Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815560 | XP_003616173.1 | 97.568 | 370 | 9 | 0 | 1 | 370 | 1 | 370 | 0.0 | 742 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815560 | sp|Q9M9N9|AXY9_ARATH | 57.447 | 376 | 146 | 6 | 1 | 370 | 1 | 368 | 1.86e-139 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815560 | G7KFU4 | 97.568 | 370 | 9 | 0 | 1 | 370 | 1 | 370 | 0.0 | 742 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108870 | Msa0815560 | 0.805393 | 1.364373e-49 | -8.615850e-47 |
| Msa0756930 | Msa0815560 | 0.813388 | 2.625326e-51 | -8.615850e-47 |
| Msa0815560 | Msa1201830 | 0.811700 | 6.139145e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815560 | MtrunA17_Chr5g0433821 | 97.568 | 370 | 9 | 0 | 1 | 370 | 1 | 370 | 0.0 | 742 |
| Msa0815560 | MtrunA17_Chr5g0433831 | 81.481 | 108 | 18 | 1 | 265 | 370 | 1 | 108 | 1.37e-55 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815560 | AT3G03210.1 | 57.447 | 376 | 146 | 6 | 1 | 370 | 1 | 368 | 1.89e-140 | 404 |
Find 66 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACAAATGCTTCTGATTA+TGG | 0.165491 | 5_3:+49196426 | Msa0815560:CDS |
| CTTTGCTTCATGAGATTGTT+TGG | 0.216592 | 5_3:+49195977 | Msa0815560:CDS |
| TTCTTTGTTGAGTTTAGTTT+TGG | 0.229067 | 5_3:+49196197 | Msa0815560:CDS |
| TGATGAGATGGGTTTGAAAT+TGG | 0.236912 | 5_3:+49196287 | Msa0815560:CDS |
| TCCTAACAATTTGACAGATT+TGG | 0.259155 | 5_3:+49196329 | Msa0815560:CDS |
| GGTTCATCATTCTCAAATTT+CGG | 0.287793 | 5_3:-49196501 | None:intergenic |
| TGGATTTGCTTAATGGGTCT+TGG | 0.290048 | 5_3:+49196133 | Msa0815560:CDS |
| TTAGATCGCCGCATTTGTTT+TGG | 0.290342 | 5_3:+49196547 | Msa0815560:CDS |
| CATTGAATTATGATAAGTTT+TGG | 0.296461 | 5_3:+49196046 | Msa0815560:CDS |
| ACATTTGTATCCGGATGTTT+TGG | 0.314178 | 5_3:+49196371 | Msa0815560:CDS |
| TTAGAAACAGAAGGAAAATA+AGG | 0.316986 | 5_3:-49195886 | None:intergenic |
| TCTGATTATGGTGACTTGTT+GGG | 0.319697 | 5_3:+49196438 | Msa0815560:CDS |
| TTCTCAAATTTCGGCGAAAC+AGG | 0.321721 | 5_3:-49196492 | None:intergenic |
| GCTTAAGAGGAAGGATGTTA+TGG | 0.329703 | 5_3:+49196113 | Msa0815560:CDS |
| GATGTTATGGATTTGCTTAA+TGG | 0.332464 | 5_3:+49196126 | Msa0815560:CDS |
| CCATTTCAACTACTCGATAT+AGG | 0.351255 | 5_3:+49196699 | Msa0815560:CDS |
| GGATTTGCTTAATGGGTCTT+GGG | 0.351297 | 5_3:+49196134 | Msa0815560:CDS |
| ATGTTATGGATTTGCTTAAT+GGG | 0.354857 | 5_3:+49196127 | Msa0815560:CDS |
| TTTGCTTCATGAGATTGTTT+GGG | 0.355412 | 5_3:+49195978 | Msa0815560:CDS |
| TTCTGATTATGGTGACTTGT+TGG | 0.369091 | 5_3:+49196437 | Msa0815560:CDS |
| GTGAGTTTCAGAGGCTTAAG+AGG | 0.380831 | 5_3:+49196100 | Msa0815560:CDS |
| AATGTTTGGTGCTGTTCAAT+TGG | 0.384156 | 5_3:+49195735 | None:intergenic |
