AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125360 MtrunA17_Chr1g0187121 93.734 383 23 1 1 382 1 383 0.0 733
Msa0125360 MtrunA17_Chr1g0190551 43.023 258 133 6 61 313 45 293 6.06e-45 159
Msa0125360 MtrunA17_Chr7g0274281 58.993 139 53 1 179 317 178 312 1.40e-33 128
Msa0125360 MtrunA17_Chr7g0267791 54.198 131 54 3 185 315 213 337 4.59e-31 122
Msa0125360 MtrunA17_Chr1g0149361 53.913 115 48 2 217 331 229 338 1.00e-29 119
Msa0125360 MtrunA17_Chr3g0137761 60.870 92 36 0 217 308 212 303 7.20e-29 116
Msa0125360 MtrunA17_Chr1g0176611 60.194 103 39 2 213 315 231 331 9.02e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125360 AT3G23090.1 49.701 334 128 8 7 333 2 302 6.56e-83 256
Msa0125360 AT3G23090.4 49.701 334 128 8 7 333 38 338 1.99e-82 256
Msa0125360 AT3G23090.5 49.401 334 129 8 7 333 3 303 4.53e-82 254
Msa0125360 AT3G23090.2 49.112 338 128 9 7 333 2 306 2.62e-81 253
Msa0125360 AT3G23090.3 49.112 338 128 9 7 333 38 342 8.03e-81 253
Msa0125360 AT1G54460.1 48.551 276 106 11 63 335 40 282 3.79e-61 200
Msa0125360 AT3G04630.3 60.993 141 52 2 168 305 82 222 3.26e-50 171
Msa0125360 AT3G04630.1 60.993 141 52 2 168 305 78 218 3.73e-50 170
Msa0125360 AT3G04630.2 62.222 135 49 1 173 305 83 217 5.38e-50 170
Msa0125360 AT5G28646.2 54.194 155 62 3 162 314 40 187 4.11e-41 144
Msa0125360 AT5G28646.1 54.194 155 62 3 162 314 40 187 4.11e-41 144
Msa0125360 AT5G28646.3 58.647 133 49 2 184 314 55 183 1.70e-40 142
Msa0125360 AT2G35880.3 57.143 133 54 2 178 310 210 339 2.66e-33 129
Msa0125360 AT2G35880.2 57.143 133 54 2 178 310 210 339 2.66e-33 129
Msa0125360 AT2G35880.1 57.143 133 54 2 178 310 210 339 2.66e-33 129
Msa0125360 AT4G32330.1 54.098 122 56 0 189 310 180 301 8.46e-31 122
Msa0125360 AT4G32330.4 54.098 122 56 0 189 310 180 301 8.46e-31 122
Msa0125360 AT4G32330.3 54.098 122 56 0 189 310 180 301 8.46e-31 122
Msa0125360 AT4G32330.2 61.702 94 36 0 217 310 207 300 1.78e-30 121
Msa0125360 AT2G25480.2 58.416 101 41 1 217 317 184 283 1.71e-27 112
Msa0125360 AT2G25480.1 58.416 101 41 1 217 317 183 282 1.77e-27 112
Msa0125360 AT1G70950.1 50.617 81 40 0 218 298 330 410 3.94e-16 80.1

Find 103 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCAATAGTTTGTTATTA+AGG 0.161776 1_3:+53854461 Msa0125360:three_prime_UTR
GTCACATTGTTTGAAGTTAT+TGG 0.185251 1_3:+53854397 Msa0125360:three_prime_UTR
ATCTCAAGTTATTTGTAAAA+AGG 0.213581 1_3:+53854316 Msa0125360:three_prime_UTR
GATTCATGTTCAGTTGCTTC+TGG 0.221500 1_3:+53852867 Msa0125360:CDS
TTTCTGTCTGCCTCAACTTC+AGG 0.221974 1_3:+53854374 Msa0125360:three_prime_UTR
CTCTTTCGCCGACCCAGTTT+TGG 0.233302 1_3:-53853892 None:intergenic
TCTGAATGTTTCTTGTTATC+AGG 0.235516 1_3:-53852837 None:intergenic
ATGACTCACATTTAGAGTTT+TGG 0.250804 1_3:-53851151 None:intergenic
AGAAAGTGCTTATAAGTTAA+AGG 0.253991 1_3:-53854245 None:intergenic
ATCATAGAGAATCTTATTTC+AGG 0.276186 1_3:-53854500 None:intergenic
ACTTCTAATTTATGAGTTTC+CGG 0.286282 1_3:+53854171 Msa0125360:three_prime_UTR
GATGGAATTTCGCACAATTC+AGG 0.294711 1_3:+53852230 Msa0125360:CDS
ACGTGCAAAATCTCCAAAAC+TGG 0.305226 1_3:+53853879 Msa0125360:CDS
ATGCAATAGTTTGTTATTAA+GGG 0.313028 1_3:+53854462 Msa0125360:three_prime_UTR
ATTAATTTCTTCAATTAATT+CGG 0.315412 1_3:-53854076 None:intergenic
CTTTCAGTTGCTAGGGAAAA+TGG 0.316077 1_3:-53852533 None:intergenic
AATCTCATTGAAGACTTTAC+TGG 0.317150 1_3:-53854140 None:intergenic
ACTCCTCCTCAACTGTTTGA+TGG 0.328938 1_3:-53853391 None:intergenic
TCTGAAGGGGTCAAAGAAAA+AGG 0.336391 1_3:+53853937 Msa0125360:CDS
