5_3:-43638682 | Msa0813140:CDS |
| ACTTTGGTGTCTGTATCAAC+TGG | 0.418936 | 5_3:+43638719 | None:intergenic |
| GAAGGGTGGCAATCCGAATT+CGG | 0.419625 | 5_3:-43639364 | Msa0813140:CDS |
| TTCTTTGGTCGGTATACTCT+AGG | 0.420475 | 5_3:+43639529 | None:intergenic |
| ATCAAATGCATTGTCCCTAA+TGG | 0.423947 | 5_3:+43641436 | None:intergenic |
| CCCTTCAACGATTCCGGTGA+AGG | 0.425483 | 5_3:+43641194 | None:intergenic |
| TCCAATTATGATCCTATGAA+TGG | 0.426154 | 5_3:-43640209 | Msa0813140:CDS |
| CCATGCATCCATCCATTCAT+AGG | 0.428096 | 5_3:+43640197 | None:intergenic |
| GCTTATAAAGTTCACCTTTG+CGG | 0.428659 | 5_3:+43638501 | None:intergenic |
| CAATTGATTTCCAGTTAAGT+AGG | 0.432841 | 5_3:+43641927 | None:intergenic |
| AAAATTTACCTGATCACCTA+TGG | 0.438210 | 5_3:+43643161 | None:intergenic |
| CCGACCAAAGAAAACTCTTC+AGG | 0.446765 | 5_3:-43639518 | Msa0813140:intron |
| TTATTGCTCAATAAGATGTC+AGG | 0.447364 | 5_3:+43639565 | None:intergenic |
| CCCTTCACCGGAATCGTTGA+AGG | 0.448522 | 5_3:-43641195 | Msa0813140:CDS |
| AATTTGATTTCTATACATGC+TGG | 0.454192 | 5_3:-43640717 | Msa0813140:CDS |
| AAATGGCCCCATAGGTGATC+AGG | 0.455038 | 5_3:-43643169 | Msa0813140:intron |
| TGATGGAACATGATCAAGTT+AGG | 0.457893 | 5_3:-43640665 | Msa0813140:CDS |
| CCTTCTCTCAGCTCTGATAC+AGG | 0.459298 | 5_3:+43638548 | None:intergenic |
| ATTACCTGTACACGAAAATC+AGG | 0.460913 | 5_3:+43639313 | None:intergenic |
| GAATCCACACGTGAACCCTT+TGG | 0.470657 | 5_3:+43640233 | None:intergenic |
| AATGGTAGCATTTAATATGC+AGG | 0.472930 | 5_3:-43640168 | Msa0813140:intron |
| CAATAGAATGTTTAAGCTCA+AGG | 0.474052 | 5_3:-43643421 | Msa0813140:CDS |
| CTCATGGGAATGATATTGTC+AGG | 0.481646 | 5_3:-43640599 | Msa0813140:intron |
| GAGTAATTGAGTTGGATTTG+TGG | 0.483851 | 5_3:-43641852 | Msa0813140:CDS |
| AGGAGTTAGAGTAATTGAGT+TGG | 0.488235 | 5_3:-43641860 | Msa0813140:CDS |
| GAGGAGGAGGATGAGACTCT+TGG | 0.488999 | 5_3:-43640747 | Msa0813140:CDS |
| TGTTTGTGTTTGTATTATGA+AGG | 0.489396 | 5_3:-43638428 | Msa0813140:three_prime_UTR |
| GAAGAAATCGCCAAAACTCA+TGG | 0.491346 | 5_3:-43640615 | Msa0813140:CDS |
| GATTAATGATGTCTCTTGAG+TGG | 0.492752 | 5_3:+43643533 | None:intergenic |
| TTCAAAGCCAATGGTGGATG+TGG | 0.497499 | 5_3:-43639601 | Msa0813140:CDS |
| TAGTGTAGAACATTGGTTGA+TGG | 0.502502 | 5_3:-43640682 | Msa0813140:CDS |
| AATGAAGAAATTCCCTTCAC+CGG | 0.503675 | 5_3:-43641207 | Msa0813140:CDS |
| AAAACAGGTTCATGTATACA+TGG | 0.505592 | 5_3:-43639389 | Msa0813140:intron |
| ATGGTGGATGATATATTTAG+AGG | 0.505987 | 5_3:-43641260 | Msa0813140:CDS |
| AACATACCCACATCCACCAT+TGG | 0.508710 | 5_3:+43639594 | None:intergenic |
| TCAAGATATGAATGCTCCAT+TGG | 0.508763 | 5_3:-43641980 | Msa0813140:CDS |
| TGGGACCCACTCATCTTCCT+TGG | 0.515917 | 5_3:+43638688 | None:intergenic |
| TATTATAACAGGATACTTTG+AGG | 0.519500 | 5_3:+43641412 | None:intergenic |
| GCGACTTTGCGTTGAAGAGG+TGG | 0.519693 | 5_3:+43641368 | None:intergenic |
| CTTTGACTTTCAGGAGACTC+CGG | 0.522060 | 5_3:+43641146 | None:intergenic |
| CATTATCTTCAATTTATGGA+AGG | 0.529543 | 5_3:-43639628 | Msa0813140:CDS |
| TTGCTTAGAATATATCCAAA+GGG | 0.535506 | 5_3:-43640248 | Msa0813140:CDS |
| ATACATGCTGGGAAGCCAAA+AGG | 0.535904 | 5_3:-43640705 | Msa0813140:CDS |
| ATGGATGCATGGAGCTCAAA+TGG | 0.541893 | 5_3:-43640186 | Msa0813140:CDS |
| AAATTTACCTGATCACCTAT+GGG | 0.546547 | 5_3:+43643162 | None:intergenic |
| CCTTCAACGATTCCGGTGAA+GGG | 0.550981 | 5_3:+43641195 | None:intergenic |
| CCTTCACCGGAATCGTTGAA+GGG | 0.553552 | 5_3:-43641194 | Msa0813140:CDS |
| GAAAGAAGTTGAGTTGCTTG+AGG | 0.556535 | 5_3:-43641108 | Msa0813140:CDS |
| GGTGACCTAAATGGCCCCAT+AGG | 0.558499 | 5_3:-43643177 | Msa0813140:CDS |
| ATTTGATTTCTATACATGCT+GGG | 0.559181 | 5_3:-43640716 | Msa0813140:CDS |
| ACCAAAGAGATAACGAAAGA+AGG | 0.560155 | 5_3:+43643197 | None:intergenic |
| TTGCTTGAGGACAAAGATGA+TGG | 0.561570 | 5_3:-43641095 | Msa0813140:CDS |
| ATTGTGCAGGTTGGTATCCA+TGG | 0.563061 | 5_3:-43638746 | Msa0813140:intron |
| GTTCATGTATACATGGGTGA+AGG | 0.563579 | 5_3:-43639382 | Msa0813140:CDS |
| TCTGATTTCAACAAAACCAC+CGG | 0.570063 | 5_3:-43641165 | Msa0813140:CDS |
| CATGCTTTAGATTCACCCAA+AGG | 0.572447 | 5_3:-43640274 | Msa0813140:intron |
| TTTAATCGATTTGTTCCTAG+AGG | 0.572525 | 5_3:+43643470 | None:intergenic |
| GGGTGATGAAAGTGAGGAGG+AGG | 0.575323 | 5_3:-43640760 | Msa0813140:CDS |
| TTTGCTTAGAATATATCCAA+AGG | 0.575916 | 5_3:-43640249 | Msa0813140:CDS |
| AAGAAATCGCCAAAACTCAT+GGG | 0.576013 | 5_3:-43640614 | Msa0813140:CDS |
| TTGGCGACTTTGCGTTGAAG+AGG | 0.577736 | 5_3:+43641365 | None:intergenic |
| TTAACTCCTCATTCCAAACT+GGG | 0.583535 | 5_3:+43638669 | None:intergenic |
| ATTATGATCCTATGAATGGA+TGG | 0.583921 | 5_3:-43640205 | Msa0813140:CDS |
| ATGTGGAAGTTCGTCATGGA+GGG | 0.587464 | 5_3:-43641810 | Msa0813140:intron |
| ATTCATAGGATCATAATTGG+AGG | 0.587604 | 5_3:+43640211 | None:intergenic |
| GTGGGTCCCAGTTTGGAATG+AGG | 0.590724 | 5_3:-43638675 | Msa0813140:CDS |
| CACCAAAGTAACTAGGACCA+AGG | 0.591110 | 5_3:-43638705 | Msa0813140:CDS |
| CAAAAGGTAGTGTAGAACAT+TGG | 0.592726 | 5_3:-43640689 | Msa0813140:CDS |