| ACCAAATCTGTCAAATTGTT+AGG | 0.393608 | 5_3:-49196330 | None:intergenic |
| TGTTGTATTGTTTGTTCCAA+TGG | 0.395106 | 5_3:+49195774 | Msa0815560:CDS |
| TGGTGATGGGTTCTGGTTTG+TGG | 0.402650 | 5_3:+49196391 | Msa0815560:CDS |
| GGGTCTTGGGTTATGATTGT+AGG | 0.403798 | 5_3:+49196147 | Msa0815560:CDS |
| TAAGAAGAAACATTTGTATC+CGG | 0.417131 | 5_3:+49196362 | Msa0815560:CDS |
| GGATTCGGAGCGGGTTGAAT+CGG | 0.419839 | 5_3:+49196218 | Msa0815560:CDS |
| CCTATATCGAGTAGTTGAAA+TGG | 0.422886 | 5_3:-49196699 | None:intergenic |
| CATATTGATATTGATGAGAT+GGG | 0.430367 | 5_3:+49196276 | Msa0815560:CDS |
| TCTGTCAAATTGTTAGGATA+AGG | 0.433218 | 5_3:-49196324 | None:intergenic |
| AAATGATGATGTTGTGTTTG+TGG | 0.434990 | 5_3:+49195933 | Msa0815560:CDS |
| TCATATTGATATTGATGAGA+TGG | 0.436718 | 5_3:+49196275 | Msa0815560:CDS |
| AACATAGAGTTTATCAAAGT+CGG | 0.442553 | 5_3:-49196579 | None:intergenic |
| GTTGTATTGTTTGTTCCAAT+GGG | 0.452111 | 5_3:+49195775 | Msa0815560:CDS |
| TTGGGAGGTTATGCCAAGTA+AGG | 0.454727 | 5_3:+49195996 | Msa0815560:CDS |
| CTGATTATGGTGACTTGTTG+GGG | 0.455040 | 5_3:+49196439 | Msa0815560:CDS |
| ATGAATTATTCCTCAACAAA+GGG | 0.456964 | 5_3:-49196026 | None:intergenic |
| TGCGATGGGTTCTGTTTCAT+CGG | 0.467835 | 5_3:+49196524 | Msa0815560:CDS |
| TTTGTTCCAATGGGTATGGC+TGG | 0.472651 | 5_3:+49195784 | Msa0815560:CDS |
| ATTGTTTGTTCCAATGGGTA+TGG | 0.477514 | 5_3:+49195780 | Msa0815560:CDS |
| GGTCTTGGGTTATGATTGTA+GGG | 0.490359 | 5_3:+49196148 | Msa0815560:CDS |
| ATGTTTGGTGCTGTTCAATT+GGG | 0.492915 | 5_3:+49195736 | Msa0815560:CDS |
| AGTGAAGATGAATGATGTAA+TGG | 0.493702 | 5_3:+49196620 | Msa0815560:CDS |
| TTCCAATGGGTATGGCTGGT+TGG | 0.506316 | 5_3:+49195788 | Msa0815560:CDS |
| AATGAATTATTCCTCAACAA+AGG | 0.511323 | 5_3:-49196027 | None:intergenic |
| GCTTCATGAGATTGTTTGGG+AGG | 0.519554 | 5_3:+49195981 | Msa0815560:CDS |
| TTAGTGAATGTGAGTTTCAG+AGG | 0.523592 | 5_3:+49196091 | Msa0815560:CDS |
| TGAAGAATAAAACTTTGTTA+CGG | 0.526592 | 5_3:-49195819 | None:intergenic |
| CGGAGCGGGTTGAATCGGTT+AGG | 0.533530 | 5_3:+49196223 | Msa0815560:CDS |
| GAACCCATCACCAAAACATC+CGG | 0.544298 | 5_3:-49196381 | None:intergenic |
| GTTTCAGAGGCTTAAGAGGA+AGG | 0.545889 | 5_3:+49196104 | Msa0815560:CDS |
| GGATTATTGAGTTTGAATTG+TGG | 0.565016 | 5_3:+49196720 | Msa0815560:CDS |
| TGCCAACCAGCCATACCCAT+TGG | 0.570463 | 5_3:-49195790 | None:intergenic |
| TGAGAATGATGAACCTGCGA+TGG | 0.581367 | 5_3:+49196509 | Msa0815560:CDS |
| TTGTAGGGGATTCACAAGCT+AGG | 0.585033 | 5_3:+49196163 | Msa0815560:CDS |
| GGAATCAAATGTACAGATGA+TGG | 0.585892 | 5_3:+49196741 | Msa0815560:CDS |
| CTCATAAAATTAGAAACAGA+AGG | 0.586693 | 5_3:-49195895 | None:intergenic |
| GATGATGGTATGCATTATGA+TGG | 0.601643 | 5_3:+49196756 | Msa0815560:CDS |
