Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734260 | XP_003615686.1 | 93.818 | 550 | 32 | 2 | 43 | 591 | 27 | 575 | 0.0 | 1041 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734260 | sp|Q39032|PLCD1_ARATH | 55.191 | 549 | 231 | 7 | 46 | 586 | 15 | 556 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734260 | G7JZH5 | 93.818 | 550 | 32 | 2 | 43 | 591 | 27 | 575 | 0.0 | 1041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0734260 | Msa0742650 | 0.803542 | 3.316373e-49 | -8.615850e-47 |
| Msa0734260 | Msa0813140 | 0.819677 | 1.024240e-52 | -8.615850e-47 |
| Msa0734260 | Msa0853600 | 0.848260 | 6.862977e-60 | -8.615850e-47 |
| Msa0734260 | Msa1113800 | 0.805592 | 1.239011e-49 | -8.615850e-47 |
| Msa0734260 | Msa1160500 | 0.802729 | 4.885842e-49 | -8.615850e-47 |
| Msa0734260 | Msa1284120 | 0.827914 | 1.202574e-54 | -8.615850e-47 |
| Msa0164400 | Msa0734260 | 0.810419 | 1.163732e-50 | -8.615850e-47 |
| Msa0194820 | Msa0734260 | 0.817171 | 3.786969e-52 | -8.615850e-47 |
| Msa0194840 | Msa0734260 | 0.813616 | 2.338678e-51 | -8.615850e-47 |
| Msa0388770 | Msa0734260 | 0.803879 | 2.823373e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734260 | MtrunA17_Chr5g0430191 | 93.818 | 550 | 32 | 2 | 43 | 591 | 27 | 575 | 0.0 | 1041 |
| Msa0734260 | MtrunA17_Chr5g0437081 | 52.151 | 581 | 232 | 12 | 46 | 588 | 16 | 588 | 0.0 | 587 |
| Msa0734260 | MtrunA17_Chr5g0430181 | 52.821 | 585 | 229 | 11 | 46 | 588 | 14 | 593 | 0.0 | 587 |
| Msa0734260 | MtrunA17_Chr3g0113531 | 52.778 | 576 | 236 | 9 | 46 | 588 | 20 | 592 | 0.0 | 574 |
| Msa0734260 | MtrunA17_Chr3g0112551 | 50.780 | 577 | 237 | 9 | 47 | 588 | 7 | 571 | 0.0 | 548 |
| Msa0734260 | MtrunA17_Chr3g0113521 | 48.527 | 577 | 254 | 14 | 47 | 588 | 18 | 586 | 9.49e-178 | 515 |
| Msa0734260 | MtrunA17_Chr5g0437041 | 46.346 | 602 | 274 | 12 | 35 | 588 | 6 | 606 | 1.24e-176 | 513 |
| Msa0734260 | MtrunA17_Chr5g0437061 | 52.738 | 493 | 191 | 7 | 138 | 589 | 1 | 492 | 3.27e-174 | 503 |
| Msa0734260 | MtrunA17_Chr3g0113471 | 47.743 | 576 | 262 | 13 | 47 | 588 | 17 | 587 | 1.79e-171 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734260 | AT5G58670.1 | 55.191 | 549 | 231 | 7 | 46 | 586 | 15 | 556 | 0.0 | 598 |
| Msa0734260 | AT3G08510.2 | 53.633 | 578 | 220 | 10 | 46 | 588 | 16 | 580 | 0.0 | 595 |
| Msa0734260 | AT3G08510.1 | 53.633 | 578 | 220 | 10 | 46 | 588 | 16 | 580 | 0.0 | 595 |
| Msa0734260 | AT4G38530.1 | 54.479 | 547 | 237 | 10 | 46 | 586 | 15 | 555 | 0.0 | 580 |
| Msa0734260 | AT3G55940.1 | 51.923 | 572 | 242 | 7 | 46 | 588 | 16 | 583 | 0.0 | 580 |
| Msa0734260 | AT2G40116.1 | 50.676 | 592 | 245 | 9 | 41 | 588 | 24 | 612 | 0.0 | 563 |
| Msa0734260 | AT5G58700.3 | 50.432 | 579 | 249 | 12 | 46 | 588 | 20 | 596 | 0.0 | 546 |
| Msa0734260 | AT5G58700.1 | 50.432 | 579 | 249 | 12 | 46 | 588 | 20 | 596 | 0.0 | 546 |
| Msa0734260 | AT3G08510.4 | 51.045 | 574 | 212 | 10 | 46 | 588 | 16 | 551 | 0.0 | 545 |
| Msa0734260 | AT3G08510.3 | 51.045 | 574 | 212 | 10 | 46 | 588 | 16 | 551 | 0.0 | 545 |
| Msa0734260 | AT5G58690.2 | 48.022 | 556 | 266 | 10 | 53 | 588 | 6 | 558 | 5.16e-176 | 510 |
| Msa0734260 | AT5G58690.3 | 47.425 | 563 | 273 | 10 | 46 | 588 | 18 | 577 | 5.89e-176 | 511 |
| Msa0734260 | AT5G58690.1 | 47.425 | 563 | 273 | 10 | 46 | 588 | 18 | 577 | 5.89e-176 | 511 |
| Msa0734260 | AT5G58700.2 | 54.209 | 487 | 189 | 9 | 134 | 588 | 4 | 488 | 1.39e-174 | 504 |
| Msa0734260 | AT3G47290.1 | 38.889 | 540 | 289 | 14 | 59 | 589 | 24 | 531 | 7.09e-115 | 352 |
| Msa0734260 | AT3G47290.2 | 38.662 | 538 | 289 | 14 | 59 | 587 | 24 | 529 | 8.01e-111 | 343 |
| Msa0734260 | AT3G47220.1 | 38.339 | 566 | 285 | 19 | 46 | 589 | 8 | 531 | 1.08e-104 | 326 |
Find 132 sgRNAs with CRISPR-Local
Find 491 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGATGTGAATAATT+TGG | 0.150823 | 5_1:-48004025 | None:intergenic |
| ACATCATCTTCTCTAGAATT+TGG | 0.156414 | 5_1:-48003417 | None:intergenic |
| CTTCTTCCTCTTGTATCTTT+TGG | 0.161223 | 5_1:-48004126 | None:intergenic |
| TGGGCATTATCTTCAATTTA+TGG | 0.203485 | 5_1:+48005654 | Msa0734260:CDS |
| TGCAATTAATTAGGATGAAT+TGG | 0.230610 | 5_1:+48004462 | Msa0734260:intron |
| GCCTTCTTTCGTTATCTCTT+TGG | 0.233212 | 5_1:+48002614 | Msa0734260:CDS |
| AGTGATTAGAAAATCGAAAT+TGG | 0.251999 | 5_1:-48008736 | None:intergenic |
| AAAATATTGTTGATTTCTTC+TGG | 0.260165 | 5_1:-48002425 | None:intergenic |
| TCCATTCATAGGATCATAAT+TGG | 0.264986 | 5_1:-48005049 | None:intergenic |
| GAAGGGTGGCAATCTGAATT+TGG | 0.278897 | 5_1:+48005932 | Msa0734260:CDS |
| CAATGTTCTACACTACCTTT+TGG | 0.288622 | 5_1:-48004553 | None:intergenic |
| GCCAATTCTGGATAAGTTAA+TGG | 0.289150 | 5_1:-48008557 | None:intergenic |
| AATATCATTCCCATGAGTTT+TGG | 0.294974 | 5_1:-48004638 | None:intergenic |
| GTGAACTTTATAAGCATGTT+AGG | 0.306118 | 5_1:+48008705 | Msa0734260:CDS |
| TCCATTAACTTATCCAGAAT+TGG | 0.320745 | 5_1:+48008556 | Msa0734260:CDS |
| GAGATTGTTTGAATGCCATT+AGG | 0.322747 | 5_1:+48003798 | Msa0734260:CDS |
| GATCACCTATGGGGCCATTT+AGG | 0.326314 | 5_1:-48002640 | None:intergenic |
| TATCTCTTTGGTGACCTAAA+TGG | 0.326337 | 5_1:+48002626 | Msa0734260:CDS |
| ATGTGTAAGAGGGCCAATTC+TGG | 0.338302 | 5_1:-48008569 | None:intergenic |
| GGGCACAACTCCTACTTAAC+TGG | 0.341408 | 5_1:+48003309 | Msa0734260:CDS |
| TTTAACTCCTCATTCCAAAC+TGG | 0.342152 | 5_1:-48008530 | None:intergenic |
| TCTTCAAAAGTTATTATAAC+AGG | 0.350189 | 5_1:-48003848 | None:intergenic |
| ATATTCTAAGCAAATTCCTT+TGG | 0.356443 | 5_1:-48004999 | None:intergenic |
| AGATTGTTTGAATGCCATTA+GGG | 0.371595 | 5_1:+48003799 | Msa0734260:CDS |
| GTTGAAGAGGTGGAGTTATA+TGG | 0.372195 | 5_1:-48003871 | None:intergenic |
| GCAATTAATTAGGATGAATT+GGG | 0.377967 | 5_1:+48004463 | Msa0734260:intron |
| TATTCTAAGCAAATTCCTTT+GGG | 0.392694 | 5_1:-48004998 | None:intergenic |
| TTCCTTGGTCCTAGTTACTT+TGG | 0.400047 | 5_1:-48008495 | None:intergenic |
| AAGATGAGTGGGTCCCAGTT+TGG | 0.404309 | 5_1:+48008516 | Msa0734260:CDS |
| CCTTCTCTTAGCTCTGATAC+AGG | 0.409379 | 5_1:-48008650 | None:intergenic |
| CATTTGTAATTGTATTATGA+AGG | 0.409411 | 5_1:+48008766 | Msa0734260:three_prime_UTR |
| CAATAACTTTAATGTGTAAG+AGG | 0.410043 | 5_1:-48008580 | None:intergenic |
| TTCTTTGGTCGGTATACTCT+AGG | 0.420475 | 5_1:-48005757 | None:intergenic |
| CCCTTCAACGATTCTGGTGA+AGG | 0.423001 | 5_1:-48004055 | None:intergenic |
| ATCAAATGCATTGTCCCTAA+TGG | 0.423947 | 5_1:-48003813 | None:intergenic |
| TCCAATTATGATCCTATGAA+TGG | 0.426154 | 5_1:+48005048 | Msa0734260:CDS |
| CCATGCATCCATCCATTCAT+AGG | 0.428096 | 5_1:-48005060 | None:intergenic |
| GCTTATAAAGTTCACCTTTG+CGG | 0.428659 | 5_1:-48008697 | None:intergenic |
| CAATTGATTTCCAGTTAAGT+AGG | 0.432841 | 5_1:-48003319 | None:intergenic |
| AAAATTTACCTGATCACCTA+TGG | 0.438210 | 5_1:-48002651 | None:intergenic |
| CCGACCAAAGAAAACTCTTC+AGG | 0.446765 | 5_1:+48005768 | Msa0734260:CDS |
| ATTACCTGTACACGAAAATC+AGG | 0.452444 | 5_1:-48005983 | None:intergenic |
| AATTTGATTTCTATACATGC+TGG | 0.454192 | 5_1:+48004526 | Msa0734260:CDS |
| AAATGGCCCCATAGGTGATC+AGG | 0.455038 | 5_1:+48002643 | Msa0734260:CDS |
| ACTTTGGTGACTGTATCAAC+TGG | 0.457857 | 5_1:-48008479 | None:intergenic |
| TGATGGAACATGATCAAGTT+AGG | 0.457893 | 5_1:+48004578 | Msa0734260:CDS |
| TTATTGTTCAATAAGATGTC+AGG | 0.460630 | 5_1:-48005721 | None:intergenic |
| TAGAGTTACGTTCAAGGAAA+GGG | 0.463508 | 5_1:+48001036 | Msa0734260:CDS |
| GAATCCACACGTGAACCCTT+TGG | 0.470657 | 5_1:-48005024 | None:intergenic |
| AATGGTAGCATTTAATATGC+AGG | 0.472930 | 5_1:+48005089 | Msa0734260:CDS |
| CAATAGAATGTTTAAGCTCA+AGG | 0.474052 | 5_1:+48002391 | Msa0734260:intron |