TTGCTTCTGCTCCAAGCTTT+CGG 0.336692 1_3:+53853062 Msa0125360:CDS
ACCTTCTTCAAGTCAACTTT+AGG 0.339340 1_3:-53853465 None:intergenic
CTTCTAATTTATGAGTTTCC+GGG 0.356248 1_3:+53854172 Msa0125360:three_prime_UTR
TTCTGTCTGCCTCAACTTCA+GGG 0.362550 1_3:+53854375 Msa0125360:three_prime_UTR
CATATTGTGATTATCAGTTC+CGG 0.379451 1_3:-53852261 None:intergenic
CGGAACTGATAATCACAATA+TGG 0.387299 1_3:+53852262 Msa0125360:CDS
AACGGTTTCCTTGGAACTAA+AGG 0.390764 1_3:-53852810 None:intergenic
AATAATGATGTTCAGTGAAC+AGG 0.391655 1_3:+53854422 Msa0125360:three_prime_UTR
ATTCATGTTCAGTTGCTTCT+GGG 0.401381 1_3:+53852868 Msa0125360:CDS
TTGTTATCTTCTTCAAAAGT+AGG 0.404232 1_3:-53852578 None:intergenic
TTGAGAACACCCTCAAAATC+TGG 0.409193 1_3:-53852434 None:intergenic
TTCAATTAATTCGGTGTGCT+CGG 0.412792 1_3:-53854067 None:intergenic
GAAGATAACAAGGGCGGTAA+TGG 0.429080 1_3:+53852590 Msa0125360:CDS
TAATACGCTTAAACAGAATC+AGG 0.429313 1_3:+53852649 Msa0125360:CDS
CTGTGAGGTCTTTCAAGTCC+AGG 0.430512 1_3:+53853032 Msa0125360:CDS
TCATAGAGAATCTTATTTCA+GGG 0.431405 1_3:-53854499 None:intergenic
TGATGAGTTTGTGAATTACT+AGG 0.440371 1_3:-53851080 None:intergenic
TGAAATAAGATTCTCTATGA+TGG 0.444022 1_3:+53854502 Msa0125360:three_prime_UTR
AAGGAAATTCTATTGCTCAT+AGG 0.446691 1_3:+53854335 Msa0125360:three_prime_UTR
TCAGGTTTCAACGGTTTCCT+TGG 0.446814 1_3:-53852819 None:intergenic
CACAATTCAGGTCATGAAAC+CGG 0.449746 1_3:+53852242 Msa0125360:CDS
TCTTTGTTATATAGTGCAAT+GGG 0.450750 1_3:+53852149 Msa0125360:intron
AGAAGTTTCTGTTAAGGCCT+CGG 0.454828 1_3:+53852373 Msa0125360:CDS
TTCTTTGTTATATAGTGCAA+TGG 0.455351 1_3:+53852148 Msa0125360:intron
ATTTATGAGTTTCCGGGGAA+TGG 0.455619 1_3:+53854178 Msa0125360:three_prime_UTR
TGTTCCTTGCAACTTTCTGA+AGG 0.459969 1_3:+53854207 Msa0125360:three_prime_UTR
CACATCACTCAAGTTACAAC+TGG 0.463926 1_3:-53853995 None:intergenic
TACAACAGAAGTTTCTGTTA+AGG 0.465193 1_3:+53852367 Msa0125360:CDS
CGTTCAGTCGACCGAAAGCT+TGG 0.469154 1_3:-53853073 None:intergenic
ATTAATATGATCAAAGTGAA+TGG 0.469665 1_3:+53854093 Msa0125360:CDS
TTCAAGTCAACTTTAGGTGG+AGG 0.483139 1_3:-53853459 None:intergenic
TTCAGATATTTGTATCATCA+AGG 0.486869 1_3:+53852181 Msa0125360:CDS
ATCGATTAAGGAAGAGAAAG+AGG 0.493171 1_3:+53853365 Msa0125360:intron
TGAAGTCTCCTTTAGTTCCA+AGG 0.494501 1_3:+53852802 Msa0125360:CDS
ATAGTTTGTTATTAAGGGAA+AGG 0.495055 1_3:+53854467 Msa0125360:three_prime_UTR
TTCTTCAAGTCAACTTTAGG+TGG 0.500721 1_3:-53853462 None:intergenic
GTTCCTTGCAACTTTCTGAA+GGG 0.511117 1_3:+53854208 Msa0125360:three_prime_UTR
AGCAGAAGCAACAGTTGCCC+TGG 0.512471 1_3:-53853050 None:intergenic
GAATAGACTACAACACGATC+TGG 0.520100 1_3:-53852206 None:intergenic
GTTCGAAACCGCACAAAACA+AGG 0.521164 1_3:+53852465 Msa0125360:CDS
TCGTGGTAAAAGCTTGGCAT+AGG 0.526747 1_3:-53853432 None:intergenic
AGCACGCCTTTCAGTTGCTA+GGG 0.527177 1_3:-53852540 None:intergenic
GAAAATGGTCGCGGAACTGT+AGG 0.532713 1_3:-53852518 None:intergenic
GGCCCCTCGTGGTAAAAGCT+TGG 0.537816 1_3:-53853438 None:intergenic
GTGCAGCTAATTCATCTGAA+GGG 0.542207 1_3:+53853923 Msa0125360:CDS
TAGCACGCCTTTCAGTTGCT+AGG 0.543009 1_3:-53852541 None:intergenic
TGTGAGGTCTTTCAAGTCCA+GGG 0.549601 1_3:+53853033 Msa0125360:CDS
ACTAACGACAATGGCTTGGA+TGG 0.551118 1_3:+53854018 Msa0125360:CDS
TTCTTGTTATCAGGTTTCAA+CGG 0.554280 1_3:-53852828 None:intergenic
CGTGGTAAAAGCTTGGCATA+GGG 0.555406 1_3:-53853431 None:intergenic
AGAGGAAAAGCAACAAGCAA+TGG 0.560439 1_3:+53853214 Msa0125360:CDS
GGTGCAGCTAATTCATCTGA+AGG 0.565625 1_3:+53853922 Msa0125360:CDS
TGAACGCGCACAAAGAAGAA+AGG 0.565933 1_3:+53853090 Msa0125360:CDS
