AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813210 MtrunA17_Chr5g0430371 96.579 380 11 1 22 399 22 401 0.0 754
Msa0813210 MtrunA17_Chr3g0105301 67.273 385 116 4 15 399 4 378 0.0 550
Msa0813210 MtrunA17_Chr2g0283581 50.964 363 149 7 38 397 22 358 3.28e-126 368
Msa0813210 MtrunA17_Chr4g0041011 45.269 391 178 7 7 397 9 363 2.05e-119 351
Msa0813210 MtrunA17_Chr3g0097891 49.422 346 153 5 53 398 28 351 2.34e-119 350
Msa0813210 MtrunA17_Chr4g0045951 46.939 392 169 7 8 398 10 363 3.69e-119 350
Msa0813210 MtrunA17_Chr4g0045941 49.580 357 152 6 42 398 23 351 6.66e-119 349
Msa0813210 MtrunA17_Chr2g0325481 47.230 343 156 4 56 398 50 367 2.39e-116 343
Msa0813210 MtrunA17_Chr3g0085081 46.875 352 162 5 46 397 22 348 2.51e-115 340
Msa0813210 MtrunA17_Chr3g0091031 45.954 346 163 4 52 397 27 348 4.96e-113 334
Msa0813210 MtrunA17_Chr3g0085071 45.821 347 164 4 51 397 41 363 1.43e-111 331
Msa0813210 MtrunA17_Chr2g0314801 45.676 370 175 8 29 394 3 350 1.24e-110 328
Msa0813210 MtrunA17_Chr5g0413851 43.577 397 175 10 10 397 3 359 5.40e-107 319
Msa0813210 MtrunA17_Chr1g0171171 39.601 351 189 5 50 397 45 375 3.01e-97 295
Msa0813210 MtrunA17_Chr1g0210771 39.481 347 186 5 54 397 57 382 8.17e-97 294
Msa0813210 MtrunA17_Chr7g0258851 40.390 359 180 7 56 398 248 588 1.74e-95 297
Msa0813210 MtrunA17_Chr2g0314791 43.099 355 159 9 53 398 26 346 1.43e-93 284
Msa0813210 MtrunA17_Chr1g0175671 37.435 382 205 7 33 398 147 510 2.94e-93 290
Msa0813210 MtrunA17_Chr1g0213281 38.889 360 193 6 53 399 172 517 2.63e-92 287
Msa0813210 MtrunA17_Chr5g0413271 37.709 358 203 4 46 398 135 477 8.45e-92 285
Msa0813210 MtrunA17_Chr4g0068111 39.674 368 192 7 45 398 103 454 8.25e-91 281
Msa0813210 MtrunA17_Chr4g0071391 36.798 356 197 6 54 397 107 446 1.35e-85 268
Msa0813210 MtrunA17_Chr4g0006991 37.853 354 196 9 56 397 86 427 5.66e-84 262
Msa0813210 MtrunA17_Chr7g0269991 37.960 353 186 8 56 397 137 467 7.15e-84 263
Msa0813210 MtrunA17_Chr8g0368461 35.550 391 203 8 35 398 161 529 3.86e-83 263
Msa0813210 MtrunA17_Chr3g0113671 38.268 358 197 7 53 397 103 449 1.04e-82 260
Msa0813210 MtrunA17_Chr7g0259711 36.119 371 183 9 55 398 90 433 4.25e-81 256
Msa0813210 MtrunA17_Chr4g0005491 36.011 361 205 8 54 399 60 409 6.19e-80 251
Msa0813210 MtrunA17_Chr3g0114101 38.056 360 191 9 56 399 89 432 3.27e-79 250
Msa0813210 MtrunA17_Chr5g0437291 36.769 359 200 8 56 398 165 512 4.57e-79 252
Msa0813210 MtrunA17_Chr8g0360521 35.440 364 208 8 47 398 62 410 4.59e-79 249
Msa0813210 MtrunA17_Chr2g0287901 37.088 364 187 10 55 398 96 437 1.45e-78 249
Msa0813210 MtrunA17_Chr5g0437601 34.368 419 236 11 3 399 25 426 2.34e-78 248
Msa0813210 MtrunA17_Chr7g0243301 34.444 360 210 7 54 398 62 410 4.76e-75 239
Msa0813210 MtrunA17_Chr7g0242701 37.326 359 199 10 52 397 82 427 7.33e-75 239
Msa0813210 MtrunA17_Chr4g0005481 36.000 350 201 6 55 394 107 443 2.67e-71 230
Msa0813210 MtrunA17_Chr3g0126021 33.508 382 205 10 35 398 110 460 7.23e-70 227
Msa0813210 MtrunA17_Chr1g0209921 43.396 265 141 8 18 278 7 266 4.36e-61 198
Msa0813210 MtrunA17_Chr8g0384151 31.522 368 202 7 50 398 81 417 1.48e-60 202
Msa0813210 MtrunA17_Chr1g0188191 30.239 377 227 11 38 393 216 577 2.13e-46 167
Msa0813210 MtrunA17_Chr8g0347321 31.880 367 221 12 50 397 83 439 4.35e-46 164
Msa0813210 MtrunA17_Chr5g0429211 82.222 90 16 0 105 194 189 278 8.48e-45 156
Msa0813210 MtrunA17_Chr5g0414051 28.715 397 251 10 11 393 38 416 3.73e-43 155
Msa0813210 MtrunA17_Chr5g0414061 29.558 362 226 10 48 393 86 434 4.02e-43 156
Msa0813210 MtrunA17_Chr5g0414091 30.387 362 225 10 48 393 77 427 9.49e-43 155
Msa0813210 MtrunA17_Chr8g0391481 30.084 359 219 13 53 393 24 368 1.51e-42 153
Msa0813210 MtrunA17_Chr6g0456691 29.722 360 221 10 54 397 76 419 2.28e-42 154
Msa0813210 MtrunA17_Chr6g0476041 28.191 376 231 11 43 394 151 511 2.36e-42 155
Msa0813210 MtrunA17_Chr7g0226991 27.809 356 231 9 53 393 54 398 9.10e-42 151
Msa0813210 MtrunA17_Chr8g0384421 28.030 396 211 14 38 397 115 472 1.64e-40 149
Msa0813210 MtrunA17_Chr1g0178081 35.749 207 113 5 50 236 44 250 4.08e-38 140
Msa0813210 MtrunA17_Chr1g0178081 48.649 74 30 2 328 398 274 342 5.37e-15 75.9
Msa0813210 MtrunA17_Chr6g0456681 27.692 390 212 13 46 397 51 408 4.76e-38 142
Msa0813210 MtrunA17_Chr2g0283851 30.504 377 202 16 54 397 52 401 1.77e-37 140
Msa0813210 MtrunA17_Chr8g0387921 27.838 370 207 10 56 393 74 415 2.32e-37 140
Msa0813210 MtrunA17_Chr5g0414041 28.283 396 255 11 16 393 45 429 7.70e-37 139
Msa0813210 MtrunA17_Chr3g0140371 27.473 364 217 11 54 393 16 356 1.11e-36 137
Msa0813210 MtrunA17_Chr4g0070341 28.571 371 207 17 55 397 131 471 3.04e-36 138
Msa0813210 MtrunA17_Chr6g0451321 28.238 386 234 13 33 397 94 457 5.93e-36 137
Msa0813210 MtrunA17_Chr4g0049421 27.095 358 224 11 56 393 48 388 8.07e-35 132
Msa0813210 MtrunA17_Chr5g0429201 93.220 59 4 0 281 339 22 80 2.42e-34 122
