AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108870 MtrunA17_Chr1g0165771 96.018 904 31 2 1 904 1 899 0.0 1780
Msa0108870 MtrunA17_Chr4g0021051 63.522 954 224 13 11 904 23 912 0.0 1052
Msa0108870 MtrunA17_Chr3g0142991 64.809 628 135 12 15 640 14 557 0.0 675
Msa0108870 MtrunA17_Chr3g0143181 59.913 459 115 12 9 466 7 397 5.00e-137 416
Msa0108870 MtrunA17_Chr3g0143201 71.685 279 48 2 642 889 13 291 1.03e-127 388
Msa0108870 MtrunA17_Chr3g0143131 56.576 479 123 13 9 466 7 421 3.71e-125 386
Msa0108870 MtrunA17_Chr3g0143091 69.919 246 42 2 642 883 52 269 1.19e-108 335
Msa0108870 MtrunA17_Chr3g0143191 81.503 173 32 0 468 640 6 178 1.07e-91 287
Msa0108870 MtrunA17_Chr3g0143001 69.767 172 37 1 642 798 33 204 2.03e-73 240
Msa0108870 MtrunA17_Chr3g0143111 81.132 53 10 0 495 547 9 61 9.94e-26 102
Msa0108870 MtrunA17_Chr3g0143101 88.636 44 5 0 597 640 2 45 7.98e-18 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108870 AT5G55310.1 58.728 802 259 12 149 904 136 911 0.0 884
Msa0108870 AT5G55300.1 59.603 807 273 14 140 904 118 913 0.0 873
Msa0108870 AT5G55300.2 59.577 804 272 14 140 901 118 910 0.0 865
Msa0108870 AT5G55300.3 71.591 264 70 1 646 904 298 561 1.57e-126 394
Msa0108870 AT4G26701.1 85.294 68 10 0 837 904 2 69 3.21e-35 128

Find 231 sgRNAs with CRISPR-Local

Find 598 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCATGTGATTCAGAATT+TGG 0.154512 1_3:+20530898 Msa0108870:CDS
GTTATTCAAATACGTGTTTC+TGG 0.158393 1_3:+20533049 Msa0108870:CDS
GCTACAGAATAATAATAATT+TGG 0.158467 1_3:+20529721 Msa0108870:CDS
AATTGTTCATTTAACTAATC+TGG 0.187536 1_3:+20536064 Msa0108870:three_prime_UTR
TTTGTATGTCTTCATCTTAT+AGG 0.217698 1_3:-20535929 None:intergenic
TGGCATGCTTATTCATTCTT+TGG 0.234370 1_3:-20530021 None:intergenic
AGAATTATATAGAGAGAATT+AGG 0.239346 1_3:+20533237 Msa0108870:intron
ATCATTCACTTTGGATGATA+TGG 0.241509 1_3:+20534324 Msa0108870:CDS
ATCCCTGTCCCCTTTCTTCA+TGG 0.254289 1_3:+20536095 Msa0108870:three_prime_UTR
GACTGACTGGAAGGTGATAT+TGG 0.273127 1_3:+20530871 Msa0108870:CDS
TCGGAGGAGGGAAGGGAGTT+GGG 0.275437 1_3:-20527527 None:intergenic
TTGAATAACTTATTATTGAT+TGG 0.287792 1_3:-20533035 None:intergenic
CAAAATTCAAGGAAAACTTT+TGG 0.292105 1_3:+20530849 Msa0108870:CDS
TTCTGGGAGCTAGTAGTTCT+TGG 0.297922 1_3:+20533066 Msa0108870:CDS
TATATACATGTTAGATAATC+AGG 0.316608 1_3:+20527443 Msa0108870:five_prime_UTR
AATCCTACCTCCTCTTGTTC+AGG 0.326070 1_3:-20530310 None:intergenic
AGTTCAAAATTTGCATCATT+AGG 0.330398 1_3:+20529413 Msa0108870:CDS
CAGATGATTTGATGAAGTTC+AGG 0.333592 1_3:-20527476 None:intergenic
TTATCTAGTGGTCTCTTAAC+AGG 0.340703 1_3:-20529860 None:intergenic
TCACCAGGAATAGGACATTC+AGG 0.342349 1_3:-20532843 None:intergenic
TGGGGTAAAGATGCTCTATA+AGG 0.344361 1_3:+20530267 Msa0108870:CDS
GGCATGCTTATTCATTCTTT+GGG 0.347185 1_3:-20530020 None:intergenic
TCCCGTTCATGTTCATGTTA+AGG 0.348445 1_3:+20529469 Msa0108870:CDS
CCATTTGCAGAAGGCACGTC+AGG 0.348723 1_3:-20529254 None:intergenic
TCCTTGGTAAAGATTCTATC+AGG 0.354466 1_3:+20534050 Msa0108870:CDS
AAGTTCCGTTTGGTCTTTAG+AGG 0.356619 1_3:-20535057 None:intergenic
ATTGTTATTGTTATTATGTA+TGG 0.358468 1_3:+20536212 Msa0108870:three_prime_UTR
GGCTTGTGGTAAATTAAATA+TGG 0.359173 1_3:+20529100 Msa0108870:exon
CGGAGGAGGGAAGGGAGTTG+GGG 0.360947 1_3:-20527526 None:intergenic
GTGGATAATGAGGCAAAGTT+TGG 0.363017 1_3:+20536167 Msa0108870:three_prime_UTR
TATATGACAACAGTTGAATA+AGG 0.363255 1_3:+20534615 Msa0108870:intron
AGTGACGTCGTAATTAATAT+TGG 0.364207 1_3:+20532804 Msa0108870:CDS
CAGTTACTTGGTTGGCGTAT+TGG 0.364362 1_3:+20533006 Msa0108870:CDS
CTACAGAATAATAATAATTT+GGG 0.367356 1_3:+20529722 Msa0108870:CDS
AAAGCTGTATATTACGCTTC+AGG 0.368246 1_3:-20535084 None:intergenic
TTCAAAATGGCATTGTAAAC+AGG 0.369518 1_3:-20534100 None:intergenic
CACTGCTGGAAAAGTTTGCT+TGG 0.371389 1_3:+20535871 Msa0108870:CDS
CCACAGCTATTTGTCAACTA+TGG 0.375194 1_3:-20529076 None:intergenic
CGTTCTGTGAGCTAGAACTT+TGG 0.378900 1_3:-20529277 None:intergenic
TGAATAACTTATTATTGATT+GGG 0.379082 1_3:-20533034 None:intergenic
TGAGATTTGTTGACAACAAC+AGG 0.380616 1_3:-20529659 None:intergenic
TTTACCCCATGGGGCTTGTA+AGG 0.383102 1_3:-20530253 None:intergenic
ATTGTTCATTTAACTAATCT+GGG 0.383476 1_3:+20536065 Msa0108870:three_prime_UTR
GTCGGAGGAGGGAAGGGAGT+TGG 0.384859 1_3:-20527528 None:intergenic
GGGATCTAGGTAGTTTATCT+TGG 0.388665 1_3:-20535276 None:intergenic
TGAGATTTCTTGACGACAAC+AGG 0.389867 1_3:-20529614 None:intergenic
TTCCACGGCAGATGCCTTAG+AGG 0.390932 1_3:-20529321 None:intergenic
AACTGTTCTGATTTATTGCC+TGG 0.391976 1_3:-20530145 None:intergenic
GTTCAGAAAGGACAGCAATA+TGG 0.394323 1_3:+20529797 Msa0108870:CDS
TGTCTCAACCTCAACCTCTA+AGG 0.400713 1_3:+20529307 Msa0108870:CDS
TATTGACAAACTAGCTTTGA+GGG 0.401248 1_3:+20533328 Msa0108870:CDS
ACCTATGTGAGGTCCCCTTC+AGG 0.407241 1_3:+20529389 Msa0108870:CDS
AAAAGTTCTTGTCTATAATC+AGG 0.410472 1_3:+20534663 Msa0108870:CDS
GCACCAGGCAACTGATATCC+TGG 0.414673 1_3:-20535297 None:intergenic
GGAATAGGACATTCAGGAAT+TGG 0.414990 1_3:-20532837 None:intergenic
ATTCCTGAATGTCCTATTCC+TGG 0.417771 1_3:+20532840 Msa0108870:CDS
TTTGATGAAGTTCAGGTTGC+CGG 0.420700 1_3:-20527469 None:intergenic
TGAGATTGTGTGGTCGGAGG+AGG 0.422932 1_3:-20527540 None:intergenic
TTGTGTGGTCGGAGGAGGGA+AGG 0.428133 1_3:-20527535 None:intergenic
ATTTGGCACCAATCATAAAT+CGG 0.428927 1_3:-20530938 None:intergenic
TTATTCATTCTTTGGGAAAG+AGG 0.430629 1_3:-20530013 None:intergenic
TCCTTAACATGAACATGAAC+GGG 0.432434 1_3:-20529470 None:intergenic
AAATACCTTTCACCAGGAAT+AGG 0.432646 1_3:-20532852 None:intergenic
CCTGACGTGCCTTCTGCAAA+TGG 0.434901 1_3:+20529254 Msa0108870:CDS
TCGTCCTCCTCCGCAACCTT+CGG 0.434933 1_3:-20529974 None:intergenic
TATATTATCCATCTCGTCTT+CGG 0.438591 1_3:-20529540 None:intergenic
TTCAGGAGCCAAGTTCCGTT+TGG 0.438748 1_3:-20535067 None:intergenic
TTATTCAAATACGTGTTTCT+GGG 0.442275 1_3:+20533050 Msa0108870:CDS
TGAAAAGATTGATGAACTTA+AGG 0.443289 1_3:+20534858 Msa0108870:CDS
ACTTTACACCGATTTATGAT+TGG 0.443998 1_3:+20530930 Msa0108870:CDS
ATTCAATGCATCATTCACTT+TGG 0.446415 1_3:+20534315 Msa0108870:CDS
TCTAAAGACCAAACGGAACT+TGG 0.446555 1_3:+20535059 Msa0108870:CDS
TTCTGCCCATCACCGGAGCT+TGG 0.447038 1_3:-20530187 None:intergenic
CCTTTCTGAACATTTGAAAG+TGG 0.447386 1_3:-20529785 None:intergenic
TGTGTGGTCGGAGGAGGGAA+GGG 0.447543 1_3:-20527534 None:intergenic
GGGGTAAAGATGCTCTATAA+GGG 0.452829 1_3:+20530268 Msa0108870:CDS
TGAGAAAGCAAGGGCGTTGA+AGG 0.458385 1_3:+20533115 Msa0108870:CDS
TGAACCGAAGGTTGCGGAGG+AGG 0.463547 1_3:+20529970 Msa0108870:CDS
CAACTGATATCCTGGGATCT+AGG 0.463630 1_3:-20535289 None:intergenic
GGGAGCTAGTAGTTCTTGGA+AGG 0.463756 1_3:+20533070 Msa0108870:CDS