CACAAAGGAATACGAGGTGA+AGG 0.571994 1_3:+53852340 Msa0125360:CDS
ACCTAAAGTTGACTTGAAGA+AGG 0.572341 1_3:+53853464 Msa0125360:CDS
TGTGACTAACGACAATGGCT+TGG 0.576886 1_3:+53854014 Msa0125360:CDS
ATCAAAGTGAATGGACAAGC+GGG 0.577317 1_3:+53854102 Msa0125360:CDS
CGTGCAAAATCTCCAAAACT+GGG 0.584227 1_3:+53853880 Msa0125360:CDS
AAGCCATCAAACAGTTGAGG+AGG 0.591790 1_3:+53853388 Msa0125360:CDS
TTCTAATTTATGAGTTTCCG+GGG 0.592283 1_3:+53854173 Msa0125360:three_prime_UTR
ACAATGTGACCCTGAAGTTG+AGG 0.592428 1_3:-53854384 None:intergenic
CGTGTTGTAGTCTATTCCGA+TGG 0.596110 1_3:+53852212 Msa0125360:CDS
AGGAAGCCATCAAACAGTTG+AGG 0.603449 1_3:+53853385 Msa0125360:CDS
GGAACAATACTTCCATTCCC+CGG 0.605392 1_3:-53854190 None:intergenic
TCAAAATGAAGCAAGGAGCA+AGG 0.605637 1_3:+53853250 Msa0125360:CDS
TTCGAAACCGCACAAAACAA+GGG 0.608167 1_3:+53852466 Msa0125360:CDS
TGAATTGTGCGAAATTCCAT+CGG 0.608447 1_3:-53852228 None:intergenic
AGAAGAATCAAAATGAAGCA+AGG 0.613159 1_3:+53853243 Msa0125360:CDS
CAAAATCTCCAAAACTGGGT+CGG 0.613811 1_3:+53853884 Msa0125360:CDS
TGCAGCTAATTCATCTGAAG+GGG 0.619271 1_3:+53853924 Msa0125360:CDS
GTTGCTAGGGAAAATGGTCG+CGG 0.629133 1_3:-53852527 None:intergenic
TCGAAACCGCACAAAACAAG+GGG 0.655229 1_3:+53852467 Msa0125360:CDS
GATCAAAGTGAATGGACAAG+CGG 0.657804 1_3:+53854101 Msa0125360:CDS
ACACCCTTCAGAAAGTTGCA+AGG 0.664952 1_3:-53854211 None:intergenic
TTTGAAGAAGATAACAAGGG+CGG 0.669853 1_3:+53852584 Msa0125360:CDS
CTTTAGGTGGAGGCCCCTCG+TGG 0.681265 1_3:-53853449 None:intergenic
AGAGAGCACAAAGGAATACG+AGG 0.687992 1_3:+53852334 Msa0125360:CDS
GTAGGCTTGACAGTATCTCG+TGG 0.692488 1_3:-53852500 None:intergenic
ACGCGCACAAAGAAGAAAGG+AGG 0.694653 1_3:+53853093 Msa0125360:CDS
AAAGAACTGCAACTTCTGTG+AGG 0.704237 1_3:+53853017 Msa0125360:intron
GGTCGGCGAAAGAGCAACAG+CGG 0.709755 1_3:+53853901 Msa0125360:CDS
TAGTTCAGAAGAGAGCACAA+AGG 0.711655 1_3:+53852325 Msa0125360:CDS
AGTGATGTGACTAACGACAA+TGG 0.713243 1_3:+53854009 Msa0125360:CDS
TAACAAGAAACATTCAGACG+AGG 0.732280 1_3:+53852842 Msa0125360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATTTATACTAAG+TGG - chr1_3:53851452-53851471 None:intergenic 10.0%
!! ATTAATTTCTTCAATTAATT+CGG - chr1_3:53854079-53854098 None:intergenic 10.0%
!! TTGTTCAAAAAACAATAAAA+GGG - chr1_3:53851292-53851311 None:intergenic 15.0%
!! TTTGTTCAAAAAACAATAAA+AGG - chr1_3:53851293-53851312 None:intergenic 15.0%
!!! TTTATTGTTTTTTGAACAAA+TGG + chr1_3:53851293-53851312 Msa0125360:intron 15.0%
!! ATTAAATTTATATACACGTT+TGG + chr1_3:53851838-53851857 Msa0125360:intron 15.0%
!! TTAAATTTATATACACGTTT+GGG + chr1_3:53851839-53851858 Msa0125360:intron 15.0%
!!! ATAGTTTTATTCAAAATTAG+AGG + chr1_3:53853196-53853215 Msa0125360:intron 15.0%
!!! ACTATTTATTTTTCCTATAC+TGG - chr1_3:53851336-53851355 None:intergenic 20.0%
!! ATAAATTTATACTAAGTGGT+TGG - chr1_3:53851448-53851467 None:intergenic 20.0%
!! AAAAGGAAAGTAATCAAATT+GGG - chr1_3:53851581-53851600 None:intergenic 20.0%
!!! TAGTTTTTCTTAACTTAGTT+AGG + chr1_3:53851609-53851628 Msa0125360:intron 20.0%
!!! TAGGTTTTTTAATCAATCTT+TGG + chr1_3:53851733-53851752 Msa0125360:intron 20.0%
!! TTGAAATAATCTTTCAGAAA+TGG - chr1_3:53851920-53851939 None:intergenic 20.0%
!! AGAAAAACAAAATCTTACAT+AGG - chr1_3:53852034-53852053 None:intergenic 20.0%
!! AAACTATAGCACAAATAAAA+AGG - chr1_3:53853183-53853202 None:intergenic 20.0%
!! CAAAATGACAATGTAATTTA+TGG - chr1_3:53853306-53853325 None:intergenic 20.0%
!!! TTTGACTTCATTTTATCTTT+TGG - chr1_3:53853587-53853606 None:intergenic 20.0%
!! ATTAATATGATCAAAGTGAA+TGG + chr1_3:53854093-53854112 Msa0125360:CDS 20.0%