Msa0813210 MtrunA17_Chr6g0455901 27.968 379 213 16 47 393 62 412 3.92e-33 128
Msa0813210 MtrunA17_Chr7g0221291 53.333 90 42 0 56 145 79 168 4.45e-28 108
Msa0813210 MtrunA17_Chr7g0221271 41.732 127 74 0 56 182 79 205 1.63e-27 108
Msa0813210 MtrunA17_Chr3g0085101 45.000 120 53 3 241 360 1 107 1.35e-26 102
Msa0813210 MtrunA17_Chr5g0429191 95.556 45 2 0 346 390 1 45 9.87e-24 92.8
Msa0813210 MtrunA17_Chr2g0287931 38.710 124 63 3 117 227 3 126 1.05e-23 95.5
Msa0813210 MtrunA17_Chr1g0209931 37.624 101 47 2 298 398 9 93 1.80e-17 77.4
Msa0813210 MtrunA17_Chr2g0287911 51.724 58 21 2 54 111 59 109 6.18e-12 62.0
Msa0813210 MtrunA17_Chr7g0221281 26.887 212 126 10 193 393 39 232 1.39e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813210 AT5G58600.1 54.657 408 167 4 2 399 3 402 2.12e-168 477
Msa0813210 AT2G30010.1 58.405 351 139 4 52 399 52 398 1.22e-155 445
Msa0813210 AT2G30010.2 58.405 351 139 4 52 399 95 441 1.61e-155 446
Msa0813210 AT1G29050.1 49.292 353 149 4 48 397 53 378 2.21e-123 362
Msa0813210 AT2G34070.1 48.732 355 157 5 44 397 53 383 2.97e-120 354
Msa0813210 AT5G58600.2 53.659 287 123 3 2 278 3 289 1.54e-116 341
Msa0813210 AT2G31110.2 47.953 342 154 4 56 397 45 362 4.30e-114 338
Msa0813210 AT2G42570.1 46.939 343 158 5 56 398 47 365 9.22e-114 337
Msa0813210 AT2G30900.1 47.977 346 157 7 56 399 43 367 4.19e-111 330
Msa0813210 AT3G14850.2 45.133 339 165 5 56 394 34 351 1.01e-105 316
Msa0813210 AT1G78710.1 43.429 350 169 8 52 398 34 357 1.00e-100 303
Msa0813210 AT3G54260.1 41.108 343 174 6 56 393 51 370 4.79e-95 290
Msa0813210 AT5G06700.1 39.385 358 187 7 55 398 254 595 1.86e-93 293
Msa0813210 AT3G12060.1 38.667 375 193 9 42 398 181 536 2.97e-92 288
Msa0813210 AT5G20590.1 40.056 357 183 9 56 398 141 480 2.30e-90 281
Msa0813210 AT1G60790.1 38.859 368 192 8 48 398 182 533 1.05e-89 281
Msa0813210 AT5G49340.1 38.421 380 185 11 44 398 87 442 2.37e-87 272
Msa0813210 AT5G01360.2 38.701 354 194 8 56 397 36 378 2.83e-85 265
Msa0813210 AT2G34070.2 47.253 273 119 5 126 397 1 249 3.39e-85 260
Msa0813210 AT5G01360.1 38.701 354 194 8 56 397 92 434 2.05e-84 264
Msa0813210 AT3G62390.1 35.813 363 203 8 48 399 130 473 4.07e-84 265
Msa0813210 AT3G55990.1 38.028 355 198 6 56 398 140 484 2.70e-82 260
Msa0813210 AT2G31110.3 50.459 218 107 1 56 273 45 261 8.16e-79 244
Msa0813210 AT5G19160.1 37.500 368 187 10 54 398 97 444 3.33e-78 249
Msa0813210 AT1G73140.1 35.467 375 208 10 41 398 49 406 3.83e-78 247
Msa0813210 AT2G40150.1 36.264 364 198 8 56 398 71 421 1.09e-77 246
Msa0813210 AT2G40320.1 34.135 416 239 9 3 399 25 424 1.65e-77 246
Msa0813210 AT2G30900.2 51.818 220 103 3 56 273 43 261 2.87e-76 238
Msa0813210 AT2G40160.1 35.000 360 207 9 56 399 77 425 1.01e-75 241
Msa0813210 AT5G01620.2 34.916 358 209 6 48 394 102 446 1.79e-75 241
Msa0813210 AT5G01620.1 34.916 358 209 6 48 394 102 446 1.79e-75 241
Msa0813210 AT5G01620.3 34.916 358 209 6 48 394 110 454 1.99e-75 241
Msa0813210 AT3G11030.1 36.288 361 197 8 56 399 106 450 3.47e-75 241
Msa0813210 AT2G40160.2 35.000 360 207 9 56 399 77 425 3.75e-75 240
Msa0813210 AT3G06080.2 37.088 364 191 11 54 398 101 445 3.87e-75 241
Msa0813210 AT3G11570.1 36.919 344 179 7 72 398 98 420 1.80e-72 233
Msa0813210 AT2G38320.1 32.787 366 220 7 48 398 51 405 2.70e-72 232
Msa0813210 AT3G14850.1 41.636 269 136 5 126 394 1 248 2.23e-70 222
Msa0813210 AT5G06230.2 36.337 344 183 8 71 398 42 365 6.41e-68 219
Msa0813210 AT5G06230.1 36.337 344 183 8 71 398 83 406 9.38e-68 220
Msa0813210 AT1G48880.1 33.240 358 196 9 54 398 113 440 6.31e-65 214
Msa0813210 AT2G31110.1 46.522 230 99 4 168 397 9 214 2.30e-64 205
Msa0813210 AT2G38320.2 32.727 330 197 6 83 398 4 322 3.06e-63 206
Msa0813210 AT5G20590.2 40.928 237 127 4 56 279 141 377 1.29e-60 201
Msa0813210 AT3G62390.2 35.802 243 145 3 48 279 130 372 3.32e-58 196
Msa0813210 AT5G19160.2 38.912 239 133 3 54 279 97 335 3.88e-58 193
Msa0813210 AT1G78710.2 33.711 353 146 13 52 398 27 297 2.29e-53 179
Msa0813210 AT3G06080.1 36.250 240 138 4 54 279 101 339 1.31e-50 174
Msa0813210 AT2G40160.3 35.043 234 141 4 56 278 77 310 1.63e-49 170
Msa0813210 AT5G06230.3 36.036 222 129 3 71 279 83 304 1.25e-46 162
Msa0813210 AT4G25360.1 31.044 364 213 12 53 393 172 520 1.26e-45 165
Msa0813210 AT4G25360.2 31.044 364 213 12 53 393 172 520 1.26e-45 165
Msa0813210 AT1G01430.1 29.024 379 224 9 46 398 89 448 1.38e-43 158
Msa0813210 AT5G51640.1 29.863 365 217 11 53 393 135 484 1.57e-43 159
Msa0813210 AT2G14530.1 28.193 415 240 14 12 397 21 406 5.70e-42 152
Msa0813210 AT5G64020.1 29.474 380 202 15 56 397 57 408 2.79e-40 148
Msa0813210 AT1G70230.1 28.255 361 220 10 52 397 75 411 2.89e-40 148
Msa0813210 AT5G20680.6 28.455 369 210 13 55 397 117 457 1.96e-38 144
Msa0813210 AT5G15900.1 29.189 370 217 12 51 397 62 409 3.76e-38 142
Msa0813210 AT5G20680.4 28.455 369 210 13 55 397 211 551 4.20e-38 144