| AAAACAGGTTCACGTATACA+TGG | 0.475250 | 5_1:+48005907 | Msa0734260:intron |
| CCCTTCACCAGAATCGTTGA+AGG | 0.478338 | 5_1:+48004054 | Msa0734260:CDS |
| CTCATGGGAATGATATTGTC+AGG | 0.481646 | 5_1:+48004644 | Msa0734260:CDS |
| GAGTAATTGAGTTGGATTTG+TGG | 0.483851 | 5_1:+48003394 | Msa0734260:CDS |
| AGGAGTTAGAGTAATTGAGT+TGG | 0.488235 | 5_1:+48003386 | Msa0734260:CDS |
| GAGGAGGAGGATGAGACTCT+TGG | 0.488999 | 5_1:+48004496 | Msa0734260:CDS |
| GAAGAAATCGCCAAAACTCA+TGG | 0.491346 | 5_1:+48004628 | Msa0734260:CDS |
| TTCAAAGCCAATGGTGGATG+TGG | 0.497499 | 5_1:+48005685 | Msa0734260:CDS |
| TAGTGTAGAACATTGGTTGA+TGG | 0.502502 | 5_1:+48004561 | Msa0734260:CDS |
| ATGGTGGATGATATATTTAG+AGG | 0.505987 | 5_1:+48003989 | Msa0734260:CDS |
| AACATACCCACATCCACCAT+TGG | 0.508710 | 5_1:-48005692 | None:intergenic |
| TCAAGATATGAATGCTCCAT+TGG | 0.508763 | 5_1:+48003266 | Msa0734260:CDS |
| ATTATGCAGGTTGGTATCCA+TGG | 0.514838 | 5_1:+48008452 | Msa0734260:intron |
| TGGGACCCACTCATCTTCCT+TGG | 0.515917 | 5_1:-48008510 | None:intergenic |
| CTCAATATATTTCAAAGAAG+AGG | 0.516565 | 5_1:+48002578 | Msa0734260:CDS |
| TATTATAACAGGATACTTTG+AGG | 0.519500 | 5_1:-48003837 | None:intergenic |
| GCGACTTTGCGTTGAAGAGG+TGG | 0.519693 | 5_1:-48003881 | None:intergenic |
| CTTTGACTTTCAGGAGACTC+CGG | 0.522060 | 5_1:-48004103 | None:intergenic |
| CATTATCTTCAATTTATGGA+AGG | 0.529543 | 5_1:+48005658 | Msa0734260:CDS |
| TTAGAGTTACGTTCAAGGAA+AGG | 0.533004 | 5_1:+48001035 | Msa0734260:CDS |
| TTGCTTAGAATATATCCAAA+GGG | 0.535506 | 5_1:+48005009 | Msa0734260:CDS |
| ATACATGCTGGGAAGCCAAA+AGG | 0.535904 | 5_1:+48004538 | Msa0734260:CDS |
| TTTGATTTCAACAAAACCAC+CGG | 0.541046 | 5_1:+48004084 | Msa0734260:CDS |
| ATGGATGCATGGAGCTCAAA+TGG | 0.541893 | 5_1:+48005071 | Msa0734260:CDS |
| AAATTTACCTGATCACCTAT+GGG | 0.546547 | 5_1:-48002650 | None:intergenic |
| AATAACTTTAATGTGTAAGA+GGG | 0.554394 | 5_1:-48008579 | None:intergenic |
| GGTGACCTAAATGGCCCCAT+AGG | 0.558499 | 5_1:+48002635 | Msa0734260:CDS |
| ATTTGATTTCTATACATGCT+GGG | 0.559181 | 5_1:+48004527 | Msa0734260:CDS |
| ACCAAAGAGATAACGAAAGA+AGG | 0.560155 | 5_1:-48002615 | None:intergenic |
| TTGCTTGAGGACAAAGATGA+TGG | 0.561570 | 5_1:+48004154 | Msa0734260:CDS |
| AGGGCTGAAGATATTGATAA+CGG | 0.567509 | 5_1:+48001055 | Msa0734260:CDS |
| CCTTCAACGATTCTGGTGAA+GGG | 0.570918 | 5_1:-48004054 | None:intergenic |
| CATGCTTTAGATTCACCCAA+AGG | 0.572447 | 5_1:+48004983 | Msa0734260:intron |
| GGAAGAAGTTGAGTTGCTTG+AGG | 0.573929 | 5_1:+48004141 | Msa0734260:CDS |
| GGGTGATGAAAGTGAGGAGG+AGG | 0.575323 | 5_1:+48004483 | Msa0734260:CDS |
| TTTGCTTAGAATATATCCAA+AGG | 0.575916 | 5_1:+48005008 | Msa0734260:CDS |
| AAGAAATCGCCAAAACTCAT+GGG | 0.576013 | 5_1:+48004629 | Msa0734260:CDS |
| TTGGCGACTTTGCGTTGAAG+AGG | 0.577736 | 5_1:-48003884 | None:intergenic |
| CAGCGACATACAACTGTCCA+TGG | 0.581262 | 5_1:-48001009 | None:intergenic |
| TTAACTCCTCATTCCAAACT+GGG | 0.583535 | 5_1:-48008529 | None:intergenic |
| ATTATGATCCTATGAATGGA+TGG | 0.583921 | 5_1:+48005052 | Msa0734260:CDS |
| CCTTCACCAGAATCGTTGAA+GGG | 0.585970 | 5_1:+48004055 | Msa0734260:CDS |
| ATGTGGAAGTTCGTCATGGA+GGG | 0.587464 | 5_1:+48003436 | Msa0734260:CDS |
| ATTCATAGGATCATAATTGG+AGG | 0.587604 | 5_1:-48005046 | None:intergenic |
| GACAACTAACGTCGTATACG+AGG | 0.589371 | 5_1:+48001103 | Msa0734260:CDS |
| GTGGGTCCCAGTTTGGAATG+AGG | 0.590724 | 5_1:+48008523 | Msa0734260:CDS |
| CACCAAAGTAACTAGGACCA+AGG | 0.591110 | 5_1:+48008493 | Msa0734260:CDS |
| CAAAAGGTAGTGTAGAACAT+TGG | 0.592726 | 5_1:+48004554 | Msa0734260:CDS |
| TCAAAGCCAAAAGATACAAG+AGG | 0.594050 | 5_1:+48004120 | Msa0734260:CDS |
| GAAGGAATGTTCAAAGCCAA+TGG | 0.594868 | 5_1:+48005676 | Msa0734260:CDS |
| AAAGTAGTACAATTCATCCA+TGG | 0.596287 | 5_1:-48002477 | None:intergenic |
| TGACTGAGGTACATAGAAAG+AGG | 0.597694 | 5_1:+48008889 | Msa0734260:three_prime_UTR |
| ATACAGTCACCAAAGTAACT+AGG | 0.599754 | 5_1:+48008486 | Msa0734260:CDS |
| CCTATGAATGGATGGATGCA+TGG | 0.600723 | 5_1:+48005060 | Msa0734260:CDS |
| ATATTGTTGATTTCTTCTGG+TGG | 0.604922 | 5_1:-48002422 | None:intergenic |
| GTACAATTCATCCATGGTCA+TGG | 0.605855 | 5_1:-48002471 | None:intergenic |
| CCTGTATCAGAGCTAAGAGA+AGG | 0.616213 | 5_1:+48008650 | Msa0734260:CDS |
| TTCACGTATACATGGGTGAA+GGG | 0.619188 | 5_1:+48005915 | Msa0734260:CDS |
| GTTCACGTATACATGGGTGA+AGG | 0.619514 | 5_1:+48005914 | Msa0734260:CDS |
| TAGGACCAAGGAAGATGAGT+GGG | 0.620046 | 5_1:+48008505 | Msa0734260:CDS |
| CTTCACCAGAATCGTTGAAG+GGG | 0.622267 | 5_1:+48004056 | Msa0734260:CDS |
| ATATCCAAAGGGTTCACGTG+TGG | 0.629079 | 5_1:+48005020 | Msa0734260:CDS |
| TGACTTTCAGGAGACTCCGG+TGG | 0.638079 | 5_1:-48004100 | None:intergenic |
| GATGATGTGGAAGTTCGTCA+TGG | 0.639310 | 5_1:+48003432 | Msa0734260:CDS |
| GGAATGTTCAAAGCCAATGG+TGG | 0.642892 | 5_1:+48005679 | Msa0734260:CDS |
| TGAATTGGGTGATGAAAGTG+AGG | 0.645890 | 5_1:+48004477 | Msa0734260:CDS |
| CTGTATCAACTGGAACACCA+TGG | 0.646258 | 5_1:-48008469 | None:intergenic |
| GTTCGTTTGTGTAACCGCAA+AGG | 0.648872 | 5_1:+48008683 | Msa0734260:CDS |
| AAATTCTAGAGAAGATGATG+TGG | 0.650989 | 5_1:+48003419 | Msa0734260:CDS |
| TGAACTATCTTTAATGACTG+AGG | 0.653079 | 5_1:+48008875 | Msa0734260:three_prime_UTR |
| ACGTATACATGGGTGAAGGG+TGG | 0.667080 | 5_1:+48005918 | Msa0734260:CDS |
| AAACAGGTTCACGTATACAT+GGG | 0.673316 | 5_1:+48005908 | Msa0734260:intron |
| ACCTGTACACGAAAATCAGG+CGG | 0.673633 | 5_1:-48005980 | None:intergenic |
| GATGTGGAAGTTCGTCATGG+AGG | 0.680496 | 5_1:+48003435 | Msa0734260:CDS |
| CTAGGACCAAGGAAGATGAG+TGG | 0.682226 | 5_1:+48008504 | Msa0734260:CDS |
| TCAAAGCCAATGGTGGATGT+GGG | 0.703468 | 5_1:+48005686 | Msa0734260:CDS |
| TGGATCTAGAGTCAATGATG+AGG | 0.706973 | 5_1:+48004174 | Msa0734260:CDS |
| ATTGGGTGATGAAAGTGAGG+AGG | 0.710688 | 5_1:+48004480 | Msa0734260:CDS |
| ATATTGATAACGGATGAAGA+CGG | 0.718879 | 5_1:+48001065 | Msa0734260:CDS |
| AATTTACCTGATCACCTATG+GGG | 0.721386 | 5_1:-48002649 | None:intergenic |
| TAGAATGTTTAAGCTCAAGG+TGG | 0.727418 | 5_1:+48002394 | Msa0734260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATGATTTTATTTTCTA+TGG | - | chr5_1:48001276-48001295 | None:intergenic | 10.0% |
| !!! | AAATCAACAATATTTTTAAT+AGG | + | chr5_1:48002432-48002451 | Msa0734260:CDS | 10.0% |
| !! | ATATATAATTGTAATTGTTA+AGG | - | chr5_1:48003223-48003242 | None:intergenic | 10.0% |
| !!! | ATATTTGAATTTTTTATTTC+AGG | + | chr5_1:48003239-48003258 | Msa0734260:intron | 10.0% |
| !! | TGAATTTGATAAATAATTTA+GGG | + | chr5_1:48004256-48004275 | Msa0734260:intron | 10.0% |
| !!! | CTTTTTAATTTAAAAAACAA+AGG | + | chr5_1:48004349-48004368 | Msa0734260:intron | 10.0% |
| !!! | AATATTTTTTGCAATTAATT+AGG | + | chr5_1:48004453-48004472 | Msa0734260:intron | 10.0% |
| !! | TTAAATATAAGAAGTAAATT+AGG | + | chr5_1:48005250-48005269 | Msa0734260:intron | 10.0% |
| !! | CCAAATTTATAAATAAATAA+AGG | - | chr5_1:48005497-48005516 | None:intergenic | 10.0% |
| !!! | CCTTTATTTATTTATAAATT+TGG | + | chr5_1:48005494-48005513 | Msa0734260:intron | 10.0% |
| !!! | ATTAATTTTGTTTTACTTAA+AGG | + | chr5_1:48005627-48005646 | Msa0734260:intron | 10.0% |
| !!! | TTAATTTTGTTTTACTTAAA+GGG | + | chr5_1:48005628-48005647 | Msa0734260:intron | 10.0% |
| !!! | TATTTTATATTAGATATACT+TGG | - | chr5_1:48005876-48005895 | None:intergenic | 10.0% |
| !!! | TAAATATTTGAAATAATTTG+TGG | - | chr5_1:48006302-48006321 | None:intergenic | 10.0% |
| !!! | ATAATTGGTAATAATTTAAA+GGG | + | chr5_1:48007305-48007324 | Msa0734260:intron | 10.0% |
| !! | TTTAATAAATAGGTATTAAT+AGG | - | chr5_1:48007516-48007535 | None:intergenic | 10.0% |
| !! | AAAAAATGATGTGAAATATA+AGG | - | chr5_1:48001637-48001656 | None:intergenic | 15.0% |