!! ATCTCAAGTTATTTGTAAAA+AGG + chr1_3:53854316-53854335 Msa0125360:three_prime_UTR 20.0%
!!! ATGCAATAGTTTGTTATTAA+GGG + chr1_3:53854462-53854481 Msa0125360:three_prime_UTR 20.0%
!!! TTTTGGATCTGGAATAATAA+TGG - chr1_3:53851137-53851156 None:intergenic 25.0%
! TTGATGCATGAAAATGTAAA+GGG - chr1_3:53851186-53851205 None:intergenic 25.0%
! TTTGATGCATGAAAATGTAA+AGG - chr1_3:53851187-53851206 None:intergenic 25.0%
!! ATTGTTGATGTTTGTTAATC+AGG + chr1_3:53851255-53851274 Msa0125360:intron 25.0%
! GAAAAGGAAAGTAATCAAAT+TGG - chr1_3:53851582-53851601 None:intergenic 25.0%
! GAAAAACTAAAACACAGAAA+AGG - chr1_3:53851598-53851617 None:intergenic 25.0%
! AGAATATTCTCTTATCTTCT+AGG + chr1_3:53851803-53851822 Msa0125360:intron 25.0%
! GAATATTCTCTTATCTTCTA+GGG + chr1_3:53851804-53851823 Msa0125360:intron 25.0%
!!! TTTTATGAAATGGACTGTAT+AGG - chr1_3:53851951-53851970 None:intergenic 25.0%
!! ACTCAAGTGATTTTATGAAA+TGG - chr1_3:53851961-53851980 None:intergenic 25.0%
! AATTAAAGAATGCTTCCAAA+GGG - chr1_3:53851988-53852007 None:intergenic 25.0%
! AAATTAAAGAATGCTTCCAA+AGG - chr1_3:53851989-53852008 None:intergenic 25.0%
!! TTCTTTGTTATATAGTGCAA+TGG + chr1_3:53852148-53852167 Msa0125360:intron 25.0%
!! TCTTTGTTATATAGTGCAAT+GGG + chr1_3:53852149-53852168 Msa0125360:intron 25.0%
! TTCAGATATTTGTATCATCA+AGG + chr1_3:53852181-53852200 Msa0125360:CDS 25.0%
! ATCTAACCTAAAAAAAAGTC+AGG + chr1_3:53852400-53852419 Msa0125360:CDS 25.0%
! TTGTTATCTTCTTCAAAAGT+AGG - chr1_3:53852581-53852600 None:intergenic 25.0%
!!! TACTTTTGAAGAAGATAACA+AGG + chr1_3:53852580-53852599 Msa0125360:CDS 25.0%
!!! ACTTTTGAAGAAGATAACAA+GGG + chr1_3:53852581-53852600 Msa0125360:CDS 25.0%
! TTATAAACCTTATAGTCGAA+GGG + chr1_3:53852898-53852917 Msa0125360:intron 25.0%
!!! TTAAGTAGCTTTGTTTCAAT+AGG + chr1_3:53853129-53853148 Msa0125360:intron 25.0%
!!! TAAGTAGCTTTGTTTCAATA+GGG + chr1_3:53853130-53853149 Msa0125360:intron 25.0%
!!! TCTAATTTGTTCATCGATTA+AGG + chr1_3:53853353-53853372 Msa0125360:intron 25.0%
! TAATTGAGTGGTTATCATAT+AGG + chr1_3:53853536-53853555 Msa0125360:intron 25.0%
! AATGACAATGTTAACATGTA+TGG + chr1_3:53853841-53853860 Msa0125360:intron 25.0%
! ACTTCTAATTTATGAGTTTC+CGG + chr1_3:53854171-53854190 Msa0125360:three_prime_UTR 25.0%
!!! AGAAAGTGCTTATAAGTTAA+AGG - chr1_3:53854248-53854267 None:intergenic 25.0%
!!! CATGCAATAGTTTGTTATTA+AGG + chr1_3:53854461-53854480 Msa0125360:three_prime_UTR 25.0%
!!! ATAGTTTGTTATTAAGGGAA+AGG + chr1_3:53854467-53854486 Msa0125360:three_prime_UTR 25.0%
!! TCATAGAGAATCTTATTTCA+GGG - chr1_3:53854502-53854521 None:intergenic 25.0%
!! ATCATAGAGAATCTTATTTC+AGG - chr1_3:53854503-53854522 None:intergenic 25.0%
! TGAAATAAGATTCTCTATGA+TGG + chr1_3:53854502-53854521 Msa0125360:three_prime_UTR 25.0%
TGATGAGTTTGTGAATTACT+AGG - chr1_3:53851083-53851102 None:intergenic 30.0%
!! ATGACTCACATTTAGAGTTT+TGG - chr1_3:53851154-53851173 None:intergenic 30.0%
CTTAGAAGGAAAGAAAAAAG+TGG - chr1_3:53851212-53851231 None:intergenic 30.0%
TTTGTTAATCAGGTTCAGTT+TGG + chr1_3:53851265-53851284 Msa0125360:intron 30.0%
AACAATATGATTAACCGACA+AGG - chr1_3:53851502-53851521 None:intergenic 30.0%
! CTTAGTTAGGTAGACAATTT+TGG + chr1_3:53851622-53851641 Msa0125360:intron 30.0%
! GCTAACAACTTCAATACTTT+TGG + chr1_3:53851690-53851709 Msa0125360:intron 30.0%
AAAAAACCTAAGTAATGAGC+AGG - chr1_3:53851723-53851742 None:intergenic 30.0%
! AGTTGCTTTCAACTAAAAAG+TGG - chr1_3:53851769-53851788 None:intergenic 30.0%
CTTACATAGGTACAAATTCA+AGG - chr1_3:53852021-53852040 None:intergenic 30.0%