Msa0813210 AT5G20680.1 28.455 369 210 13 55 397 211 551 4.20e-38 144
Msa0813210 AT5G20680.3 28.455 369 210 13 55 397 211 551 4.20e-38 144
Msa0813210 AT5G20680.5 28.455 369 210 13 55 397 211 551 4.20e-38 144
Msa0813210 AT5G15900.2 29.189 370 217 12 51 397 81 428 4.52e-38 142
Msa0813210 AT5G20680.2 28.261 368 212 13 55 397 193 533 5.06e-38 144
Msa0813210 AT5G15890.1 28.610 374 229 10 36 393 167 518 2.26e-37 142
Msa0813210 AT2G37720.1 28.158 380 197 14 55 397 142 482 2.62e-37 141
Msa0813210 AT4G01080.1 28.032 371 219 9 46 393 81 426 3.78e-37 140
Msa0813210 AT4G11090.1 28.451 355 225 10 56 393 79 421 1.92e-36 138
Msa0813210 AT5G64470.2 29.459 370 201 15 56 393 55 396 4.52e-36 136
Msa0813210 AT3G28150.1 28.177 362 219 9 56 397 70 410 1.46e-35 135
Msa0813210 AT5G64470.3 29.076 368 199 14 56 393 55 390 3.24e-35 134
Msa0813210 AT4G23790.1 29.752 363 216 12 54 393 77 423 9.13e-35 133
Msa0813210 AT3G02440.1 28.767 365 206 15 56 393 127 464 5.13e-34 132
Msa0813210 AT3G02440.2 28.767 365 206 15 56 393 135 472 6.06e-34 132
Msa0813210 AT5G64470.4 28.682 258 143 10 56 285 55 299 1.22e-20 92.0
Msa0813210 AT5G64470.1 28.682 258 143 10 56 285 55 299 1.39e-20 92.0

Find 91 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTAGAAGATTGATAAAA+AGG 0.160341 5_3:-43736872 None:intergenic
TCTCTCCACCTTTACATTCT+TGG 0.205076 5_3:+43737413 Msa0813210:CDS
ACTCAATTCACCACTGTAAA+TGG 0.243775 5_3:-43740532 None:intergenic
TAGAACCCATGTGTTATTTC+AGG 0.260292 5_3:+43738627 Msa0813210:CDS
ATTATTGTTTGCTTTCAAAC+TGG 0.270275 5_3:-43736798 None:intergenic
AATGAAAAGAAGAAGCTATT+TGG 0.273436 5_3:-43736730 None:intergenic
GTATGAAAACATGGGCTAAT+TGG 0.283621 5_3:+43738581 Msa0813210:CDS
GGTTCTACTTCTGTCAATAT+TGG 0.289055 5_3:-43738611 None:intergenic
GCTACCAAACGATCCATATC+AGG 0.293082 5_3:-43738547 None:intergenic
TGTAGCCATTGGTGTCTTCC+TGG 0.300852 5_3:+43740591 Msa0813210:CDS
TTCATTTGACAATTAAATTC+CGG 0.318356 5_3:-43736908 None:intergenic
TTCCTGGTTTGCCTGATACT+TGG 0.320303 5_3:+43740607 Msa0813210:CDS
GTGGTTTCCAACGATATTTA+AGG 0.330393 5_3:-43736952 None:intergenic
ACAAATGAGAGTAGTTAATA+TGG 0.332485 5_3:+43740431 Msa0813210:CDS
TCATTTGACAATTAAATTCC+GGG 0.335485 5_3:-43736907 None:intergenic
AGGTGGGATTATGTAGAATT+AGG 0.337120 5_3:+43738511 Msa0813210:intron
ACATCAACATCTACTAAATA+AGG 0.339244 5_3:-43738229 None:intergenic
TATGGATCGTTTGGTAGCTT+TGG 0.346986 5_3:+43738552 Msa0813210:CDS
AAGTTCATTAGTACTTCATT+AGG 0.348991 5_3:+43740665 Msa0813210:three_prime_UTR
AGTAGTTGATTCCAAGTATC+AGG 0.351359 5_3:-43740618 None:intergenic
AGTAGTTGTGCATTGTTTGT+AGG 0.372824 5_3:+43736824 Msa0813210:CDS
TGCATTGTTTGTAGGAAGTT+GGG 0.373791 5_3:+43736832 Msa0813210:CDS
GTGCATTGTTTGTAGGAAGT+TGG 0.388888 5_3:+43736831 Msa0813210:CDS
ATGTGGAGACACAATTGGTT+AGG 0.391848 5_3:+43737382 Msa0813210:CDS
CTACAATCAGCTGAGTGATC+AGG 0.397666 5_3:-43740573 None:intergenic
ACCAATTGTGTCTCCACATT+AGG 0.401722 5_3:-43737378 None:intergenic
TATGAAAACATGGGCTAATT+GGG 0.412563 5_3:+43738582 Msa0813210:CDS
TTACCCTGATATGGATCGTT+TGG 0.418196 5_3:+43738543 Msa0813210:CDS
TTATTGTTTGCTTTCAAACT+GGG 0.418737 5_3:-43736797 None:intergenic
AACTTGTGATGAGCTCAAAT+TGG 0.431782 5_3:+43740884 Msa0813210:three_prime_UTR
TATTTAAGGTAATCAGAATC+AGG 0.448162 5_3:-43736938 None:intergenic
GAATTTAATTGTCAAATGAA+TGG 0.454089 5_3:+43736911 Msa0813210:CDS
CTGATTACCTTAAATATCGT+TGG 0.455897 5_3:+43736945 Msa0813210:CDS
CGTTTGGTAGCTTTGGAAAG+AGG 0.463824 5_3:+43738559 Msa0813210:CDS
TACAGTGTAAATTTCTCAAA+AGG 0.464861 5_3:+43740812 Msa0813210:three_prime_UTR
TCTGTTGTTGTGCCACTGAT+TGG 0.469702 5_3:-43740378 None:intergenic
TGTGGAGACACAATTGGTTA+GGG 0.482547 5_3:+43737383 Msa0813210:CDS
TTATATGTAGCGAAAATGAA+TGG 0.497075 5_3:+43740292 Msa0813210:intron
ATATGGTATATGCAGGACTA+TGG 0.498461 5_3:+43738181 Msa0813210:intron
CACTCAATTGTGAGCTCCCA+AGG 0.498988 5_3:+43736972 Msa0813210:CDS
ACCTAATGTGGAGACACAAT+TGG 0.502101 5_3:+43737377 Msa0813210:CDS
AGTGGCACAACAACAGACTT+TGG 0.502553 5_3:+43740384 Msa0813210:CDS
TTATCAGAAATGAGGAAAGA+TGG 0.503627 5_3:+43740501 Msa0813210:CDS
ATGTTTGTTGGTGATTCGTT+AGG 0.505244 5_3:+43737309 Msa0813210:CDS
TGGGATTATGTAGAATTAGG+AGG 0.519702 5_3:+43738514 Msa0813210:CDS
TAGACTCACCAAGAATGTAA+AGG 0.520499 5_3:-43737421 None:intergenic
GTAGATGTTGATGTGGTCCA+AGG 0.533368 5_3:+43738238 Msa0813210:CDS
TGGAAAGAGGTATGAAAACA+TGG 0.533428 5_3:+43738572 Msa0813210:CDS
TACAATCAGCTGAGTGATCA+GGG 0.543582 5_3:-43740572 None:intergenic
GGGATTATGTAGAATTAGGA+GGG 0.546280 5_3:+43738515 Msa0813210:CDS
AATGGAATTCAGCTGTTGGT+AGG 0.546854 5_3:+43740310 Msa0813210:CDS
GTGATGTCAAGAAGATATGC+AGG 0.548563 5_3:-43740474 None:intergenic
TTATTTAGTAGATGTTGATG+TGG 0.549664 5_3:+43738231 Msa0813210:CDS
TTCCAAGTATCAGGCAAACC+AGG 0.553910 5_3:-43740609 None:intergenic
CTTGATGAGGCAGATAAGAA+TGG 0.554006 5_3:+43738277 Msa0813210:CDS
TTGTTGGTGATTCGTTAGGA+AGG 0.556705 5_3:+43737313 Msa0813210:CDS