| GAAGGAATGTTCAAAGCCAA+TGG | 0.594868 | 5_3:-43639610 | Msa0813140:CDS |
| AAAGTAGTACAATTCATCCA+TGG | 0.596287 | 5_3:+43643335 | None:intergenic |
| ATACAGACACCAAAGTAACT+AGG | 0.599754 | 5_3:-43638712 | Msa0813140:CDS |
| CCTATGAATGGATGGATGCA+TGG | 0.600723 | 5_3:-43640197 | Msa0813140:CDS |
| ATATTGTTGATTTCTTCTGG+TGG | 0.604922 | 5_3:+43643390 | None:intergenic |
| GTACAATTCATCCATGGTCA+TGG | 0.605855 | 5_3:+43643341 | None:intergenic |
| TTCATGTATACATGGGTGAA+GGG | 0.607521 | 5_3:-43639381 | Msa0813140:CDS |
| CCTGTATCAGAGCTGAGAGA+AGG | 0.608048 | 5_3:-43638548 | Msa0813140:CDS |
| TAGGACCAAGGAAGATGAGT+GGG | 0.620046 | 5_3:-43638693 | Msa0813140:CDS |
| CTTCACCGGAATCGTTGAAG+GGG | 0.628199 | 5_3:-43641193 | Msa0813140:CDS |
| ATATCCAAAGGGTTCACGTG+TGG | 0.629079 | 5_3:-43640237 | Msa0813140:CDS |
| ATTAATCAAACACAAAACAA+TGG | 0.635967 | 5_3:-43643517 | Msa0813140:exon |
| TGACTTTCAGGAGACTCCGG+TGG | 0.638079 | 5_3:+43641149 | None:intergenic |
| GATGATGTGGAAGTTCGTCA+TGG | 0.639310 | 5_3:-43641814 | Msa0813140:CDS |
| CTCAATATATTTCAAAGACG+AGG | 0.640993 | 5_3:-43643234 | Msa0813140:CDS |
| GGAATGTTCAAAGCCAATGG+TGG | 0.642892 | 5_3:-43639607 | Msa0813140:CDS |
| ACCTGTACACGAAAATCAGG+TGG | 0.643370 | 5_3:+43639316 | None:intergenic |
| TGAATTGGGTGATGAAAGTG+AGG | 0.645890 | 5_3:-43640766 | Msa0813140:CDS |
| GTTCGTTTGTGTAACCGCAA+AGG | 0.648872 | 5_3:-43638515 | Msa0813140:CDS |
| ATGTATACATGGGTGAAGGG+TGG | 0.650452 | 5_3:-43639378 | Msa0813140:CDS |
| AAATTCTAGAGAAGATGATG+TGG | 0.650989 | 5_3:-43641827 | Msa0813140:CDS |
| AAACAGGTTCATGTATACAT+GGG | 0.651638 | 5_3:-43639388 | Msa0813140:intron |
| CTGTATCAACTGGAACACCA+TGG | 0.659642 | 5_3:+43638729 | None:intergenic |
| GATGTGGAAGTTCGTCATGG+AGG | 0.680496 | 5_3:-43641811 | Msa0813140:CDS |
| CTAGGACCAAGGAAGATGAG+TGG | 0.682226 | 5_3:-43638694 | Msa0813140:CDS |
| TCAAAGCCAATGGTGGATGT+GGG | 0.703468 | 5_3:-43639600 | Msa0813140:CDS |
| TGGATCTAGAGTCAATGATG+AGG | 0.706973 | 5_3:-43641075 | Msa0813140:intron |
| ATTGGGTGATGAAAGTGAGG+AGG | 0.710688 | 5_3:-43640763 | Msa0813140:CDS |
| AATTTACCTGATCACCTATG+GGG | 0.721386 | 5_3:+43643163 | None:intergenic |
| TAGAATGTTTAAGCTCAAGG+TGG | 0.727418 | 5_3:-43643418 | Msa0813140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTATTTTTCTTAAAGA+GGG | - | chr5_3:43638809-43638828 | Msa0813140:intron | 10.0% |
| !! | GAAAAACTAAAAAATTTATA+GGG | + | chr5_3:43638998-43639017 | None:intergenic | 10.0% |
| !! | AGAAAAACTAAAAAATTTAT+AGG | + | chr5_3:43638999-43639018 | None:intergenic | 10.0% |
| !!! | TAAATTTGTGATATTTTTTT+TGG | - | chr5_3:43639049-43639068 | Msa0813140:intron | 10.0% |
| !!! | AAATTTGTGATATTTTTTTT+GGG | - | chr5_3:43639050-43639069 | Msa0813140:intron | 10.0% |
| !! | AAATATATTTAATATTAGTG+AGG | + | chr5_3:43639097-43639116 | None:intergenic | 10.0% |
| !!! | ACGATATAATTTAATTTTTT+GGG | + | chr5_3:43639227-43639246 | None:intergenic | 10.0% |
| !!! | AACGATATAATTTAATTTTT+TGG | + | chr5_3:43639228-43639247 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTTTTTCTTTTT+TGG | - | chr5_3:43639297-43639316 | Msa0813140:intron | 10.0% |
| !! | ATATATAATTGTAATTGTTA+AGG | + | chr5_3:43639850-43639869 | None:intergenic | 10.0% |
| !!! | ATATTTGAATTTTTTATTTC+AGG | - | chr5_3:43639866-43639885 | Msa0813140:intron | 10.0% |
| !! | TGAATTTGATAAATAATTTA+GGG | - | chr5_3:43640880-43640899 | Msa0813140:intron | 10.0% |
| !!! | CTTTTTAATTTAAAAAACAA+AGG | - | chr5_3:43640973-43640992 | Msa0813140:intron | 10.0% |
| !!! | AATATTTTTTGCAATTAATT+AGG | - | chr5_3:43641083-43641102 | Msa0813140:CDS | 10.0% |
| !! | TTAAATATAAGAAGTAAATT+AGG | - | chr5_3:43641866-43641885 | Msa0813140:CDS | 10.0% |
| !!! | ATTAATTTTGTTTTACTTAA+AGG | - | chr5_3:43642214-43642233 | Msa0813140:intron | 10.0% |
| !!! | TTAATTTTGTTTTACTTAAA+GGG | - | chr5_3:43642215-43642234 | Msa0813140:intron | 10.0% |
| !! | TCTAATATTAAAAAAAAAAC+AGG | - | chr5_3:43642469-43642488 | Msa0813140:intron | 10.0% |
| !! | AAAAAACAAAATCATATTTA+CGG | + | chr5_3:43642984-43643003 | None:intergenic | 10.0% |
| !!! | AAATCAACAATATTTTTAAC+AGG | - | chr5_3:43638493-43638512 | Msa0813140:CDS | 15.0% |
| !!! | CTCTTTAAGAAAAATAATTT+AGG | + | chr5_3:43638810-43638829 | None:intergenic | 15.0% |
| !!! | CTAAATTATTTTTCTTAAAG+AGG | - | chr5_3:43638808-43638827 | Msa0813140:intron | 15.0% |
| !! | TATAGAAATCTTTGTATATA+TGG | + | chr5_3:43638967-43638986 | None:intergenic | 15.0% |
| !! | TTATAAAATTCTCAATTTCT+TGG | + | chr5_3:43639134-43639153 | None:intergenic | 15.0% |
| !!! | TGATTTTCTTAAATTATTAG+CGG | + | chr5_3:43639508-43639527 | None:intergenic | 15.0% |
| !! | TCAAATACTACAAATTTAAT+CGG | - | chr5_3:43639696-43639715 | Msa0813140:intron | 15.0% |
| !! | GTGAATTTGATAAATAATTT+AGG | - | chr5_3:43640879-43640898 | Msa0813140:intron | 15.0% |
| !!! | ATTTTGAAGTACATATTTAT+AGG | + | chr5_3:43640950-43640969 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAGTGTAACAAA+TGG | - | chr5_3:43641014-43641033 | Msa0813140:intron | 15.0% |