CATATTGTGATTATCAGTTC+CGG - chr1_3:53852264-53852283 None:intergenic 30.0%
TACAACAGAAGTTTCTGTTA+AGG + chr1_3:53852367-53852386 Msa0125360:CDS 30.0%
!!! ACTTCTCCTGACTTTTTTTT+AGG - chr1_3:53852409-53852428 None:intergenic 30.0%
TAATACGCTTAAACAGAATC+AGG + chr1_3:53852649-53852668 Msa0125360:CDS 30.0%
AATAGATTAGACAATGAAGG+AGG - chr1_3:53852699-53852718 None:intergenic 30.0%
AGCAATAGATTAGACAATGA+AGG - chr1_3:53852702-53852721 None:intergenic 30.0%
! TTCTTGTTATCAGGTTTCAA+CGG - chr1_3:53852831-53852850 None:intergenic 30.0%
! TCTGAATGTTTCTTGTTATC+AGG - chr1_3:53852840-53852859 None:intergenic 30.0%
CTTATAAACCTTATAGTCGA+AGG + chr1_3:53852897-53852916 Msa0125360:intron 30.0%
AGAAGAATCAAAATGAAGCA+AGG + chr1_3:53853243-53853262 Msa0125360:CDS 30.0%
AGAGATTTCTTCATTATCTC+AGG + chr1_3:53853278-53853297 Msa0125360:intron 30.0%
CAAATTAGAGTGAGAAAACT+AGG - chr1_3:53853342-53853361 None:intergenic 30.0%
! TTAAGTTGTTTATCCCAACA+GGG - chr1_3:53853519-53853538 None:intergenic 30.0%
! ATTAAGTTGTTTATCCCAAC+AGG - chr1_3:53853520-53853539 None:intergenic 30.0%
GGATAAACAACTTAATTGAG+TGG + chr1_3:53853524-53853543 Msa0125360:intron 30.0%
TCAGACATGATACTGTTATA+AGG - chr1_3:53853703-53853722 None:intergenic 30.0%
TTATAACAGTATCATGTCTG+AGG + chr1_3:53853702-53853721 Msa0125360:intron 30.0%
AATCTCATTGAAGACTTTAC+TGG - chr1_3:53854143-53854162 None:intergenic 30.0%
CTTCTAATTTATGAGTTTCC+GGG + chr1_3:53854172-53854191 Msa0125360:three_prime_UTR 30.0%
TTCTAATTTATGAGTTTCCG+GGG + chr1_3:53854173-53854192 Msa0125360:three_prime_UTR 30.0%
AAGGAAATTCTATTGCTCAT+AGG + chr1_3:53854335-53854354 Msa0125360:three_prime_UTR 30.0%
! GTCACATTGTTTGAAGTTAT+TGG + chr1_3:53854397-53854416 Msa0125360:three_prime_UTR 30.0%
AATAATGATGTTCAGTGAAC+AGG + chr1_3:53854422-53854441 Msa0125360:three_prime_UTR 30.0%
!!! CACATTTAGAGTTTTGGATC+TGG - chr1_3:53851148-53851167 None:intergenic 35.0%
AGAACATGCTAGATCTTAGA+AGG - chr1_3:53851226-53851245 None:intergenic 35.0%
TTGAACAAATGGTTCTTGCA+TGG + chr1_3:53851304-53851323 Msa0125360:intron 35.0%
TCTAGTGTATGATACCTTGT+CGG + chr1_3:53851485-53851504 Msa0125360:intron 35.0%
GGAAAGTAATCAAATTGGGT+TGG - chr1_3:53851577-53851596 None:intergenic 35.0%
ATTTGTCCTGCTCATTACTT+AGG + chr1_3:53851714-53851733 Msa0125360:intron 35.0%
AACTAAAAAGTGGAACCATG+GGG - chr1_3:53851759-53851778 None:intergenic 35.0%
CAACTAAAAAGTGGAACCAT+GGG - chr1_3:53851760-53851779 None:intergenic 35.0%
TCAACTAAAAAGTGGAACCA+TGG - chr1_3:53851761-53851780 None:intergenic 35.0%
ATCACTTGAGTAAAACCCTT+TGG + chr1_3:53851970-53851989 Msa0125360:intron 35.0%
TGAATTGTGCGAAATTCCAT+CGG - chr1_3:53852231-53852250 None:intergenic 35.0%
CGGAACTGATAATCACAATA+TGG + chr1_3:53852262-53852281 Msa0125360:CDS 35.0%
TTTGAAGAAGATAACAAGGG+CGG + chr1_3:53852584-53852603 Msa0125360:CDS 35.0%
GGAGGAAGCAAATTCAAAAT+CGG - chr1_3:53852681-53852700 None:intergenic 35.0%
ATCTATTGCTGAACTGTTTG+TGG + chr1_3:53852712-53852731 Msa0125360:intron 35.0%
TAACAAGAAACATTCAGACG+AGG + chr1_3:53852842-53852861 Msa0125360:CDS 35.0%
ATTCATGTTCAGTTGCTTCT+GGG + chr1_3:53852868-53852887 Msa0125360:CDS 35.0%
AGAAGTTGCAGTTCTTTACA+TGG - chr1_3:53853014-53853033 None:intergenic 35.0%
! GGTTTTCTTCCCAAATTGAT+CGG + chr1_3:53853151-53853170 Msa0125360:intron 35.0%
ATCGATTAAGGAAGAGAAAG+AGG + chr1_3:53853365-53853384 Msa0125360:intron 35.0%
TTCTTCAAGTCAACTTTAGG+TGG - chr1_3:53853465-53853484 None:intergenic 35.0%
!! ACCTAAAGTTGACTTGAAGA+AGG + chr1_3:53853464-53853483 Msa0125360:CDS 35.0%