GGACATTGGTGGAGTCATCA+AGG 0.558127 5_3:+43738340 Msa0813210:CDS
ATTAATTAATCTAGCAACAA+AGG 0.558855 5_3:-43740773 None:intergenic
TCACAATGTTATCAGAAATG+AGG 0.559566 5_3:+43740493 Msa0813210:CDS
ATTCGTTAGGAAGGAATCAA+TGG 0.559645 5_3:+43737322 Msa0813210:CDS
TGTTCAACACAGGACATTGG+TGG 0.565491 5_3:+43738329 Msa0813210:CDS
ATGGAATTCAGCTGTTGGTA+GGG 0.570533 5_3:+43740311 Msa0813210:CDS
AGTCATCAAGGATCACTTCA+AGG 0.572350 5_3:+43738352 Msa0813210:CDS
AATTCACCACTGTAAATGGA+AGG 0.576652 5_3:-43740528 None:intergenic
ATCTGCTGCAGCACCTAATG+TGG 0.578997 5_3:+43737365 Msa0813210:CDS
ACTCAGCTGATTGTAGCCAT+TGG 0.580415 5_3:+43740580 Msa0813210:CDS
AATGAATGGAATTCAGCTGT+TGG 0.581780 5_3:+43740306 Msa0813210:CDS
GAGTCCTTACTCATAATGTG+TGG 0.582644 5_3:-43738659 None:intergenic
CAGATAAGAATGGTGACACA+TGG 0.592161 5_3:+43738287 Msa0813210:CDS
GGCACAACAACAGACTTTGG+AGG 0.599898 5_3:+43740387 Msa0813210:CDS
CTACCAAACGATCCATATCA+GGG 0.604629 5_3:-43738546 None:intergenic
CTTGGGAGCTCACAATTGAG+TGG 0.611295 5_3:-43736971 None:intergenic
GAAAACATGGGCTAATTGGG+TGG 0.618678 5_3:+43738585 Msa0813210:CDS
TAGATGTTGATGTGGTCCAA+GGG 0.619218 5_3:+43738239 Msa0813210:CDS
ACAACAACAGACTTTGGAGG+AGG 0.621376 5_3:+43740390 Msa0813210:CDS
AGTCCTTACTCATAATGTGT+GGG 0.625224 5_3:-43738658 None:intergenic
TAGCTGTGATATCATAGACC+CGG 0.626468 5_3:+43736889 Msa0813210:CDS
AAATTGCCTGAAATAACACA+TGG 0.627656 5_3:-43738633 None:intergenic
GTCATCAAGGATCACTTCAA+GGG 0.627727 5_3:+43738353 Msa0813210:CDS
TGTTGTTCAACACAGGACAT+TGG 0.631668 5_3:+43738326 Msa0813210:CDS
GGAAAGAGGTATGAAAACAT+GGG 0.632297 5_3:+43738573 Msa0813210:CDS
AAGAATGTAAAGGTGGAGAG+AGG 0.636711 5_3:-43737411 None:intergenic
ACTCACCAAGAATGTAAAGG+TGG 0.640751 5_3:-43737418 None:intergenic
ACGACGACAAAGAATTGCTA+CGG 0.646290 5_3:+43740345 Msa0813210:CDS
ATTCACCACTGTAAATGGAA+GGG 0.649803 5_3:-43740527 None:intergenic
GATGTGTTGTTGTTCAACAC+AGG 0.663341 5_3:+43738319 Msa0813210:CDS
GGTGAAACAGCACCAATCAG+TGG 0.681202 5_3:+43740366 Msa0813210:CDS
GCAAACCAGGAAGACACCAA+TGG 0.684241 5_3:-43740596 None:intergenic
GTGGAGACACAATTGGTTAG+GGG 0.689457 5_3:+43737384 Msa0813210:CDS
GGACACCCTTCCATTTACAG+TGG 0.697469 5_3:+43740522 Msa0813210:CDS
AATTGCCTGAAATAACACAT+GGG 0.716075 5_3:-43738632 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATT+TGG - chr5_3:43739615-43739634 None:intergenic 0.0%
!!! TTTATTATTTTTTATACCTT+GGG - chr5_3:43736991-43737010 None:intergenic 10.0%
!!! TTTTATTATTTTTTATACCT+TGG - chr5_3:43736992-43737011 None:intergenic 10.0%
!!! AAAATTCTTGAAAATATTTT+GGG - chr5_3:43738056-43738075 None:intergenic 10.0%
!!! GAAAAAATTTGATTTTTTTT+TGG + chr5_3:43738462-43738481 Msa0813210:intron 10.0%
!! AAAAATCAATTATTCATAAT+TGG - chr5_3:43738705-43738724 None:intergenic 10.0%
!! ATTATTAATAACTTGAAAAT+AGG + chr5_3:43738745-43738764 Msa0813210:intron 10.0%
!! TTATTAATAACTTGAAAATA+GGG + chr5_3:43738746-43738765 Msa0813210:intron 10.0%
!! TTAATTTAGTGATTTAAAAA+TGG + chr5_3:43738778-43738797 Msa0813210:intron 10.0%
!!! TAACAAAAAGTTTTAAATTG+TGG + chr5_3:43737474-43737493 Msa0813210:intron 15.0%
!! TCATATGCATATTATTTAAT+TGG - chr5_3:43738028-43738047 None:intergenic 15.0%
!! AATTAAATAATATGCATATG+AGG + chr5_3:43738027-43738046 Msa0813210:intron 15.0%
!! ATTAAATAATATGCATATGA+GGG + chr5_3:43738028-43738047 Msa0813210:intron 15.0%
!!! AAATTCTTGAAAATATTTTG+GGG - chr5_3:43738055-43738074 None:intergenic 15.0%
!!! CAAAATTCTTGAAAATATTT+TGG - chr5_3:43738057-43738076 None:intergenic 15.0%
!!! TTTTTTATAGATAGACAAAA+TGG + chr5_3:43739342-43739361 Msa0813210:intron 15.0%
!! AATATGATGAATAAATTTCT+AGG + chr5_3:43739559-43739578 Msa0813210:intron 15.0%
!! TTATGATTGAAAAAGTTTAT+AGG + chr5_3:43740006-43740025 Msa0813210:intron 15.0%
!!! TAATTGCTGTTTTAATTATT+AGG - chr5_3:43740150-43740169 None:intergenic 15.0%
!! TTCATTTGACAATTAAATTC+CGG - chr5_3:43736911-43736930 None:intergenic 20.0%
!! GAATTTAATTGTCAAATGAA+TGG + chr5_3:43736911-43736930 Msa0813210:CDS 20.0%
!! TGAATCATTAGATAGATATA+AGG + chr5_3:43738000-43738019 Msa0813210:intron 20.0%
!! GAATCATTAGATAGATATAA+GGG + chr5_3:43738001-43738020 Msa0813210:intron 20.0%
!! TTAAATAATATGCATATGAG+GGG + chr5_3:43738029-43738048 Msa0813210:intron 20.0%
!!! TTTTCAAGAATTTTGATACA+TGG + chr5_3:43738062-43738081 Msa0813210:intron 20.0%
!!! CATTTTAGAGATGTTAAAAT+TGG + chr5_3:43738153-43738172 Msa0813210:intron 20.0%
!! TGTTAAAATTGGATATGATA+TGG + chr5_3:43738164-43738183 Msa0813210:intron 20.0%
!! TCTTGAATAAGCTTAAAAAA+GGG - chr5_3:43738398-43738417 None:intergenic 20.0%
!! TTCTTGAATAAGCTTAAAAA+AGG - chr5_3:43738399-43738418 None:intergenic 20.0%
!! ACTTAAGGAAAAAGTTAATT+TGG - chr5_3:43738849-43738868 None:intergenic 20.0%
!!! TGTAAATTTAGTTTGACTTA+AGG - chr5_3:43738864-43738883 None:intergenic 20.0%
!! AATTTGATTATTCTATTCTG+AGG + chr5_3:43738980-43738999 Msa0813210:intron 20.0%