| !!! | TCAATTATTTTTAATGTAGT+GGG | - | chr5_3:43641343-43641362 | Msa0813140:intron | 15.0% |
| !! | GTTTGAATGAAAAAAAAAAT+AGG | + | chr5_3:43641401-43641420 | None:intergenic | 15.0% |
| !!! | ATAAACTTAATTGCTATTTT+GGG | + | chr5_3:43641432-43641451 | None:intergenic | 15.0% |
| !!! | TATAAACTTAATTGCTATTT+TGG | + | chr5_3:43641433-43641452 | None:intergenic | 15.0% |
| !! | GTAACAATTAATTAACAATA+GGG | + | chr5_3:43641558-43641577 | None:intergenic | 15.0% |
| !! | TGTAACAATTAATTAACAAT+AGG | + | chr5_3:43641559-43641578 | None:intergenic | 15.0% |
| !! | TTTATAAATAAACAATGGAA+AGG | + | chr5_3:43642084-43642103 | None:intergenic | 15.0% |
| !! | CGAAATTTATAAATAAACAA+TGG | + | chr5_3:43642089-43642108 | None:intergenic | 15.0% |
| !!! | TCCTTTTCTTATTTATTTAT+TGG | - | chr5_3:43642180-43642199 | Msa0813140:intron | 15.0% |
| !!! | TTTTTAATATTAGATAGACT+TGG | + | chr5_3:43642463-43642482 | None:intergenic | 15.0% |
| !! | AATAACTTTAATGTGTAATA+GGG | + | chr5_3:43643257-43643276 | None:intergenic | 15.0% |
| !! | ATTAATCAAACACAAAACAA+TGG | - | chr5_3:43638356-43638375 | Msa0813140:three_prime_UTR | 20.0% |
| !!! | AAAATATTGTTGATTTCTTC+TGG | + | chr5_3:43638489-43638508 | None:intergenic | 20.0% |
| !!! | TACTTTTTAGTTCATTTTCA+AGG | - | chr5_3:43638555-43638574 | Msa0813140:CDS | 20.0% |
| !! | TATAGATAATAAGGATAAAC+TGG | + | chr5_3:43638741-43638760 | None:intergenic | 20.0% |
| !!! | TAGAAATATTTGGTTTTTAG+CGG | - | chr5_3:43638838-43638857 | Msa0813140:intron | 20.0% |
| !! | TATAGCAAATTGAAACAAAA+AGG | + | chr5_3:43638937-43638956 | None:intergenic | 20.0% |
| !! | AACTAAAAAATTTATAGGGA+GGG | + | chr5_3:43638994-43639013 | None:intergenic | 20.0% |
| !! | AAACTAAAAAATTTATAGGG+AGG | + | chr5_3:43638995-43639014 | None:intergenic | 20.0% |
| !! | TTAAGATTAATTTCTCTAGT+AGG | + | chr5_3:43639187-43639206 | None:intergenic | 20.0% |
| !! | AAAAACAAAAAAAGATGAGT+GGG | + | chr5_3:43639288-43639307 | None:intergenic | 20.0% |
| !! | AAAAAACAAAAAAAGATGAG+TGG | + | chr5_3:43639289-43639308 | None:intergenic | 20.0% |
| !! | AAATTATGATGTATTACGTA+AGG | - | chr5_3:43639381-43639400 | Msa0813140:CDS | 20.0% |
| !! | AATTATGATGTATTACGTAA+GGG | - | chr5_3:43639382-43639401 | Msa0813140:CDS | 20.0% |
| !! | TTAGGCATAATATGAAAAAA+TGG | + | chr5_3:43639410-43639429 | None:intergenic | 20.0% |
| !!! | ATTTTTTCATATTATGCCTA+AGG | - | chr5_3:43639409-43639428 | Msa0813140:intron | 20.0% |
| !! | ACATAATTCAGTGTAATTAT+AGG | - | chr5_3:43639527-43639546 | Msa0813140:CDS | 20.0% |
| !!! | TTTTCAGAGCTTTTATTATT+GGG | + | chr5_3:43639992-43640011 | None:intergenic | 20.0% |
| !!! | TTTTTCAGAGCTTTTATTAT+TGG | + | chr5_3:43639993-43640012 | None:intergenic | 20.0% |
| !!! | ATAATAAAAGCTCTGAAAAA+AGG | - | chr5_3:43639993-43640012 | Msa0813140:intron | 20.0% |
| !! | TTATATATAAAGCTGAAAGT+TGG | + | chr5_3:43640344-43640363 | None:intergenic | 20.0% |
| !! | TCTTCAAAAGTTATTATAAC+AGG | + | chr5_3:43640475-43640494 | None:intergenic | 20.0% |
| !! | TGCAAAAAATTTACAAACTT+TGG | + | chr5_3:43640530-43640549 | None:intergenic | 20.0% |
| !!! | TTTTAGACTATGATATATAG+TGG | + | chr5_3:43640562-43640581 | None:intergenic | 20.0% |
| !! | ATTAATATTTACAATGCAGA+TGG | - | chr5_3:43640594-43640613 | Msa0813140:intron | 20.0% |
| !! | TTCATTTGATGTGAATAATT+TGG | + | chr5_3:43640652-43640671 | None:intergenic | 20.0% |
| !!! | ATTTAATTTCACTTTGCTTA+TGG | - | chr5_3:43640829-43640848 | Msa0813140:intron | 20.0% |
| !!! | TTTAATTTCACTTTGCTTAT+GGG | - | chr5_3:43640830-43640849 | Msa0813140:intron | 20.0% |
| !!! | CTCAATTATTTTTAATGTAG+TGG | - | chr5_3:43641342-43641361 | Msa0813140:intron | 20.0% |
| !! | TTATACTTCAATACTTGTAT+AGG | - | chr5_3:43641448-43641467 | Msa0813140:CDS | 20.0% |
| !! | TATACTTCAATACTTGTATA+GGG | - | chr5_3:43641449-43641468 | Msa0813140:CDS | 20.0% |
| !!! | GTTTTATAATAACTTCCAAA+AGG | - | chr5_3:43641832-43641851 | Msa0813140:CDS | 20.0% |
| !!! | TTAATTATAAGTTGACCTTT+TGG | + | chr5_3:43641850-43641869 | None:intergenic | 20.0% |
| !!! | GTTATGAAAATACTTTTCTT+AGG | + | chr5_3:43641974-43641993 | None:intergenic | 20.0% |
| !!! | AGTATTTTCATAACAACATA+TGG | - | chr5_3:43641980-43641999 | Msa0813140:CDS | 20.0% |
| !!! | AAAGTTTGAGAATTTTTTTG+CGG | - | chr5_3:43642123-43642142 | Msa0813140:intron | 20.0% |
| !! | GCCAATAAATAAATAAGAAA+AGG | + | chr5_3:43642184-43642203 | None:intergenic | 20.0% |
| !! | GGTTACTTATAATTCAAATT+TGG | - | chr5_3:43642390-43642409 | Msa0813140:intron | 20.0% |
| !! | AATAAAAATCGAAATGTGTT+TGG | + | chr5_3:43642535-43642554 | None:intergenic | 20.0% |
| !!! | AATTATACTTTTGATTGTGA+TGG | - | chr5_3:43642580-43642599 | Msa0813140:intron | 20.0% |
| !!! | GACTTATTTAAAATTATCCA+CGG | - | chr5_3:43642629-43642648 | Msa0813140:intron | 20.0% |
| !!! | ACAAATAGTACATTTTAGTT+CGG | - | chr5_3:43643042-43643061 | Msa0813140:intron | 20.0% |
| !! | CAATAACTTTAATGTGTAAT+AGG | + | chr5_3:43643258-43643277 | None:intergenic | 20.0% |
| ! | AAAACAATGGCAACAAAATT+TGG | - | chr5_3:43638369-43638388 | Msa0813140:three_prime_UTR | 25.0% |