CTATAATCAGGCAAACAAAC+AGG 0.466715 1_3:+20534675 Msa0108870:CDS
ACTGCTGGAAAAGTTTGCTT+GGG 0.469370 1_3:+20535872 Msa0108870:CDS
ATATTAATTACGACGTCACT+TGG 0.474080 1_3:-20532801 None:intergenic
ATAATATACCATTGAGTGCT+AGG 0.475378 1_3:+20529555 Msa0108870:CDS
GAATTATATAGAGAGAATTA+GGG 0.478214 1_3:+20533238 Msa0108870:intron
TTAATGCAGTTTGACTTCCT+TGG 0.478589 1_3:+20534034 Msa0108870:intron
TTGGGGAGTAGCTGAAGAAC+AGG 0.479535 1_3:-20527509 None:intergenic
CACCTCCTTACAAGCCCCAT+GGG 0.479803 1_3:+20530248 Msa0108870:CDS
AGCTGAAAACAGATTACGAC+AGG 0.483270 1_3:+20535016 Msa0108870:CDS
ATCCTACCTCCTCTTGTTCA+GGG 0.483545 1_3:-20530309 None:intergenic
CCAGGACTGTTCCGTGGACG+TGG 0.487654 1_3:+20532584 Msa0108870:CDS
CATGCAAAAGGCAAAATTCA+AGG 0.488666 1_3:+20530838 Msa0108870:CDS
GGCAGATGCCTTAGAGGTTG+AGG 0.488896 1_3:-20529315 None:intergenic
GACAAACTAGCTTTGAGGGC+TGG 0.489859 1_3:+20533332 Msa0108870:CDS
TTATTGACAAACTAGCTTTG+AGG 0.490023 1_3:+20533327 Msa0108870:CDS
TGATTGGTGCCAAATTGAAA+AGG 0.492961 1_3:+20530946 Msa0108870:CDS
TTTGACAGTCCATGAAGAAA+GGG 0.497273 1_3:-20536104 None:intergenic
TTCCTCCAAGCTCCGGTGAT+GGG 0.501424 1_3:+20530182 Msa0108870:CDS
AACCTCGTGCCGCTTGCACC+AGG 0.501592 1_3:-20535312 None:intergenic
CCACCTCCTTACAAGCCCCA+TGG 0.506147 1_3:+20530247 Msa0108870:CDS
TTGAATAAGGATACTAAAGA+TGG 0.506735 1_3:+20534628 Msa0108870:CDS
GTTTGACAGTCCATGAAGAA+AGG 0.510083 1_3:-20536105 None:intergenic
ATCCCAGGATATCAGTTGCC+TGG 0.512138 1_3:+20535294 Msa0108870:CDS
ATCTGCCGTGGAATCTTCTG+TGG 0.512707 1_3:+20529331 Msa0108870:CDS
TGTTCAGGGGTCAAAGTCAC+CGG 0.512937 1_3:-20530295 None:intergenic
ATCTTCATCCTAGCACTCAA+TGG 0.514251 1_3:-20529563 None:intergenic
TACATGTGGGCTATTGTTGA+TGG 0.514793 1_3:+20532126 Msa0108870:CDS
AGGTCTCAGAATCTGAAGTC+AGG 0.515223 1_3:-20535909 None:intergenic
GAGATTGTGTGGTCGGAGGA+GGG 0.515890 1_3:-20527539 None:intergenic
TGCCCATCACCGGAGCTTGG+AGG 0.518261 1_3:-20530184 None:intergenic
ATGGTTAAATGTGGATAATG+AGG 0.518372 1_3:+20536157 Msa0108870:three_prime_UTR
CCACGTCCACGGAACAGTCC+TGG 0.521504 1_3:-20532584 None:intergenic
CTTCCTCCAAGCTCCGGTGA+TGG 0.522085 1_3:+20530181 Msa0108870:CDS
AGTCCATGAAGAAAGGGGAC+AGG 0.522762 1_3:-20536098 None:intergenic
GACATGATAATACAGTTACT+TGG 0.523194 1_3:+20532994 Msa0108870:CDS
GCACGAGGTTCCTATTGAAA+AGG 0.523214 1_3:+20535325 Msa0108870:CDS
ACTGACTGGAAGGTGATATT+GGG 0.524562 1_3:+20530872 Msa0108870:CDS
TGTTGATGGTGTTAAAGAGA+AGG 0.524705 1_3:+20532140 Msa0108870:CDS
TTAGCATTAATCGATGGAGC+TGG 0.524741 1_3:-20529929 None:intergenic
ATAGAGCATCTTTACCCCAT+GGG 0.525433 1_3:-20530263 None:intergenic
ACCCCATGGGGCTTGTAAGG+AGG 0.526519 1_3:-20530250 None:intergenic
TGATAATACAGTTACTTGGT+TGG 0.529080 1_3:+20532998 Msa0108870:CDS
CCATGGGGCTTGTAAGGAGG+TGG 0.531241 1_3:-20530247 None:intergenic
CGAGGTTGAGATTGTGTGGT+CGG 0.531526 1_3:-20527546 None:intergenic
GGAGGAGAAAATGAAACAAG+AGG 0.531842 1_3:+20532098 Msa0108870:CDS
GGAAAATTGAAAAGACGCAT+TGG 0.538081 1_3:+20532777 Msa0108870:CDS
GGATACAGAATACATGCAAA+AGG 0.538745 1_3:+20530826 Msa0108870:CDS
CCACTTTCAAATGTTCAGAA+AGG 0.540475 1_3:+20529785 Msa0108870:CDS
TAATTCTAGCAAACATGGTA+AGG 0.541301 1_3:+20529499 Msa0108870:CDS
CACCAGGCAACTGATATCCT+GGG 0.546235 1_3:-20535296 None:intergenic
GGAAAAGTTTGCTTGGGCAA+TGG 0.546584 1_3:+20535878 Msa0108870:CDS
CTCTTAACAGGCAGTGTAGA+CGG 0.549550 1_3:-20529848 None:intergenic
AACATTATATGCGGTCATGC+GGG 0.549931 1_3:+20530805 Msa0108870:CDS
CAGCAATATGGCTCTAATGT+TGG 0.550006 1_3:+20529809 Msa0108870:CDS
TATAGAGCATCTTTACCCCA+TGG 0.551768 1_3:-20530264 None:intergenic
CTCCTTAACATGAACATGAA+CGG 0.552218 1_3:-20529471 None:intergenic
TACATTAAATAGTCATCTGA+AGG 0.554760 1_3:+20534255 Msa0108870:CDS
GACTTTGACCCCTGAACAAG+AGG 0.554890 1_3:+20530300 Msa0108870:CDS
ACGTCGTAATTAATATTGGA+AGG 0.557597 1_3:+20532808 Msa0108870:CDS
CACGAATTTGATGATGAAGA+TGG 0.559170 1_3:+20529125 Msa0108870:CDS
ACTAAACTTCCTCCAAGCTC+CGG 0.560775 1_3:+20530175 Msa0108870:CDS
TGTCGCCTCTAAAGACCAAA+CGG 0.560846 1_3:+20535052 Msa0108870:CDS
TGAAGAATCCGAAGACGAGA+TGG 0.562000 1_3:+20529532 Msa0108870:CDS
TGAATGATGCATTGAATGTA+CGG 0.565223 1_3:-20534309 None:intergenic
CTCAATTGCATTCAGAAACA+AGG 0.566548 1_3:+20529186 Msa0108870:CDS
AGAAGGTGACAACAAGTTGA+AGG 0.567237 1_3:+20533892 Msa0108870:CDS
CATTTGCAGAAGGCACGTCA+GGG 0.569400 1_3:-20529253 None:intergenic
GAACTTTGGCCATTTGCAGA+AGG 0.570536 1_3:-20529263 None:intergenic
ATGTTGGTATTAAACAAGAA+AGG 0.570563 1_3:+20529825 Msa0108870:CDS
ATGATATTCCTTTGTCAGCA+AGG 0.571899 1_3:+20529696 Msa0108870:CDS
GTCTGTTTAGCATTAATCGA+TGG 0.573042 1_3:-20529935 None:intergenic
GACAATAATTCTAGCAAACA+TGG 0.574782 1_3:+20529494 Msa0108870:CDS
CAACATTATATGCGGTCATG+CGG 0.575973 1_3:+20530804 Msa0108870:CDS
TGCCTGGTGCAAGCGGCACG+AGG 0.576438 1_3:+20535310 Msa0108870:CDS
GTAGAAAATGTGACTGCAGA+AGG 0.580405 1_3:+20533875 Msa0108870:CDS
GAAATCTGAACCGAAGGTTG+CGG 0.580628 1_3:+20529964 Msa0108870:CDS
AGGAAAAGTATGAGAAAGCA+AGG 0.580780 1_3:+20533105 Msa0108870:CDS
CGTTCATGTTCATGTTAAGG+AGG 0.581195 1_3:+20529472 Msa0108870:CDS
AACCTCTAAGGCATCTGCCG+TGG 0.583051 1_3:+20529319 Msa0108870:CDS
AATGTCCTATTCCTGGTGAA+AGG 0.583669 1_3:+20532847 Msa0108870:CDS
ATGTTAGATAATCAGGTCAC+CGG 0.585615 1_3:+20527450 Msa0108870:five_prime_UTR
ATCTGAACCGAAGGTTGCGG+AGG 0.586300 1_3:+20529967 Msa0108870:CDS
TCATTATCCACATTTAACCA+TGG 0.588062 1_3:-20536155 None:intergenic
GATGAGTGAGGAAGAGAACG+AGG 0.588596 1_3:-20527564 None:intergenic
ATCGGTGAAATCTGAACCGA+AGG 0.590409 1_3:+20529958 Msa0108870:CDS
GTGATAACCATGGTTAAATG+TGG 0.591173 1_3:+20536148 Msa0108870:three_prime_UTR
AGATAAACTACCTAGATCCC+AGG 0.592465 1_3:+20535279 Msa0108870:CDS
TGGGATGCTCTCCACGTCCA+CGG 0.594039 1_3:-20532595 None:intergenic
TATCAGTTGCCTGGTGCAAG+CGG 0.597542 1_3:+20535303 Msa0108870:CDS
CATACAAATACAATTATGCA+AGG 0.599976 1_3:+20535944 Msa0108870:three_prime_UTR
GATGCTCTATAAGGGGAAGC+CGG 0.601756 1_3:+20530276 Msa0108870:CDS
TTTGAGGGCTGGCAATGAGA+AGG 0.602681 1_3:+20533343 Msa0108870:CDS
GTATGAAAATACAGTTGAGG+TGG 0.606610 1_3:+20534072 Msa0108870:CDS
GCTGAAGAACAGGTGTTGCA+CGG 0.607776 1_3:-20527499 None:intergenic
ATTATTTAACGTGATAACCA+TGG 0.610847 1_3:+20536138 Msa0108870:three_prime_UTR
GTAATTGTAGGCTCTTTCGA+AGG 0.610961 1_3:+20534993 Msa0108870:intron
TGTAGCCGCCTTGCTGACAA+AGG 0.611232 1_3:-20529704 None:intergenic
GGGTAAAGATGCTCTATAAG+GGG 0.613483 1_3:+20530269 Msa0108870:CDS
TCCTGAAGGGGACCTCACAT+AGG 0.613650 1_3:-20529390 None:intergenic
CGTCGTAATTAATATTGGAA+GGG 0.614872 1_3:+20532809 Msa0108870:CDS
GTCCATGAAGAAAGGGGACA+GGG 0.615243 1_3:-20536097 None:intergenic
GATGAAGATGAAGATGAGTG+AGG 0.615322 1_3:-20527576 None:intergenic