| GTCTTGGGTTATGATTGTAG+GGG | 0.606642 | 5_3:+49196149 | Msa0815560:CDS |
| GAGAATGATGAACCTGCGAT+GGG | 0.610564 | 5_3:+49196510 | Msa0815560:CDS |
| AAACTCTATGTTGAATACGC+AGG | 0.625290 | 5_3:+49196590 | Msa0815560:CDS |
| GTTGTGTTTGTGGAAGATCG+TGG | 0.630808 | 5_3:+49195943 | Msa0815560:CDS |
| GATGAAACAGAACCCATCGC+AGG | 0.633804 | 5_3:-49196522 | None:intergenic |
| AAGATGAATGATGTAATGGA+AGG | 0.671697 | 5_3:+49196624 | Msa0815560:CDS |
| ATACCTAGCCAAAACAAATG+CGG | 0.712684 | 5_3:-49196555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAATTGGATTTTATTT+GGG | + | chr5_3:49196299-49196318 | Msa0815560:CDS | 15.0% |
| !!! | TTTGAAATTGGATTTTATTT+GGG | + | chr5_3:49196299-49196318 | Msa0815560:CDS | 15.0% |
| !! | TGAAGAATAAAACTTTGTTA+CGG | - | chr5_3:49195822-49195841 | None:intergenic | 20.0% |
| !!! | CATTGAATTATGATAAGTTT+TGG | + | chr5_3:49196046-49196065 | Msa0815560:CDS | 20.0% |
| !!! | GTTTGAAATTGGATTTTATT+TGG | + | chr5_3:49196298-49196317 | Msa0815560:CDS | 20.0% |
| !! | TGAAGAATAAAACTTTGTTA+CGG | - | chr5_3:49195822-49195841 | None:intergenic | 20.0% |
| !!! | CATTGAATTATGATAAGTTT+TGG | + | chr5_3:49196046-49196065 | Msa0815560:CDS | 20.0% |
| !!! | GTTTGAAATTGGATTTTATT+TGG | + | chr5_3:49196298-49196317 | Msa0815560:CDS | 20.0% |
| !!! | AACAAAGTTTTATTCTTCAG+TGG | + | chr5_3:49195823-49195842 | Msa0815560:CDS | 25.0% |
| ! | TTAGAAACAGAAGGAAAATA+AGG | - | chr5_3:49195889-49195908 | None:intergenic | 25.0% |
| ! | CTCATAAAATTAGAAACAGA+AGG | - | chr5_3:49195898-49195917 | None:intergenic | 25.0% |
| ! | ATGAATTATTCCTCAACAAA+GGG | - | chr5_3:49196029-49196048 | None:intergenic | 25.0% |
| ! | AATGAATTATTCCTCAACAA+AGG | - | chr5_3:49196030-49196049 | None:intergenic | 25.0% |
| !!! | ATTATGATAAGTTTTGGTCT+TGG | + | chr5_3:49196052-49196071 | Msa0815560:CDS | 25.0% |
| !! | ATGTTATGGATTTGCTTAAT+GGG | + | chr5_3:49196127-49196146 | Msa0815560:CDS | 25.0% |
| !!! | TTCTTTGTTGAGTTTAGTTT+TGG | + | chr5_3:49196197-49196216 | Msa0815560:CDS | 25.0% |
| !!! | TTAGGAGTTTTTTGTTTAAG+AGG | + | chr5_3:49196241-49196260 | Msa0815560:CDS | 25.0% |
| ! | TCATATTGATATTGATGAGA+TGG | + | chr5_3:49196275-49196294 | Msa0815560:CDS | 25.0% |
| ! | CATATTGATATTGATGAGAT+GGG | + | chr5_3:49196276-49196295 | Msa0815560:CDS | 25.0% |
| ! | TAAGAAGAAACATTTGTATC+CGG | + | chr5_3:49196362-49196381 | Msa0815560:CDS | 25.0% |
| ! | ATTACAAATGCTTCTGATTA+TGG | + | chr5_3:49196426-49196445 | Msa0815560:CDS | 25.0% |
| ! | AACATAGAGTTTATCAAAGT+CGG | - | chr5_3:49196582-49196601 | None:intergenic | 25.0% |
| !!! | AACAAAGTTTTATTCTTCAG+TGG | + | chr5_3:49195823-49195842 | Msa0815560:CDS | 25.0% |
| ! | TTAGAAACAGAAGGAAAATA+AGG | - | chr5_3:49195889-49195908 | None:intergenic | 25.0% |