| ! | TATTGAAACAAAAACAGACT+TGG | + | chr5_3:43638437-43638456 | None:intergenic | 25.0% |
| ! | TTTAACAGGTATGCAAAAAA+TGG | - | chr5_3:43638507-43638526 | Msa0813140:CDS | 25.0% |
| !!! | TATTGAGATGTTTTAAACTG+TGG | + | chr5_3:43638626-43638645 | None:intergenic | 25.0% |
| ! | TCCTTATTATCTATAAAGCA+CGG | - | chr5_3:43638746-43638765 | Msa0813140:intron | 25.0% |
| ! | AGGGTGTATATAGAAATATT+TGG | - | chr5_3:43638828-43638847 | Msa0813140:intron | 25.0% |
| !!! | AGAAATATTTGGTTTTTAGC+GGG | - | chr5_3:43638839-43638858 | Msa0813140:intron | 25.0% |
| ! | TGTATAGAAAAGTTTACTGA+AGG | - | chr5_3:43638864-43638883 | Msa0813140:intron | 25.0% |
| ! | AGAAATCTTTGTATATATGG+TGG | + | chr5_3:43638964-43638983 | None:intergenic | 25.0% |
| ! | GGAACATTATTAGATACAAA+GGG | + | chr5_3:43639076-43639095 | None:intergenic | 25.0% |
| ! | AGGAACATTATTAGATACAA+AGG | + | chr5_3:43639077-43639096 | None:intergenic | 25.0% |
| ! | AAATCATGTGTTACGAATTT+AGG | - | chr5_3:43639253-43639272 | Msa0813140:intron | 25.0% |
| ! | TAGTAAAATGCTGGAAAAAA+CGG | - | chr5_3:43639320-43639339 | Msa0813140:CDS | 25.0% |
| ! | ATTATGATGTATTACGTAAG+GGG | - | chr5_3:43639383-43639402 | Msa0813140:CDS | 25.0% |
| ! | TGATAATAAGTTATGAAGCA+CGG | + | chr5_3:43639627-43639646 | None:intergenic | 25.0% |
| ! | TGTAATTGTTAAGGATTTAG+TGG | + | chr5_3:43639841-43639860 | None:intergenic | 25.0% |
| ! | TACAAAAAATAATGAGCCAA+TGG | + | chr5_3:43639912-43639931 | None:intergenic | 25.0% |
| !!! | CTCATTATTTTTTGTACACA+GGG | - | chr5_3:43639916-43639935 | Msa0813140:intron | 25.0% |
| !! | TATGAAGCACAAATACTTTT+CGG | - | chr5_3:43640105-43640124 | Msa0813140:intron | 25.0% |
| ! | TATTATAACAGGATACTTTG+AGG | + | chr5_3:43640464-43640483 | None:intergenic | 25.0% |
| !! | AGCTGATTCAAGATATATAT+AGG | + | chr5_3:43641041-43641060 | None:intergenic | 25.0% |
| ! | TATATATATCTTGAATCAGC+TGG | - | chr5_3:43641040-43641059 | Msa0813140:intron | 25.0% |
| ! | ATATATATCTTGAATCAGCT+GGG | - | chr5_3:43641041-43641060 | Msa0813140:intron | 25.0% |
| ! | TGCAATTAATTAGGATGAAT+TGG | - | chr5_3:43641092-43641111 | Msa0813140:CDS | 25.0% |
| ! | GCAATTAATTAGGATGAATT+GGG | - | chr5_3:43641093-43641112 | Msa0813140:CDS | 25.0% |
| !! | AATTTGATTTCTATACATGC+TGG | - | chr5_3:43641156-43641175 | Msa0813140:CDS | 25.0% |
| !! | ATTTGATTTCTATACATGCT+GGG | - | chr5_3:43641157-43641176 | Msa0813140:CDS | 25.0% |
| ! | TATTCTAAGCAAATTCCTTT+GGG | + | chr5_3:43641617-43641636 | None:intergenic | 25.0% |
| ! | ATATTCTAAGCAAATTCCTT+TGG | + | chr5_3:43641618-43641637 | None:intergenic | 25.0% |
| ! | TTTGCTTAGAATATATCCAA+AGG | - | chr5_3:43641624-43641643 | Msa0813140:intron | 25.0% |
| ! | TTGCTTAGAATATATCCAAA+GGG | - | chr5_3:43641625-43641644 | Msa0813140:intron | 25.0% |
| ! | TCTCTCAATTGTCAAATAAA+TGG | + | chr5_3:43641745-43641764 | None:intergenic | 25.0% |
| !! | CATGTTACATTCATAGTTTT+AGG | + | chr5_3:43641910-43641929 | None:intergenic | 25.0% |
| !! | ATTTTCATAACAACATATGG+CGG | - | chr5_3:43641983-43642002 | Msa0813140:CDS | 25.0% |
| ! | AATTGTATAAAATGAAGGCA+AGG | + | chr5_3:43642034-43642053 | None:intergenic | 25.0% |
| ! | CCAACAATTGTATAAAATGA+AGG | + | chr5_3:43642039-43642058 | None:intergenic | 25.0% |
| !! | CCTTCATTTTATACAATTGT+TGG | - | chr5_3:43642036-43642055 | Msa0813140:intron | 25.0% |
| ! | CATTATCTTCAATTTATGGA+AGG | - | chr5_3:43642245-43642264 | Msa0813140:intron | 25.0% |
| ! | CTTCAGTATATAAAGTAAGA+TGG | + | chr5_3:43642440-43642459 | None:intergenic | 25.0% |
| !! | ATTGTGATGGAAATGATTTA+AGG | - | chr5_3:43642593-43642612 | Msa0813140:intron | 25.0% |
| ! | TAAGTATAGGTAAGACTATA+TGG | - | chr5_3:43642655-43642674 | Msa0813140:intron | 25.0% |
| ! | ATATTGACACGTAATAATTG+AGG | + | chr5_3:43643109-43643128 | None:intergenic | 25.0% |
| ! | AGTGATTAGAAAATCGAAAT+TGG | + | chr5_3:43643414-43643433 | None:intergenic | 25.0% |
| ! | TGTTTGTGTTTGTATTATGA+AGG | - | chr5_3:43643445-43643464 | Msa0813140:CDS | 25.0% |
| !!! | TTGGTTTTAGTAAAACCTCT+AGG | - | chr5_3:43638388-43638407 | Msa0813140:three_prime_UTR | 30.0% |
| !! | TTTAATCGATTTGTTCCTAG+AGG | + | chr5_3:43638406-43638425 | None:intergenic | 30.0% |
| CAATAGAATGTTTAAGCTCA+AGG | - | chr5_3:43638452-43638471 | Msa0813140:exon | 30.0% | |
| !! | ATATTGTTGATTTCTTCTGG+TGG | + | chr5_3:43638486-43638505 | None:intergenic | 30.0% |
| AAAGTAGTACAATTCATCCA+TGG | + | chr5_3:43638541-43638560 | None:intergenic | 30.0% | |
| !! | AGTTCATTTTCAAGGAGAAA+AGG | - | chr5_3:43638563-43638582 | Msa0813140:CDS | 30.0% |
| !! | GTTCATTTTCAAGGAGAAAA+GGG | - | chr5_3:43638564-43638583 | Msa0813140:CDS | 30.0% |
| ! | AACATCTTGAGCATGTTTTT+GGG | + | chr5_3:43638601-43638620 | None:intergenic | 30.0% |
| ! | AAACATCTTGAGCATGTTTT+TGG | + | chr5_3:43638602-43638621 | None:intergenic | 30.0% |
| CTCAATATATTTCAAAGACG+AGG | - | chr5_3:43638639-43638658 | Msa0813140:CDS | 30.0% | |
| AAATTTACCTGATCACCTAT+GGG | + | chr5_3:43638714-43638733 | None:intergenic | 30.0% | |
| AAAATTTACCTGATCACCTA+TGG | + | chr5_3:43638715-43638734 | None:intergenic | 30.0% | |