| !! | ATAATTATCTACTTAAAGTA+AGG | - | chr5_1:48001726-48001745 | None:intergenic | 15.0% |
| !! | TCAAATACTACAAATTTAAT+CGG | + | chr5_1:48002939-48002958 | Msa0734260:intron | 15.0% |
| !!! | AAAAGATATATGTATGTTTT+TGG | - | chr5_1:48003187-48003206 | None:intergenic | 15.0% |
| !!! | AAAAACATACATATATCTTT+TGG | + | chr5_1:48003186-48003205 | Msa0734260:intron | 15.0% |
| !!! | TTTTTAAAAATCGCATAATT+TGG | - | chr5_1:48003577-48003596 | None:intergenic | 15.0% |
| !! | ATTAATATTTATAATGCAGA+TGG | + | chr5_1:48003970-48003989 | Msa0734260:intron | 15.0% |
| !! | GTGAATTTGATAAATAATTT+AGG | + | chr5_1:48004255-48004274 | Msa0734260:intron | 15.0% |
| !!! | TAAAAAAAAAGTGTAACAAA+TGG | + | chr5_1:48004384-48004403 | Msa0734260:intron | 15.0% |
| !!! | TCAATTATTTTTAATGTAGT+TGG | + | chr5_1:48004715-48004734 | Msa0734260:intron | 15.0% |
| !! | TTGTTTGAATGAAAAAAAAT+AGG | - | chr5_1:48004773-48004792 | None:intergenic | 15.0% |
| !! | GTAACAATTAATTAACAATA+GGG | - | chr5_1:48004942-48004961 | None:intergenic | 15.0% |
| !! | TGTAACAATTAATTAACAAT+AGG | - | chr5_1:48004943-48004962 | None:intergenic | 15.0% |
| !!! | ATTATGAAAATAGTTTTCTT+AGG | - | chr5_1:48005386-48005405 | None:intergenic | 15.0% |
| !! | ATAGAAATAAATAAAGTTTG+AGG | + | chr5_1:48005519-48005538 | Msa0734260:intron | 15.0% |
| !!! | TCCATTTCTTATTTATTAAT+TGG | + | chr5_1:48005593-48005612 | Msa0734260:intron | 15.0% |
| !!! | GATAATTGGTAATAATTTAA+AGG | + | chr5_1:48007304-48007323 | Msa0734260:intron | 15.0% |
| !!! | TAATTGGTAATAATTTAAAG+GGG | + | chr5_1:48007306-48007325 | Msa0734260:intron | 15.0% |
| !!! | CTTATTGCAAAAATATTTTC+AGG | - | chr5_1:48001376-48001395 | None:intergenic | 20.0% |
| !! | CTTGTATTATGTCTTTATAT+TGG | - | chr5_1:48002206-48002225 | None:intergenic | 20.0% |
| !!! | AAAATATTGTTGATTTCTTC+TGG | - | chr5_1:48002428-48002447 | None:intergenic | 20.0% |
| !! | TTTAATAGGTATGCAAAAAA+TGG | + | chr5_1:48002446-48002465 | Msa0734260:CDS | 20.0% |
| !!! | TACTTTTTAGTTGATTTTCA+AGG | + | chr5_1:48002494-48002513 | Msa0734260:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr5_1:48002751-48002770 | None:intergenic | 20.0% |
| !! | ACATAATTCAGTGTAATTAT+AGG | + | chr5_1:48002770-48002789 | Msa0734260:intron | 20.0% |
| !!! | TTTTCAGAGCTTTTATTATT+GGG | - | chr5_1:48003365-48003384 | None:intergenic | 20.0% |
| !!! | TTTTTCAGAGCTTTTATTAT+TGG | - | chr5_1:48003366-48003385 | None:intergenic | 20.0% |
| !!! | ATAATAAAAGCTCTGAAAAA+AGG | + | chr5_1:48003366-48003385 | Msa0734260:CDS | 20.0% |
| !! | TTATATATAAAGCTGAAAGT+TGG | - | chr5_1:48003720-48003739 | None:intergenic | 20.0% |
| !! | TCTTCAAAAGTTATTATAAC+AGG | - | chr5_1:48003851-48003870 | None:intergenic | 20.0% |
| !!! | TTTTAGACTATGATATATAG+TGG | - | chr5_1:48003938-48003957 | None:intergenic | 20.0% |
| !! | TTCATTTGATGTGAATAATT+TGG | - | chr5_1:48004028-48004047 | None:intergenic | 20.0% |
| !!! | ATTTAATTTCACTTTGCTTA+TGG | + | chr5_1:48004205-48004224 | Msa0734260:intron | 20.0% |
| !!! | TTTAATTTCACTTTGCTTAT+GGG | + | chr5_1:48004206-48004225 | Msa0734260:intron | 20.0% |
| !!! | ACTTTGAAGTACATATTTAT+AGG | - | chr5_1:48004326-48004345 | None:intergenic | 20.0% |
| !! | TTATACTTCAATACTTGTAT+AGG | + | chr5_1:48004816-48004835 | Msa0734260:intron | 20.0% |
| !! | TATACTTCAATACTTGTATA+GGG | + | chr5_1:48004817-48004836 | Msa0734260:intron | 20.0% |
| !!! | GTTTTATAATAACTTCCAAA+AGG | + | chr5_1:48005216-48005235 | Msa0734260:intron | 20.0% |
| !!! | TTAATTATAAGTTGACCTTT+TGG | - | chr5_1:48005234-48005253 | None:intergenic | 20.0% |
| !!! | AATGTTACATTCTTAGTTTT+AGG | - | chr5_1:48005294-48005313 | None:intergenic | 20.0% |
| !!! | ACTATTTTCATAATCACATA+TGG | + | chr5_1:48005392-48005411 | Msa0734260:intron | 20.0% |
| !! | ATAAATAAATAAAGGAAAGC+AGG | - | chr5_1:48005489-48005508 | None:intergenic | 20.0% |
| !! | GCCAATTAATAAATAAGAAA+TGG | - | chr5_1:48005597-48005616 | None:intergenic | 20.0% |
| !! | AATAAAAATCAAAGTGTGTT+TGG | - | chr5_1:48005958-48005977 | None:intergenic | 20.0% |
| !! | AATGACACATTGATATAATT+AGG | + | chr5_1:48006404-48006423 | Msa0734260:intron | 20.0% |
| !! | ATGACACATTGATATAATTA+GGG | + | chr5_1:48006405-48006424 | Msa0734260:intron | 20.0% |
| !! | ATCAAAAGCTAATAAACTAA+CGG | + | chr5_1:48006788-48006807 | Msa0734260:intron | 20.0% |
| !! | AAATATCAGTAATATTAGAC+AGG | + | chr5_1:48006915-48006934 | Msa0734260:intron | 20.0% |
| !! | AATATCAGTAATATTAGACA+GGG | + | chr5_1:48006916-48006935 | Msa0734260:intron | 20.0% |
| !!! | ATAGAAAAACACTTGATAAT+TGG | + | chr5_1:48007290-48007309 | Msa0734260:intron | 20.0% |
| !! | ATATCAACAAAACATGTTAA+AGG | - | chr5_1:48007607-48007626 | None:intergenic | 20.0% |
| !!! | TTAACATGTTTTGTTGATAT+AGG | + | chr5_1:48007607-48007626 | Msa0734260:intron | 20.0% |
| !! | AAATTTACTTGTAGTGAAAT+AGG | + | chr5_1:48007656-48007675 | Msa0734260:intron | 20.0% |
| !! | AATGACTTCACAATTATATA+GGG | - | chr5_1:48007922-48007941 | None:intergenic | 20.0% |
| !! | TAATGACTTCACAATTATAT+AGG | - | chr5_1:48007923-48007942 | None:intergenic | 20.0% |
| !!! | ACAAATAGTACATTTTAGTT+CGG | + | chr5_1:48008367-48008386 | Msa0734260:intron | 20.0% |
| !! | AATAACTTTAATGTGTAAGA+GGG | - | chr5_1:48008582-48008601 | None:intergenic | 20.0% |
| !! | CATTTGTAATTGTATTATGA+AGG | + | chr5_1:48008766-48008785 | Msa0734260:three_prime_UTR | 20.0% |
| ! | TATGATAACTAAATTGAACG+TGG | - | chr5_1:48001253-48001272 | None:intergenic | 25.0% |
| ! | TCTACTTTCATCTAATTCTA+AGG | + | chr5_1:48001751-48001770 | Msa0734260:intron | 25.0% |
| ! | CTACTTTCATCTAATTCTAA+GGG | + | chr5_1:48001752-48001771 | Msa0734260:intron | 25.0% |
| ! | ATAGACTCTGATATCAATAT+TGG | - | chr5_1:48002113-48002132 | None:intergenic | 25.0% |
| !!! | TGTTGTGTTTTAAGATTATC+AGG | - | chr5_1:48002234-48002253 | None:intergenic | 25.0% |
| ! | TCATTAATCAAACACAACAA+TGG | + | chr5_1:48002295-48002314 | Msa0734260:intron | 25.0% |
| ! | TATTGAAACAAAAACAGACT+TGG | - | chr5_1:48002376-48002395 | None:intergenic | 25.0% |
| !!! | TATTGAGATGTTTTAAACTG+TGG | - | chr5_1:48002565-48002584 | None:intergenic | 25.0% |
| ! | CTCAATATATTTCAAAGAAG+AGG | + | chr5_1:48002578-48002597 | Msa0734260:CDS | 25.0% |
| ! | CATAGATAATAAGGATAAAC+TGG | - | chr5_1:48002680-48002699 | None:intergenic | 25.0% |
| ! | TGATAATAAGTTATGAAGCA+CGG | - | chr5_1:48002870-48002889 | None:intergenic | 25.0% |
| !! | CCTAACTTTTGCTTATAAAT+AGG | - | chr5_1:48003047-48003066 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGCAAAAGTT+AGG | + | chr5_1:48003044-48003063 | Msa0734260:intron | 25.0% |
| ! | TCAACAAAAATTGATGTATC+TGG | - | chr5_1:48003106-48003125 | None:intergenic | 25.0% |
| ! | CTCAAGTTTCTCTTATAAAT+AGG | + | chr5_1:48003126-48003145 | Msa0734260:intron | 25.0% |
| ! | TGTAATTGTTAAGGATTTAG+TGG | - | chr5_1:48003214-48003233 | None:intergenic | 25.0% |
| ! | TACAAAAAATAATGAGCCAA+TGG | - | chr5_1:48003285-48003304 | None:intergenic | 25.0% |
| !!! | CTCATTATTTTTTGTACACA+GGG | + | chr5_1:48003289-48003308 | Msa0734260:CDS | 25.0% |
| !! | TTTGGTGTAATTATATGTGT+TGG | - | chr5_1:48003559-48003578 | None:intergenic | 25.0% |
| ! | TATTATAACAGGATACTTTG+AGG | - | chr5_1:48003840-48003859 | None:intergenic | 25.0% |
| ! | TGCAAAAACTTTACAAACTT+TGG | - | chr5_1:48003906-48003925 | None:intergenic | 25.0% |
| ! | AATATTTATAATGCAGATGG+TGG | + | chr5_1:48003973-48003992 | Msa0734260:intron | 25.0% |
| ! | TGCAATTAATTAGGATGAAT+TGG | + | chr5_1:48004462-48004481 | Msa0734260:intron | 25.0% |
| ! | GCAATTAATTAGGATGAATT+GGG | + | chr5_1:48004463-48004482 | Msa0734260:intron | 25.0% |
| !! | AATTTGATTTCTATACATGC+TGG | + | chr5_1:48004526-48004545 | Msa0734260:CDS | 25.0% |