| ! | CTCATAAAATTAGAAACAGA+AGG | - | chr5_3:49195898-49195917 | None:intergenic | 25.0% |
| ! | ATGAATTATTCCTCAACAAA+GGG | - | chr5_3:49196029-49196048 | None:intergenic | 25.0% |
| ! | AATGAATTATTCCTCAACAA+AGG | - | chr5_3:49196030-49196049 | None:intergenic | 25.0% |
| !!! | ATTATGATAAGTTTTGGTCT+TGG | + | chr5_3:49196052-49196071 | Msa0815560:CDS | 25.0% |
| !! | ATGTTATGGATTTGCTTAAT+GGG | + | chr5_3:49196127-49196146 | Msa0815560:CDS | 25.0% |
| !!! | TTCTTTGTTGAGTTTAGTTT+TGG | + | chr5_3:49196197-49196216 | Msa0815560:CDS | 25.0% |
| !!! | TTAGGAGTTTTTTGTTTAAG+AGG | + | chr5_3:49196241-49196260 | Msa0815560:CDS | 25.0% |
| ! | TCATATTGATATTGATGAGA+TGG | + | chr5_3:49196275-49196294 | Msa0815560:CDS | 25.0% |
| ! | CATATTGATATTGATGAGAT+GGG | + | chr5_3:49196276-49196295 | Msa0815560:CDS | 25.0% |
| ! | TAAGAAGAAACATTTGTATC+CGG | + | chr5_3:49196362-49196381 | Msa0815560:CDS | 25.0% |
| ! | ATTACAAATGCTTCTGATTA+TGG | + | chr5_3:49196426-49196445 | Msa0815560:CDS | 25.0% |
| ! | AACATAGAGTTTATCAAAGT+CGG | - | chr5_3:49196582-49196601 | None:intergenic | 25.0% |
| TGTTGTATTGTTTGTTCCAA+TGG | + | chr5_3:49195774-49195793 | Msa0815560:CDS | 30.0% | |
| GTTGTATTGTTTGTTCCAAT+GGG | + | chr5_3:49195775-49195794 | Msa0815560:CDS | 30.0% | |
| ! | AAATGATGATGTTGTGTTTG+TGG | + | chr5_3:49195933-49195952 | Msa0815560:CDS | 30.0% |
| TTTGCTTCATGAGATTGTTT+GGG | + | chr5_3:49195978-49195997 | Msa0815560:CDS | 30.0% | |
| ! | GATGTTATGGATTTGCTTAA+TGG | + | chr5_3:49196126-49196145 | Msa0815560:CDS | 30.0% |
| !!! | GTTGAGTTTAGTTTTGGATT+CGG | + | chr5_3:49196203-49196222 | Msa0815560:CDS | 30.0% |
| TCTGTCAAATTGTTAGGATA+AGG | - | chr5_3:49196327-49196346 | None:intergenic | 30.0% | |
| TCCTAACAATTTGACAGATT+TGG | + | chr5_3:49196329-49196348 | Msa0815560:CDS | 30.0% | |
| ACCAAATCTGTCAAATTGTT+AGG | - | chr5_3:49196333-49196352 | None:intergenic | 30.0% | |
| GGTTCATCATTCTCAAATTT+CGG | - | chr5_3:49196504-49196523 | None:intergenic | 30.0% | |
| AGTGAAGATGAATGATGTAA+TGG | + | chr5_3:49196620-49196639 | Msa0815560:CDS | 30.0% | |
| ! | AAGATGAATGATGTAATGGA+AGG | + | chr5_3:49196624-49196643 | Msa0815560:CDS | 30.0% |
| ! | TTCGAAAAAGTGGTATTTTG+AGG | + | chr5_3:49196664-49196683 | Msa0815560:CDS | 30.0% |
| !! | TCGAAAAAGTGGTATTTTGA+GGG | + | chr5_3:49196665-49196684 | Msa0815560:CDS | 30.0% |
| GGATTATTGAGTTTGAATTG+TGG | + | chr5_3:49196720-49196739 | Msa0815560:CDS | 30.0% | |
| TGTTGTATTGTTTGTTCCAA+TGG | + | chr5_3:49195774-49195793 | Msa0815560:CDS | 30.0% | |
| GTTGTATTGTTTGTTCCAAT+GGG | + | chr5_3:49195775-49195794 | Msa0815560:CDS | 30.0% | |
| ! | AAATGATGATGTTGTGTTTG+TGG | + | chr5_3:49195933-49195952 | Msa0815560:CDS | 30.0% |