| TCCGTGCTTTATAGATAATA+AGG | + | chr5_3:43638750-43638769 | None:intergenic | 30.0% | |
| TACAACCTTTCAACATGTTT+GGG | + | chr5_3:43638891-43638910 | None:intergenic | 30.0% | |
| AAAAGGCTATAAACATGAAC+AGG | + | chr5_3:43638920-43638939 | None:intergenic | 30.0% | |
| ! | GTTACGAATTTAGGATCATA+TGG | - | chr5_3:43639262-43639281 | Msa0813140:intron | 30.0% |
| !!! | CTTTTTTGGTAGTAAAATGC+TGG | - | chr5_3:43639311-43639330 | Msa0813140:intron | 30.0% |
| ! | CACATTGTTGTGATTTTATC+AGG | + | chr5_3:43639354-43639373 | None:intergenic | 30.0% |
| TTATGATGTATTACGTAAGG+GGG | - | chr5_3:43639384-43639403 | Msa0813140:CDS | 30.0% | |
| TTCAGTGTAATTATAGGTGA+CGG | - | chr5_3:43639533-43639552 | Msa0813140:CDS | 30.0% | |
| ! | TTTTACCAAATAGAGCCAAA+AGG | - | chr5_3:43639796-43639815 | Msa0813140:intron | 30.0% |
| ! | AAAAGATATGTGCATCCTTT+TGG | + | chr5_3:43639814-43639833 | None:intergenic | 30.0% |
| ! | AAAAGGATGCACATATCTTT+TGG | - | chr5_3:43639813-43639832 | Msa0813140:intron | 30.0% |
| !!! | GCTCATTATTTTTTGTACAC+AGG | - | chr5_3:43639915-43639934 | Msa0813140:intron | 30.0% |
| ! | CAATTGATTTCCAGTTAAGT+AGG | + | chr5_3:43639949-43639968 | None:intergenic | 30.0% |
| !! | ACATCATCTTCTCTAGAATT+TGG | + | chr5_3:43640047-43640066 | None:intergenic | 30.0% |
| ! | AAATTCTAGAGAAGATGATG+TGG | - | chr5_3:43640046-43640065 | Msa0813140:intron | 30.0% |
| TATTGAAAACCTATGAAGCA+CGG | + | chr5_3:43640269-43640288 | None:intergenic | 30.0% | |
| TCAACAATGTGCTACAATAT+TGG | + | chr5_3:43640308-43640327 | None:intergenic | 30.0% | |
| !!! | TTGACTTATTTTTGAGCTGT+AGG | - | chr5_3:43640374-43640393 | Msa0813140:intron | 30.0% |
| AGATTGTTTGAATGCCATTA+GGG | - | chr5_3:43640423-43640442 | Msa0813140:intron | 30.0% | |
| AATATTTACAATGCAGATGG+TGG | - | chr5_3:43640597-43640616 | Msa0813140:intron | 30.0% | |
| !! | ATGGTGGATGATATATTTAG+AGG | - | chr5_3:43640613-43640632 | Msa0813140:CDS | 30.0% |
| ! | CTTCTTTCTCTTGTATCTTT+TGG | + | chr5_3:43640753-43640772 | None:intergenic | 30.0% |
| TATATATCTTGAATCAGCTG+GGG | - | chr5_3:43641042-43641061 | Msa0813140:intron | 30.0% | |
| ! | AATATCATTCCCATGAGTTT+TGG | + | chr5_3:43641271-43641290 | None:intergenic | 30.0% |
| CCAAACAATTCTTGCATATA+TGG | + | chr5_3:43641494-43641513 | None:intergenic | 30.0% | |
| CCATATATGCAAGAATTGTT+TGG | - | chr5_3:43641491-43641510 | Msa0813140:intron | 30.0% | |
| ATTCATAGGATCATAATTGG+AGG | + | chr5_3:43641665-43641684 | None:intergenic | 30.0% | |
| TCCAATTATGATCCTATGAA+TGG | - | chr5_3:43641664-43641683 | Msa0813140:intron | 30.0% | |
| TCCATTCATAGGATCATAAT+TGG | + | chr5_3:43641668-43641687 | None:intergenic | 30.0% | |
| ATTATGATCCTATGAATGGA+TGG | - | chr5_3:43641668-43641687 | Msa0813140:intron | 30.0% | |
| AATGGTAGCATTTAATATGC+AGG | - | chr5_3:43641705-43641724 | Msa0813140:intron | 30.0% | |
| AGGATGCAAGTTGTTATAAT+AGG | + | chr5_3:43641954-43641973 | None:intergenic | 30.0% | |
| !! | TTGTTTTACTTAAAGGGACA+TGG | - | chr5_3:43642221-43642240 | Msa0813140:intron | 30.0% |
| ! | TGTTTTACTTAAAGGGACAT+GGG | - | chr5_3:43642222-43642241 | Msa0813140:intron | 30.0% |
| TGGGCATTATCTTCAATTTA+TGG | - | chr5_3:43642241-43642260 | Msa0813140:intron | 30.0% | |
| TTATTGCTCAATAAGATGTC+AGG | + | chr5_3:43642311-43642330 | None:intergenic | 30.0% | |
| ! | TTTACCTGAAGAGTTTTCTT+TGG | + | chr5_3:43642362-43642381 | None:intergenic | 30.0% |
| AAAGAAAACTCTTCAGGTAA+AGG | - | chr5_3:43642361-43642380 | Msa0813140:intron | 30.0% | |
| AAGAAAACTCTTCAGGTAAA+GGG | - | chr5_3:43642362-43642381 | Msa0813140:intron | 30.0% | |
| AAAACAGGTTCATGTATACA+TGG | - | chr5_3:43642484-43642503 | Msa0813140:intron | 30.0% | |
| AAACAGGTTCATGTATACAT+GGG | - | chr5_3:43642485-43642504 | Msa0813140:intron | 30.0% | |
| TTATCCACGGATTTAAGTAT+AGG | - | chr5_3:43642642-43642661 | Msa0813140:intron | 30.0% | |
| TTGAAACAATTAGCAGTGTT+TGG | + | chr5_3:43642889-43642908 | None:intergenic | 30.0% | |
| TCCATTAACTTATCCAGAAT+TGG | - | chr5_3:43643231-43643250 | Msa0813140:CDS | 30.0% | |
| GTGAACTTTATAAGCATGTT+AGG | - | chr5_3:43643380-43643399 | Msa0813140:CDS | 30.0% | |
| GATTAATGATGTCTCTTGAG+TGG | + | chr5_3:43638343-43638362 | None:intergenic | 35.0% | |
| TAGAATGTTTAAGCTCAAGG+TGG | - | chr5_3:43638455-43638474 | Msa0813140:exon | 35.0% | |
| AAAAAATGGTACCATGACCA+TGG | - | chr5_3:43638521-43638540 | Msa0813140:CDS | 35.0% | |
| ACCAAAGAGATAACGAAAGA+AGG | + | chr5_3:43638679-43638698 | None:intergenic | 35.0% | |
| ! | TATCTCTTTGGTGACCTAAA+TGG | - | chr5_3:43638687-43638706 | Msa0813140:CDS | 35.0% |
| AATTTACCTGATCACCTATG+GGG | + | chr5_3:43638713-43638732 | None:intergenic | 35.0% | |
| ATTATCTATAAAGCACGGAC+AGG | - | chr5_3:43638751-43638770 | Msa0813140:intron | 35.0% | |
| TTATCTATAAAGCACGGACA+GGG | - | chr5_3:43638752-43638771 | Msa0813140:intron | 35.0% | |
| GTACAACCTTTCAACATGTT+TGG | + | chr5_3:43638892-43638911 | None:intergenic | 35.0% | |
| TCAAGATATGAATGCTCCAT+TGG | - | chr5_3:43639893-43639912 | Msa0813140:intron | 35.0% | |
| AGGAGTTAGAGTAATTGAGT+TGG | - | chr5_3:43640013-43640032 | Msa0813140:intron | 35.0% | |