!! CATAAGAAAGATAAAGAATT+AGG + chr5_3:43739120-43739139 Msa0813210:intron 20.0%
!! AAAGAATTAGGAAGAAAAAA+TGG + chr5_3:43739132-43739151 Msa0813210:intron 20.0%
!! GATAGATATACTTTATATTG+AGG + chr5_3:43739473-43739492 Msa0813210:intron 20.0%
!! AACAAGTATAGTGAATAAAT+TGG + chr5_3:43739525-43739544 Msa0813210:intron 20.0%
!! ATAAGCTAAAAACAACTTAT+GGG - chr5_3:43739963-43739982 None:intergenic 20.0%
!! ATTAAACTGTTTATTCAAAC+AGG + chr5_3:43740123-43740142 Msa0813210:intron 20.0%
!! TTAAACTGTTTATTCAAACA+GGG + chr5_3:43740124-43740143 Msa0813210:intron 20.0%
!! GACTTAATTACATCAATATT+TGG + chr5_3:43740204-43740223 Msa0813210:intron 20.0%
!! AACAAATTTATGCTAAGATT+TGG + chr5_3:43740250-43740269 Msa0813210:intron 20.0%
!! ATTAATTAATCTAGCAACAA+AGG - chr5_3:43740776-43740795 None:intergenic 20.0%
! AATGAAAAGAAGAAGCTATT+TGG - chr5_3:43736733-43736752 None:intergenic 25.0%
! TTATTGTTTGCTTTCAAACT+GGG - chr5_3:43736800-43736819 None:intergenic 25.0%
! ATTATTGTTTGCTTTCAAAC+TGG - chr5_3:43736801-43736820 None:intergenic 25.0%
! AGCTAGAAGATTGATAAAAA+GGG - chr5_3:43736874-43736893 None:intergenic 25.0%
! TCATTTGACAATTAAATTCC+GGG - chr5_3:43736910-43736929 None:intergenic 25.0%
!! TATTTAAGGTAATCAGAATC+AGG - chr5_3:43736941-43736960 None:intergenic 25.0%
!!! TTTTAAGATAATGTAGTGTG+TGG + chr5_3:43737186-43737205 Msa0813210:intron 25.0%
!!! TTGAATGATGATGTTTTTTG+TGG + chr5_3:43737224-43737243 Msa0813210:intron 25.0%
!!! TTTTTTGTGGTGTTTTGTAA+TGG + chr5_3:43737237-43737256 Msa0813210:intron 25.0%
! GATGTGATCATTGATATATT+CGG + chr5_3:43737496-43737515 Msa0813210:intron 25.0%
! AATCTTACCAACAAAAACTT+GGG - chr5_3:43737798-43737817 None:intergenic 25.0%
! AAATCTTACCAACAAAAACT+TGG - chr5_3:43737799-43737818 None:intergenic 25.0%
!!! TGTTGGTAAGATTTAGATTT+TGG + chr5_3:43737805-43737824 Msa0813210:intron 25.0%
!!! GATTTTGGTTTAAAAGAAAG+AGG + chr5_3:43737820-43737839 Msa0813210:intron 25.0%
! TGAATGAAACTTTACAAAGA+GGG - chr5_3:43737896-43737915 None:intergenic 25.0%
! ATGAATGAAACTTTACAAAG+AGG - chr5_3:43737897-43737916 None:intergenic 25.0%
! ACATCAACATCTACTAAATA+AGG - chr5_3:43738232-43738251 None:intergenic 25.0%
! TTATTTAGTAGATGTTGATG+TGG + chr5_3:43738231-43738250 Msa0813210:CDS 25.0%
!!! AAGAATTTTAAGACTTGATG+AGG + chr5_3:43738264-43738283 Msa0813210:CDS 25.0%
! ATCAAATTGCAACAAGATAT+GGG - chr5_3:43738968-43738987 None:intergenic 25.0%
! AATCAAATTGCAACAAGATA+TGG - chr5_3:43738969-43738988 None:intergenic 25.0%
!!! AAATTTTTTGGCTTGTTTGT+TGG + chr5_3:43739006-43739025 Msa0813210:intron 25.0%
!! TCTTTCTTATGTGTTTTCAT+TGG - chr5_3:43739111-43739130 None:intergenic 25.0%
! TTTAACATTATTGCATTCTC+GGG - chr5_3:43739246-43739265 None:intergenic 25.0%
! GTTTAACATTATTGCATTCT+CGG - chr5_3:43739247-43739266 None:intergenic 25.0%
! AAGAGCTTTACTATCTAATT+TGG + chr5_3:43739275-43739294 Msa0813210:intron 25.0%
!!! TATTTGGTAATGCTAGTAAA+AGG - chr5_3:43739599-43739618 None:intergenic 25.0%
! GATGTTAAGTTATGTAATAC+TGG + chr5_3:43739722-43739741 Msa0813210:intron 25.0%
!! TCTTTTCTTCATACTCAATT+GGG - chr5_3:43739761-43739780 None:intergenic 25.0%
!! TTCTTTTCTTCATACTCAAT+TGG - chr5_3:43739762-43739781 None:intergenic 25.0%
!!! AAAGAAGCTATTTTTTGCTA+AGG - chr5_3:43739825-43739844 None:intergenic 25.0%
!!! ACAAGCATTGATATGTAATA+AGG + chr5_3:43739859-43739878 Msa0813210:intron 25.0%
!!! CAAGCATTGATATGTAATAA+GGG + chr5_3:43739860-43739879 Msa0813210:intron 25.0%
!! ATAAACACACATGAGAATTT+TGG + chr5_3:43739908-43739927 Msa0813210:intron 25.0%
!! TAAACACACATGAGAATTTT+GGG + chr5_3:43739909-43739928 Msa0813210:intron 25.0%
! GATAAGCTAAAAACAACTTA+TGG - chr5_3:43739964-43739983 None:intergenic 25.0%
! CACATATATGATAAGTACTT+AGG + chr5_3:43740087-43740106 Msa0813210:intron 25.0%
!! TTTTCGCTACATATAAACAT+CGG - chr5_3:43740288-43740307 None:intergenic 25.0%
! TTATATGTAGCGAAAATGAA+TGG + chr5_3:43740292-43740311 Msa0813210:intron 25.0%
! ACAAATGAGAGTAGTTAATA+TGG + chr5_3:43740431-43740450 Msa0813210:CDS 25.0%
! AAGTTCATTAGTACTTCATT+AGG + chr5_3:43740665-43740684 Msa0813210:three_prime_UTR 25.0%
!! ACTTCATTAGGTATTTTACA+AGG + chr5_3:43740677-43740696 Msa0813210:three_prime_UTR 25.0%
! TACAGTGTAAATTTCTCAAA+AGG + chr5_3:43740812-43740831 Msa0813210:three_prime_UTR 25.0%
CAGCTAGAAGATTGATAAAA+AGG - chr5_3:43736875-43736894 None:intergenic 30.0%
CTGATTACCTTAAATATCGT+TGG + chr5_3:43736945-43736964 Msa0813210:CDS 30.0%
TTGAACATAATCACATGTGT+AGG - chr5_3:43737090-43737109 None:intergenic 30.0%
! TTTTGTAATGGTAGGTTCAA+TGG + chr5_3:43737249-43737268 Msa0813210:intron 30.0%
! GAGTTTTTGTTGAAGATGAA+AGG + chr5_3:43737276-43737295 Msa0813210:CDS 30.0%
GAGTCTAAAAAAACATTCTG+AGG + chr5_3:43737437-43737456 Msa0813210:intron 30.0%
TGATATATTCGGAAGAATTG+CGG + chr5_3:43737507-43737526 Msa0813210:intron 30.0%
! GGATACAACTATTTTATTGC+TGG - chr5_3:43737875-43737894 None:intergenic 30.0%
TCATTCATGATATCACAAAG+AGG + chr5_3:43737909-43737928 Msa0813210:intron 30.0%