| TTTGCTTCATGAGATTGTTT+GGG | + | chr5_3:49195978-49195997 | Msa0815560:CDS | 30.0% | |
| ! | GATGTTATGGATTTGCTTAA+TGG | + | chr5_3:49196126-49196145 | Msa0815560:CDS | 30.0% |
| !!! | GTTGAGTTTAGTTTTGGATT+CGG | + | chr5_3:49196203-49196222 | Msa0815560:CDS | 30.0% |
| TCTGTCAAATTGTTAGGATA+AGG | - | chr5_3:49196327-49196346 | None:intergenic | 30.0% | |
| TCCTAACAATTTGACAGATT+TGG | + | chr5_3:49196329-49196348 | Msa0815560:CDS | 30.0% | |
| ACCAAATCTGTCAAATTGTT+AGG | - | chr5_3:49196333-49196352 | None:intergenic | 30.0% | |
| GGTTCATCATTCTCAAATTT+CGG | - | chr5_3:49196504-49196523 | None:intergenic | 30.0% | |
| AGTGAAGATGAATGATGTAA+TGG | + | chr5_3:49196620-49196639 | Msa0815560:CDS | 30.0% | |
| ! | AAGATGAATGATGTAATGGA+AGG | + | chr5_3:49196624-49196643 | Msa0815560:CDS | 30.0% |
| ! | TTCGAAAAAGTGGTATTTTG+AGG | + | chr5_3:49196664-49196683 | Msa0815560:CDS | 30.0% |
| !! | TCGAAAAAGTGGTATTTTGA+GGG | + | chr5_3:49196665-49196684 | Msa0815560:CDS | 30.0% |
| GGATTATTGAGTTTGAATTG+TGG | + | chr5_3:49196720-49196739 | Msa0815560:CDS | 30.0% | |
| !! | ATGTTTGGTGCTGTTCAATT+GGG | + | chr5_3:49195736-49195755 | Msa0815560:CDS | 35.0% |
| ATTGTTTGTTCCAATGGGTA+TGG | + | chr5_3:49195780-49195799 | Msa0815560:CDS | 35.0% | |
| ! | CTTTTCATTACTCTTGCAGT+TGG | + | chr5_3:49195850-49195869 | Msa0815560:CDS | 35.0% |
| CTTTGCTTCATGAGATTGTT+TGG | + | chr5_3:49195977-49195996 | Msa0815560:CDS | 35.0% | |
| AAAGGGTCAAAAACCTTACT+TGG | - | chr5_3:49196012-49196031 | None:intergenic | 35.0% | |
| TTAGTGAATGTGAGTTTCAG+AGG | + | chr5_3:49196091-49196110 | Msa0815560:CDS | 35.0% | |
| ! | TGATGAGATGGGTTTGAAAT+TGG | + | chr5_3:49196287-49196306 | Msa0815560:CDS | 35.0% |
| ! | ACATTTGTATCCGGATGTTT+TGG | + | chr5_3:49196371-49196390 | Msa0815560:CDS | 35.0% |
| ! | TTCTGATTATGGTGACTTGT+TGG | + | chr5_3:49196437-49196456 | Msa0815560:CDS | 35.0% |
| !! | TCTGATTATGGTGACTTGTT+GGG | + | chr5_3:49196438-49196457 | Msa0815560:CDS | 35.0% |
| ATACCTAGCCAAAACAAATG+CGG | - | chr5_3:49196558-49196577 | None:intergenic | 35.0% | |
| AAACTCTATGTTGAATACGC+AGG | + | chr5_3:49196590-49196609 | Msa0815560:CDS | 35.0% | |
| CCTATATCGAGTAGTTGAAA+TGG | - | chr5_3:49196702-49196721 | None:intergenic | 35.0% | |
| CCATTTCAACTACTCGATAT+AGG | + | chr5_3:49196699-49196718 | Msa0815560:CDS | 35.0% | |
| GGAATCAAATGTACAGATGA+TGG | + | chr5_3:49196741-49196760 | Msa0815560:CDS | 35.0% | |
| ! | GATGATGGTATGCATTATGA+TGG | + | chr5_3:49196756-49196775 | Msa0815560:CDS | 35.0% |
| !! | ATGTTTGGTGCTGTTCAATT+GGG | + | chr5_3:49195736-49195755 | Msa0815560:CDS | 35.0% |
| ATTGTTTGTTCCAATGGGTA+TGG | + | chr5_3:49195780-49195799 | Msa0815560:CDS | 35.0% | |
| ! | CTTTTCATTACTCTTGCAGT+TGG | + | chr5_3:49195850-49195869 | Msa0815560:CDS | 35.0% |