| !! | GAGTAATTGAGTTGGATTTG+TGG | - | chr5_3:43640021-43640040 | Msa0813140:intron | 35.0% |
| ! | TATATGTGTTGATGTCGTGT+CGG | + | chr5_3:43640172-43640191 | None:intergenic | 35.0% |
| GAGATTGTTTGAATGCCATT+AGG | - | chr5_3:43640422-43640441 | Msa0813140:intron | 35.0% | |
| ATCAAATGCATTGTCCCTAA+TGG | + | chr5_3:43640440-43640459 | None:intergenic | 35.0% | |
| AATGAAGAAATTCCCTTCAC+CGG | - | chr5_3:43640666-43640685 | Msa0813140:CDS | 35.0% | |
| TCTGATTTCAACAAAACCAC+CGG | - | chr5_3:43640708-43640727 | Msa0813140:CDS | 35.0% | |
| !!! | ATCTTTTGGCTTTGACTTTC+AGG | + | chr5_3:43640739-43640758 | None:intergenic | 35.0% |
| ! | CAATGTTCTACACTACCTTT+TGG | + | chr5_3:43641186-43641205 | None:intergenic | 35.0% |
| CAAAAGGTAGTGTAGAACAT+TGG | - | chr5_3:43641184-43641203 | Msa0813140:CDS | 35.0% | |
| ! | TAGTGTAGAACATTGGTTGA+TGG | - | chr5_3:43641191-43641210 | Msa0813140:CDS | 35.0% |
| TGATGGAACATGATCAAGTT+AGG | - | chr5_3:43641208-43641227 | Msa0813140:CDS | 35.0% | |
| AAGAAATCGCCAAAACTCAT+GGG | - | chr5_3:43641259-43641278 | Msa0813140:CDS | 35.0% | |
| TTGACAATTGAGAGAAGAGA+AGG | - | chr5_3:43641750-43641769 | Msa0813140:intron | 35.0% | |
| TGACAATTGAGAGAAGAGAA+GGG | - | chr5_3:43641751-43641770 | Msa0813140:intron | 35.0% | |
| TAAAATGAAGGCAAGGTCTT+AGG | + | chr5_3:43642027-43642046 | None:intergenic | 35.0% | |
| TGTTGGTATGCTATGCAATT+TGG | - | chr5_3:43642053-43642072 | Msa0813140:intron | 35.0% | |
| TTCATGTATACATGGGTGAA+GGG | - | chr5_3:43642492-43642511 | Msa0813140:intron | 35.0% | |
| ATTACCTGTACACGAAAATC+AGG | + | chr5_3:43642563-43642582 | None:intergenic | 35.0% | |
| CTTACCTATACTTAAATCCG+TGG | + | chr5_3:43642649-43642668 | None:intergenic | 35.0% | |
| ATTACGTGTCAATATTGTGC+AGG | - | chr5_3:43643114-43643133 | Msa0813140:intron | 35.0% | |
| ATACAGACACCAAAGTAACT+AGG | - | chr5_3:43643161-43643180 | Msa0813140:intron | 35.0% | |
| TTAACTCCTCATTCCAAACT+GGG | + | chr5_3:43643207-43643226 | None:intergenic | 35.0% | |
| TTTAACTCCTCATTCCAAAC+TGG | + | chr5_3:43643208-43643227 | None:intergenic | 35.0% | |
| GCCAATTCTGGATAAGTTAA+TGG | + | chr5_3:43643235-43643254 | None:intergenic | 35.0% | |
| ! | GTTATTGAACGTGACTTTTC+TGG | - | chr5_3:43643271-43643290 | Msa0813140:CDS | 35.0% |
| GCTTATAAAGTTCACCTTTG+CGG | + | chr5_3:43643375-43643394 | None:intergenic | 35.0% | |
| GTACAATTCATCCATGGTCA+TGG | + | chr5_3:43638535-43638554 | None:intergenic | 40.0% | |
| !! | CATTTTCAAGGAGAAAAGGG+TGG | - | chr5_3:43638567-43638586 | Msa0813140:CDS | 40.0% |
| GCCTTCTTTCGTTATCTCTT+TGG | - | chr5_3:43638675-43638694 | Msa0813140:CDS | 40.0% | |
| AAGGACCCAAACATGTTGAA+AGG | - | chr5_3:43638883-43638902 | Msa0813140:intron | 40.0% | |
| ATACAAATACGGACACGACA+TGG | - | chr5_3:43639465-43639484 | Msa0813140:intron | 40.0% | |
| !!! | TGCATCCTTTTGGCTCTATT+TGG | + | chr5_3:43639804-43639823 | None:intergenic | 40.0% |
| ! | GAAGCACAAATACTTTTCGG+AGG | - | chr5_3:43640108-43640127 | Msa0813140:intron | 40.0% |
| GTTGAAGAGGTGGAGTTATA+TGG | + | chr5_3:43640498-43640517 | None:intergenic | 40.0% | |
| ! | ATTTTCCCCTTCAACGATTC+CGG | + | chr5_3:43640688-43640707 | None:intergenic | 40.0% |
| ! | GAAAGAAGTTGAGTTGCTTG+AGG | - | chr5_3:43640765-43640784 | Msa0813140:CDS | 40.0% |
| TTGCTTGAGGACAAAGATGA+TGG | - | chr5_3:43640778-43640797 | Msa0813140:intron | 40.0% | |
| ! | TGGATCTAGAGTCAATGATG+AGG | - | chr5_3:43640798-43640817 | Msa0813140:intron | 40.0% |
| !! | GCTTATGGGCTAGTTTGTTA+AGG | - | chr5_3:43640844-43640863 | Msa0813140:intron | 40.0% |
| TGAATTGGGTGATGAAAGTG+AGG | - | chr5_3:43641107-43641126 | Msa0813140:CDS | 40.0% | |
| GAAGAAATCGCCAAAACTCA+TGG | - | chr5_3:43641258-43641277 | Msa0813140:CDS | 40.0% | |
| CTCATGGGAATGATATTGTC+AGG | - | chr5_3:43641274-43641293 | Msa0813140:intron | 40.0% | |
| ! | GGTGAATCTAAAGCATGGAA+TGG | + | chr5_3:43641596-43641615 | None:intergenic | 40.0% |
| ! | CTTTGGGTGAATCTAAAGCA+TGG | + | chr5_3:43641601-43641620 | None:intergenic | 40.0% |
| ! | CATGCTTTAGATTCACCCAA+AGG | - | chr5_3:43641599-43641618 | Msa0813140:intron | 40.0% |
| AAGTAGTGTTCTAGTGACAC+TGG | + | chr5_3:43642153-43642172 | None:intergenic | 40.0% | |
| GAAGGAATGTTCAAAGCCAA+TGG | - | chr5_3:43642263-43642282 | Msa0813140:intron | 40.0% | |
| TTCTTTGGTCGGTATACTCT+AGG | + | chr5_3:43642347-43642366 | None:intergenic | 40.0% | |
| ! | CCTGAAGAGTTTTCTTTGGT+CGG | + | chr5_3:43642358-43642377 | None:intergenic | 40.0% |
| GTTCATGTATACATGGGTGA+AGG | - | chr5_3:43642491-43642510 | Msa0813140:intron | 40.0% | |
| GAAATGTGTTTGGCCGAATT+CGG | + | chr5_3:43642525-43642544 | None:intergenic | 40.0% | |
| !! | ACTTTGGTGTCTGTATCAAC+TGG | + | chr5_3:43643157-43643176 | None:intergenic | 40.0% |
| TTCCTTGGTCCTAGTTACTT+TGG | + | chr5_3:43643173-43643192 | None:intergenic | 40.0% | |
| ATGTGTAATAGGGCCAATTC+TGG | + | chr5_3:43643247-43643266 | None:intergenic | 40.0% | |
| ! | TCTGGACAACATGATTTTGC+TGG | - | chr5_3:43643289-43643308 | Msa0813140:CDS | 40.0% |