! GTCTTAAAATTCTTTTCCCT+TGG - chr5_3:43738258-43738277 None:intergenic 30.0%
! TTTGTTGATTAATTGAGTGC+AGG + chr5_3:43738491-43738510 Msa0813210:intron 30.0%
! TATGAAAACATGGGCTAATT+GGG + chr5_3:43738582-43738601 Msa0813210:CDS 30.0%
AATTGCCTGAAATAACACAT+GGG - chr5_3:43738635-43738654 None:intergenic 30.0%
AAATTGCCTGAAATAACACA+TGG - chr5_3:43738636-43738655 None:intergenic 30.0%
! ACTCTTCTATGTCTCTATTT+TGG + chr5_3:43738678-43738697 Msa0813210:intron 30.0%
GTCAAGAATAGTCAAAAGAA+AGG - chr5_3:43738938-43738957 None:intergenic 30.0%
!!! ATTCTGAGGCTGAAATTTTT+TGG + chr5_3:43738994-43739013 Msa0813210:intron 30.0%
TTCATAATTCTGTGACAAGA+TGG - chr5_3:43739034-43739053 None:intergenic 30.0%
AAAATATGTCAGCCTAGTTA+GGG + chr5_3:43739083-43739102 Msa0813210:intron 30.0%
ATAGTAAAGCTCTTTCTAAG+AGG - chr5_3:43739269-43739288 None:intergenic 30.0%
CAAAGACTAATCTCTTAAGT+CGG - chr5_3:43739307-43739326 None:intergenic 30.0%
ATTATAAAGTCACACACAAG+TGG + chr5_3:43739372-43739391 Msa0813210:intron 30.0%
AAGAATTGCTTCTTTACTTG+TGG + chr5_3:43739777-43739796 Msa0813210:intron 30.0%
TGATAAGTACTTAGGCTATA+AGG + chr5_3:43740095-43740114 Msa0813210:intron 30.0%
GATAAGTACTTAGGCTATAA+GGG + chr5_3:43740096-43740115 Msa0813210:intron 30.0%
TCACAATGTTATCAGAAATG+AGG + chr5_3:43740493-43740512 Msa0813210:CDS 30.0%
TTATCAGAAATGAGGAAAGA+TGG + chr5_3:43740501-43740520 Msa0813210:CDS 30.0%
AGTAGTTGTGCATTGTTTGT+AGG + chr5_3:43736824-43736843 Msa0813210:CDS 35.0%
TGCATTGTTTGTAGGAAGTT+GGG + chr5_3:43736832-43736851 Msa0813210:CDS 35.0%
GTGGTTTCCAACGATATTTA+AGG - chr5_3:43736955-43736974 None:intergenic 35.0%
! TTGTGGTGTTTTGTAATGGT+AGG + chr5_3:43737241-43737260 Msa0813210:intron 35.0%
! GGAAAAAGTGTGATGTTTGT+TGG + chr5_3:43737297-43737316 Msa0813210:CDS 35.0%
!! ATGTTTGTTGGTGATTCGTT+AGG + chr5_3:43737309-43737328 Msa0813210:CDS 35.0%
ATTCGTTAGGAAGGAATCAA+TGG + chr5_3:43737322-43737341 Msa0813210:CDS 35.0%
TAGACTCACCAAGAATGTAA+AGG - chr5_3:43737424-43737443 None:intergenic 35.0%
! AACAGTCTGAAATGCCAAAT+GGG - chr5_3:43737739-43737758 None:intergenic 35.0%
! AAACAGTCTGAAATGCCAAA+TGG - chr5_3:43737740-43737759 None:intergenic 35.0%
TCATGATATCACAAAGAGGT+AGG + chr5_3:43737913-43737932 Msa0813210:intron 35.0%
CATGATATCACAAAGAGGTA+GGG + chr5_3:43737914-43737933 Msa0813210:intron 35.0%
!!! AGGTAGGGTCATATTTTTTG+TGG + chr5_3:43737929-43737948 Msa0813210:intron 35.0%
GCATAGTCAAAACATTCTAC+AGG - chr5_3:43738121-43738140 None:intergenic 35.0%
GGATATGATATGGTATATGC+AGG + chr5_3:43738174-43738193 Msa0813210:intron 35.0%
ATATGGTATATGCAGGACTA+TGG + chr5_3:43738181-43738200 Msa0813210:intron 35.0%
TTGATTAATTGAGTGCAGGT+GGG + chr5_3:43738495-43738514 Msa0813210:intron 35.0%
AGGTGGGATTATGTAGAATT+AGG + chr5_3:43738511-43738530 Msa0813210:intron 35.0%
TGGGATTATGTAGAATTAGG+AGG + chr5_3:43738514-43738533 Msa0813210:CDS 35.0%
GGGATTATGTAGAATTAGGA+GGG + chr5_3:43738515-43738534 Msa0813210:CDS 35.0%
! AGGGAATTTTTACCCTGATA+TGG + chr5_3:43738534-43738553 Msa0813210:CDS 35.0%
! TGGAAAGAGGTATGAAAACA+TGG + chr5_3:43738572-43738591 Msa0813210:CDS 35.0%
! GGAAAGAGGTATGAAAACAT+GGG + chr5_3:43738573-43738592 Msa0813210:CDS 35.0%
! GTATGAAAACATGGGCTAAT+TGG + chr5_3:43738581-43738600 Msa0813210:CDS 35.0%
GGTTCTACTTCTGTCAATAT+TGG - chr5_3:43738614-43738633 None:intergenic 35.0%
!! TAGAACCCATGTGTTATTTC+AGG + chr5_3:43738627-43738646 Msa0813210:CDS 35.0%
AGTCCTTACTCATAATGTGT+GGG - chr5_3:43738661-43738680 None:intergenic 35.0%
GAAAATATGTCAGCCTAGTT+AGG + chr5_3:43739082-43739101 Msa0813210:intron 35.0%
! TTTTCATTGGATCCCTAACT+AGG - chr5_3:43739098-43739117 None:intergenic 35.0%
GCACATGAATAAGATAGTTC+TGG + chr5_3:43739186-43739205 Msa0813210:intron 35.0%
! GATATCCGACCTAACAATTT+TGG + chr5_3:43739421-43739440 Msa0813210:intron 35.0%
AGATGCCAAAATTGTTAGGT+CGG - chr5_3:43739429-43739448 None:intergenic 35.0%
!! TGATATGTAATAAGGGCGTT+TGG + chr5_3:43739867-43739886 Msa0813210:intron 35.0%
AATGAATGGAATTCAGCTGT+TGG + chr5_3:43740306-43740325 Msa0813210:CDS 35.0%
ATTCACCACTGTAAATGGAA+GGG - chr5_3:43740530-43740549 None:intergenic 35.0%
AATTCACCACTGTAAATGGA+AGG - chr5_3:43740531-43740550 None:intergenic 35.0%
ACTCAATTCACCACTGTAAA+TGG - chr5_3:43740535-43740554 None:intergenic 35.0%
! AGTAGTTGATTCCAAGTATC+AGG - chr5_3:43740621-43740640 None:intergenic 35.0%
AACTTGTGATGAGCTCAAAT+TGG + chr5_3:43740884-43740903 Msa0813210:three_prime_UTR 35.0%
GTGCATTGTTTGTAGGAAGT+TGG + chr5_3:43736831-43736850 Msa0813210:CDS 40.0%
TAGCTGTGATATCATAGACC+CGG + chr5_3:43736889-43736908 Msa0813210:CDS 40.0%
!! TTGTTGGTGATTCGTTAGGA+AGG + chr5_3:43737313-43737332 Msa0813210:CDS 40.0%
ACCTAATGTGGAGACACAAT+TGG + chr5_3:43737377-43737396 Msa0813210:CDS 40.0%
ACCAATTGTGTCTCCACATT+AGG - chr5_3:43737381-43737400 None:intergenic 40.0%
ATGTGGAGACACAATTGGTT+AGG + chr5_3:43737382-43737401 Msa0813210:CDS 40.0%