ACCTTCTTCAAGTCAACTTT+AGG - chr1_3:53853468-53853487 None:intergenic 35.0%
! GACTTGAAGAAGGTATGTAA+TGG + chr1_3:53853474-53853493 Msa0125360:intron 35.0%
TACTTAAACTTATGCCCTGT+TGG + chr1_3:53853502-53853521 Msa0125360:intron 35.0%
ACTTAAACTTATGCCCTGTT+GGG + chr1_3:53853503-53853522 Msa0125360:intron 35.0%
!! TTCAATTAATTCGGTGTGCT+CGG - chr1_3:53854070-53854089 None:intergenic 35.0%
ACAAATGGTTCTTGCATGGT+TGG + chr1_3:53851308-53851327 Msa0125360:intron 40.0%
TTAATCAATCTTTGGCCCCA+TGG + chr1_3:53851741-53851760 Msa0125360:intron 40.0%
GAATAGACTACAACACGATC+TGG - chr1_3:53852209-53852228 None:intergenic 40.0%
GATGGAATTTCGCACAATTC+AGG + chr1_3:53852230-53852249 Msa0125360:CDS 40.0%
CACAATTCAGGTCATGAAAC+CGG + chr1_3:53852242-53852261 Msa0125360:CDS 40.0%
! TAGTTCAGAAGAGAGCACAA+AGG + chr1_3:53852325-53852344 Msa0125360:CDS 40.0%
AGAAGTTTCTGTTAAGGCCT+CGG + chr1_3:53852373-53852392 Msa0125360:CDS 40.0%
!!! TTTTAGGTTAGATACGTCCG+AGG - chr1_3:53852393-53852412 None:intergenic 40.0%
! AAGTTGACGCCAGATTTTGA+GGG + chr1_3:53852425-53852444 Msa0125360:CDS 40.0%
TTGAGAACACCCTCAAAATC+TGG - chr1_3:53852437-53852456 None:intergenic 40.0%
TTCGAAACCGCACAAAACAA+GGG + chr1_3:53852466-53852485 Msa0125360:CDS 40.0%
!!! TGATTACCCCTTGTTTTGTG+CGG - chr1_3:53852476-53852495 None:intergenic 40.0%
CTTTCAGTTGCTAGGGAAAA+TGG - chr1_3:53852536-53852555 None:intergenic 40.0%
! CATTTTCCCTAGCAACTGAA+AGG + chr1_3:53852534-53852553 Msa0125360:CDS 40.0%
TAAAGGAGACTTCAACTGCA+AGG - chr1_3:53852796-53852815 None:intergenic 40.0%
! TGAAGTCTCCTTTAGTTCCA+AGG + chr1_3:53852802-53852821 Msa0125360:CDS 40.0%
AACGGTTTCCTTGGAACTAA+AGG - chr1_3:53852813-53852832 None:intergenic 40.0%
GATTCATGTTCAGTTGCTTC+TGG + chr1_3:53852867-53852886 Msa0125360:CDS 40.0%
TTTGACACCCTTCGACTATA+AGG - chr1_3:53852908-53852927 None:intergenic 40.0%
CAGTTCTTTACATGGTCAAG+GGG - chr1_3:53853006-53853025 None:intergenic 40.0%
GCAGTTCTTTACATGGTCAA+GGG - chr1_3:53853007-53853026 None:intergenic 40.0%
TGCAGTTCTTTACATGGTCA+AGG - chr1_3:53853008-53853027 None:intergenic 40.0%
AAAGAACTGCAACTTCTGTG+AGG + chr1_3:53853017-53853036 Msa0125360:intron 40.0%
! AGGAATGCACCGATCAATTT+GGG - chr1_3:53853163-53853182 None:intergenic 40.0%
! AAGGAATGCACCGATCAATT+TGG - chr1_3:53853164-53853183 None:intergenic 40.0%
AGAGGAAAAGCAACAAGCAA+TGG + chr1_3:53853214-53853233 Msa0125360:CDS 40.0%
TCAAAATGAAGCAAGGAGCA+AGG + chr1_3:53853250-53853269 Msa0125360:CDS 40.0%
TTCAAGTCAACTTTAGGTGG+AGG - chr1_3:53853462-53853481 None:intergenic 40.0%
! AACAGTCTCACAAGTGCTTT+TGG + chr1_3:53853641-53853660 Msa0125360:intron 40.0%
! TTTGGAGATTTTGCACGTGT+GGG - chr1_3:53853877-53853896 None:intergenic 40.0%
!! TTTTGGAGATTTTGCACGTG+TGG - chr1_3:53853878-53853897 None:intergenic 40.0%
ACGTGCAAAATCTCCAAAAC+TGG + chr1_3:53853879-53853898 Msa0125360:CDS 40.0%
CGTGCAAAATCTCCAAAACT+GGG + chr1_3:53853880-53853899 Msa0125360:CDS 40.0%
CAAAATCTCCAAAACTGGGT+CGG + chr1_3:53853884-53853903 Msa0125360:CDS 40.0%
GTGCAGCTAATTCATCTGAA+GGG + chr1_3:53853923-53853942 Msa0125360:CDS 40.0%
TGCAGCTAATTCATCTGAAG+GGG + chr1_3:53853924-53853943 Msa0125360:CDS 40.0%
TCTGAAGGGGTCAAAGAAAA+AGG + chr1_3:53853937-53853956 Msa0125360:CDS 40.0%
CACATCACTCAAGTTACAAC+TGG - chr1_3:53853998-53854017 None:intergenic 40.0%
AGTGATGTGACTAACGACAA+TGG + chr1_3:53854009-53854028 Msa0125360:CDS 40.0%
GATCAAAGTGAATGGACAAG+CGG + chr1_3:53854101-53854120 Msa0125360:CDS 40.0%
ATCAAAGTGAATGGACAAGC+GGG + chr1_3:53854102-53854121 Msa0125360:CDS 40.0%
ATTTATGAGTTTCCGGGGAA+TGG + chr1_3:53854178-53854197 Msa0125360:three_prime_UTR 40.0%