| CGTATTTGTATCCGTGCTCA+GGG | + | chr5_3:43639456-43639475 | None:intergenic | 45.0% | |
| CCTGAGCACGGATACAAATA+CGG | - | chr5_3:43639454-43639473 | Msa0813140:intron | 45.0% | |
| GATGATGTGGAAGTTCGTCA+TGG | - | chr5_3:43640059-43640078 | Msa0813140:intron | 45.0% | |
| ATGTGGAAGTTCGTCATGGA+GGG | - | chr5_3:43640063-43640082 | Msa0813140:intron | 45.0% | |
| AACCTATGAAGCACGGATGT+CGG | + | chr5_3:43640262-43640281 | None:intergenic | 45.0% | |
| ! | CTTTGACTTTCAGGAGACTC+CGG | + | chr5_3:43640730-43640749 | None:intergenic | 45.0% |
| ATTGGGTGATGAAAGTGAGG+AGG | - | chr5_3:43641110-43641129 | Msa0813140:CDS | 45.0% | |
| ATACATGCTGGGAAGCCAAA+AGG | - | chr5_3:43641168-43641187 | Msa0813140:CDS | 45.0% | |
| ATATCCAAAGGGTTCACGTG+TGG | - | chr5_3:43641636-43641655 | Msa0813140:intron | 45.0% | |
| CCATGCATCCATCCATTCAT+AGG | + | chr5_3:43641679-43641698 | None:intergenic | 45.0% | |
| CCTATGAATGGATGGATGCA+TGG | - | chr5_3:43641676-43641695 | Msa0813140:intron | 45.0% | |
| ATGGATGCATGGAGCTCAAA+TGG | - | chr5_3:43641687-43641706 | Msa0813140:intron | 45.0% | |
| GGAATGTTCAAAGCCAATGG+TGG | - | chr5_3:43642266-43642285 | Msa0813140:intron | 45.0% | |
| !! | TTCAAAGCCAATGGTGGATG+TGG | - | chr5_3:43642272-43642291 | Msa0813140:intron | 45.0% |
| !! | TCAAAGCCAATGGTGGATGT+GGG | - | chr5_3:43642273-43642292 | Msa0813140:intron | 45.0% |
| AACATACCCACATCCACCAT+TGG | + | chr5_3:43642282-43642301 | None:intergenic | 45.0% | |
| CCGACCAAAGAAAACTCTTC+AGG | - | chr5_3:43642355-43642374 | Msa0813140:intron | 45.0% | |
| CTCTTCAGGTAAAGGGAATG+TGG | - | chr5_3:43642369-43642388 | Msa0813140:intron | 45.0% | |
| ATGTATACATGGGTGAAGGG+TGG | - | chr5_3:43642495-43642514 | Msa0813140:intron | 45.0% | |
| ! | TCCACCTGATTTTCGTGTAC+AGG | - | chr5_3:43642556-43642575 | Msa0813140:intron | 45.0% |
| ACCTGTACACGAAAATCAGG+TGG | + | chr5_3:43642560-43642579 | None:intergenic | 45.0% | |
| CGTGTCAATATTGTGCAGGT+TGG | - | chr5_3:43643118-43643137 | Msa0813140:intron | 45.0% | |
| !! | ATTGTGCAGGTTGGTATCCA+TGG | - | chr5_3:43643127-43643146 | Msa0813140:intron | 45.0% |
| CTGTATCAACTGGAACACCA+TGG | + | chr5_3:43643147-43643166 | None:intergenic | 45.0% | |
| CACCAAAGTAACTAGGACCA+AGG | - | chr5_3:43643168-43643187 | Msa0813140:intron | 45.0% | |
| TAGGACCAAGGAAGATGAGT+GGG | - | chr5_3:43643180-43643199 | Msa0813140:CDS | 45.0% | |
| GTTCGTTTGTGTAACCGCAA+AGG | - | chr5_3:43643358-43643377 | Msa0813140:CDS | 45.0% | |
| !!! | TTATTTGATAATAATTTTTT+TGG | + | chr5_3:43639032-43639051 | None:intergenic | 5.0% |
| GATCACCTATGGGGCCATTT+AGG | + | chr5_3:43638704-43638723 | None:intergenic | 50.0% | |
| AAATGGCCCCATAGGTGATC+AGG | - | chr5_3:43638704-43638723 | Msa0813140:CDS | 50.0% | |
| CTATAAAGCACGGACAGGGT+CGG | - | chr5_3:43638756-43638775 | Msa0813140:intron | 50.0% | |
| ! | CCTAGAGTTTTACGGGCCTT+AGG | + | chr5_3:43639428-43639447 | None:intergenic | 50.0% |
| CCTAAGGCCCGTAAAACTCT+AGG | - | chr5_3:43639425-43639444 | Msa0813140:intron | 50.0% | |
| ! | GGCCCGTAAAACTCTAGGAA+CGG | - | chr5_3:43639430-43639449 | Msa0813140:intron | 50.0% |
| ! | GGCCGTTCCTAGAGTTTTAC+GGG | + | chr5_3:43639435-43639454 | None:intergenic | 50.0% |
| ! | GGGCCGTTCCTAGAGTTTTA+CGG | + | chr5_3:43639436-43639455 | None:intergenic | 50.0% |
| CCGTATTTGTATCCGTGCTC+AGG | + | chr5_3:43639457-43639476 | None:intergenic | 50.0% | |
| ! | TATAGGTGACGGTGTCGAGT+CGG | - | chr5_3:43639544-43639563 | Msa0813140:CDS | 50.0% |
| GGATTAGGTGTGGTGTGTTC+TGG | + | chr5_3:43639595-43639614 | None:intergenic | 50.0% | |
| AACACACCACACCTAATCCG+AGG | - | chr5_3:43639596-43639615 | Msa0813140:CDS | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | + | chr5_3:43639616-43639635 | None:intergenic | 50.0% | |
| GGGCACAACTCCTACTTAAC+TGG | - | chr5_3:43639936-43639955 | Msa0813140:intron | 50.0% | |
| GATGTGGAAGTTCGTCATGG+AGG | - | chr5_3:43640062-43640081 | Msa0813140:intron | 50.0% | |
| ! | ATGTGTTGATGTCGTGTCGG+CGG | + | chr5_3:43640169-43640188 | None:intergenic | 50.0% |
| CACGGATGTCGGATACAACA+CGG | + | chr5_3:43640251-43640270 | None:intergenic | 50.0% | |
| ATCCGACATCCGTGCTTCAT+AGG | - | chr5_3:43640257-43640276 | Msa0813140:CDS | 50.0% | |
| TTGGCGACTTTGCGTTGAAG+AGG | + | chr5_3:43640511-43640530 | None:intergenic | 50.0% | |
| CCTTCAACGATTCCGGTGAA+GGG | + | chr5_3:43640681-43640700 | None:intergenic | 50.0% | |
| CCTTCACCGGAATCGTTGAA+GGG | - | chr5_3:43640679-43640698 | Msa0813140:CDS | 50.0% | |
| CTTCACCGGAATCGTTGAAG+GGG | - | chr5_3:43640680-43640699 | Msa0813140:CDS | 50.0% | |
| GAATCCACACGTGAACCCTT+TGG | + | chr5_3:43641643-43641662 | None:intergenic | 50.0% | |
| GAAGGGTGGCAATCCGAATT+CGG | - | chr5_3:43642509-43642528 | Msa0813140:intron | 50.0% | |
| CTAGGACCAAGGAAGATGAG+TGG | - | chr5_3:43643179-43643198 | Msa0813140:CDS | 50.0% | |
| AAGATGAGTGGGTCCCAGTT+TGG | - | chr5_3:43643191-43643210 | Msa0813140:CDS | 50.0% | |
| ! | CCTTCTCTCAGCTCTGATAC+AGG | + | chr5_3:43643328-43643347 | None:intergenic | 50.0% |
| CCTGTATCAGAGCTGAGAGA+AGG | - | chr5_3:43643325-43643344 | Msa0813140:CDS | 50.0% | |