| !! | ATTTGATTTCTATACATGCT+GGG | + | chr5_1:48004527-48004546 | Msa0734260:CDS | 25.0% |
| !! | CAAAATTTGCTTACCATATT+TGG | + | chr5_1:48004875-48004894 | Msa0734260:intron | 25.0% |
| ! | ATAGTAAAAGTAGCCAAATA+TGG | - | chr5_1:48004891-48004910 | None:intergenic | 25.0% |
| ! | TATTCTAAGCAAATTCCTTT+GGG | - | chr5_1:48005001-48005020 | None:intergenic | 25.0% |
| ! | ATATTCTAAGCAAATTCCTT+TGG | - | chr5_1:48005002-48005021 | None:intergenic | 25.0% |
| ! | TTTGCTTAGAATATATCCAA+AGG | + | chr5_1:48005008-48005027 | Msa0734260:CDS | 25.0% |
| ! | TTGCTTAGAATATATCCAAA+GGG | + | chr5_1:48005009-48005028 | Msa0734260:CDS | 25.0% |
| ! | TCTCTCAATTGTCAAATAAA+TGG | - | chr5_1:48005129-48005148 | None:intergenic | 25.0% |
| !! | ATTTTCATAATCACATATGG+CGG | + | chr5_1:48005395-48005414 | Msa0734260:intron | 25.0% |
| ! | CATTATCTTCAATTTATGGA+AGG | + | chr5_1:48005658-48005677 | Msa0734260:CDS | 25.0% |
| ! | TTATTGTTCAATAAGATGTC+AGG | - | chr5_1:48005724-48005743 | None:intergenic | 25.0% |
| ! | CTTCAGTATATAAAGTAAGA+TGG | - | chr5_1:48005853-48005872 | None:intergenic | 25.0% |
| ! | TGATTGGAATGAATGATTTA+AGG | + | chr5_1:48006020-48006039 | Msa0734260:intron | 25.0% |
| !!! | AAGCTCTAAGATATTTTCAT+AGG | - | chr5_1:48006182-48006201 | None:intergenic | 25.0% |
| !! | TTGAAATAATTTGTGGTGTT+TGG | - | chr5_1:48006295-48006314 | None:intergenic | 25.0% |
| ! | ACATTGATATAATTAGGGTT+GGG | + | chr5_1:48006410-48006429 | Msa0734260:intron | 25.0% |
| !!! | ACTGTGAAAATTTTGAAAAC+TGG | - | chr5_1:48006734-48006753 | None:intergenic | 25.0% |
| !! | TCAAAATTTTCACAGTAGAA+TGG | + | chr5_1:48006738-48006757 | Msa0734260:intron | 25.0% |
| ! | ATGTTAAAATACTAAGCTTG+AGG | + | chr5_1:48007018-48007037 | Msa0734260:intron | 25.0% |
| !!! | TACTAGTTTACTTGCTTTTA+AGG | - | chr5_1:48007104-48007123 | None:intergenic | 25.0% |
| !!! | CTATTGACTTTTTCAATTCA+AGG | - | chr5_1:48007168-48007187 | None:intergenic | 25.0% |
| ! | GAATTGAAAAAGTCAATAGT+AGG | + | chr5_1:48007169-48007188 | Msa0734260:intron | 25.0% |
| !! | GAAAGTATGTTTAGTTAACT+AGG | + | chr5_1:48007445-48007464 | Msa0734260:intron | 25.0% |
| ! | ATAAATAGGTATTAATAGGC+TGG | - | chr5_1:48007512-48007531 | None:intergenic | 25.0% |
| ! | ACCTTAATATAAAATATGCC+TGG | + | chr5_1:48007740-48007759 | Msa0734260:intron | 25.0% |
| !! | TCCAGGCATATTTTATATTA+AGG | - | chr5_1:48007744-48007763 | None:intergenic | 25.0% |
| ! | ATGACTTCACAATTATATAG+GGG | - | chr5_1:48007921-48007940 | None:intergenic | 25.0% |
| ! | ACTTAAAAGAAACAAGTGTA+GGG | - | chr5_1:48007956-48007975 | None:intergenic | 25.0% |
| ! | TACTTAAAAGAAACAAGTGT+AGG | - | chr5_1:48007957-48007976 | None:intergenic | 25.0% |
| !! | TCTAAAACCGTATTTACTTA+TGG | + | chr5_1:48008080-48008099 | Msa0734260:intron | 25.0% |
| ! | ATATCTGCCATAAGTAAATA+CGG | - | chr5_1:48008090-48008109 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTCCACAATTCA+TGG | - | chr5_1:48008227-48008246 | None:intergenic | 25.0% |
| !! | GGAAAAATCAAAGTTTTCAT+TGG | + | chr5_1:48008235-48008254 | Msa0734260:intron | 25.0% |
| ! | ATATTGACACGTTATAATTG+AGG | - | chr5_1:48008434-48008453 | None:intergenic | 25.0% |
| ! | CAATAACTTTAATGTGTAAG+AGG | - | chr5_1:48008583-48008602 | None:intergenic | 25.0% |
| ! | AGTGATTAGAAAATCGAAAT+TGG | - | chr5_1:48008739-48008758 | None:intergenic | 25.0% |
| !!! | TGTTTTTAGAGTTACGTTCA+AGG | + | chr5_1:48001030-48001049 | Msa0734260:CDS | 30.0% |
| !! | ATATTGATAACGGATGAAGA+CGG | + | chr5_1:48001065-48001084 | Msa0734260:CDS | 30.0% |
| TAAACTACTCTCTAAACACT+TGG | + | chr5_1:48001173-48001192 | Msa0734260:intron | 30.0% | |
| TACTCATTATCATTGCAAGA+TGG | - | chr5_1:48001482-48001501 | None:intergenic | 30.0% | |
| TGAAATATAAGGTTGCAGAT+TGG | - | chr5_1:48001626-48001645 | None:intergenic | 30.0% | |
| !! | AAAGAAGCATTCATGTTTAG+TGG | - | chr5_1:48001667-48001686 | None:intergenic | 30.0% |
| TTTGATGTTACAGTTCAATG+AGG | - | chr5_1:48001831-48001850 | None:intergenic | 30.0% | |
| !! | GCTTTTTATTTACCTTCCTT+AGG | + | chr5_1:48001931-48001950 | Msa0734260:intron | 30.0% |
| ATACTATAACCATGTTCCTA+AGG | - | chr5_1:48001950-48001969 | None:intergenic | 30.0% | |
| ! | GACATTATCTCTTTTCAATG+TGG | - | chr5_1:48002016-48002035 | None:intergenic | 30.0% |
| GTCACAAAACAAACACTATT+GGG | - | chr5_1:48002172-48002191 | None:intergenic | 30.0% | |
| TGTCACAAAACAAACACTAT+TGG | - | chr5_1:48002173-48002192 | None:intergenic | 30.0% | |
| !!! | TGTTTTAAGATTATCAGGAG+TGG | - | chr5_1:48002229-48002248 | None:intergenic | 30.0% |
| TGATTAATGATGTCTCTTGA+GGG | - | chr5_1:48002285-48002304 | None:intergenic | 30.0% | |
| TTGATTAATGATGTCTCTTG+AGG | - | chr5_1:48002286-48002305 | None:intergenic | 30.0% | |
| ACAACAATGGCAACAAAATT+TGG | + | chr5_1:48002308-48002327 | Msa0734260:intron | 30.0% | |
| !!! | TTGGTTTTAGTAAAACCTCT+AGG | + | chr5_1:48002327-48002346 | Msa0734260:intron | 30.0% |
| !! | TTTAATCGATTTGTTCCTAG+AGG | - | chr5_1:48002345-48002364 | None:intergenic | 30.0% |
| CAATAGAATGTTTAAGCTCA+AGG | + | chr5_1:48002391-48002410 | Msa0734260:intron | 30.0% | |
| !! | ATATTGTTGATTTCTTCTGG+TGG | - | chr5_1:48002425-48002444 | None:intergenic | 30.0% |
| AAAGTAGTACAATTCATCCA+TGG | - | chr5_1:48002480-48002499 | None:intergenic | 30.0% | |
| !! | AGTTGATTTTCAAGGAGAAA+AGG | + | chr5_1:48002502-48002521 | Msa0734260:CDS | 30.0% |
| !! | GTTGATTTTCAAGGAGAAAA+GGG | + | chr5_1:48002503-48002522 | Msa0734260:CDS | 30.0% |
| ! | AACATCTTGAGCATGTTTTT+GGG | - | chr5_1:48002540-48002559 | None:intergenic | 30.0% |
| ! | AAACATCTTGAGCATGTTTT+TGG | - | chr5_1:48002541-48002560 | None:intergenic | 30.0% |
| AAATTTACCTGATCACCTAT+GGG | - | chr5_1:48002653-48002672 | None:intergenic | 30.0% | |
| AAAATTTACCTGATCACCTA+TGG | - | chr5_1:48002654-48002673 | None:intergenic | 30.0% | |
| TCCTTATTATCTATGAAGCA+CGG | + | chr5_1:48002685-48002704 | Msa0734260:intron | 30.0% | |
| TTCAGTGTAATTATAGGTGA+CGG | + | chr5_1:48002776-48002795 | Msa0734260:intron | 30.0% | |
| TATCAAAAATATACTCCCTC+CGG | + | chr5_1:48003020-48003039 | Msa0734260:intron | 30.0% | |
| ! | CTTTTGCTTATAAATAGGAC+CGG | - | chr5_1:48003042-48003061 | None:intergenic | 30.0% |
| GTTTCTCTTATAAATAGGAC+CGG | + | chr5_1:48003131-48003150 | Msa0734260:intron | 30.0% | |
| !!! | TGTATGTTTTTGGCTCTATT+TGG | - | chr5_1:48003177-48003196 | None:intergenic | 30.0% |
| !!! | GCTCATTATTTTTTGTACAC+AGG | + | chr5_1:48003288-48003307 | Msa0734260:CDS | 30.0% |
| ! | CAATTGATTTCCAGTTAAGT+AGG | - | chr5_1:48003322-48003341 | None:intergenic | 30.0% |
| !! | ACATCATCTTCTCTAGAATT+TGG | - | chr5_1:48003420-48003439 | None:intergenic | 30.0% |
| ! | AAATTCTAGAGAAGATGATG+TGG | + | chr5_1:48003419-48003438 | Msa0734260:CDS | 30.0% |
| ! | TATGAAGCACGAATACTTTT+CGG | + | chr5_1:48003478-48003497 | Msa0734260:intron | 30.0% |
| TATTGAAAACCTATGAAGCA+CGG | - | chr5_1:48003645-48003664 | None:intergenic | 30.0% | |
| TCAACAATGTGCTACAATAT+TGG | - | chr5_1:48003684-48003703 | None:intergenic | 30.0% | |
| !!! | TTGACTTATTTTTGAGCTGT+AGG | + | chr5_1:48003750-48003769 | Msa0734260:intron | 30.0% |
| AGATTGTTTGAATGCCATTA+GGG | + | chr5_1:48003799-48003818 | Msa0734260:CDS | 30.0% | |
| !! | ATGGTGGATGATATATTTAG+AGG | + | chr5_1:48003989-48004008 | Msa0734260:CDS | 30.0% |
| ! | TTTGATTTCAACAAAACCAC+CGG | + | chr5_1:48004084-48004103 | Msa0734260:CDS | 30.0% |
| ! | AGCTGATTCAAGACATATAT+AGG | - | chr5_1:48004411-48004430 | None:intergenic | 30.0% |
| TATATATGTCTTGAATCAGC+TGG | + | chr5_1:48004410-48004429 | Msa0734260:intron | 30.0% | |
| ATATATGTCTTGAATCAGCT+GGG | + | chr5_1:48004411-48004430 | Msa0734260:intron | 30.0% | |
| ! | AATATCATTCCCATGAGTTT+TGG | - | chr5_1:48004641-48004660 | None:intergenic | 30.0% |