| CTTTGCTTCATGAGATTGTT+TGG | + | chr5_3:49195977-49195996 | Msa0815560:CDS | 35.0% | |
| AAAGGGTCAAAAACCTTACT+TGG | - | chr5_3:49196012-49196031 | None:intergenic | 35.0% | |
| TTAGTGAATGTGAGTTTCAG+AGG | + | chr5_3:49196091-49196110 | Msa0815560:CDS | 35.0% | |
| ! | TGATGAGATGGGTTTGAAAT+TGG | + | chr5_3:49196287-49196306 | Msa0815560:CDS | 35.0% |
| ! | ACATTTGTATCCGGATGTTT+TGG | + | chr5_3:49196371-49196390 | Msa0815560:CDS | 35.0% |
| ! | TTCTGATTATGGTGACTTGT+TGG | + | chr5_3:49196437-49196456 | Msa0815560:CDS | 35.0% |
| !! | TCTGATTATGGTGACTTGTT+GGG | + | chr5_3:49196438-49196457 | Msa0815560:CDS | 35.0% |
| ATACCTAGCCAAAACAAATG+CGG | - | chr5_3:49196558-49196577 | None:intergenic | 35.0% | |
| AAACTCTATGTTGAATACGC+AGG | + | chr5_3:49196590-49196609 | Msa0815560:CDS | 35.0% | |
| CCTATATCGAGTAGTTGAAA+TGG | - | chr5_3:49196702-49196721 | None:intergenic | 35.0% | |
| CCATTTCAACTACTCGATAT+AGG | + | chr5_3:49196699-49196718 | Msa0815560:CDS | 35.0% | |
| GGAATCAAATGTACAGATGA+TGG | + | chr5_3:49196741-49196760 | Msa0815560:CDS | 35.0% | |
| ! | GATGATGGTATGCATTATGA+TGG | + | chr5_3:49196756-49196775 | Msa0815560:CDS | 35.0% |
| ! | AGGTTTTTGACCCTTTGTTG+AGG | + | chr5_3:49196016-49196035 | Msa0815560:CDS | 40.0% |
| GCTTAAGAGGAAGGATGTTA+TGG | + | chr5_3:49196113-49196132 | Msa0815560:CDS | 40.0% | |
| ! | TGGATTTGCTTAATGGGTCT+TGG | + | chr5_3:49196133-49196152 | Msa0815560:CDS | 40.0% |
| ! | GGATTTGCTTAATGGGTCTT+GGG | + | chr5_3:49196134-49196153 | Msa0815560:CDS | 40.0% |
| GGTCTTGGGTTATGATTGTA+GGG | + | chr5_3:49196148-49196167 | Msa0815560:CDS | 40.0% | |
| GTCTTGGGTTATGATTGTAG+GGG | + | chr5_3:49196149-49196168 | Msa0815560:CDS | 40.0% | |
| !!! | GTTTAGTTTTGGATTCGGAG+CGG | + | chr5_3:49196208-49196227 | Msa0815560:CDS | 40.0% |
| !!! | TTTAGTTTTGGATTCGGAGC+GGG | + | chr5_3:49196209-49196228 | Msa0815560:CDS | 40.0% |
| !!! | TATCCGGATGTTTTGGTGAT+GGG | + | chr5_3:49196378-49196397 | Msa0815560:CDS | 40.0% |
| !! | CTGATTATGGTGACTTGTTG+GGG | + | chr5_3:49196439-49196458 | Msa0815560:CDS | 40.0% |
| TTCTCAAATTTCGGCGAAAC+AGG | - | chr5_3:49196495-49196514 | None:intergenic | 40.0% | |
| ! | TTAGATCGCCGCATTTGTTT+TGG | + | chr5_3:49196547-49196566 | Msa0815560:CDS | 40.0% |
| !! | AGTGGTATTTTGAGGGAGTT+TGG | + | chr5_3:49196672-49196691 | Msa0815560:CDS | 40.0% |
| ! | AGGTTTTTGACCCTTTGTTG+AGG | + | chr5_3:49196016-49196035 | Msa0815560:CDS | 40.0% |
| GCTTAAGAGGAAGGATGTTA+TGG | + | chr5_3:49196113-49196132 | Msa0815560:CDS | 40.0% | |
| ! | TGGATTTGCTTAATGGGTCT+TGG | + | chr5_3:49196133-49196152 | Msa0815560:CDS | 40.0% |
| ! | GGATTTGCTTAATGGGTCTT+GGG | + | chr5_3:49196134-49196153 | Msa0815560:CDS | 40.0% |