| GGTGACCTAAATGGCCCCAT+AGG | - | chr5_3:43638696-43638715 | Msa0813140:CDS | 55.0% | |
| GGTGTGGTGTGTTCTGGTGT+CGG | + | chr5_3:43639589-43639608 | None:intergenic | 55.0% | |
| ! | GACACTCCTCGGATTAGGTG+TGG | + | chr5_3:43639605-43639624 | None:intergenic | 55.0% |
| ACACGACACGTGTCTGACAC+GGG | + | chr5_3:43640140-43640159 | None:intergenic | 55.0% | |
| GACACGACACGTGTCTGACA+CGG | + | chr5_3:43640141-43640160 | None:intergenic | 55.0% | |
| GCGACTTTGCGTTGAAGAGG+TGG | + | chr5_3:43640508-43640527 | None:intergenic | 55.0% | |
| CCCTTCACCGGAATCGTTGA+AGG | - | chr5_3:43640678-43640697 | Msa0813140:CDS | 55.0% | |
| CCCTTCAACGATTCCGGTGA+AGG | + | chr5_3:43640682-43640701 | None:intergenic | 55.0% | |
| TGACTTTCAGGAGACTCCGG+TGG | + | chr5_3:43640727-43640746 | None:intergenic | 55.0% | |
| GGGTGATGAAAGTGAGGAGG+AGG | - | chr5_3:43641113-43641132 | Msa0813140:CDS | 55.0% | |
| GAGGAGGAGGATGAGACTCT+TGG | - | chr5_3:43641126-43641145 | Msa0813140:CDS | 55.0% | |
| TGGGACCCACTCATCTTCCT+TGG | + | chr5_3:43643188-43643207 | None:intergenic | 55.0% | |
| ! | GTGGGTCCCAGTTTGGAATG+AGG | - | chr5_3:43643198-43643217 | Msa0813140:CDS | 55.0% |
| AATTTAGGCCGTCGCACCCC+CGG | + | chr5_3:43638795-43638814 | None:intergenic | 60.0% | |
| TCTAGGAACGGCCCTGAGCA+CGG | - | chr5_3:43639442-43639461 | Msa0813140:intron | 60.0% | |
| ! | TGACGGTGTCGAGTCGGTGT+CGG | - | chr5_3:43639550-43639569 | Msa0813140:CDS | 60.0% |
| GCACGGACACTCCTCGGATT+AGG | + | chr5_3:43639610-43639629 | None:intergenic | 60.0% | |
| CACGACACGTGTCTGACACG+GGG | + | chr5_3:43640139-43640158 | None:intergenic | 60.0% | |
| ! | TGATGTCGTGTCGGCGGTGT+CGG | + | chr5_3:43640163-43640182 | None:intergenic | 60.0% |
| CGGACACTGACACGTCGACA+CGG | + | chr5_3:43640231-43640250 | None:intergenic | 60.0% | |
| ACAGGGTCGGCCCTAGGCAT+AGG | - | chr5_3:43638769-43638788 | Msa0813140:intron | 65.0% | |
| GGTCGGCCCTAGGCATAGGC+CGG | - | chr5_3:43638773-43638792 | Msa0813140:intron | 70.0% | |
| GTCGGCCCTAGGCATAGGCC+GGG | - | chr5_3:43638774-43638793 | Msa0813140:intron | 70.0% | |
| TCGGCCCTAGGCATAGGCCG+GGG | - | chr5_3:43638775-43638794 | Msa0813140:intron | 70.0% | |
| GCACCCCCGGCCTATGCCTA+GGG | + | chr5_3:43638782-43638801 | None:intergenic | 70.0% | |
| GCACGGACAGGGTCGGCCCT+AGG | - | chr5_3:43638763-43638782 | Msa0813140:intron | 75.0% | |
| CGGCCCTAGGCATAGGCCGG+GGG | - | chr5_3:43638776-43638795 | Msa0813140:intron | 75.0% | |
| CGCACCCCCGGCCTATGCCT+AGG | + | chr5_3:43638783-43638802 | None:intergenic | 75.0% | |
| ! | GGCATAGGCCGGGGGTGCGA+CGG | - | chr5_3:43638784-43638803 | Msa0813140:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 43638340 | 43643555 | 43638340 | ID=Msa0813140;Name=Msa0813140 |
| chr5_3 | mRNA | 43638340 | 43643555 | 43638340 | ID=Msa0813140-mRNA-1;Parent=Msa0813140;Name=Msa0813140-mRNA-1;_AED=0.12;_eAED=0.12;_QI=35|1|1|1|1|1|9|120|575 |
| chr5_3 | exon | 43638340 | 43638759 | 43638340 | ID=Msa0813140-mRNA-1:exon:13443;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43639318 | 43639404 | 43639318 | ID=Msa0813140-mRNA-1:exon:13442;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43639519 | 43639659 | 43639519 | ID=Msa0813140-mRNA-1:exon:13441;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43640169 | 43640286 | 43640169 | ID=Msa0813140-mRNA-1:exon:13440;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43640600 | 43640790 | 43640600 | ID=Msa0813140-mRNA-1:exon:13439;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43641076 | 43641282 | 43641076 | ID=Msa0813140-mRNA-1:exon:13438;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43641364 | 43641499 | 43641364 | ID=Msa0813140-mRNA-1:exon:13437;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43641811 | 43642007 | 43641811 | ID=Msa0813140-mRNA-1:exon:13436;Parent=Msa0813140-mRNA-1 |
| chr5_3 | exon | 43643170 | 43643555 | 43643170 | ID=Msa0813140-mRNA-1:exon:13435;Parent=Msa0813140-mRNA-1 |
| chr5_3 | five_prime_UTR | 43643521 | 43643555 | 43643521 | ID=Msa0813140-mRNA-1:five_prime_utr;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43643170 | 43643520 | 43643170 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43641811 | 43642007 | 43641811 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43641364 | 43641499 | 43641364 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43641076 | 43641282 | 43641076 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43640600 | 43640790 | 43640600 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43640169 | 43640286 | 43640169 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43639519 | 43639659 | 43639519 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43639318 | 43639404 | 43639318 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | CDS | 43638460 | 43638759 | 43638460 | ID=Msa0813140-mRNA-1:cds;Parent=Msa0813140-mRNA-1 |
| chr5_3 | three_prime_UTR | 43638340 | 43638459 | 43638340 | ID=Msa0813140-mRNA-1:three_prime_utr;Parent=Msa0813140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