AACAGTAAATACCTTTCACC+AGG 0.615831 1_3:-20532858 None:intergenic
TGGACTACTTTGGTTCACAA+TGG 0.616634 1_3:+20530214 Msa0108870:CDS
TAGTTGACAAATAGCTGTGG+AGG 0.616997 1_3:+20529079 Msa0108870:five_prime_UTR
AAATCTAGTAATAACAATGG+TGG 0.618035 1_3:+20529746 Msa0108870:CDS
TTGTTCATTTAACTAATCTG+GGG 0.621104 1_3:+20536066 Msa0108870:three_prime_UTR
TCTGCCGTGGAATCTTCTGT+GGG 0.622872 1_3:+20529332 Msa0108870:CDS
TAGAGCATCTTTACCCCATG+GGG 0.631056 1_3:-20530262 None:intergenic
TATACCCACAGAAGATTCCA+CGG 0.633738 1_3:-20529336 None:intergenic
GGAGCTAGTAGTTCTTGGAA+GGG 0.634366 1_3:+20533071 Msa0108870:CDS
GAGCTAGTAGTTCTTGGAAG+GGG 0.635071 1_3:+20533072 Msa0108870:CDS
TTCTAGCTCACAGAACGGCA+AGG 0.636392 1_3:+20529283 Msa0108870:CDS
AGAACGAGGTTGAGATTGTG+TGG 0.636979 1_3:-20527550 None:intergenic
CGTGCTGTTTCAAAATCTCA+CGG 0.637487 1_3:+20534814 Msa0108870:CDS
GATTAATGCTAAACAGACAT+CGG 0.637490 1_3:+20529940 Msa0108870:CDS
ATTTGCAGAAGGCACGTCAG+GGG 0.639024 1_3:-20529252 None:intergenic
CATGGGGCTTGTAAGGAGGT+GGG 0.640775 1_3:-20530246 None:intergenic
TCCTACCTCCTCTTGTTCAG+GGG 0.641141 1_3:-20530308 None:intergenic
CAAATAGCTGTGGAGGCTTG+TGG 0.641729 1_3:+20529086 Msa0108870:five_prime_UTR
GACGAAGCTGCTGACACAGT+TGG 0.641967 1_3:+20533836 Msa0108870:CDS
GGAAAATCTAGTAATAACAA+TGG 0.642336 1_3:+20529743 Msa0108870:CDS
CTTCTCATAGTCACGATGGA+CGG 0.642362 1_3:+20529216 Msa0108870:CDS
AGATGATTTAGTCACTGATG+TGG 0.644287 1_3:-20530041 None:intergenic
GGTTGAGATTGTGTGGTCGG+AGG 0.644573 1_3:-20527543 None:intergenic
TTGGAAGGGGCAAAGTGACA+AGG 0.645098 1_3:+20533085 Msa0108870:CDS
GAACCACCAGGACTGTTCCG+TGG 0.646064 1_3:+20532578 Msa0108870:CDS
TGGACGTGGAGAGCATCCCA+AGG 0.646324 1_3:+20532598 Msa0108870:CDS
CAAAGTTCTAGCTCACAGAA+CGG 0.651831 1_3:+20529278 Msa0108870:CDS
ACAAGAGGAGAAATACATGT+GGG 0.652557 1_3:+20532113 Msa0108870:CDS
CCATAGTTGACAAATAGCTG+TGG 0.655992 1_3:+20529076 Msa0108870:five_prime_UTR
AAAATGGCATTGTAAACAGG+AGG 0.658280 1_3:-20534097 None:intergenic
CAAATCTCAAAACCTATGTG+AGG 0.661711 1_3:+20529378 Msa0108870:CDS
TTTCTTAACAGAAGAATGCG+AGG 0.662718 1_3:-20529891 None:intergenic
ATACAAATACAATTATGCAA+GGG 0.664339 1_3:+20535945 Msa0108870:three_prime_UTR
GAGGAATCAGTCTTATCTAG+TGG 0.665670 1_3:-20529872 None:intergenic
TTTGACCCCTGAACAAGAGG+AGG 0.669124 1_3:+20530303 Msa0108870:CDS
ACCTGATAGAATCTTTACCA+AGG 0.670504 1_3:-20534051 None:intergenic
AACAAGAGGAGAAATACATG+TGG 0.673205 1_3:+20532112 Msa0108870:CDS
TCAACTTCTCATAGTCACGA+TGG 0.681705 1_3:+20529212 Msa0108870:CDS
TTGACAGTCCATGAAGAAAG+GGG 0.682317 1_3:-20536103 None:intergenic
GGAAAAGTATGAGAAAGCAA+GGG 0.683454 1_3:+20533106 Msa0108870:CDS
GCAGGTTGCAACATTATATG+CGG 0.686021 1_3:+20530796 Msa0108870:intron
CAGGTATGAAAATACAGTTG+AGG 0.687734 1_3:+20534069 Msa0108870:CDS
TTATATAGAGAGAATTAGGG+CGG 0.700748 1_3:+20533241 Msa0108870:CDS
CGTCCACGGAACAGTCCTGG+TGG 0.703564 1_3:-20532581 None:intergenic
ACCTCCTTACAAGCCCCATG+GGG 0.724905 1_3:+20530249 Msa0108870:CDS
ATAGCAAAAGCATAATCACA+AGG 0.731248 1_3:+20527606 Msa0108870:five_prime_UTR
ATATTCCTTTGTCAGCAAGG+CGG 0.731343 1_3:+20529699 Msa0108870:CDS
AGGATGAAGATGAACAGTGA+CGG 0.750770 1_3:+20529575 Msa0108870:CDS
GCTGAAAACAGATTACGACA+GGG 0.763147 1_3:+20535017 Msa0108870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATTTTTATTCATCT+TGG + chr1_3:20527695-20527714 Msa0108870:intron 10.0%
!!! AAGATTATATATTTTTTAGT+TGG + chr1_3:20527856-20527875 Msa0108870:intron 10.0%
!! ATACTAATTTATTTAATGTT+AGG - chr1_3:20531255-20531274 None:intergenic 10.0%
!!! TAATTTTTGTTAAATCTTTT+AGG + chr1_3:20532538-20532557 Msa0108870:intron 10.0%
!!! TTATACTTTATTTTATTAGA+TGG + chr1_3:20532755-20532774 Msa0108870:intron 10.0%
!!! TATACTTTATTTTATTAGAT+GGG + chr1_3:20532756-20532775 Msa0108870:intron 10.0%
!!! ATTTATGTTATTTTGTTGAT+TGG + chr1_3:20527774-20527793 Msa0108870:intron 15.0%
!! ATTATGATTATGATTAAGAT+TGG + chr1_3:20527815-20527834 Msa0108870:intron 15.0%
!!! AACACAAAAAATATAGATTT+TGG + chr1_3:20528117-20528136 Msa0108870:intron 15.0%
!!! GTTTTATTCATTATTAAGAT+GGG + chr1_3:20528376-20528395 Msa0108870:intron 15.0%
!! CTACAGAATAATAATAATTT+GGG + chr1_3:20529722-20529741 Msa0108870:CDS 15.0%
!!! TTTACAAGTATATATTTTGT+GGG + chr1_3:20530467-20530486 Msa0108870:intron 15.0%
!! TTTAGAAAAATAAAACTCTT+CGG - chr1_3:20530674-20530693 None:intergenic 15.0%
!!! TGATAATTGTTATTGTTTAT+TGG + chr1_3:20532627-20532646 Msa0108870:intron 15.0%
!!! TGAATAACTTATTATTGATT+GGG - chr1_3:20533037-20533056 None:intergenic 15.0%
!! TTGAATAACTTATTATTGAT+TGG - chr1_3:20533038-20533057 None:intergenic 15.0%
!!! TAAAAGAACCTTTTTAATTT+TGG + chr1_3:20533193-20533212 Msa0108870:intron 15.0%
!!! ACTTCAATATAGTTTTTAAA+AGG - chr1_3:20534502-20534521 None:intergenic 15.0%
!!! TCTTTAAAAGATCAAATTAA+AGG + chr1_3:20534530-20534549 Msa0108870:intron 15.0%
!!! TGATAATATTCTTTAGAATT+TGG + chr1_3:20534881-20534900 Msa0108870:intron 15.0%
!!! TTATTTGTTTTTCATCAATT+GGG - chr1_3:20535449-20535468 None:intergenic 15.0%
!!! CTTTTTCTTATATATAAGAT+CGG - chr1_3:20535605-20535624 None:intergenic 15.0%
!!! TAAATAAAAGTTGATGTATA+TGG + chr1_3:20535630-20535649 Msa0108870:intron 15.0%
!!! TTATTTTGATTTCATGTAAA+AGG - chr1_3:20535995-20536014 None:intergenic 15.0%
!!! ATTGTTATTGTTATTATGTA+TGG + chr1_3:20536212-20536231 Msa0108870:three_prime_UTR 15.0%
!! TATATACATGTTAGATAATC+AGG + chr1_3:20527443-20527462 Msa0108870:five_prime_UTR 20.0%
!! CTGAAATTGATGAAAATAAA+GGG - chr1_3:20527637-20527656 None:intergenic 20.0%
!! ACTGAAATTGATGAAAATAA+AGG - chr1_3:20527638-20527657 None:intergenic 20.0%
!!! ATATATTTTTTAGTTGGTTG+TGG + chr1_3:20527862-20527881 Msa0108870:intron 20.0%
!!! TTATTCTGTTCATTGATAAT+GGG + chr1_3:20528354-20528373 Msa0108870:intron 20.0%
!!! GGTTTTATTCATTATTAAGA+TGG + chr1_3:20528375-20528394 Msa0108870:intron 20.0%
!! AACCAAATTTAAACAATATC+CGG - chr1_3:20528518-20528537 None:intergenic 20.0%
!! ATGAAGCAATAATTGATATT+TGG + chr1_3:20528769-20528788 Msa0108870:intron 20.0%
!! TGAAGCAATAATTGATATTT+GGG + chr1_3:20528770-20528789 Msa0108870:intron 20.0%
!!! GAAATCCTTTTAAAAATTAC+TGG - chr1_3:20529152-20529171 None:intergenic 20.0%
!! GCTACAGAATAATAATAATT+TGG + chr1_3:20529721-20529740 Msa0108870:CDS 20.0%
!!! CTTTACAAGTATATATTTTG+TGG + chr1_3:20530466-20530485 Msa0108870:intron 20.0%
!!! TTACAAGTATATATTTTGTG+GGG + chr1_3:20530468-20530487 Msa0108870:intron 20.0%
!!! TTTAGTTTTTTGTGAAATTG+AGG + chr1_3:20530695-20530714 Msa0108870:intron 20.0%
!!! TCATTTCTATCATTTTCAAA+TGG - chr1_3:20531018-20531037 None:intergenic 20.0%
!! AAAATTAACTGACAAAAACA+AGG + chr1_3:20531282-20531301 Msa0108870:intron 20.0%
!! TGATATTAGGAATAAACAAA+TGG - chr1_3:20531340-20531359 None:intergenic 20.0%