| TGATGTAGTGTACTTATACA+AGG | - | chr5_1:48004857-48004876 | None:intergenic | 30.0% | |
| ATTCATAGGATCATAATTGG+AGG | - | chr5_1:48005049-48005068 | None:intergenic | 30.0% | |
| TCCAATTATGATCCTATGAA+TGG | + | chr5_1:48005048-48005067 | Msa0734260:CDS | 30.0% | |
| TCCATTCATAGGATCATAAT+TGG | - | chr5_1:48005052-48005071 | None:intergenic | 30.0% | |
| ATTATGATCCTATGAATGGA+TGG | + | chr5_1:48005052-48005071 | Msa0734260:CDS | 30.0% | |
| AATGGTAGCATTTAATATGC+AGG | + | chr5_1:48005089-48005108 | Msa0734260:CDS | 30.0% | |
| AGGATGCAAGTTGTTATAAT+AGG | - | chr5_1:48005366-48005385 | None:intergenic | 30.0% | |
| !!! | AAAGTTTGAGGATTTTTTGC+AGG | + | chr5_1:48005531-48005550 | Msa0734260:intron | 30.0% |
| !! | TTGTTTTACTTAAAGGGACA+TGG | + | chr5_1:48005634-48005653 | Msa0734260:intron | 30.0% |
| ! | TGTTTTACTTAAAGGGACAT+GGG | + | chr5_1:48005635-48005654 | Msa0734260:intron | 30.0% |
| TGGGCATTATCTTCAATTTA+TGG | + | chr5_1:48005654-48005673 | Msa0734260:CDS | 30.0% | |
| ! | TTTACCTGAAGAGTTTTCTT+TGG | - | chr5_1:48005775-48005794 | None:intergenic | 30.0% |
| AAAGAAAACTCTTCAGGTAA+AGG | + | chr5_1:48005774-48005793 | Msa0734260:intron | 30.0% | |
| AAGAAAACTCTTCAGGTAAA+GGG | + | chr5_1:48005775-48005794 | Msa0734260:intron | 30.0% | |
| ! | TATTTTCATAGGCAATCTTG+AGG | - | chr5_1:48006171-48006190 | None:intergenic | 30.0% |
| CACATTGATATAATTAGGGT+TGG | + | chr5_1:48006409-48006428 | Msa0734260:intron | 30.0% | |
| ATATAATTAGGGTTGGGAAT+AGG | + | chr5_1:48006416-48006435 | Msa0734260:intron | 30.0% | |
| GTAGGTGTACGATATATTAT+TGG | + | chr5_1:48007187-48007206 | Msa0734260:intron | 30.0% | |
| GTAATAATTTAAAGGGGTGA+GGG | + | chr5_1:48007312-48007331 | Msa0734260:intron | 30.0% | |
| TAATAATTTAAAGGGGTGAG+GGG | + | chr5_1:48007313-48007332 | Msa0734260:intron | 30.0% | |
| TATGTTTAGTTAACTAGGTC+AGG | + | chr5_1:48007450-48007469 | Msa0734260:intron | 30.0% | |
| AAAAGTCTGTTAAGCCTAAT+AGG | + | chr5_1:48007486-48007505 | Msa0734260:intron | 30.0% | |
| !! | GTTGATATAGGCTTTTAAGT+AGG | + | chr5_1:48007619-48007638 | Msa0734260:intron | 30.0% |
| !! | AGTGAAATAGGCTTTTAAGT+AGG | + | chr5_1:48007668-48007687 | Msa0734260:intron | 30.0% |
| GTTCATTTGACCTACTAAAT+AGG | - | chr5_1:48007711-48007730 | None:intergenic | 30.0% | |
| TATAAAATATGCCTGGAAGT+AGG | + | chr5_1:48007747-48007766 | Msa0734260:intron | 30.0% | |
| AGGCTTGTAAAAAAATTCGT+AGG | + | chr5_1:48007849-48007868 | Msa0734260:intron | 30.0% | |
| ! | CTTCAATTTTCATGTTTGTG+GGG | - | chr5_1:48008035-48008054 | None:intergenic | 30.0% |
| ! | CCTTCAATTTTCATGTTTGT+GGG | - | chr5_1:48008036-48008055 | None:intergenic | 30.0% |
| CCACAAACATGAAAATTGAA+GGG | + | chr5_1:48008034-48008053 | Msa0734260:intron | 30.0% | |
| AAAAGGAGGAAGTCAAAAAA+GGG | - | chr5_1:48008191-48008210 | None:intergenic | 30.0% | |
| AAAAAGGAGGAAGTCAAAAA+AGG | - | chr5_1:48008192-48008211 | None:intergenic | 30.0% | |
| ! | ATTTTTCCACAATTCATGGT+AGG | - | chr5_1:48008223-48008242 | None:intergenic | 30.0% |
| !! | TTTTTAATTCGTGATGCACT+CGG | + | chr5_1:48008261-48008280 | Msa0734260:intron | 30.0% |
| ATAACGTGTCAATATTATGC+AGG | + | chr5_1:48008439-48008458 | Msa0734260:intron | 30.0% | |
| TCCATTAACTTATCCAGAAT+TGG | + | chr5_1:48008556-48008575 | Msa0734260:CDS | 30.0% | |
| GTGAACTTTATAAGCATGTT+AGG | + | chr5_1:48008705-48008724 | Msa0734260:CDS | 30.0% | |
| TGAACTATCTTTAATGACTG+AGG | + | chr5_1:48008875-48008894 | Msa0734260:three_prime_UTR | 30.0% | |
| TTAGAGTTACGTTCAAGGAA+AGG | + | chr5_1:48001035-48001054 | Msa0734260:CDS | 35.0% | |
| TAGAGTTACGTTCAAGGAAA+GGG | + | chr5_1:48001036-48001055 | Msa0734260:CDS | 35.0% | |
| AGGGCTGAAGATATTGATAA+CGG | + | chr5_1:48001055-48001074 | Msa0734260:CDS | 35.0% | |
| TAAACACTTGGTTGTGTAAG+AGG | + | chr5_1:48001185-48001204 | Msa0734260:intron | 35.0% | |
| ! | GATCCTTTTACTTATGTGTG+TGG | + | chr5_1:48001402-48001421 | Msa0734260:intron | 35.0% |
| GATCCACACACATAAGTAAA+AGG | - | chr5_1:48001408-48001427 | None:intergenic | 35.0% | |
| CTTATGTGTGTGGATCAATT+TGG | + | chr5_1:48001412-48001431 | Msa0734260:intron | 35.0% | |
| AGCATTCATGTTTAGTGGAA+AGG | - | chr5_1:48001662-48001681 | None:intergenic | 35.0% | |
| GAATATTCAATGTGATGTGC+TGG | - | chr5_1:48001704-48001723 | None:intergenic | 35.0% | |
| AGTTCAATGAGGAATAACTC+TGG | - | chr5_1:48001820-48001839 | None:intergenic | 35.0% | |
| ATTTACCTTCCTTAGGAACA+TGG | + | chr5_1:48001938-48001957 | Msa0734260:intron | 35.0% | |
| TATAACCATGTTCCTAAGGA+AGG | - | chr5_1:48001946-48001965 | None:intergenic | 35.0% | |
| ! | TTGTGTTTTTCCCAATAGCT+TGG | - | chr5_1:48001990-48002009 | None:intergenic | 35.0% |
| GATATCAGAGTCTATCCATT+CGG | + | chr5_1:48002118-48002137 | Msa0734260:intron | 35.0% | |
| !! | TTAGTGCGTTGATATTTTGG+TGG | - | chr5_1:48002149-48002168 | None:intergenic | 35.0% |
| ATTAATGATGTCTCTTGAGG+GGG | - | chr5_1:48002283-48002302 | None:intergenic | 35.0% | |
| GATTAATGATGTCTCTTGAG+GGG | - | chr5_1:48002284-48002303 | None:intergenic | 35.0% | |
| TAGAATGTTTAAGCTCAAGG+TGG | + | chr5_1:48002394-48002413 | Msa0734260:intron | 35.0% | |
| AAAAAATGGTACCATGACCA+TGG | + | chr5_1:48002460-48002479 | Msa0734260:CDS | 35.0% | |
| ACCAAAGAGATAACGAAAGA+AGG | - | chr5_1:48002618-48002637 | None:intergenic | 35.0% | |
| ! | TATCTCTTTGGTGACCTAAA+TGG | + | chr5_1:48002626-48002645 | Msa0734260:CDS | 35.0% |
| AATTTACCTGATCACCTATG+GGG | - | chr5_1:48002652-48002671 | None:intergenic | 35.0% | |
| TCCGTGCTTCATAGATAATA+AGG | - | chr5_1:48002689-48002708 | None:intergenic | 35.0% | |
| AAAAAGTCATATACTCCCTC+CGG | - | chr5_1:48003153-48003172 | None:intergenic | 35.0% | |
| TCAAGATATGAATGCTCCAT+TGG | + | chr5_1:48003266-48003285 | Msa0734260:CDS | 35.0% | |
| AGGAGTTAGAGTAATTGAGT+TGG | + | chr5_1:48003386-48003405 | Msa0734260:CDS | 35.0% | |
| !! | GAGTAATTGAGTTGGATTTG+TGG | + | chr5_1:48003394-48003413 | Msa0734260:CDS | 35.0% |
| GAGATTGTTTGAATGCCATT+AGG | + | chr5_1:48003798-48003817 | Msa0734260:CDS | 35.0% | |
| ATCAAATGCATTGTCCCTAA+TGG | - | chr5_1:48003816-48003835 | None:intergenic | 35.0% | |
| !!! | ATCTTTTGGCTTTGACTTTC+AGG | - | chr5_1:48004115-48004134 | None:intergenic | 35.0% |
| TCAAAGCCAAAAGATACAAG+AGG | + | chr5_1:48004120-48004139 | Msa0734260:CDS | 35.0% | |
| ! | CTTCTTCCTCTTGTATCTTT+TGG | - | chr5_1:48004129-48004148 | None:intergenic | 35.0% |
| ! | GCTTATGGGATTGTTTGTTA+AGG | + | chr5_1:48004220-48004239 | Msa0734260:intron | 35.0% |
| TATATGTCTTGAATCAGCTG+GGG | + | chr5_1:48004412-48004431 | Msa0734260:intron | 35.0% | |
| ! | CAATGTTCTACACTACCTTT+TGG | - | chr5_1:48004556-48004575 | None:intergenic | 35.0% |
| CAAAAGGTAGTGTAGAACAT+TGG | + | chr5_1:48004554-48004573 | Msa0734260:CDS | 35.0% | |
| ! | TAGTGTAGAACATTGGTTGA+TGG | + | chr5_1:48004561-48004580 | Msa0734260:CDS | 35.0% |
| TGATGGAACATGATCAAGTT+AGG | + | chr5_1:48004578-48004597 | Msa0734260:CDS | 35.0% | |
| AAGAAATCGCCAAAACTCAT+GGG | + | chr5_1:48004629-48004648 | Msa0734260:CDS | 35.0% | |
| GTAGTGTACTTATACAAGGA+TGG | - | chr5_1:48004853-48004872 | None:intergenic | 35.0% | |
| TTGACAATTGAGAGAAGAGA+AGG | + | chr5_1:48005134-48005153 | Msa0734260:intron | 35.0% | |
| TGACAATTGAGAGAAGAGAA+GGG | + | chr5_1:48005135-48005154 | Msa0734260:intron | 35.0% | |
| GAACAATTGCATGGATGAAA+AGG | - | chr5_1:48005446-48005465 | None:intergenic | 35.0% | |
| GTAACATACGAACAATTGCA+TGG | - | chr5_1:48005455-48005474 | None:intergenic | 35.0% | |
| AAAACAGGTTCACGTATACA+TGG | + | chr5_1:48005907-48005926 | Msa0734260:intron | 35.0% | |
| AAACAGGTTCACGTATACAT+GGG | + | chr5_1:48005908-48005927 | Msa0734260:intron | 35.0% | |
| ATTACCTGTACACGAAAATC+AGG | - | chr5_1:48005986-48006005 | None:intergenic | 35.0% | |