TGTTCCTTGCAACTTTCTGA+AGG + chr1_3:53854207-53854226 Msa0125360:three_prime_UTR 40.0%
GTTCCTTGCAACTTTCTGAA+GGG + chr1_3:53854208-53854227 Msa0125360:three_prime_UTR 40.0%
TGCATGGTTGGATCCAGTAT+AGG + chr1_3:53851320-53851339 Msa0125360:intron 45.0%
TATACACGTTTGGGCATGCT+TGG + chr1_3:53851848-53851867 Msa0125360:intron 45.0%
CGTGTTGTAGTCTATTCCGA+TGG + chr1_3:53852212-53852231 Msa0125360:CDS 45.0%
! AGAGAGCACAAAGGAATACG+AGG + chr1_3:53852334-53852353 Msa0125360:CDS 45.0%
CACAAAGGAATACGAGGTGA+AGG + chr1_3:53852340-53852359 Msa0125360:CDS 45.0%
! GAAGTTGACGCCAGATTTTG+AGG + chr1_3:53852424-53852443 Msa0125360:CDS 45.0%
GTTCGAAACCGCACAAAACA+AGG + chr1_3:53852465-53852484 Msa0125360:CDS 45.0%
TCGAAACCGCACAAAACAAG+GGG + chr1_3:53852467-53852486 Msa0125360:CDS 45.0%
GAAGATAACAAGGGCGGTAA+TGG + chr1_3:53852590-53852609 Msa0125360:CDS 45.0%
TCAGGTTTCAACGGTTTCCT+TGG - chr1_3:53852822-53852841 None:intergenic 45.0%
! TGTGAGGTCTTTCAAGTCCA+GGG + chr1_3:53853033-53853052 Msa0125360:CDS 45.0%
TTGCTTCTGCTCCAAGCTTT+CGG + chr1_3:53853062-53853081 Msa0125360:CDS 45.0%
TGAACGCGCACAAAGAAGAA+AGG + chr1_3:53853090-53853109 Msa0125360:CDS 45.0%
AGGAAGCCATCAAACAGTTG+AGG + chr1_3:53853385-53853404 Msa0125360:CDS 45.0%
AAGCCATCAAACAGTTGAGG+AGG + chr1_3:53853388-53853407 Msa0125360:CDS 45.0%
ACTCCTCCTCAACTGTTTGA+TGG - chr1_3:53853394-53853413 None:intergenic 45.0%
CGTGGTAAAAGCTTGGCATA+GGG - chr1_3:53853434-53853453 None:intergenic 45.0%
TCGTGGTAAAAGCTTGGCAT+AGG - chr1_3:53853435-53853454 None:intergenic 45.0%
! TATGCCAAGCTTTTACCACG+AGG + chr1_3:53853434-53853453 Msa0125360:CDS 45.0%
! ATGCCAAGCTTTTACCACGA+GGG + chr1_3:53853435-53853454 Msa0125360:CDS 45.0%
GGTGCAGCTAATTCATCTGA+AGG + chr1_3:53853922-53853941 Msa0125360:CDS 45.0%
AGGGGTCAAAGAAAAAGGAG+CGG + chr1_3:53853942-53853961 Msa0125360:CDS 45.0%
TGTGACTAACGACAATGGCT+TGG + chr1_3:53854014-53854033 Msa0125360:CDS 45.0%
! ACTAACGACAATGGCTTGGA+TGG + chr1_3:53854018-53854037 Msa0125360:CDS 45.0%
GGAACAATACTTCCATTCCC+CGG - chr1_3:53854193-53854212 None:intergenic 45.0%
ACACCCTTCAGAAAGTTGCA+AGG - chr1_3:53854214-53854233 None:intergenic 45.0%
TTTCTGTCTGCCTCAACTTC+AGG + chr1_3:53854374-53854393 Msa0125360:three_prime_UTR 45.0%
TTCTGTCTGCCTCAACTTCA+GGG + chr1_3:53854375-53854394 Msa0125360:three_prime_UTR 45.0%
ACAATGTGACCCTGAAGTTG+AGG - chr1_3:53854387-53854406 None:intergenic 45.0%
GTAGGCTTGACAGTATCTCG+TGG - chr1_3:53852503-53852522 None:intergenic 50.0%
GAAAATGGTCGCGGAACTGT+AGG - chr1_3:53852521-53852540 None:intergenic 50.0%
GTTGCTAGGGAAAATGGTCG+CGG - chr1_3:53852530-53852549 None:intergenic 50.0%
AGCACGCCTTTCAGTTGCTA+GGG - chr1_3:53852543-53852562 None:intergenic 50.0%
TAGCACGCCTTTCAGTTGCT+AGG - chr1_3:53852544-53852563 None:intergenic 50.0%
! CTGTGAGGTCTTTCAAGTCC+AGG + chr1_3:53853032-53853051 Msa0125360:CDS 50.0%
ACGCGCACAAAGAAGAAAGG+AGG + chr1_3:53853093-53853112 Msa0125360:CDS 50.0%
! TGCCAAGCTTTTACCACGAG+GGG + chr1_3:53853436-53853455 Msa0125360:CDS 50.0%
AGCAGAAGCAACAGTTGCCC+TGG - chr1_3:53853053-53853072 None:intergenic 55.0%
CGTTCAGTCGACCGAAAGCT+TGG - chr1_3:53853076-53853095 None:intergenic 55.0%
! GGAGATTTTGCACGTGTGGG+TGG - chr1_3:53853874-53853893 None:intergenic 55.0%
! CTCTTTCGCCGACCCAGTTT+TGG - chr1_3:53853895-53853914 None:intergenic 55.0%
GGCCCCTCGTGGTAAAAGCT+TGG - chr1_3:53853441-53853460 None:intergenic 60.0%
TTGCACGTGTGGGTGGTAGC+TGG - chr1_3:53853867-53853886 None:intergenic 60.0%
GGTCGGCGAAAGAGCAACAG+CGG + chr1_3:53853901-53853920 Msa0125360:CDS 60.0%