!! TTATTCCTAATATCATCATA+CGG + chr1_3:20531345-20531364 Msa0108870:intron 20.0%
!! TAAAAGGAAAAAAAATCTCA+AGG - chr1_3:20531528-20531547 None:intergenic 20.0%
!!! ACATTTCTTTTTCAATCTTT+GGG + chr1_3:20531837-20531856 Msa0108870:intron 20.0%
!!! AGCTTTTGGATTTTAATATA+TGG + chr1_3:20531927-20531946 Msa0108870:intron 20.0%
!!! GCTTTTGGATTTTAATATAT+GGG + chr1_3:20531928-20531947 Msa0108870:intron 20.0%
!! TTAAAAAGACAAACAAGTTT+GGG - chr1_3:20532192-20532211 None:intergenic 20.0%
!! ATTAAAAAGACAAACAAGTT+TGG - chr1_3:20532193-20532212 None:intergenic 20.0%
!!! TTTTGTTAAATCTTTTAGGT+TGG + chr1_3:20532542-20532561 Msa0108870:intron 20.0%
!!! AAAAAAATGTAAACTTGCTT+CGG + chr1_3:20532655-20532674 Msa0108870:intron 20.0%
!! TTAAAAGCAAATGAATACTA+TGG + chr1_3:20532905-20532924 Msa0108870:intron 20.0%
!!! AAGGTATTCCAAAATTAAAA+AGG - chr1_3:20533204-20533223 None:intergenic 20.0%
!! AGAATTATATAGAGAGAATT+AGG + chr1_3:20533237-20533256 Msa0108870:intron 20.0%
!! GAATTATATAGAGAGAATTA+GGG + chr1_3:20533238-20533257 Msa0108870:intron 20.0%
!! ATTTGAAAAATACACATTGA+AGG - chr1_3:20533601-20533620 None:intergenic 20.0%
!!! TTATATAAGATTTTACCAAG+AGG + chr1_3:20533622-20533641 Msa0108870:intron 20.0%
!!! TACACTTTGAAAATGAAATA+AGG - chr1_3:20533672-20533691 None:intergenic 20.0%
!! AATTATAACAATGAAGTGTA+TGG - chr1_3:20535118-20535137 None:intergenic 20.0%
!! TAAAGAAGATTTAAAAACTG+TGG + chr1_3:20535241-20535260 Msa0108870:CDS 20.0%
!!! TATTTGTTTTTCATCAATTG+GGG - chr1_3:20535448-20535467 None:intergenic 20.0%
!!! GTTATTTGTTTTTCATCAAT+TGG - chr1_3:20535450-20535469 None:intergenic 20.0%
!! TCAACAAAAGTTTATGTATT+CGG - chr1_3:20535669-20535688 None:intergenic 20.0%
!!! ACTATAGTATTGATTTTGAT+TGG + chr1_3:20535792-20535811 Msa0108870:intron 20.0%
!! ATACAAATACAATTATGCAA+GGG + chr1_3:20535945-20535964 Msa0108870:three_prime_UTR 20.0%
!!! TTTGTTTTATTTAAGTTCAG+CGG + chr1_3:20536027-20536046 Msa0108870:three_prime_UTR 20.0%
!! AATTGTTCATTTAACTAATC+TGG + chr1_3:20536064-20536083 Msa0108870:three_prime_UTR 20.0%
!! ATTGTTCATTTAACTAATCT+GGG + chr1_3:20536065-20536084 Msa0108870:three_prime_UTR 20.0%
! ATGATTAAGATTGGATTCAT+TGG + chr1_3:20527824-20527843 Msa0108870:intron 25.0%
! TTCAGTTATTGTATGTGATT+AGG + chr1_3:20527963-20527982 Msa0108870:intron 25.0%
! CTTATTCTGTTCATTGATAA+TGG + chr1_3:20528353-20528372 Msa0108870:intron 25.0%
!!! GGAAAGTTCATTTTTTTAGT+TGG + chr1_3:20528397-20528416 Msa0108870:intron 25.0%
!!! TTCATTTTTTTAGTTGGTTG+TGG + chr1_3:20528403-20528422 Msa0108870:intron 25.0%
!! ATGTTAGGGTTTTTAAATAG+CGG - chr1_3:20528715-20528734 None:intergenic 25.0%
! AGTTATTAGTACTAGTTACT+AGG - chr1_3:20529009-20529028 None:intergenic 25.0%
!! ATGGTCCAGTAATTTTTAAA+AGG + chr1_3:20529144-20529163 Msa0108870:CDS 25.0%
! AGTTCAAAATTTGCATCATT+AGG + chr1_3:20529413-20529432 Msa0108870:CDS 25.0%
! GGAAAATCTAGTAATAACAA+TGG + chr1_3:20529743-20529762 Msa0108870:CDS 25.0%
! AAATCTAGTAATAACAATGG+TGG + chr1_3:20529746-20529765 Msa0108870:CDS 25.0%
! ATGTTGGTATTAAACAAGAA+AGG + chr1_3:20529825-20529844 Msa0108870:CDS 25.0%
!! TTTGCCTTTTTCTTAAAAGA+TGG - chr1_3:20530115-20530134 None:intergenic 25.0%
!! ACAAATGTTTTCACTGTTTT+GGG + chr1_3:20530342-20530361 Msa0108870:intron 25.0%
! AAAATAAAACTCTTCGGATT+TGG - chr1_3:20530668-20530687 None:intergenic 25.0%
! TAAACTTAGTATGTATATGC+AGG + chr1_3:20530778-20530797 Msa0108870:intron 25.0%
!! CAAAATTCAAGGAAAACTTT+TGG + chr1_3:20530849-20530868 Msa0108870:CDS 25.0%
! AAATCATGTGATTCAGAATT+TGG + chr1_3:20530898-20530917 Msa0108870:CDS 25.0%
! TTAAGTTCGTAAATCTTACA+TGG + chr1_3:20531171-20531190 Msa0108870:intron 25.0%
! TAAGTTCGTAAATCTTACAT+GGG + chr1_3:20531172-20531191 Msa0108870:intron 25.0%
! TGGAAGGTTGTAAAATTAAA+AGG - chr1_3:20531544-20531563 None:intergenic 25.0%
! TTATGATGCACTTCATTATT+TGG - chr1_3:20531800-20531819 None:intergenic 25.0%
!!! GACATTTCTTTTTCAATCTT+TGG + chr1_3:20531836-20531855 Msa0108870:intron 25.0%
!! TAAACTTTATAAACTAGCCT+AGG - chr1_3:20531880-20531899 None:intergenic 25.0%
!! GCTAGTTTATAAAGTTTACA+TGG + chr1_3:20531882-20531901 Msa0108870:intron 25.0%
! AAAATCCAAAAGCTTCAAAA+GGG - chr1_3:20531921-20531940 None:intergenic 25.0%
! TAAAATCCAAAAGCTTCAAA+AGG - chr1_3:20531922-20531941 None:intergenic 25.0%
!! TTAATATATGGGATTTGTTC+CGG + chr1_3:20531939-20531958 Msa0108870:intron 25.0%
!!! TTGTTTTTATCAGGAGAAAA+AGG + chr1_3:20532068-20532087 Msa0108870:intron 25.0%
!! TCTTTTTAATGTTTGATCAG+CGG + chr1_3:20532203-20532222 Msa0108870:intron 25.0%
!!! AGAAGTTTCTTTTTAAGCAT+AGG + chr1_3:20532250-20532269 Msa0108870:intron 25.0%
!!! ACAATTTTTCCCTTTTGTTT+TGG + chr1_3:20532353-20532372 Msa0108870:intron 25.0%
! AGTTAACAGAAGAAAAGTTA+AGG - chr1_3:20532439-20532458 None:intergenic 25.0%
! ACATTTCAAATGTAAAAGCT+TGG - chr1_3:20532467-20532486 None:intergenic 25.0%
! ACAATTATCATAACAACCTT+GGG - chr1_3:20532617-20532636 None:intergenic 25.0%
! AACAATTATCATAACAACCT+TGG - chr1_3:20532618-20532637 None:intergenic 25.0%
! TTATTCAAATACGTGTTTCT+GGG + chr1_3:20533050-20533069 Msa0108870:CDS 25.0%
!!! TATTTGATTTGCAAAAGTCA+CGG - chr1_3:20533782-20533801 None:intergenic 25.0%
!! AGAATAAACCAATTTAAGAC+CGG - chr1_3:20533966-20533985 None:intergenic 25.0%
! TCTTAACTGCTAATACTTAA+AGG + chr1_3:20533983-20534002 Msa0108870:intron 25.0%
! CTTAACTGCTAATACTTAAA+GGG + chr1_3:20533984-20534003 Msa0108870:intron 25.0%
!! TAAACATTTTCTCACCTTTT+TGG - chr1_3:20534129-20534148 None:intergenic 25.0%
! TACATTAAATAGTCATCTGA+AGG + chr1_3:20534255-20534274 Msa0108870:CDS 25.0%
! ACTGTTGTCATATAATTCAA+GGG - chr1_3:20534609-20534628 None:intergenic 25.0%
! AACTGTTGTCATATAATTCA+AGG - chr1_3:20534610-20534629 None:intergenic 25.0%
! TATATGACAACAGTTGAATA+AGG + chr1_3:20534615-20534634 Msa0108870:intron 25.0%
! TTGAATAAGGATACTAAAGA+TGG + chr1_3:20534628-20534647 Msa0108870:CDS 25.0%
! AAAAGTTCTTGTCTATAATC+AGG + chr1_3:20534663-20534682 Msa0108870:CDS 25.0%
! TGAAAAGATTGATGAACTTA+AGG + chr1_3:20534858-20534877 Msa0108870:CDS 25.0%
!!! TCATTTTGTTTGAAATTCAG+AGG + chr1_3:20534938-20534957 Msa0108870:intron 25.0%
!!! CATTTTGTTTGAAATTCAGA+GGG + chr1_3:20534939-20534958 Msa0108870:intron 25.0%
! TTGTGATTTATGTAACATAC+AGG + chr1_3:20535156-20535175 Msa0108870:intron 25.0%
! ATACAGGATAAAGAAAAAGA+TGG + chr1_3:20535172-20535191 Msa0108870:intron 25.0%
!!! ATTTGTTTTTCATCAATTGG+GGG - chr1_3:20535447-20535466 None:intergenic 25.0%
! AAAACACATTAAAGCCTTTA+TGG - chr1_3:20535564-20535583 None:intergenic 25.0%
! TTTCTTATATATAAGATCGG+AGG - chr1_3:20535602-20535621 None:intergenic 25.0%
! TCAAACCAAAAACAACATTT+GGG - chr1_3:20535756-20535775 None:intergenic 25.0%