| GGTCTTGGGTTATGATTGTA+GGG | + | chr5_3:49196148-49196167 | Msa0815560:CDS | 40.0% | |
| GTCTTGGGTTATGATTGTAG+GGG | + | chr5_3:49196149-49196168 | Msa0815560:CDS | 40.0% | |
| !!! | GTTTAGTTTTGGATTCGGAG+CGG | + | chr5_3:49196208-49196227 | Msa0815560:CDS | 40.0% |
| !!! | TTTAGTTTTGGATTCGGAGC+GGG | + | chr5_3:49196209-49196228 | Msa0815560:CDS | 40.0% |
| !!! | TATCCGGATGTTTTGGTGAT+GGG | + | chr5_3:49196378-49196397 | Msa0815560:CDS | 40.0% |
| !! | CTGATTATGGTGACTTGTTG+GGG | + | chr5_3:49196439-49196458 | Msa0815560:CDS | 40.0% |
| TTCTCAAATTTCGGCGAAAC+AGG | - | chr5_3:49196495-49196514 | None:intergenic | 40.0% | |
| ! | TTAGATCGCCGCATTTGTTT+TGG | + | chr5_3:49196547-49196566 | Msa0815560:CDS | 40.0% |
| !! | AGTGGTATTTTGAGGGAGTT+TGG | + | chr5_3:49196672-49196691 | Msa0815560:CDS | 40.0% |
| TTTGTTCCAATGGGTATGGC+TGG | + | chr5_3:49195784-49195803 | Msa0815560:CDS | 45.0% | |
| GTTGTGTTTGTGGAAGATCG+TGG | + | chr5_3:49195943-49195962 | Msa0815560:CDS | 45.0% | |
| GCTTCATGAGATTGTTTGGG+AGG | + | chr5_3:49195981-49196000 | Msa0815560:CDS | 45.0% | |
| TTGGGAGGTTATGCCAAGTA+AGG | + | chr5_3:49195996-49196015 | Msa0815560:CDS | 45.0% | |
| GTGAGTTTCAGAGGCTTAAG+AGG | + | chr5_3:49196100-49196119 | Msa0815560:CDS | 45.0% | |
| GTTTCAGAGGCTTAAGAGGA+AGG | + | chr5_3:49196104-49196123 | Msa0815560:CDS | 45.0% | |
| GGGTCTTGGGTTATGATTGT+AGG | + | chr5_3:49196147-49196166 | Msa0815560:CDS | 45.0% | |
| TTGTAGGGGATTCACAAGCT+AGG | + | chr5_3:49196163-49196182 | Msa0815560:CDS | 45.0% | |
| !!! | GTATCCGGATGTTTTGGTGA+TGG | + | chr5_3:49196377-49196396 | Msa0815560:CDS | 45.0% |
| GAACCCATCACCAAAACATC+CGG | - | chr5_3:49196384-49196403 | None:intergenic | 45.0% | |
| !!! | GATGTTTTGGTGATGGGTTC+TGG | + | chr5_3:49196384-49196403 | Msa0815560:CDS | 45.0% |
| TGAGAATGATGAACCTGCGA+TGG | + | chr5_3:49196509-49196528 | Msa0815560:CDS | 45.0% | |
| GAGAATGATGAACCTGCGAT+GGG | + | chr5_3:49196510-49196529 | Msa0815560:CDS | 45.0% | |
| ! | TGCGATGGGTTCTGTTTCAT+CGG | + | chr5_3:49196524-49196543 | Msa0815560:CDS | 45.0% |
| GAGAGAGAGCTTCGAAAAAG+TGG | + | chr5_3:49196654-49196673 | Msa0815560:CDS | 45.0% | |
| !! | GGTATTTTGAGGGAGTTTGG+TGG | + | chr5_3:49196675-49196694 | Msa0815560:CDS | 45.0% |
| TTTGTTCCAATGGGTATGGC+TGG | + | chr5_3:49195784-49195803 | Msa0815560:CDS | 45.0% | |
| GTTGTGTTTGTGGAAGATCG+TGG | + | chr5_3:49195943-49195962 | Msa0815560:CDS | 45.0% | |
| GCTTCATGAGATTGTTTGGG+AGG | + | chr5_3:49195981-49196000 | Msa0815560:CDS | 45.0% | |
| TTGGGAGGTTATGCCAAGTA+AGG | + | chr5_3:49195996-49196015 | Msa0815560:CDS | 45.0% | |
| GTGAGTTTCAGAGGCTTAAG+AGG | + | chr5_3:49196100-49196119 | Msa0815560:CDS | 45.0% | |
| GTTTCAGAGGCTTAAGAGGA+AGG | + | chr5_3:49196104-49196123 | Msa0815560:CDS | 45.0% | |