| GTACTTGTGAGACTATATGA+TGG | + | chr5_1:48006085-48006104 | Msa0734260:intron | 35.0% | |
| CTTGAGGAGTTTACGAAAAT+AGG | - | chr5_1:48006155-48006174 | None:intergenic | 35.0% | |
| AATAACATGAAACTGCGTAG+AGG | - | chr5_1:48006606-48006625 | None:intergenic | 35.0% | |
| ! | ATTTTCACAGTAGAATGGTG+TGG | + | chr5_1:48006743-48006762 | Msa0734260:intron | 35.0% |
| AAATACTAAGCTTGAGGTTG+AGG | + | chr5_1:48007024-48007043 | Msa0734260:intron | 35.0% | |
| !!! | TGGTGCAAACCTTATTTTCT+AGG | + | chr5_1:48007258-48007277 | Msa0734260:intron | 35.0% |
| !!! | TGCAAACCTTATTTTCTAGG+AGG | + | chr5_1:48007261-48007280 | Msa0734260:intron | 35.0% |
| CATGAACCTCCTAGAAAATA+AGG | - | chr5_1:48007270-48007289 | None:intergenic | 35.0% | |
| GGTAATAATTTAAAGGGGTG+AGG | + | chr5_1:48007311-48007330 | Msa0734260:intron | 35.0% | |
| AATAATTTAAAGGGGTGAGG+GGG | + | chr5_1:48007314-48007333 | Msa0734260:intron | 35.0% | |
| ! | ACCTAACATGTTTAGTGGAT+AGG | + | chr5_1:48007403-48007422 | Msa0734260:intron | 35.0% |
| !! | TTTCTAAAATGCCTAAGCCT+AGG | - | chr5_1:48007429-48007448 | None:intergenic | 35.0% |
| !! | TATTAATAGGCTGGCCTATT+AGG | - | chr5_1:48007503-48007522 | None:intergenic | 35.0% |
| !! | AGGCTTTTAAGTAGGCTTTA+AGG | + | chr5_1:48007627-48007646 | Msa0734260:intron | 35.0% |
| ACCTACTAAATAGGCTAAAG+AGG | - | chr5_1:48007702-48007721 | None:intergenic | 35.0% | |
| ACCTATTTAAAAGTCTGGAC+TGG | - | chr5_1:48007781-48007800 | None:intergenic | 35.0% | |
| ! | TCCAGACTTTTAAATAGGTC+AGG | + | chr5_1:48007782-48007801 | Msa0734260:intron | 35.0% |
| ACCTGACCTATTTAAAAGTC+TGG | - | chr5_1:48007786-48007805 | None:intergenic | 35.0% | |
| !!! | TTTTTTTACAAGCCTGAGTC+TGG | - | chr5_1:48007844-48007863 | None:intergenic | 35.0% |
| AATTATATAGGGGTGGGAAT+AGG | - | chr5_1:48007911-48007930 | None:intergenic | 35.0% | |
| CTTCACAATTATATAGGGGT+GGG | - | chr5_1:48007917-48007936 | None:intergenic | 35.0% | |
| ACTTCACAATTATATAGGGG+TGG | - | chr5_1:48007918-48007937 | None:intergenic | 35.0% | |
| CCCACAAACATGAAAATTGA+AGG | + | chr5_1:48008033-48008052 | Msa0734260:intron | 35.0% | |
| ! | CCCTTCAATTTTCATGTTTG+TGG | - | chr5_1:48008037-48008056 | None:intergenic | 35.0% |
| AAAGGAGGAAGTCAAAAAAG+GGG | - | chr5_1:48008190-48008209 | None:intergenic | 35.0% | |
| ATGGTAGGTCAAATGGAAAA+AGG | - | chr5_1:48008208-48008227 | None:intergenic | 35.0% | |
| ACAATTCATGGTAGGTCAAA+TGG | - | chr5_1:48008215-48008234 | None:intergenic | 35.0% | |
| ATTTGACCTACCATGAATTG+TGG | + | chr5_1:48008214-48008233 | Msa0734260:intron | 35.0% | |
| !! | TTTTAATTCGTGATGCACTC+GGG | + | chr5_1:48008262-48008281 | Msa0734260:intron | 35.0% |
| ATACAGTCACCAAAGTAACT+AGG | + | chr5_1:48008486-48008505 | Msa0734260:CDS | 35.0% | |
| TTAACTCCTCATTCCAAACT+GGG | - | chr5_1:48008532-48008551 | None:intergenic | 35.0% | |
| TTTAACTCCTCATTCCAAAC+TGG | - | chr5_1:48008533-48008552 | None:intergenic | 35.0% | |
| GCCAATTCTGGATAAGTTAA+TGG | - | chr5_1:48008560-48008579 | None:intergenic | 35.0% | |
| ! | GTTATTGAACGTGACTTTTC+TGG | + | chr5_1:48008596-48008615 | Msa0734260:CDS | 35.0% |
| GCTTATAAAGTTCACCTTTG+CGG | - | chr5_1:48008700-48008719 | None:intergenic | 35.0% | |
| ! | GATGTGCTGGTAAAGTTAAG+TGG | - | chr5_1:48001691-48001710 | None:intergenic | 40.0% |
| GATTGCTTGAGTTTGTGTGT+TGG | - | chr5_1:48001861-48001880 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr5_1:48002073-48002092 | Msa0734260:intron | 40.0% |
| !! | ATTTTGGTGGATGAACCGAA+TGG | - | chr5_1:48002136-48002155 | None:intergenic | 40.0% |
| !! | GGGTTAGTGCGTTGATATTT+TGG | - | chr5_1:48002152-48002171 | None:intergenic | 40.0% |
| GTACAATTCATCCATGGTCA+TGG | - | chr5_1:48002474-48002493 | None:intergenic | 40.0% | |
| !! | GATTTTCAAGGAGAAAAGGG+TGG | + | chr5_1:48002506-48002525 | Msa0734260:CDS | 40.0% |
| GCCTTCTTTCGTTATCTCTT+TGG | + | chr5_1:48002614-48002633 | Msa0734260:CDS | 40.0% | |
| TGCTTATAAATAGGACCGGA+GGG | - | chr5_1:48003038-48003057 | None:intergenic | 40.0% | |
| TTGCTTATAAATAGGACCGG+AGG | - | chr5_1:48003039-48003058 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_1:48003134-48003153 | Msa0734260:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_1:48003135-48003154 | Msa0734260:intron | 40.0% | |
| ! | GCACGAATACTTTTCGGATA+AGG | + | chr5_1:48003484-48003503 | Msa0734260:intron | 40.0% |
| !! | TATATGTGTTGGTGTCGTGT+CGG | - | chr5_1:48003548-48003567 | None:intergenic | 40.0% |
| GTTGAAGAGGTGGAGTTATA+TGG | - | chr5_1:48003874-48003893 | None:intergenic | 40.0% | |
| ! | ATTTTCCCCTTCAACGATTC+TGG | - | chr5_1:48004064-48004083 | None:intergenic | 40.0% |
| TTGCTTGAGGACAAAGATGA+TGG | + | chr5_1:48004154-48004173 | Msa0734260:CDS | 40.0% | |
| ! | TGGATCTAGAGTCAATGATG+AGG | + | chr5_1:48004174-48004193 | Msa0734260:CDS | 40.0% |
| TGAATTGGGTGATGAAAGTG+AGG | + | chr5_1:48004477-48004496 | Msa0734260:CDS | 40.0% | |
| GAAGAAATCGCCAAAACTCA+TGG | + | chr5_1:48004628-48004647 | Msa0734260:CDS | 40.0% | |
| CTCATGGGAATGATATTGTC+AGG | + | chr5_1:48004644-48004663 | Msa0734260:CDS | 40.0% | |
| ! | GGTGAATCTAAAGCATGGAA+TGG | - | chr5_1:48004980-48004999 | None:intergenic | 40.0% |
| ! | CTTTGGGTGAATCTAAAGCA+TGG | - | chr5_1:48004985-48005004 | None:intergenic | 40.0% |
| ! | CATGCTTTAGATTCACCCAA+AGG | + | chr5_1:48004983-48005002 | Msa0734260:intron | 40.0% |
| TGCATGGATGAAAAGGTCTT+AGG | - | chr5_1:48005439-48005458 | None:intergenic | 40.0% | |
| TGTTCGTATGTTACGCACTT+TGG | + | chr5_1:48005461-48005480 | Msa0734260:intron | 40.0% | |
| ! | TCACGTTAACTAGTGTCACT+AGG | + | chr5_1:48005554-48005573 | Msa0734260:intron | 40.0% |
| GAAGGAATGTTCAAAGCCAA+TGG | + | chr5_1:48005676-48005695 | Msa0734260:CDS | 40.0% | |
| TTCTTTGGTCGGTATACTCT+AGG | - | chr5_1:48005760-48005779 | None:intergenic | 40.0% | |
| ! | CCTGAAGAGTTTTCTTTGGT+CGG | - | chr5_1:48005771-48005790 | None:intergenic | 40.0% |
| TTCACGTATACATGGGTGAA+GGG | + | chr5_1:48005915-48005934 | Msa0734260:CDS | 40.0% | |
| ! | ATTTTGAACCCTCTAACCCA+GGG | - | chr5_1:48006486-48006505 | None:intergenic | 40.0% |
| ! | AATTTTGAACCCTCTAACCC+AGG | - | chr5_1:48006487-48006506 | None:intergenic | 40.0% |
| TTACAGTCACAAGAGAGAGA+TGG | + | chr5_1:48007238-48007257 | Msa0734260:intron | 40.0% | |
| TCCACTAAACATGTTAGGTC+AGG | - | chr5_1:48007402-48007421 | None:intergenic | 40.0% | |
| GCCTATCCACTAAACATGTT+AGG | - | chr5_1:48007407-48007426 | None:intergenic | 40.0% | |
| TAGTTAACTAGGTCAGGCTT+AGG | + | chr5_1:48007456-48007475 | Msa0734260:intron | 40.0% | |
| GCCTCTTTAGCCTATTTAGT+AGG | + | chr5_1:48007698-48007717 | Msa0734260:intron | 40.0% | |
| ! | GCCAGTCCAGACTTTTAAAT+AGG | + | chr5_1:48007777-48007796 | Msa0734260:intron | 40.0% |
| TCAGGTCAGACCAAGAAAAA+CGG | + | chr5_1:48007800-48007819 | Msa0734260:intron | 40.0% | |
| !!! | CTATCATAGGCCGTTTTTCT+TGG | - | chr5_1:48007813-48007832 | None:intergenic | 40.0% |
| CAAGAAAAACGGCCTATGAT+AGG | + | chr5_1:48007811-48007830 | Msa0734260:intron | 40.0% | |
| AAAATTCGTAGGTCAGACTC+AGG | + | chr5_1:48007860-48007879 | Msa0734260:intron | 40.0% | |
| GACTCAGGTTTATCAAAGTC+TGG | + | chr5_1:48007875-48007894 | Msa0734260:intron | 40.0% | |
| AAAATGCTAAAGTTCCCGAC+AGG | + | chr5_1:48008125-48008144 | Msa0734260:intron | 40.0% | |
| TCTTTCGGGATAAAACCTGT+CGG | - | chr5_1:48008143-48008162 | None:intergenic | 40.0% | |
| AATACACGCTCGTGATCTTT+CGG | - | chr5_1:48008158-48008177 | None:intergenic | 40.0% | |
| AAGGAGGAAGTCAAAAAAGG+GGG | - | chr5_1:48008189-48008208 | None:intergenic | 40.0% | |
| GTAGGTCAAATGGAAAAAGG+AGG | - | chr5_1:48008205-48008224 | None:intergenic | 40.0% | |