! TTCAAACCAAAAACAACATT+TGG - chr1_3:20535757-20535776 None:intergenic 25.0%
! TTTGTATGTCTTCATCTTAT+AGG - chr1_3:20535932-20535951 None:intergenic 25.0%
! CATACAAATACAATTATGCA+AGG + chr1_3:20535944-20535963 Msa0108870:three_prime_UTR 25.0%
! TTGTTCATTTAACTAATCTG+GGG + chr1_3:20536066-20536085 Msa0108870:three_prime_UTR 25.0%
! ATTATTTAACGTGATAACCA+TGG + chr1_3:20536138-20536157 Msa0108870:three_prime_UTR 25.0%
! TTGTGATTATGCTTTTGCTA+TGG - chr1_3:20527607-20527626 None:intergenic 30.0%
! ATAGCAAAAGCATAATCACA+AGG + chr1_3:20527606-20527625 Msa0108870:five_prime_UTR 30.0%
TCAAGAAGTAACAGACAAAA+GGG - chr1_3:20527663-20527682 None:intergenic 30.0%
ATCAAGAAGTAACAGACAAA+AGG - chr1_3:20527664-20527683 None:intergenic 30.0%
! TTTGTGTGGAATATGTGTTT+TGG + chr1_3:20527726-20527745 Msa0108870:intron 30.0%
ATGTTAAGCTTGCAATTCTT+TGG + chr1_3:20527892-20527911 Msa0108870:intron 30.0%
TGTATGTGATTAGGATGAAT+TGG + chr1_3:20527972-20527991 Msa0108870:intron 30.0%
GGAAAACAAATAGAGTTCTA+GGG - chr1_3:20528264-20528283 None:intergenic 30.0%
AGGAAAACAAATAGAGTTCT+AGG - chr1_3:20528265-20528284 None:intergenic 30.0%
!! GAACTCTATTTGTTTTCCTT+AGG + chr1_3:20528266-20528285 Msa0108870:intron 30.0%
GATGTTTCTTTCTTATTGAC+CGG + chr1_3:20528496-20528515 Msa0108870:intron 30.0%
GACCGGATATTGTTTAAATT+TGG + chr1_3:20528513-20528532 Msa0108870:intron 30.0%
TGGTTATTGCATATAGATTG+TGG + chr1_3:20528533-20528552 Msa0108870:intron 30.0%
! TGATATTTGGGTGTTCTTTT+TGG + chr1_3:20528782-20528801 Msa0108870:intron 30.0%
GGCTTGTGGTAAATTAAATA+TGG + chr1_3:20529100-20529119 Msa0108870:exon 30.0%
! AAATTTTGAACTTCCTGAAG+GGG - chr1_3:20529405-20529424 None:intergenic 30.0%
! CAAATTTTGAACTTCCTGAA+GGG - chr1_3:20529406-20529425 None:intergenic 30.0%
GACAATAATTCTAGCAAACA+TGG + chr1_3:20529494-20529513 Msa0108870:CDS 30.0%
TAATTCTAGCAAACATGGTA+AGG + chr1_3:20529499-20529518 Msa0108870:CDS 30.0%
TATATTATCCATCTCGTCTT+CGG - chr1_3:20529543-20529562 None:intergenic 30.0%
ATAATATACCATTGAGTGCT+AGG + chr1_3:20529555-20529574 Msa0108870:CDS 30.0%
GATTAATGCTAAACAGACAT+CGG + chr1_3:20529940-20529959 Msa0108870:CDS 30.0%
! TTATTCATTCTTTGGGAAAG+AGG - chr1_3:20530016-20530035 None:intergenic 30.0%
!! TGCTCCATCTTTTAAGAAAA+AGG + chr1_3:20530108-20530127 Msa0108870:CDS 30.0%
AAGGCAAATTTCAAAAAACC+AGG + chr1_3:20530127-20530146 Msa0108870:CDS 30.0%
! GACAAATGTTTTCACTGTTT+TGG + chr1_3:20530341-20530360 Msa0108870:intron 30.0%
! ACATTGGATGTTATTTGACT+TGG + chr1_3:20530411-20530430 Msa0108870:intron 30.0%
ACATTTCTTACCTTACATGT+TGG + chr1_3:20530616-20530635 Msa0108870:intron 30.0%
!! ACTTTACACCGATTTATGAT+TGG + chr1_3:20530930-20530949 Msa0108870:CDS 30.0%
ATTTGGCACCAATCATAAAT+CGG - chr1_3:20530941-20530960 None:intergenic 30.0%
! TCTTCTTCTCCTTTTCAATT+TGG - chr1_3:20530958-20530977 None:intergenic 30.0%
! GAATATCTCAAAGCATCATT+TGG + chr1_3:20531036-20531055 Msa0108870:intron 30.0%
!!! AGCATCATTTGGTTTTTACA+TGG + chr1_3:20531047-20531066 Msa0108870:intron 30.0%
AAACAACTAACATCTGCATA+TGG - chr1_3:20531094-20531113 None:intergenic 30.0%
TTGAGAATTAACTTTGCGTT+TGG + chr1_3:20531113-20531132 Msa0108870:intron 30.0%
TAAACTCTGTATGAGATACA+TGG - chr1_3:20531647-20531666 None:intergenic 30.0%
!!! TTCTTTTTCAATCTTTGGGA+AGG + chr1_3:20531841-20531860 Msa0108870:intron 30.0%
ATGTATATGCCTGTATTAAC+CGG - chr1_3:20531961-20531980 None:intergenic 30.0%
CTAAGAAAAAGCTTCACAAA+AGG - chr1_3:20532001-20532020 None:intergenic 30.0%
CTGATAAAAACAAGAGAAGA+GGG - chr1_3:20532061-20532080 None:intergenic 30.0%
! TTTCATTTTCTCCTCCTTTA+GGG - chr1_3:20532094-20532113 None:intergenic 30.0%
!! GTTTCTTTTTAAGCATAGGT+AGG + chr1_3:20532254-20532273 Msa0108870:intron 30.0%
AGTAATTGACAATTCCTTCT+TGG + chr1_3:20532284-20532303 Msa0108870:intron 30.0%
GTAATTGACAATTCCTTCTT+GGG + chr1_3:20532285-20532304 Msa0108870:intron 30.0%
!!! TTTTTCCCTTTTGTTTTGGT+TGG + chr1_3:20532357-20532376 Msa0108870:intron 30.0%
! TAAACTTGCTTCGGATATAA+TGG + chr1_3:20532664-20532683 Msa0108870:intron 30.0%
ATATTAATTACGACGTCACT+TGG - chr1_3:20532804-20532823 None:intergenic 30.0%
AGTGACGTCGTAATTAATAT+TGG + chr1_3:20532804-20532823 Msa0108870:CDS 30.0%
ACGTCGTAATTAATATTGGA+AGG + chr1_3:20532808-20532827 Msa0108870:CDS 30.0%
CGTCGTAATTAATATTGGAA+GGG + chr1_3:20532809-20532828 Msa0108870:CDS 30.0%
TTTACTGTTCCATAACTTCT+TGG + chr1_3:20532872-20532891 Msa0108870:intron 30.0%
GACATGATAATACAGTTACT+TGG + chr1_3:20532994-20533013 Msa0108870:CDS 30.0%
TGATAATACAGTTACTTGGT+TGG + chr1_3:20532998-20533017 Msa0108870:CDS 30.0%
GTTATTCAAATACGTGTTTC+TGG + chr1_3:20533049-20533068 Msa0108870:CDS 30.0%
!!! TTTTGGAATACCTTAACATC+TGG + chr1_3:20533210-20533229 Msa0108870:intron 30.0%
! TTTGGAATACCTTAACATCT+GGG + chr1_3:20533211-20533230 Msa0108870:intron 30.0%
TTATATAGAGAGAATTAGGG+CGG + chr1_3:20533241-20533260 Msa0108870:CDS 30.0%
!! TTATTGACAAACTAGCTTTG+AGG + chr1_3:20533327-20533346 Msa0108870:CDS 30.0%
!! TATTGACAAACTAGCTTTGA+GGG + chr1_3:20533328-20533347 Msa0108870:CDS 30.0%
TCTATATGTTATCTAGGGAA+GGG - chr1_3:20533409-20533428 None:intergenic 30.0%
ATCTATATGTTATCTAGGGA+AGG - chr1_3:20533410-20533429 None:intergenic 30.0%
GCACATCTATATGTTATCTA+GGG - chr1_3:20533414-20533433 None:intergenic 30.0%
AGCACATCTATATGTTATCT+AGG - chr1_3:20533415-20533434 None:intergenic 30.0%
ACATATAGATGTGCTAAAAG+AGG + chr1_3:20533420-20533439 Msa0108870:intron 30.0%
GTCAAAGTATGCTAAATACT+TGG + chr1_3:20533499-20533518 Msa0108870:intron 30.0%
AAGTATGCTAAATACTTGGA+AGG + chr1_3:20533503-20533522 Msa0108870:intron 30.0%
CATAAATAATTGCCATGAGA+TGG - chr1_3:20533701-20533720 None:intergenic 30.0%
ATAAAACGCAATGAAGAGAT+AGG - chr1_3:20533746-20533765 None:intergenic 30.0%
CTTATGATTTACATTTGCTC+AGG + chr1_3:20533808-20533827 Msa0108870:intron 30.0%
TTCAAAATGGCATTGTAAAC+AGG - chr1_3:20534103-20534122 None:intergenic 30.0%
!!! ACCTTTTTGGAACTTCAAAA+TGG - chr1_3:20534116-20534135 None:intergenic 30.0%
ATATATTGCCTATTAGACTG+AGG + chr1_3:20534158-20534177 Msa0108870:intron 30.0%
!! ATCTGCTTTTCTCAATTATC+AGG + chr1_3:20534190-20534209 Msa0108870:intron 30.0%
TGAATGATGCATTGAATGTA+CGG - chr1_3:20534312-20534331 None:intergenic 30.0%
ATTCAATGCATCATTCACTT+TGG + chr1_3:20534315-20534334 Msa0108870:CDS 30.0%
ATCATTCACTTTGGATGATA+TGG + chr1_3:20534324-20534343 Msa0108870:CDS 30.0%
AATCCCTTTCTCATTTGATT+AGG + chr1_3:20534437-20534456 Msa0108870:intron 30.0%
TCTCCTAATCAAATGAGAAA+GGG - chr1_3:20534443-20534462 None:intergenic 30.0%
! CAGATTGTTGTGTATTTTAC+TGG + chr1_3:20534730-20534749 Msa0108870:intron 30.0%
!! TCTTTAGAATTTGGAAACCA+TGG + chr1_3:20534890-20534909 Msa0108870:intron 30.0%
! CATTTTCTTAATTTTTGCGC+TGG - chr1_3:20535204-20535223 None:intergenic 30.0%