TGTGGAGACACAATTGGTTA+GGG + chr5_3:43737383-43737402 Msa0813210:CDS 40.0%
AAGAATGTAAAGGTGGAGAG+AGG - chr5_3:43737414-43737433 None:intergenic 40.0%
TCTCTCCACCTTTACATTCT+TGG + chr5_3:43737413-43737432 Msa0813210:CDS 40.0%
ACTCACCAAGAATGTAAAGG+TGG - chr5_3:43737421-43737440 None:intergenic 40.0%
! ATGAAGCACCTATGCAAACA+CGG - chr5_3:43737666-43737685 None:intergenic 40.0%
TGTTTGCATAGGTGCTTCAT+AGG + chr5_3:43737666-43737685 Msa0813210:intron 40.0%
!! CCAAATGGGGTATTGGTATT+TGG - chr5_3:43737725-43737744 None:intergenic 40.0%
CCAAATACCAATACCCCATT+TGG + chr5_3:43737722-43737741 Msa0813210:intron 40.0%
TGAAATGCCAAATGGGGTAT+TGG - chr5_3:43737732-43737751 None:intergenic 40.0%
! ACAGTCTGAAATGCCAAATG+GGG - chr5_3:43737738-43737757 None:intergenic 40.0%
! AAACTTGGGTAGTGGCATTA+TGG - chr5_3:43737784-43737803 None:intergenic 40.0%
ACCAACAAAAACTTGGGTAG+TGG - chr5_3:43737792-43737811 None:intergenic 40.0%
TAGATGTTGATGTGGTCCAA+GGG + chr5_3:43738239-43738258 Msa0813210:CDS 40.0%
CTTGATGAGGCAGATAAGAA+TGG + chr5_3:43738277-43738296 Msa0813210:CDS 40.0%
CAGATAAGAATGGTGACACA+TGG + chr5_3:43738287-43738306 Msa0813210:CDS 40.0%
! GATGTGTTGTTGTTCAACAC+AGG + chr5_3:43738319-43738338 Msa0813210:CDS 40.0%
TGTTGTTCAACACAGGACAT+TGG + chr5_3:43738326-43738345 Msa0813210:CDS 40.0%
AGTCATCAAGGATCACTTCA+AGG + chr5_3:43738352-43738371 Msa0813210:CDS 40.0%
GTCATCAAGGATCACTTCAA+GGG + chr5_3:43738353-43738372 Msa0813210:CDS 40.0%
GTTGATTAATTGAGTGCAGG+TGG + chr5_3:43738494-43738513 Msa0813210:intron 40.0%
TTACCCTGATATGGATCGTT+TGG + chr5_3:43738543-43738562 Msa0813210:CDS 40.0%
CTACCAAACGATCCATATCA+GGG - chr5_3:43738549-43738568 None:intergenic 40.0%
! TATGGATCGTTTGGTAGCTT+TGG + chr5_3:43738552-43738571 Msa0813210:CDS 40.0%
TCTCCCACACATTATGAGTA+AGG + chr5_3:43738655-43738674 Msa0813210:intron 40.0%
GAGTCCTTACTCATAATGTG+TGG - chr5_3:43738662-43738681 None:intergenic 40.0%
GCTCATCAGATGAATGCAAA+TGG - chr5_3:43738894-43738913 None:intergenic 40.0%
GACTCTTTCAACAGAGTTCT+TGG + chr5_3:43739208-43739227 Msa0813210:intron 40.0%
ATAAAGTCACACACAAGTGG+AGG + chr5_3:43739375-43739394 Msa0813210:intron 40.0%
TAAAGTCACACACAAGTGGA+GGG + chr5_3:43739376-43739395 Msa0813210:intron 40.0%
GCGAAGATGCCAAAATTGTT+AGG - chr5_3:43739433-43739452 None:intergenic 40.0%
! GCTAGTTTAGCTAGGATATG+TGG + chr5_3:43739451-43739470 Msa0813210:intron 40.0%
TGTCTTAATCTGATGAGCCA+AGG + chr5_3:43739680-43739699 Msa0813210:intron 40.0%
! CTTATCTGCATGAGCTTTTC+AGG + chr5_3:43739978-43739997 Msa0813210:intron 40.0%
AATGGAATTCAGCTGTTGGT+AGG + chr5_3:43740310-43740329 Msa0813210:CDS 40.0%
ATGGAATTCAGCTGTTGGTA+GGG + chr5_3:43740311-43740330 Msa0813210:CDS 40.0%
ACGACGACAAAGAATTGCTA+CGG + chr5_3:43740345-43740364 Msa0813210:CDS 40.0%
GTGATGTCAAGAAGATATGC+AGG - chr5_3:43740477-43740496 None:intergenic 40.0%
TACAATCAGCTGAGTGATCA+GGG - chr5_3:43740575-43740594 None:intergenic 40.0%
TTAAGTGTCAGTGTCGTGTC+TGG + chr5_3:43737122-43737141 Msa0813210:intron 45.0%
GTGGAGACACAATTGGTTAG+GGG + chr5_3:43737384-43737403 Msa0813210:CDS 45.0%
TCGTATGACCGTGTTTGCAT+AGG + chr5_3:43737655-43737674 Msa0813210:intron 45.0%
! GCCACTACCCAAGTTTTTGT+TGG + chr5_3:43737788-43737807 Msa0813210:intron 45.0%
GTAGATGTTGATGTGGTCCA+AGG + chr5_3:43738238-43738257 Msa0813210:CDS 45.0%
TGTTCAACACAGGACATTGG+TGG + chr5_3:43738329-43738348 Msa0813210:CDS 45.0%
TCAAGGATCACTTCAAGGGT+AGG + chr5_3:43738357-43738376 Msa0813210:intron 45.0%
GCTACCAAACGATCCATATC+AGG - chr5_3:43738550-43738569 None:intergenic 45.0%
!! CGTTTGGTAGCTTTGGAAAG+AGG + chr5_3:43738559-43738578 Msa0813210:CDS 45.0%
! GAAAACATGGGCTAATTGGG+TGG + chr5_3:43738585-43738604 Msa0813210:CDS 45.0%
TCTGATGAGCTGCTTAGATC+TGG + chr5_3:43738904-43738923 Msa0813210:intron 45.0%
AGCTGCTTAGATCTGGAAGT+GGG + chr5_3:43738911-43738930 Msa0813210:intron 45.0%
AAGCTCTGCACATTGAAGTG+CGG - chr5_3:43739058-43739077 None:intergenic 45.0%
AAAGTCACACACAAGTGGAG+GGG + chr5_3:43739377-43739396 Msa0813210:intron 45.0%
TAGGTCGGATATCATGACCA+GGG - chr5_3:43739414-43739433 None:intergenic 45.0%
TTAGGTCGGATATCATGACC+AGG - chr5_3:43739415-43739434 None:intergenic 45.0%
! GCATCTTCGCTAGTTTAGCT+AGG + chr5_3:43739443-43739462 Msa0813210:intron 45.0%
CTTAATCTGATGAGCCAAGG+TGG + chr5_3:43739683-43739702 Msa0813210:intron 45.0%
CTTGTGGCATTAACTCACTG+AGG + chr5_3:43739793-43739812 Msa0813210:intron 45.0%
! TCTGTTGTTGTGCCACTGAT+TGG - chr5_3:43740381-43740400 None:intergenic 45.0%
AGTGGCACAACAACAGACTT+TGG + chr5_3:43740384-43740403 Msa0813210:CDS 45.0%
! ACAACAACAGACTTTGGAGG+AGG + chr5_3:43740390-43740409 Msa0813210:CDS 45.0%
CTACAATCAGCTGAGTGATC+AGG - chr5_3:43740576-43740595 None:intergenic 45.0%
ACTCAGCTGATTGTAGCCAT+TGG + chr5_3:43740580-43740599 Msa0813210:CDS 45.0%
! TTCCTGGTTTGCCTGATACT+TGG + chr5_3:43740607-43740626 Msa0813210:CDS 45.0%
TTCCAAGTATCAGGCAAACC+AGG - chr5_3:43740612-43740631 None:intergenic 45.0%