| CGTGTCAATATTATGCAGGT+TGG | + | chr5_1:48008443-48008462 | Msa0734260:intron | 40.0% | |
| !! | ATTATGCAGGTTGGTATCCA+TGG | + | chr5_1:48008452-48008471 | Msa0734260:intron | 40.0% |
| ! | ACTTTGGTGACTGTATCAAC+TGG | - | chr5_1:48008482-48008501 | None:intergenic | 40.0% |
| TTCCTTGGTCCTAGTTACTT+TGG | - | chr5_1:48008498-48008517 | None:intergenic | 40.0% | |
| ! | TCTGGACAACATGATTTTGC+TGG | + | chr5_1:48008614-48008633 | Msa0734260:CDS | 40.0% |
| TGACTGAGGTACATAGAAAG+AGG | + | chr5_1:48008889-48008908 | Msa0734260:three_prime_UTR | 40.0% | |
| GACAACTAACGTCGTATACG+AGG | + | chr5_1:48001103-48001122 | Msa0734260:CDS | 45.0% | |
| TAAATCCTATCAGACCCGTG+CGG | + | chr5_1:48001291-48001310 | Msa0734260:intron | 45.0% | |
| TCGCTTGAGTTCCAAGCTAT+TGG | + | chr5_1:48001976-48001995 | Msa0734260:intron | 45.0% | |
| CGCTTGAGTTCCAAGCTATT+GGG | + | chr5_1:48001977-48001996 | Msa0734260:intron | 45.0% | |
| AATGACACCATCTAGCAACG+CGG | + | chr5_1:48002053-48002072 | Msa0734260:intron | 45.0% | |
| TACAAAACCGCGTTGCTAGA+TGG | - | chr5_1:48002063-48002082 | None:intergenic | 45.0% | |
| !! | TCTAGCAACGCGGTTTTGTA+AGG | + | chr5_1:48002063-48002082 | Msa0734260:intron | 45.0% |
| ATACGAACACAGACACGACA+TGG | + | chr5_1:48002708-48002727 | Msa0734260:intron | 45.0% | |
| GATGATGTGGAAGTTCGTCA+TGG | + | chr5_1:48003432-48003451 | Msa0734260:CDS | 45.0% | |
| ATGTGGAAGTTCGTCATGGA+GGG | + | chr5_1:48003436-48003455 | Msa0734260:CDS | 45.0% | |
| AACCTATGAAGCACGGATAC+CGG | - | chr5_1:48003638-48003657 | None:intergenic | 45.0% | |
| CCTTCAACGATTCTGGTGAA+GGG | - | chr5_1:48004057-48004076 | None:intergenic | 45.0% | |
| CCTTCACCAGAATCGTTGAA+GGG | + | chr5_1:48004055-48004074 | Msa0734260:CDS | 45.0% | |
| CTTCACCAGAATCGTTGAAG+GGG | + | chr5_1:48004056-48004075 | Msa0734260:CDS | 45.0% | |
| ! | CTTTGACTTTCAGGAGACTC+CGG | - | chr5_1:48004106-48004125 | None:intergenic | 45.0% |
| ! | GGAAGAAGTTGAGTTGCTTG+AGG | + | chr5_1:48004141-48004160 | Msa0734260:CDS | 45.0% |
| ATTGGGTGATGAAAGTGAGG+AGG | + | chr5_1:48004480-48004499 | Msa0734260:CDS | 45.0% | |
| ATACATGCTGGGAAGCCAAA+AGG | + | chr5_1:48004538-48004557 | Msa0734260:CDS | 45.0% | |
| ATATCCAAAGGGTTCACGTG+TGG | + | chr5_1:48005020-48005039 | Msa0734260:CDS | 45.0% | |
| CCATGCATCCATCCATTCAT+AGG | - | chr5_1:48005063-48005082 | None:intergenic | 45.0% | |
| CCTATGAATGGATGGATGCA+TGG | + | chr5_1:48005060-48005079 | Msa0734260:CDS | 45.0% | |
| ATGGATGCATGGAGCTCAAA+TGG | + | chr5_1:48005071-48005090 | Msa0734260:CDS | 45.0% | |
| GGAATGTTCAAAGCCAATGG+TGG | + | chr5_1:48005679-48005698 | Msa0734260:CDS | 45.0% | |
| !! | TTCAAAGCCAATGGTGGATG+TGG | + | chr5_1:48005685-48005704 | Msa0734260:CDS | 45.0% |
| !! | TCAAAGCCAATGGTGGATGT+GGG | + | chr5_1:48005686-48005705 | Msa0734260:CDS | 45.0% |
| AACATACCCACATCCACCAT+TGG | - | chr5_1:48005695-48005714 | None:intergenic | 45.0% | |
| CCGACCAAAGAAAACTCTTC+AGG | + | chr5_1:48005768-48005787 | Msa0734260:CDS | 45.0% | |
| CTCTTCAGGTAAAGGGAATG+TGG | + | chr5_1:48005782-48005801 | Msa0734260:intron | 45.0% | |
| GTTCACGTATACATGGGTGA+AGG | + | chr5_1:48005914-48005933 | Msa0734260:CDS | 45.0% | |
| GAAGGGTGGCAATCTGAATT+TGG | + | chr5_1:48005932-48005951 | Msa0734260:CDS | 45.0% | |
| ACCTGTACACGAAAATCAGG+CGG | - | chr5_1:48005983-48006002 | None:intergenic | 45.0% | |
| ATTAGGGTTGGGAATAGGTC+AGG | + | chr5_1:48006421-48006440 | Msa0734260:intron | 45.0% | |
| ATGTTAGGTCAGGCCAAAAC+AGG | - | chr5_1:48007392-48007411 | None:intergenic | 45.0% | |
| GCCTGACCTAACATGTTTAG+TGG | + | chr5_1:48007398-48007417 | Msa0734260:intron | 45.0% | |
| ! | CATGTTTAGTGGATAGGCCT+AGG | + | chr5_1:48007409-48007428 | Msa0734260:intron | 45.0% |
| ! | ATGCCTGGAAGTAGGTTTTC+AGG | + | chr5_1:48007755-48007774 | Msa0734260:intron | 45.0% |
| AACGGCCTATGATAGGTCAT+AGG | + | chr5_1:48007818-48007837 | Msa0734260:intron | 45.0% | |
| TCTGGCCTATGACCTATCAT+AGG | - | chr5_1:48007826-48007845 | None:intergenic | 45.0% | |
| CTTTCGGGATAAAACCTGTC+GGG | - | chr5_1:48008142-48008161 | None:intergenic | 45.0% | |
| ATACACGCTCGTGATCTTTC+GGG | - | chr5_1:48008157-48008176 | None:intergenic | 45.0% | |
| !!! | CACTCGGGATGGATTTTTTC+AGG | + | chr5_1:48008277-48008296 | Msa0734260:intron | 45.0% |
| CTGTATCAACTGGAACACCA+TGG | - | chr5_1:48008472-48008491 | None:intergenic | 45.0% | |
| CACCAAAGTAACTAGGACCA+AGG | + | chr5_1:48008493-48008512 | Msa0734260:CDS | 45.0% | |
| TAGGACCAAGGAAGATGAGT+GGG | + | chr5_1:48008505-48008524 | Msa0734260:CDS | 45.0% | |
| ATGTGTAAGAGGGCCAATTC+TGG | - | chr5_1:48008572-48008591 | None:intergenic | 45.0% | |
| !! | CCTTCTCTTAGCTCTGATAC+AGG | - | chr5_1:48008653-48008672 | None:intergenic | 45.0% |
| CCTGTATCAGAGCTAAGAGA+AGG | + | chr5_1:48008650-48008669 | Msa0734260:CDS | 45.0% | |
| GTTCGTTTGTGTAACCGCAA+AGG | + | chr5_1:48008683-48008702 | Msa0734260:CDS | 45.0% | |
| !!! | CTTTATTTATTTATAAATTT+GGG | + | chr5_1:48005495-48005514 | Msa0734260:intron | 5.0% |
| !! | AATAAATAAATAAATAAAAC+AGG | + | chr5_1:48005892-48005911 | Msa0734260:intron | 5.0% |
| !! | ATTTATTTCAAATATATTTA+CGG | - | chr5_1:48006387-48006406 | None:intergenic | 5.0% |
| !! | AGAATTTAAAAAATAATATA+AGG | + | chr5_1:48006963-48006982 | Msa0734260:intron | 5.0% |
| !! | TAGTAAAAAAATAAAAATAT+AGG | + | chr5_1:48006994-48007013 | Msa0734260:intron | 5.0% |
| !!! | AAAAACATTTTTTAATAAAT+AGG | - | chr5_1:48007526-48007545 | None:intergenic | 5.0% |
| GATCACCTATGGGGCCATTT+AGG | - | chr5_1:48002643-48002662 | None:intergenic | 50.0% | |
| AAATGGCCCCATAGGTGATC+AGG | + | chr5_1:48002643-48002662 | Msa0734260:CDS | 50.0% | |
| ! | TATAGGTGACGGTGTCGAGT+CGG | + | chr5_1:48002787-48002806 | Msa0734260:intron | 50.0% |
| TATGAAGCACGGACACTCCT+CGG | - | chr5_1:48002859-48002878 | None:intergenic | 50.0% | |
| GGGCACAACTCCTACTTAAC+TGG | + | chr5_1:48003309-48003328 | Msa0734260:CDS | 50.0% | |
| GATGTGGAAGTTCGTCATGG+AGG | + | chr5_1:48003435-48003454 | Msa0734260:CDS | 50.0% | |
| ACACGACACGTGTCTAACAC+GGG | - | chr5_1:48003516-48003535 | None:intergenic | 50.0% | |
| GACACGACACGTGTCTAACA+CGG | - | chr5_1:48003517-48003536 | None:intergenic | 50.0% | |
| TTGGCGACTTTGCGTTGAAG+AGG | - | chr5_1:48003887-48003906 | None:intergenic | 50.0% | |
| CCCTTCACCAGAATCGTTGA+AGG | + | chr5_1:48004054-48004073 | Msa0734260:CDS | 50.0% | |
| CCCTTCAACGATTCTGGTGA+AGG | - | chr5_1:48004058-48004077 | None:intergenic | 50.0% | |
| GAATCCACACGTGAACCCTT+TGG | - | chr5_1:48005027-48005046 | None:intergenic | 50.0% | |
| ACGTATACATGGGTGAAGGG+TGG | + | chr5_1:48005918-48005937 | Msa0734260:CDS | 50.0% | |
| ! | TCCGCCTGATTTTCGTGTAC+AGG | + | chr5_1:48005979-48005998 | Msa0734260:CDS | 50.0% |
| GCAGACTAAGCTTGAGGTTG+AGG | + | chr5_1:48007051-48007070 | Msa0734260:intron | 50.0% | |
| ! | TAGTGGATAGGCCTAGGCTT+AGG | + | chr5_1:48007415-48007434 | Msa0734260:intron | 50.0% |
| TGGCCTGAAAACCTACTTCC+AGG | - | chr5_1:48007761-48007780 | None:intergenic | 50.0% | |
| ATAGGTCATAGGCCAGACTC+AGG | + | chr5_1:48007829-48007848 | Msa0734260:intron | 50.0% | |
| TATAGGGGTGGGAATAGGCT+AGG | - | chr5_1:48007906-48007925 | None:intergenic | 50.0% | |
| AGTCAAAAAAGGGGGCTGTG+TGG | - | chr5_1:48008181-48008200 | None:intergenic | 50.0% | |
| AATTCGTGATGCACTCGGGA+TGG | + | chr5_1:48008266-48008285 | Msa0734260:intron | 50.0% | |
| CTAGGACCAAGGAAGATGAG+TGG | + | chr5_1:48008504-48008523 | Msa0734260:CDS | 50.0% | |
| AAGATGAGTGGGTCCCAGTT+TGG | + | chr5_1:48008516-48008535 | Msa0734260:CDS | 50.0% | |
| CTTGAGGGGGAGACAACACT+AGG | - | chr5_1:48002270-48002289 | None:intergenic | 55.0% | |
| GGTGACCTAAATGGCCCCAT+AGG | + | chr5_1:48002635-48002654 | Msa0734260:CDS | 55.0% | |