CAGCGCAAAAATTAAGAAAA+TGG + chr1_3:20535202-20535221 Msa0108870:CDS 30.0%
AATAACAGTCAAGCTTCTAT+TGG + chr1_3:20535464-20535483 Msa0108870:intron 30.0%
TAAGCAAGATCATACAAACA+AGG - chr1_3:20535496-20535515 None:intergenic 30.0%
!! GTATGATCTTGCTTATTTTC+CGG + chr1_3:20535501-20535520 Msa0108870:intron 30.0%
! ATTACTAGTCTGATTCTGAT+GGG - chr1_3:20535541-20535560 None:intergenic 30.0%
ATCAGACTAGTAATCCATAA+AGG + chr1_3:20535547-20535566 Msa0108870:intron 30.0%
! GATGTATATGGTCTAAAACT+TGG + chr1_3:20535642-20535661 Msa0108870:intron 30.0%
AAACCAAAAACAACATTTGG+GGG - chr1_3:20535754-20535773 None:intergenic 30.0%
CAAACCAAAAACAACATTTG+GGG - chr1_3:20535755-20535774 None:intergenic 30.0%
!! TGACTAACATACTCTTGTTT+TGG + chr1_3:20535819-20535838 Msa0108870:intron 30.0%
!!! GACTAACATACTCTTGTTTT+GGG + chr1_3:20535820-20535839 Msa0108870:intron 30.0%
TCATTATCCACATTTAACCA+TGG - chr1_3:20536158-20536177 None:intergenic 30.0%
ATGGTTAAATGTGGATAATG+AGG + chr1_3:20536157-20536176 Msa0108870:three_prime_UTR 30.0%
ATGTTAGATAATCAGGTCAC+CGG + chr1_3:20527450-20527469 Msa0108870:five_prime_UTR 35.0%
CAGATGATTTGATGAAGTTC+AGG - chr1_3:20527479-20527498 None:intergenic 35.0%
!!! TCTTGGTTTTGTTGTTTGTG+TGG + chr1_3:20527712-20527731 Msa0108870:intron 35.0%
GACAGGAGATAAGTAAAATC+CGG - chr1_3:20528068-20528087 None:intergenic 35.0%
ACATAAACCACAAACACAGA+AGG - chr1_3:20528163-20528182 None:intergenic 35.0%
! CTTATGCAGTTTCATTTTGC+TGG + chr1_3:20528204-20528223 Msa0108870:intron 35.0%
!! TCCTTAGGCATTTTAGCATT+TGG + chr1_3:20528281-20528300 Msa0108870:intron 35.0%
!! CCTTAGGCATTTTAGCATTT+GGG + chr1_3:20528282-20528301 Msa0108870:intron 35.0%
!! CTTAGGCATTTTAGCATTTG+GGG + chr1_3:20528283-20528302 Msa0108870:intron 35.0%
TTTGGGGATGTTGTTAATCA+CGG + chr1_3:20528299-20528318 Msa0108870:intron 35.0%
ATGTTGTTAATCACGGATAG+TGG + chr1_3:20528306-20528325 Msa0108870:intron 35.0%
!! AATCACGGATAGTGGAAAAA+AGG + chr1_3:20528314-20528333 Msa0108870:intron 35.0%
!! ATCACGGATAGTGGAAAAAA+GGG + chr1_3:20528315-20528334 Msa0108870:intron 35.0%
TTAATGTAAGCCCTAGCATT+TGG + chr1_3:20528621-20528640 Msa0108870:intron 35.0%
!! CACGAATTTGATGATGAAGA+TGG + chr1_3:20529125-20529144 Msa0108870:CDS 35.0%
CTCAATTGCATTCAGAAACA+AGG + chr1_3:20529186-20529205 Msa0108870:CDS 35.0%
CAAATCTCAAAACCTATGTG+AGG + chr1_3:20529378-20529397 Msa0108870:CDS 35.0%
! GCAAATTTTGAACTTCCTGA+AGG - chr1_3:20529407-20529426 None:intergenic 35.0%
TCCTTAACATGAACATGAAC+GGG - chr1_3:20529473-20529492 None:intergenic 35.0%
CTCCTTAACATGAACATGAA+CGG - chr1_3:20529474-20529493 None:intergenic 35.0%
!!! GACAACAGGAGTTGTTTTTT+TGG - chr1_3:20529603-20529622 None:intergenic 35.0%
!! TGAGATTTGTTGACAACAAC+AGG - chr1_3:20529662-20529681 None:intergenic 35.0%
ATGATATTCCTTTGTCAGCA+AGG + chr1_3:20529696-20529715 Msa0108870:CDS 35.0%
CCTTTCTGAACATTTGAAAG+TGG - chr1_3:20529788-20529807 None:intergenic 35.0%
CCACTTTCAAATGTTCAGAA+AGG + chr1_3:20529785-20529804 Msa0108870:CDS 35.0%
TTATCTAGTGGTCTCTTAAC+AGG - chr1_3:20529863-20529882 None:intergenic 35.0%
TTTCTTAACAGAAGAATGCG+AGG - chr1_3:20529894-20529913 None:intergenic 35.0%
GTCTGTTTAGCATTAATCGA+TGG - chr1_3:20529938-20529957 None:intergenic 35.0%
GGCATGCTTATTCATTCTTT+GGG - chr1_3:20530023-20530042 None:intergenic 35.0%
TGGCATGCTTATTCATTCTT+TGG - chr1_3:20530024-20530043 None:intergenic 35.0%
AGATGATTTAGTCACTGATG+TGG - chr1_3:20530044-20530063 None:intergenic 35.0%
AACTGTTCTGATTTATTGCC+TGG - chr1_3:20530148-20530167 None:intergenic 35.0%
!! GCAGAAAAAATGGACTACTT+TGG + chr1_3:20530204-20530223 Msa0108870:CDS 35.0%
! CGTTTTTGTGAGTTTCACAT+TGG + chr1_3:20530395-20530414 Msa0108870:intron 35.0%
!! ACTTGGAAAAAGTGTTCACA+AGG + chr1_3:20530428-20530447 Msa0108870:intron 35.0%
!! CTTGGAAAAAGTGTTCACAA+GGG + chr1_3:20530429-20530448 Msa0108870:intron 35.0%
!! TTGGAAAAAGTGTTCACAAG+GGG + chr1_3:20530430-20530449 Msa0108870:intron 35.0%
! ATATTTTGTGGGGTTGAGTT+TGG + chr1_3:20530478-20530497 Msa0108870:intron 35.0%
!!! TACCTTACATGTTGGTTTTG+TGG + chr1_3:20530624-20530643 Msa0108870:intron 35.0%
!!! ACCTTACATGTTGGTTTTGT+GGG + chr1_3:20530625-20530644 Msa0108870:intron 35.0%
AAACTCTTCGGATTTGGATA+GGG - chr1_3:20530662-20530681 None:intergenic 35.0%
AAAACTCTTCGGATTTGGAT+AGG - chr1_3:20530663-20530682 None:intergenic 35.0%
GGATACAGAATACATGCAAA+AGG + chr1_3:20530826-20530845 Msa0108870:CDS 35.0%
CATGCAAAAGGCAAAATTCA+AGG + chr1_3:20530838-20530857 Msa0108870:CDS 35.0%
!! TGATTGGTGCCAAATTGAAA+AGG + chr1_3:20530946-20530965 Msa0108870:CDS 35.0%
GAATTAACTTTGCGTTTGGT+TGG + chr1_3:20531117-20531136 Msa0108870:intron 35.0%
AACTTAACGACGCTATGATT+TGG - chr1_3:20531158-20531177 None:intergenic 35.0%
TCGTAAATCTTACATGGGAT+TGG + chr1_3:20531177-20531196 Msa0108870:intron 35.0%
ATCTTACATGGGATTGGATA+AGG + chr1_3:20531183-20531202 Msa0108870:intron 35.0%
GTATGCCGTATGATGATATT+AGG - chr1_3:20531353-20531372 None:intergenic 35.0%
GTGGGAAAACGATATTGTAA+GGG - chr1_3:20531375-20531394 None:intergenic 35.0%
AGTGGGAAAACGATATTGTA+AGG - chr1_3:20531376-20531395 None:intergenic 35.0%
AAAGATTGTCTTCCAGAAGT+GGG - chr1_3:20531393-20531412 None:intergenic 35.0%
AAATTAACCCTTGTCTGTTC+TGG - chr1_3:20531564-20531583 None:intergenic 35.0%
! GAACAGACAAGGGTTAATTT+TGG + chr1_3:20531564-20531583 Msa0108870:intron 35.0%
!! AGACAAGGGTTAATTTTGGT+AGG + chr1_3:20531568-20531587 Msa0108870:intron 35.0%
AACTCAGAACTCGTTATGTT+GGG - chr1_3:20531696-20531715 None:intergenic 35.0%
!! AACATAACGAGTTCTGAGTT+GGG + chr1_3:20531696-20531715 Msa0108870:intron 35.0%
!! AAGGAAGTTGATATGAACCT+AGG + chr1_3:20531860-20531879 Msa0108870:intron 35.0%
!!! ATACTCCCTTTTGAAGCTTT+TGG + chr1_3:20531913-20531932 Msa0108870:intron 35.0%
CCTGATAAAAACAAGAGAAG+AGG - chr1_3:20532062-20532081 None:intergenic 35.0%
!!! CCTCTTCTCTTGTTTTTATC+AGG + chr1_3:20532059-20532078 Msa0108870:intron 35.0%
! GTTTCATTTTCTCCTCCTTT+AGG - chr1_3:20532095-20532114 None:intergenic 35.0%
AACAAGAGGAGAAATACATG+TGG + chr1_3:20532112-20532131 Msa0108870:CDS 35.0%
ACAAGAGGAGAAATACATGT+GGG + chr1_3:20532113-20532132 Msa0108870:CDS 35.0%
!! TGTTGATGGTGTTAAAGAGA+AGG + chr1_3:20532140-20532159 Msa0108870:CDS 35.0%
CTGATCCAACCAAAACAAAA+GGG - chr1_3:20532365-20532384 None:intergenic 35.0%
ATCAGCTTCTTGTGCATTAA+TGG + chr1_3:20532380-20532399 Msa0108870:intron 35.0%
TGCATTAATGGAACTTGAGT+GGG + chr1_3:20532392-20532411 Msa0108870:intron 35.0%
GGAAAATTGAAAAGACGCAT+TGG + chr1_3:20532777-20532796 Msa0108870:CDS 35.0%
AAATACCTTTCACCAGGAAT+AGG - chr1_3:20532855-20532874 None:intergenic 35.0%
AACAGTAAATACCTTTCACC+AGG - chr1_3:20532861-20532880 None:intergenic 35.0%
ACTTGTTCACCAAGAAGTTA+TGG - chr1_3:20532884-20532903 None:intergenic 35.0%