!!! AAAAAATTTGATTTTTTTTT+GGG + chr5_3:43738463-43738482 Msa0813210:intron 5.0%
CTTGGGAGCTCACAATTGAG+TGG - chr5_3:43736974-43736993 None:intergenic 50.0%
CACTCAATTGTGAGCTCCCA+AGG + chr5_3:43736972-43736991 Msa0813210:CDS 50.0%
GATGTGCCTAGTGTCTGACA+CGG + chr5_3:43737038-43737057 Msa0813210:intron 50.0%
ATGTGCCTAGTGTCTGACAC+GGG + chr5_3:43737039-43737058 Msa0813210:intron 50.0%
TCGTGTCTGGTGTTCGTGTT+TGG + chr5_3:43737135-43737154 Msa0813210:intron 50.0%
CGTGTCTGGTGTTCGTGTTT+GGG + chr5_3:43737136-43737155 Msa0813210:intron 50.0%
ATCTGCTGCAGCACCTAATG+TGG + chr5_3:43737365-43737384 Msa0813210:CDS 50.0%
TGCAGCCTTGATTGCAGTTG+CGG + chr5_3:43737544-43737563 Msa0813210:intron 50.0%
AGACACCGCAACTGCAATCA+AGG - chr5_3:43737552-43737571 None:intergenic 50.0%
GGACATTGGTGGAGTCATCA+AGG + chr5_3:43738340-43738359 Msa0813210:CDS 50.0%
GAGCTGCTTAGATCTGGAAG+TGG + chr5_3:43738910-43738929 Msa0813210:intron 50.0%
CATGTGTGATGTTGCCACCT+TGG - chr5_3:43739700-43739719 None:intergenic 50.0%
GGTGAAACAGCACCAATCAG+TGG + chr5_3:43740366-43740385 Msa0813210:CDS 50.0%
GGCACAACAACAGACTTTGG+AGG + chr5_3:43740387-43740406 Msa0813210:CDS 50.0%
GGACACCCTTCCATTTACAG+TGG + chr5_3:43740522-43740541 Msa0813210:CDS 50.0%
! TGTAGCCATTGGTGTCTTCC+TGG + chr5_3:43740591-43740610 Msa0813210:CDS 50.0%
GCAAACCAGGAAGACACCAA+TGG - chr5_3:43740599-43740618 None:intergenic 50.0%
AGACACCCGTGTCAGACACT+AGG - chr5_3:43737047-43737066 None:intergenic 55.0%
TCACACACAAGTGGAGGGGT+CGG + chr5_3:43739381-43739400 Msa0813210:intron 55.0%
ACACGGGTGTCTGACACGTG+TGG + chr5_3:43737055-43737074 Msa0813210:intron 60.0%
CACACACAAGTGGAGGGGTC+GGG + chr5_3:43739382-43739401 Msa0813210:intron 60.0%
GAGGGGTCGGGTTCAAACCC+TGG + chr5_3:43739394-43739413 Msa0813210:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 43736654 43740907 43736654 ID=Msa0813210;Name=Msa0813210
chr5_3 mRNA 43736654 43740907 43736654 ID=Msa0813210-mRNA-1;Parent=Msa0813210;Name=Msa0813210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=11|1|1|1|1|1|5|245|399
chr5_3 exon 43736654 43736993 43736654 ID=Msa0813210-mRNA-1:exon:13444;Parent=Msa0813210-mRNA-1
chr5_3 exon 43737263 43737434 43737263 ID=Msa0813210-mRNA-1:exon:13445;Parent=Msa0813210-mRNA-1
chr5_3 exon 43738196 43738374 43738196 ID=Msa0813210-mRNA-1:exon:13446;Parent=Msa0813210-mRNA-1
chr5_3 exon 43738513 43738671 43738513 ID=Msa0813210-mRNA-1:exon:13447;Parent=Msa0813210-mRNA-1
chr5_3 exon 43740302 43740907 43740302 ID=Msa0813210-mRNA-1:exon:13448;Parent=Msa0813210-mRNA-1
chr5_3 five_prime_UTR 43736654 43736664 43736654 ID=Msa0813210-mRNA-1:five_prime_utr;Parent=Msa0813210-mRNA-1
chr5_3 CDS 43736665 43736993 43736665 ID=Msa0813210-mRNA-1:cds;Parent=Msa0813210-mRNA-1
chr5_3 CDS 43737263 43737434 43737263 ID=Msa0813210-mRNA-1:cds;Parent=Msa0813210-mRNA-1
chr5_3 CDS 43738196 43738374 43738196 ID=Msa0813210-mRNA-1:cds;Parent=Msa0813210-mRNA-1
chr5_3 CDS 43738513 43738671 43738513 ID=Msa0813210-mRNA-1:cds;Parent=Msa0813210-mRNA-1
chr5_3 CDS 43740302 43740662 43740302 ID=Msa0813210-mRNA-1:cds;Parent=Msa0813210-mRNA-1
chr5_3 three_prime_UTR 43740663 43740907 43740663 ID=Msa0813210-mRNA-1:three_prime_utr;Parent=Msa0813210-mRNA-1
Gene Sequence

>Msa0813210

ATGTCTCTTTCTTGTTATGTGTTTGTTTCATTCTTCTCTCTTCTTTTTCTTCTTTCTCTTCAATGCCAAATAGCTTCTTCTTTTCATTATCATTATCATCATCATCATCATGAACAAGTTTATCATCAAAAACCCAGTTTGAAAGCAAACAATAATCAAAGTAGTTGTGCATTGTTTGTAGGAAGTTGGGTTTATGATGAAAGTTACCCTTTTTATCAATCTTCTAGCTGTGATATCATAGACCCGGAATTTAATTGTCAAATGAATGGTCGTCCTGATTCTGATTACCTTAAATATCGTTGGAAACCACTCAATTGTGAGCTCCCAAGGTTCAATGGAGTTGAGTTTTTGTTGAAGATGAAAGGAAAAAGTGTGATGTTTGTTGGTGATTCGTTAGGAAGGAATCAATGGCAGTCTTTGATTTGTATGATATCTGCTGCAGCACCTAATGTGGAGACACAATTGGTTAGGGGAGATCCTCTCTCCACCTTTACATTCTTGGACTATGGTGTGAAAATTTCATTTCATAGAGCTCCTTATTTAGTAGATGTTGATGTGGTCCAAGGGAAAAGAATTTTAAGACTTGATGAGGCAGATAAGAATGGTGACACATGGAAGAATGTTGATGTGTTGTTGTTCAACACAGGACATTGGTGGAGTCATCAAGGATCACTTCAAGGGTGGGATTATGTAGAATTAGGAGGGAATTTTTACCCTGATATGGATCGTTTGGTAGCTTTGGAAAGAGGTATGAAAACATGGGCTAATTGGGTGGATGCCAATATTGACAGAAGTAGAACCCATGTGTTATTTCAGGCAATTTCTCCCACACATTATGACGAAAATGAATGGAATTCAGCTGTTGGTAGGGCAACAAGTGTAACGACGACAAAGAATTGCTACGGTGAAACAGCACCAATCAGTGGCACAACAACAGACTTTGGAGGAGGAGAAACATACACTGATCAACAAATGAGAGTAGTTAATATGGTGATTCGAGAAATGCGCGATCCTGCATATCTTCTTGACATCACAATGTTATCAGAAATGAGGAAAGATGGACACCCTTCCATTTACAGTGGTGAATTGAGTTCTCAGCAAAGAGCTGACCCTGATCACTCAGCTGATTGTAGCCATTGGTGTCTTCCTGGTTTGCCTGATACTTGGAATCAACTACTCTATGTTGCTTTATTCTATTGA
Protein sequence

>Msa0813210

MSLSCYVFVSFFSLLFLLSLQCQIASSFHYHYHHHHHEQVYHQKPSLKANNNQSSCALFVGSWVYDESYPFYQSSSCDIIDPEFNCQMNGRPDSDYLKYRWKPLNCELPRFNGVEFLLKMKGKSVMFVGDSLGRNQWQSLICMISAAAPNVETQLVRGDPLSTFTFLDYGVKISFHRAPYLVDVDVVQGKRILRLDEADKNGDTWKNVDVLLFNTGHWWSHQGSLQGWDYVELGGNFYPDMDRLVALERGMKTWANWVDANIDRSRTHVLFQAISPTHYDENEWNSAVGRATSVTTTKNCYGETAPISGTTTDFGGGETYTDQQMRVVNMVIREMRDPAYLLDITMLSEMRKDGHPSIYSGELSSQQRADPDHSADCSHWCLPGLPDTWNQLLYVALFY*