| GGGTCTTGGGTTATGATTGT+AGG | + | chr5_3:49196147-49196166 | Msa0815560:CDS | 45.0% | |
| TTGTAGGGGATTCACAAGCT+AGG | + | chr5_3:49196163-49196182 | Msa0815560:CDS | 45.0% | |
| !!! | GTATCCGGATGTTTTGGTGA+TGG | + | chr5_3:49196377-49196396 | Msa0815560:CDS | 45.0% |
| GAACCCATCACCAAAACATC+CGG | - | chr5_3:49196384-49196403 | None:intergenic | 45.0% | |
| !!! | GATGTTTTGGTGATGGGTTC+TGG | + | chr5_3:49196384-49196403 | Msa0815560:CDS | 45.0% |
| TGAGAATGATGAACCTGCGA+TGG | + | chr5_3:49196509-49196528 | Msa0815560:CDS | 45.0% | |
| GAGAATGATGAACCTGCGAT+GGG | + | chr5_3:49196510-49196529 | Msa0815560:CDS | 45.0% | |
| ! | TGCGATGGGTTCTGTTTCAT+CGG | + | chr5_3:49196524-49196543 | Msa0815560:CDS | 45.0% |
| GAGAGAGAGCTTCGAAAAAG+TGG | + | chr5_3:49196654-49196673 | Msa0815560:CDS | 45.0% | |
| !! | GGTATTTTGAGGGAGTTTGG+TGG | + | chr5_3:49196675-49196694 | Msa0815560:CDS | 45.0% |
| TTCCAATGGGTATGGCTGGT+TGG | + | chr5_3:49195788-49195807 | Msa0815560:CDS | 50.0% | |
| !! | TGGTGATGGGTTCTGGTTTG+TGG | + | chr5_3:49196391-49196410 | Msa0815560:CDS | 50.0% |
| GATGAAACAGAACCCATCGC+AGG | - | chr5_3:49196525-49196544 | None:intergenic | 50.0% | |
| !!! | TCGCCGCATTTGTTTTGGCT+AGG | + | chr5_3:49196552-49196571 | Msa0815560:CDS | 50.0% |
| TTCCAATGGGTATGGCTGGT+TGG | + | chr5_3:49195788-49195807 | Msa0815560:CDS | 50.0% | |
| !! | TGGTGATGGGTTCTGGTTTG+TGG | + | chr5_3:49196391-49196410 | Msa0815560:CDS | 50.0% |
| GATGAAACAGAACCCATCGC+AGG | - | chr5_3:49196525-49196544 | None:intergenic | 50.0% | |
| !!! | TCGCCGCATTTGTTTTGGCT+AGG | + | chr5_3:49196552-49196571 | Msa0815560:CDS | 50.0% |
| TGCCAACCAGCCATACCCAT+TGG | - | chr5_3:49195793-49195812 | None:intergenic | 55.0% | |
| !! | GGATTCGGAGCGGGTTGAAT+CGG | + | chr5_3:49196218-49196237 | Msa0815560:CDS | 55.0% |
| TGCCAACCAGCCATACCCAT+TGG | - | chr5_3:49195793-49195812 | None:intergenic | 55.0% | |
| !! | GGATTCGGAGCGGGTTGAAT+CGG | + | chr5_3:49196218-49196237 | Msa0815560:CDS | 55.0% |
| !! | CGGAGCGGGTTGAATCGGTT+AGG | + | chr5_3:49196223-49196242 | Msa0815560:CDS | 60.0% |
| !! | CGGAGCGGGTTGAATCGGTT+AGG | + | chr5_3:49196223-49196242 | Msa0815560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 49195736 | 49196848 | 49195736 | ID=Msa0815560;Name=Msa0815560 |
| chr5_3 | mRNA | 49195736 | 49196848 | 49195736 | ID=Msa0815560-mRNA-1;Parent=Msa0815560;Name=Msa0815560-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|370 |
| chr5_3 | exon | 49195736 | 49196848 | 49195736 | ID=Msa0815560-mRNA-1:exon:14790;Parent=Msa0815560-mRNA-1 |
| chr5_3 | CDS | 49195736 | 49196848 | 49195736 | ID=Msa0815560-mRNA-1:cds;Parent=Msa0815560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