!! ATCATTGATTTGTGTGCTCT+TGG + chr1_3:20532954-20532973 Msa0108870:intron 35.0%
! AGGAAAAGTATGAGAAAGCA+AGG + chr1_3:20533105-20533124 Msa0108870:CDS 35.0%
! GGAAAAGTATGAGAAAGCAA+GGG + chr1_3:20533106-20533125 Msa0108870:CDS 35.0%
TATATGTTATCTAGGGAAGG+GGG - chr1_3:20533407-20533426 None:intergenic 35.0%
CTATATGTTATCTAGGGAAG+GGG - chr1_3:20533408-20533427 None:intergenic 35.0%
TATGCTAAATACTTGGAAGG+TGG + chr1_3:20533506-20533525 Msa0108870:intron 35.0%
!! CTTCATTGCGTTTTATTGTC+TGG + chr1_3:20533750-20533769 Msa0108870:intron 35.0%
! ATAAACCAATTTAAGACCGG+AGG - chr1_3:20533963-20533982 None:intergenic 35.0%
ATTAAACCAGCAAGGAATCA+CGG - chr1_3:20534019-20534038 None:intergenic 35.0%
! TTAATGCAGTTTGACTTCCT+TGG + chr1_3:20534034-20534053 Msa0108870:intron 35.0%
TCCTTGGTAAAGATTCTATC+AGG + chr1_3:20534050-20534069 Msa0108870:CDS 35.0%
ACCTGATAGAATCTTTACCA+AGG - chr1_3:20534054-20534073 None:intergenic 35.0%
CAGGTATGAAAATACAGTTG+AGG + chr1_3:20534069-20534088 Msa0108870:CDS 35.0%
GTATGAAAATACAGTTGAGG+TGG + chr1_3:20534072-20534091 Msa0108870:CDS 35.0%
AAAATGGCATTGTAAACAGG+AGG - chr1_3:20534100-20534119 None:intergenic 35.0%
!!! GCCATTTTGAAGTTCCAAAA+AGG + chr1_3:20534112-20534131 Msa0108870:CDS 35.0%
TGTCTGAGCACTAATTTCAA+AGG - chr1_3:20534359-20534378 None:intergenic 35.0%
CTCTCCTAATCAAATGAGAA+AGG - chr1_3:20534444-20534463 None:intergenic 35.0%
CTATAATCAGGCAAACAAAC+AGG + chr1_3:20534675-20534694 Msa0108870:CDS 35.0%
CAATCTGTGCACATTAACAA+AGG - chr1_3:20534717-20534736 None:intergenic 35.0%
! TGATGTGTCTTTTCCATAAC+AGG + chr1_3:20534768-20534787 Msa0108870:intron 35.0%
CAAATGATTGCAACCTGTTA+TGG - chr1_3:20534784-20534803 None:intergenic 35.0%
TGAGAAATTTATCCACACCA+TGG - chr1_3:20534910-20534929 None:intergenic 35.0%
GTGGATAAATTTCTCATCAC+TGG + chr1_3:20534914-20534933 Msa0108870:intron 35.0%
TGCTGACACTTTGTAATTGT+AGG + chr1_3:20534981-20535000 Msa0108870:intron 35.0%
AAAGCTGTATATTACGCTTC+AGG - chr1_3:20535087-20535106 None:intergenic 35.0%
TCACAATCACACATTACACT+TGG - chr1_3:20535142-20535161 None:intergenic 35.0%
GATTTAAAAACTGTGGCACT+TGG + chr1_3:20535248-20535267 Msa0108870:CDS 35.0%
! GATTACTAGTCTGATTCTGA+TGG - chr1_3:20535542-20535561 None:intergenic 35.0%
TTACGTATATATAGAACCCG+AGG + chr1_3:20535697-20535716 Msa0108870:intron 35.0%
TACGTATATATAGAACCCGA+GGG + chr1_3:20535698-20535717 Msa0108870:intron 35.0%
! GATTTTCAGTAAAACACTGC+TGG + chr1_3:20535857-20535876 Msa0108870:intron 35.0%
TTTGACAGTCCATGAAGAAA+GGG - chr1_3:20536107-20536126 None:intergenic 35.0%
GTGATAACCATGGTTAAATG+TGG + chr1_3:20536148-20536167 Msa0108870:three_prime_UTR 35.0%
!! TTTGATGAAGTTCAGGTTGC+CGG - chr1_3:20527472-20527491 None:intergenic 40.0%
GATGAAGATGAAGATGAGTG+AGG - chr1_3:20527579-20527598 None:intergenic 40.0%
TCCCCATAGGAAGATTTGAT+CGG + chr1_3:20528004-20528023 Msa0108870:intron 40.0%
TCCCGATCAAATCTTCCTAT+GGG - chr1_3:20528009-20528028 None:intergenic 40.0%
TTCCCGATCAAATCTTCCTA+TGG - chr1_3:20528010-20528029 None:intergenic 40.0%
GAAAACCCTAGTTCGATTCT+GGG + chr1_3:20528027-20528046 Msa0108870:intron 40.0%
ATTCTGGGTGGAACAATTCT+TGG + chr1_3:20528042-20528061 Msa0108870:intron 40.0%
TGATAATCCAGAGTTTGGAC+AGG - chr1_3:20528085-20528104 None:intergenic 40.0%
TGTCCAAACTCTGGATTATC+AGG + chr1_3:20528084-20528103 Msa0108870:intron 40.0%
GTCCAAACTCTGGATTATCA+GGG + chr1_3:20528085-20528104 Msa0108870:intron 40.0%
TCCAAACTCTGGATTATCAG+GGG + chr1_3:20528086-20528105 Msa0108870:intron 40.0%
CACAAACACAGAAGGAAGAT+TGG - chr1_3:20528155-20528174 None:intergenic 40.0%
CAATCTTCCTTCTGTGTTTG+TGG + chr1_3:20528153-20528172 Msa0108870:intron 40.0%
CCCAAATGCTAAAATGCCTA+AGG - chr1_3:20528285-20528304 None:intergenic 40.0%
GACAGAGCATGTGTATAAGT+CGG - chr1_3:20528470-20528489 None:intergenic 40.0%
AACAACACCACCAAATGCTA+GGG - chr1_3:20528634-20528653 None:intergenic 40.0%
!! TTTGGTGGTGTTGTTGATTG+TGG + chr1_3:20528639-20528658 Msa0108870:intron 40.0%
! GTGTTGTTGATTGTGGATAG+TGG + chr1_3:20528646-20528665 Msa0108870:intron 40.0%
!! TTGTGGATAGTGGAAAACAG+AGG + chr1_3:20528656-20528675 Msa0108870:intron 40.0%
CCGAATCAGACGAAATGTTA+GGG - chr1_3:20528729-20528748 None:intergenic 40.0%
CCCTAACATTTCGTCTGATT+CGG + chr1_3:20528726-20528745 Msa0108870:intron 40.0%
ACCGAATCAGACGAAATGTT+AGG - chr1_3:20528730-20528749 None:intergenic 40.0%
!!! TGGGTGTTCTTTTTGGTTCA+TGG + chr1_3:20528789-20528808 Msa0108870:intron 40.0%
!!! GGGTGTTCTTTTTGGTTCAT+GGG + chr1_3:20528790-20528809 Msa0108870:intron 40.0%
!!! GGTGTTCTTTTTGGTTCATG+GGG + chr1_3:20528791-20528810 Msa0108870:intron 40.0%
CCACAGCTATTTGTCAACTA+TGG - chr1_3:20529079-20529098 None:intergenic 40.0%
CCATAGTTGACAAATAGCTG+TGG + chr1_3:20529076-20529095 Msa0108870:five_prime_UTR 40.0%
TAGTTGACAAATAGCTGTGG+AGG + chr1_3:20529079-20529098 Msa0108870:five_prime_UTR 40.0%
TCAACTTCTCATAGTCACGA+TGG + chr1_3:20529212-20529231 Msa0108870:CDS 40.0%
!! CAAAGTTCTAGCTCACAGAA+CGG + chr1_3:20529278-20529297 Msa0108870:CDS 40.0%
TATACCCACAGAAGATTCCA+CGG - chr1_3:20529339-20529358 None:intergenic 40.0%
TCCCGTTCATGTTCATGTTA+AGG + chr1_3:20529469-20529488 Msa0108870:CDS 40.0%
CGTTCATGTTCATGTTAAGG+AGG + chr1_3:20529472-20529491 Msa0108870:CDS 40.0%
ATCTTCATCCTAGCACTCAA+TGG - chr1_3:20529566-20529585 None:intergenic 40.0%
AGGATGAAGATGAACAGTGA+CGG + chr1_3:20529575-20529594 Msa0108870:CDS 40.0%
TGAGATTTCTTGACGACAAC+AGG - chr1_3:20529617-20529636 None:intergenic 40.0%
ATATTCCTTTGTCAGCAAGG+CGG + chr1_3:20529699-20529718 Msa0108870:CDS 40.0%
GTTCAGAAAGGACAGCAATA+TGG + chr1_3:20529797-20529816 Msa0108870:CDS 40.0%
!! CAGCAATATGGCTCTAATGT+TGG + chr1_3:20529809-20529828 Msa0108870:CDS 40.0%
! GAGGAATCAGTCTTATCTAG+TGG - chr1_3:20529875-20529894 None:intergenic 40.0%
TTAGCATTAATCGATGGAGC+TGG - chr1_3:20529932-20529951 None:intergenic 40.0%
! TGGACTACTTTGGTTCACAA+TGG + chr1_3:20530214-20530233 Msa0108870:CDS 40.0%
! ATAGAGCATCTTTACCCCAT+GGG - chr1_3:20530266-20530285 None:intergenic 40.0%
! TATAGAGCATCTTTACCCCA+TGG - chr1_3:20530267-20530286 None:intergenic 40.0%
TGGGGTAAAGATGCTCTATA+AGG + chr1_3:20530267-20530286 Msa0108870:CDS 40.0%
GGGGTAAAGATGCTCTATAA+GGG + chr1_3:20530268-20530287 Msa0108870:CDS 40.0%
GGGTAAAGATGCTCTATAAG+GGG + chr1_3:20530269-20530288 Msa0108870:CDS 40.0%
!! TGGAAAAAGTGTTCACAAGG+GGG + chr1_3:20530431-20530450 Msa0108870:intron 40.0%
ACATTCATGATGTCCAGTCA+TGG + chr1_3:20530514-20530533 Msa0108870:intron 40.0%
CATTCATGATGTCCAGTCAT+GGG + chr1_3:20530515-20530534 Msa0108870:intron 40.0%
!!! CCTTACATGTTGGTTTTGTG+GGG + chr1_3:20530626-20530645 Msa0108870:intron 40.0%
GCAGGTTGCAACATTATATG+CGG + chr1_3:20530796-20530815 Msa0108870:intron 40.0%