CTTTAGGTGGAGGCCCCTCG+TGG - chr1_3:53853452-53853471 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 53851027 53854526 53851027 ID=Msa0125360;Name=Msa0125360
chr1_3 mRNA 53851027 53854526 53851027 ID=Msa0125360-mRNA-1;Parent=Msa0125360;Name=Msa0125360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=142|1|1|1|0.83|0.71|7|380|382
chr1_3 exon 53851027 53851164 53851027 ID=Msa0125360-mRNA-1:exon:16484;Parent=Msa0125360-mRNA-1
chr1_3 exon 53852163 53852670 53852163 ID=Msa0125360-mRNA-1:exon:16485;Parent=Msa0125360-mRNA-1
chr1_3 exon 53852801 53852889 53852801 ID=Msa0125360-mRNA-1:exon:16486;Parent=Msa0125360-mRNA-1
chr1_3 exon 53853021 53853114 53853021 ID=Msa0125360-mRNA-1:exon:16487;Parent=Msa0125360-mRNA-1
chr1_3 exon 53853200 53853271 53853200 ID=Msa0125360-mRNA-1:exon:16488;Parent=Msa0125360-mRNA-1
chr1_3 exon 53853375 53853485 53853375 ID=Msa0125360-mRNA-1:exon:16489;Parent=Msa0125360-mRNA-1
chr1_3 exon 53853868 53854526 53853868 ID=Msa0125360-mRNA-1:exon:16490;Parent=Msa0125360-mRNA-1
chr1_3 five_prime_UTR 53851027 53851164 53851027 ID=Msa0125360-mRNA-1:five_prime_utr;Parent=Msa0125360-mRNA-1
chr1_3 five_prime_UTR 53852163 53852166 53852163 ID=Msa0125360-mRNA-1:five_prime_utr;Parent=Msa0125360-mRNA-1
chr1_3 CDS 53852167 53852670 53852167 ID=Msa0125360-mRNA-1:cds;Parent=Msa0125360-mRNA-1
chr1_3 CDS 53852801 53852889 53852801 ID=Msa0125360-mRNA-1:cds;Parent=Msa0125360-mRNA-1
chr1_3 CDS 53853021 53853114 53853021 ID=Msa0125360-mRNA-1:cds;Parent=Msa0125360-mRNA-1
chr1_3 CDS 53853200 53853271 53853200 ID=Msa0125360-mRNA-1:cds;Parent=Msa0125360-mRNA-1
chr1_3 CDS 53853375 53853485 53853375 ID=Msa0125360-mRNA-1:cds;Parent=Msa0125360-mRNA-1
chr1_3 CDS 53853868 53854146 53853868 ID=Msa0125360-mRNA-1:cds;Parent=Msa0125360-mRNA-1
chr1_3 three_prime_UTR 53854147 53854526 53854147 ID=Msa0125360-mRNA-1:three_prime_utr;Parent=Msa0125360-mRNA-1
Gene Sequence

>Msa0125360

ATGGGAATAGAAGATTCAGATATTTGTATCATCAAGGAGCCAGATCGTGTTGTAGTCTATTCCGATGGAATTTCGCACAATTCAGGTCATGAAACCGGAACTGATAATCACAATATGGCAGAGTCTTATGAGCATATCAACGAGACTACTGAACATCATAGTTCAGAAGAGAGCACAAAGGAATACGAGGTGAAGGAATGTACAACAGAAGTTTCTGTTAAGGCCTCGGACGTATCTAACCTAAAAAAAAGTCAGGAGAAGTTGACGCCAGATTTTGAGGGTGTTCTCAATGTGAAAAGTTCGAAACCGCACAAAACAAGGGGTAATCAAAAGCCACGAGATACTGTCAAGCCTACAGTTCCGCGACCATTTTCCCTAGCAACTGAAAGGCGTGCTACAATTGTAACTCGTCCTACTTTTGAAGAAGATAACAAGGGCGGTAATGGAAGAAAATCTGTAAATAAAAAGAATGTGCTGTCTTCTAATACGCTTAAACAGAATCAGTTGAAGTCTCCTTTAGTTCCAAGGAAACCGTTGAAACCTGATAACAAGAAACATTCAGACGAGGACGATTCATGTTCAGTTGCTTCTGGAACTGCAACTTCTGTGAGGTCTTTCAAGTCCAGGGCAACTGTTGCTTCTGCTCCAAGCTTTCGGTCGACTGAACGCGCACAAAGAAGAAAGGAGTTTTATTCAAAATTAGAGGAAAAGCAACAAGCAATGGAAGCTGAGAAGAATCAAAATGAAGCAAGGAGCAAGGAAGAGAAAGAGGAAGCCATCAAACAGTTGAGGAGGAGTTTAAAGTTTAAAGCAAGCCCTATGCCAAGCTTTTACCACGAGGGGCCTCCACCTAAAGTTGACTTGAAGAAGCTACCACCCACACGTGCAAAATCTCCAAAACTGGGTCGGCGAAAGAGCAACAGCGGTGCAGCTAATTCATCTGAAGGGGTCAAAGAAAAAGGAGCGGCTGCTCAGAGAAAGCATCGCACATCGAACACCAGTTGTAACTTGAGTGATGTGACTAACGACAATGGCTTGGATGGTCTCAAAAATAAGACTGAAAACAAGACCGAGCACACCGAATTAATTGAAGAAATTAATATGATCAAAGTGAATGGACAAGCGGGCATAGAGATCAGCAGCCAGTAA

Protein sequence

>Msa0125360

MGIEDSDICIIKEPDRVVVYSDGISHNSGHETGTDNHNMAESYEHINETTEHHSSEESTKEYEVKECTTEVSVKASDVSNLKKSQEKLTPDFEGVLNVKSSKPHKTRGNQKPRDTVKPTVPRPFSLATERRATIVTRPTFEEDNKGGNGRKSVNKKNVLSSNTLKQNQLKSPLVPRKPLKPDNKKHSDEDDSCSVASGTATSVRSFKSRATVASAPSFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPPKVDLKKLPPTRAKSPKLGRRKSNSGAANSSEGVKEKGAAAQRKHRTSNTSCNLSDVTNDNGLDGLKNKTENKTEHTELIEEINMIKVNGQAGIEISSQ*