| GGATTAGGTGTGGTGTGTCC+TGG | - | chr5_1:48002838-48002857 | None:intergenic | 55.0% | |
| GACACACCACACCTAATCCG+AGG | + | chr5_1:48002839-48002858 | Msa0734260:intron | 55.0% | |
| ! | GACACTCCTCGGATTAGGTG+TGG | - | chr5_1:48002848-48002867 | None:intergenic | 55.0% |
| CACGACACGTGTCTAACACG+GGG | - | chr5_1:48003515-48003534 | None:intergenic | 55.0% | |
| !! | ATGTGTTGGTGTCGTGTCGG+CGG | - | chr5_1:48003545-48003564 | None:intergenic | 55.0% |
| GTCAGTGTCCGTTTCGTGTC+CGG | + | chr5_1:48003616-48003635 | Msa0734260:intron | 55.0% | |
| CACGGATACCGGACACGAAA+CGG | - | chr5_1:48003627-48003646 | None:intergenic | 55.0% | |
| GTCCGGTATCCGTGCTTCAT+AGG | + | chr5_1:48003633-48003652 | Msa0734260:intron | 55.0% | |
| GCGACTTTGCGTTGAAGAGG+TGG | - | chr5_1:48003884-48003903 | None:intergenic | 55.0% | |
| TGACTTTCAGGAGACTCCGG+TGG | - | chr5_1:48004103-48004122 | None:intergenic | 55.0% | |
| GGGTGATGAAAGTGAGGAGG+AGG | + | chr5_1:48004483-48004502 | Msa0734260:CDS | 55.0% | |
| GAGGAGGAGGATGAGACTCT+TGG | + | chr5_1:48004496-48004515 | Msa0734260:CDS | 55.0% | |
| GGGTTGGGAATAGGTCAGGT+CGG | + | chr5_1:48006425-48006444 | Msa0734260:intron | 55.0% | |
| AATAGGTCAGGTCGGCCTAC+AGG | + | chr5_1:48006433-48006452 | Msa0734260:intron | 55.0% | |
| ATAGGTCAGGTCGGCCTACA+GGG | + | chr5_1:48006434-48006453 | Msa0734260:intron | 55.0% | |
| GGCTGTGCAGACTAAGCTTG+AGG | + | chr5_1:48007045-48007064 | Msa0734260:intron | 55.0% | |
| TGCATCCCCTGGATACAAGC+TGG | + | chr5_1:48007343-48007362 | Msa0734260:intron | 55.0% | |
| TGGGACCCACTCATCTTCCT+TGG | - | chr5_1:48008513-48008532 | None:intergenic | 55.0% | |
| ! | GTGGGTCCCAGTTTGGAATG+AGG | + | chr5_1:48008523-48008542 | Msa0734260:CDS | 55.0% |
| ! | TGACGGTGTCGAGTCGGTGT+CGG | + | chr5_1:48002793-48002812 | Msa0734260:intron | 60.0% |
| CACGACACATGTCCGACACC+AGG | + | chr5_1:48002817-48002836 | Msa0734260:intron | 60.0% | |
| GGTGTGGTGTGTCCTGGTGT+CGG | - | chr5_1:48002832-48002851 | None:intergenic | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | - | chr5_1:48002853-48002872 | None:intergenic | 60.0% | |
| TAGGTCAGGTCGGCCTACAG+GGG | + | chr5_1:48006435-48006454 | Msa0734260:intron | 60.0% | |
| ! | TTGCCAGGACCCTGGGTTAG+AGG | + | chr5_1:48006474-48006493 | Msa0734260:intron | 60.0% |
| ! | TGCCAGGACCCTGGGTTAGA+GGG | + | chr5_1:48006475-48006494 | Msa0734260:intron | 60.0% |
| AACCCTCTAACCCAGGGTCC+TGG | - | chr5_1:48006480-48006499 | None:intergenic | 60.0% | |
| CGGAGCCAGCTTGTATCCAG+GGG | - | chr5_1:48007351-48007370 | None:intergenic | 60.0% | |
| GCGGAGCCAGCTTGTATCCA+GGG | - | chr5_1:48007352-48007371 | None:intergenic | 60.0% | |
| AGGTCAGGCCAAAACAGGCC+AGG | - | chr5_1:48007387-48007406 | None:intergenic | 60.0% | |
| TATCAGACCCGTGCGGCGCA+CGG | + | chr5_1:48001298-48001317 | Msa0734260:intron | 65.0% | |
| ATTCCAACCCGTGCGCCGCA+CGG | - | chr5_1:48001309-48001328 | None:intergenic | 65.0% | |
| !! | TGGTGTCGTGTCGGCGGTGT+CGG | - | chr5_1:48003539-48003558 | None:intergenic | 65.0% |
| ! | CACTGGCTGTAGGCCCCTGT+AGG | - | chr5_1:48006451-48006470 | None:intergenic | 65.0% |
| CTACAGGGGCCTACAGCCAG+TGG | + | chr5_1:48006449-48006468 | Msa0734260:intron | 65.0% | |
| ! | CTGGCAACGCCACTGGCTGT+AGG | - | chr5_1:48006461-48006480 | None:intergenic | 65.0% |
| CTACAGCCAGTGGCGTTGCC+AGG | + | chr5_1:48006459-48006478 | Msa0734260:intron | 65.0% | |
| AGTGGCGTTGCCAGGACCCT+GGG | + | chr5_1:48006467-48006486 | Msa0734260:intron | 65.0% | |
| GGCGGAGCCAGCTTGTATCC+AGG | - | chr5_1:48007353-48007372 | None:intergenic | 65.0% | |
| AACAGGCCAGGCCGTAGGCA+GGG | - | chr5_1:48007375-48007394 | None:intergenic | 65.0% | |
| AAACAGGCCAGGCCGTAGGC+AGG | - | chr5_1:48007376-48007395 | None:intergenic | 65.0% | |
| ! | GCCTACGGCCTGGCCTGTTT+TGG | + | chr5_1:48007376-48007395 | Msa0734260:intron | 65.0% |
| GCCAAAACAGGCCAGGCCGT+AGG | - | chr5_1:48007380-48007399 | None:intergenic | 65.0% | |
| GTGCGCCGCACGGGTCTGAT+AGG | - | chr5_1:48001299-48001318 | None:intergenic | 70.0% | |
| ATCAGACCCGTGCGGCGCAC+GGG | + | chr5_1:48001299-48001318 | Msa0734260:intron | 70.0% | |
| TTCCAACCCGTGCGCCGCAC+GGG | - | chr5_1:48001308-48001327 | None:intergenic | 70.0% | |
| CAGGGTCCTGGCAACGCCAC+TGG | - | chr5_1:48006468-48006487 | None:intergenic | 70.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | + | chr5_1:48006466-48006485 | Msa0734260:intron | 70.0% | |
| GGGGGTTCAGCTGCATCCCC+TGG | + | chr5_1:48007332-48007351 | Msa0734260:intron | 70.0% | |
| ACAGGCCAGGCCGTAGGCAG+GGG | - | chr5_1:48007374-48007393 | None:intergenic | 70.0% | |
| ! | GCTGGCTCCGCCCCTGCCTA+CGG | + | chr5_1:48007361-48007380 | Msa0734260:intron | 75.0% |
| ! | GACCCGTGCGGCGCACGGGT+TGG | + | chr5_1:48001303-48001322 | Msa0734260:intron | 80.0% |
| ! | CTCCGCCCCTGCCTACGGCC+TGG | + | chr5_1:48007366-48007385 | Msa0734260:intron | 80.0% |
| ! | GGCCAGGCCGTAGGCAGGGG+CGG | - | chr5_1:48007371-48007390 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 48001011 | 48008952 | 48001011 | ID=Msa0734260;Name=Msa0734260 |
| chr5_1 | mRNA | 48001011 | 48008952 | 48001011 | ID=Msa0734260-mRNA-1;Parent=Msa0734260;Name=Msa0734260-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.9|0.81|0.90|0.9|0.81|11|172|591 |
| chr5_1 | exon | 48001011 | 48001141 | 48001011 | ID=Msa0734260-mRNA-1:exon:13755;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48002397 | 48002664 | 48002397 | ID=Msa0734260-mRNA-1:exon:13756;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48003261 | 48003457 | 48003261 | ID=Msa0734260-mRNA-1:exon:13757;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48003772 | 48003907 | 48003772 | ID=Msa0734260-mRNA-1:exon:13758;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48003989 | 48004195 | 48003989 | ID=Msa0734260-mRNA-1:exon:13759;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48004475 | 48004665 | 48004475 | ID=Msa0734260-mRNA-1:exon:13760;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48004993 | 48005110 | 48004993 | ID=Msa0734260-mRNA-1:exon:13761;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48005649 | 48005789 | 48005649 | ID=Msa0734260-mRNA-1:exon:13762;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48005914 | 48006000 | 48005914 | ID=Msa0734260-mRNA-1:exon:13763;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48008461 | 48008849 | 48008461 | ID=Msa0734260-mRNA-1:exon:13764;Parent=Msa0734260-mRNA-1 |
| chr5_1 | exon | 48008870 | 48008952 | 48008870 | ID=Msa0734260-mRNA-1:exon:13765;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48001011 | 48001141 | 48001011 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48002397 | 48002664 | 48002397 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48003261 | 48003457 | 48003261 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48003772 | 48003907 | 48003772 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48003989 | 48004195 | 48003989 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48004475 | 48004665 | 48004475 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48004993 | 48005110 | 48004993 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48005649 | 48005789 | 48005649 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48005914 | 48006000 | 48005914 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | CDS | 48008461 | 48008760 | 48008461 | ID=Msa0734260-mRNA-1:cds;Parent=Msa0734260-mRNA-1 |
| chr5_1 | three_prime_UTR | 48008761 | 48008849 | 48008761 | ID=Msa0734260-mRNA-1:three_prime_utr;Parent=Msa0734260-mRNA-1 |
| chr5_1 | three_prime_UTR | 48008870 | 48008952 | 48008870 | ID=Msa0734260-mRNA-1:three_prime_utr;Parent=Msa0734260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