CAACATTATATGCGGTCATG+CGG + chr1_3:20530804-20530823 Msa0108870:CDS 40.0%
AACATTATATGCGGTCATGC+GGG + chr1_3:20530805-20530824 Msa0108870:CDS 40.0%
! AGGAAAACTTTTGGACTGAC+TGG + chr1_3:20530858-20530877 Msa0108870:CDS 40.0%
! AAACTTTTGGACTGACTGGA+AGG + chr1_3:20530862-20530881 Msa0108870:CDS 40.0%
ACTGACTGGAAGGTGATATT+GGG + chr1_3:20530872-20530891 Msa0108870:CDS 40.0%
AGCCATGTAAAACGTGTGAT+AGG + chr1_3:20531212-20531231 Msa0108870:intron 40.0%
! TGCCTATCACACGTTTTACA+TGG - chr1_3:20531217-20531236 None:intergenic 40.0%
! CAATATCGTTTTCCCACTTC+TGG + chr1_3:20531378-20531397 Msa0108870:intron 40.0%
GAAAGATTGTCTTCCAGAAG+TGG - chr1_3:20531394-20531413 None:intergenic 40.0%
ACAGGACAAGCAAGTTCTTT+CGG - chr1_3:20531417-20531436 None:intergenic 40.0%
ATCATACTCCAGTGCAAACT+CGG - chr1_3:20531600-20531619 None:intergenic 40.0%
AGTTTGCACTGGAGTATGAT+TGG + chr1_3:20531600-20531619 Msa0108870:intron 40.0%
CACTGGAGTATGATTGGATT+TGG + chr1_3:20531606-20531625 Msa0108870:intron 40.0%
GACTGGTAAAATTGCAAGCT+TGG - chr1_3:20531674-20531693 None:intergenic 40.0%
CAACTCAGAACTCGTTATGT+TGG - chr1_3:20531697-20531716 None:intergenic 40.0%
!! CAACATAACGAGTTCTGAGT+TGG + chr1_3:20531695-20531714 Msa0108870:intron 40.0%
! AAGCTTCAAAAGGGAGTATG+AGG - chr1_3:20531912-20531931 None:intergenic 40.0%
! GGATTTGTTCCGGTTAATAC+AGG + chr1_3:20531949-20531968 Msa0108870:intron 40.0%
GGAGGAGAAAATGAAACAAG+AGG + chr1_3:20532098-20532117 Msa0108870:CDS 40.0%
! TACATGTGGGCTATTGTTGA+TGG + chr1_3:20532126-20532145 Msa0108870:CDS 40.0%
CAAGTTTGGGCAAAGAAAGA+GGG - chr1_3:20532179-20532198 None:intergenic 40.0%
ACAAGTTTGGGCAAAGAAAG+AGG - chr1_3:20532180-20532199 None:intergenic 40.0%
TTGACAATTCCTTCTTGGGA+AGG + chr1_3:20532289-20532308 Msa0108870:intron 40.0%
TGACAATTCCTTCTTGGGAA+GGG + chr1_3:20532290-20532309 Msa0108870:intron 40.0%
GCTGATCCAACCAAAACAAA+AGG - chr1_3:20532366-20532385 None:intergenic 40.0%
GTGCATTAATGGAACTTGAG+TGG + chr1_3:20532391-20532410 Msa0108870:intron 40.0%
!!! AATTTTAGAGCTGAACCACC+AGG + chr1_3:20532566-20532585 Msa0108870:CDS 40.0%
GGAATAGGACATTCAGGAAT+TGG - chr1_3:20532840-20532859 None:intergenic 40.0%
ATTCCTGAATGTCCTATTCC+TGG + chr1_3:20532840-20532859 Msa0108870:CDS 40.0%
AATGTCCTATTCCTGGTGAA+AGG + chr1_3:20532847-20532866 Msa0108870:CDS 40.0%
AATTCTGCACCCAGATGTTA+AGG - chr1_3:20533223-20533242 None:intergenic 40.0%
! CACACTGTTTTCAATCCTCT+TGG - chr1_3:20533640-20533659 None:intergenic 40.0%
AGTGTAACAGTTCCATCTCA+TGG + chr1_3:20533686-20533705 Msa0108870:intron 40.0%
! AGATAGGAAAGGCATATGCT+TGG - chr1_3:20533730-20533749 None:intergenic 40.0%
ACGCAATGAAGAGATAGGAA+AGG - chr1_3:20533741-20533760 None:intergenic 40.0%
GTAGAAAATGTGACTGCAGA+AGG + chr1_3:20533875-20533894 Msa0108870:CDS 40.0%
! AGAAGGTGACAACAAGTTGA+AGG + chr1_3:20533892-20533911 Msa0108870:CDS 40.0%
! TTGTTTGTCCTTTTTGCCTC+CGG + chr1_3:20533944-20533963 Msa0108870:intron 40.0%
! ATTTAAGACCGGAGGCAAAA+AGG - chr1_3:20533955-20533974 None:intergenic 40.0%
! TTTTGCCTCCGGTCTTAAAT+TGG + chr1_3:20533955-20533974 Msa0108870:intron 40.0%
CAAACTGCATTAAACCAGCA+AGG - chr1_3:20534027-20534046 None:intergenic 40.0%
CTTAACGACCTCAGTCTAAT+AGG - chr1_3:20534169-20534188 None:intergenic 40.0%
ATCAGGTAAAAAACCTAGCG+AGG + chr1_3:20534207-20534226 Msa0108870:intron 40.0%
TTGTCAAAAAGTTCCTCGCT+AGG - chr1_3:20534223-20534242 None:intergenic 40.0%
!! AAGACTTTTGCTGTCAGGTT+GGG - chr1_3:20534289-20534308 None:intergenic 40.0%
!! CGTGCTGTTTCAAAATCTCA+CGG + chr1_3:20534814-20534833 Msa0108870:CDS 40.0%
AGAATTTGGAAACCATGGTG+TGG + chr1_3:20534895-20534914 Msa0108870:intron 40.0%
GTAATTGTAGGCTCTTTCGA+AGG + chr1_3:20534993-20535012 Msa0108870:intron 40.0%
AGCTGAAAACAGATTACGAC+AGG + chr1_3:20535016-20535035 Msa0108870:CDS 40.0%
GCTGAAAACAGATTACGACA+GGG + chr1_3:20535017-20535036 Msa0108870:CDS 40.0%
GATTACGACAGGGCAAAAAA+AGG + chr1_3:20535027-20535046 Msa0108870:CDS 40.0%
! AAGTTCCGTTTGGTCTTTAG+AGG - chr1_3:20535060-20535079 None:intergenic 40.0%
TCTAAAGACCAAACGGAACT+TGG + chr1_3:20535059-20535078 Msa0108870:CDS 40.0%
GGGATCTAGGTAGTTTATCT+TGG - chr1_3:20535279-20535298 None:intergenic 40.0%
AGATAAACTACCTAGATCCC+AGG + chr1_3:20535279-20535298 Msa0108870:CDS 40.0%
AGGTTCCTATTGAAAAGGTC+TGG + chr1_3:20535330-20535349 Msa0108870:intron 40.0%
! GAAGTCCAGACCTTTTCAAT+AGG - chr1_3:20535338-20535357 None:intergenic 40.0%
!! TTGCTTATTTTCCGGAAGCT+AGG + chr1_3:20535509-20535528 Msa0108870:intron 40.0%
GGTATATGTTATACTCCCTC+GGG - chr1_3:20535716-20535735 None:intergenic 40.0%
CGGTATATGTTATACTCCCT+CGG - chr1_3:20535717-20535736 None:intergenic 40.0%
TGGGGGACTACATCAAAAAA+CGG - chr1_3:20535737-20535756 None:intergenic 40.0%
!!! AGTCCCCCAAATGTTGTTTT+TGG + chr1_3:20535748-20535767 Msa0108870:intron 40.0%
! ACTGCTGGAAAAGTTTGCTT+GGG + chr1_3:20535872-20535891 Msa0108870:CDS 40.0%
TTGACAGTCCATGAAGAAAG+GGG - chr1_3:20536106-20536125 None:intergenic 40.0%
GTTTGACAGTCCATGAAGAA+AGG - chr1_3:20536108-20536127 None:intergenic 40.0%
GTGGATAATGAGGCAAAGTT+TGG + chr1_3:20536167-20536186 Msa0108870:three_prime_UTR 40.0%
AGAACGAGGTTGAGATTGTG+TGG - chr1_3:20527553-20527572 None:intergenic 45.0%
TTGGTTAATGAGCTCCCCAT+AGG + chr1_3:20527991-20528010 Msa0108870:intron 45.0%
CCCGATCAAATCTTCCTATG+GGG - chr1_3:20528008-20528027 None:intergenic 45.0%
CCCCATAGGAAGATTTGATC+GGG + chr1_3:20528005-20528024 Msa0108870:intron 45.0%
GGAAAACCCTAGTTCGATTC+TGG + chr1_3:20528026-20528045 Msa0108870:intron 45.0%
TTCCACCCAGAATCGAACTA+GGG - chr1_3:20528035-20528054 None:intergenic 45.0%
CTTATCTCCTGTCCAAACTC+TGG + chr1_3:20528075-20528094 Msa0108870:intron 45.0%
CCAAACTCTGGATTATCAGG+GGG + chr1_3:20528087-20528106 Msa0108870:intron 45.0%
ATGTAAGCCCTAGCATTTGG+TGG + chr1_3:20528624-20528643 Msa0108870:intron 45.0%
CAACAACACCACCAAATGCT+AGG - chr1_3:20528635-20528654 None:intergenic 45.0%
TAATCACAACATGCTCTGCG+TGG - chr1_3:20529042-20529061 None:intergenic 45.0%
CTTCTCATAGTCACGATGGA+CGG + chr1_3:20529216-20529235 Msa0108870:CDS 45.0%
GAACTTTGGCCATTTGCAGA+AGG - chr1_3:20529266-20529285 None:intergenic 45.0%
CGTTCTGTGAGCTAGAACTT+TGG - chr1_3:20529280-20529299 None:intergenic 45.0%
TGTCTCAACCTCAACCTCTA+AGG + chr1_3:20529307-20529326 Msa0108870:CDS 45.0%
TGAAGAATCCGAAGACGAGA+TGG + chr1_3:20529532-20529551 Msa0108870:CDS 45.0%
CTCTTAACAGGCAGTGTAGA+CGG - chr1_3:20529851-20529870 None:intergenic 45.0%
ATCGGTGAAATCTGAACCGA+AGG + chr1_3:20529958-20529977 Msa0108870:CDS 45.0%
GAAATCTGAACCGAAGGTTG+CGG + chr1_3:20529964-20529983 Msa0108870:CDS 45.0%
ACTAAACTTCCTCCAAGCTC+CGG + chr1_3:20530175-20530194 Msa0108870:CDS 45.0%
!!! CCATTTTTTCTGCCCATCAC+CGG - chr1_3:20530197-20530216 None:intergenic 45.0%
! TAGAGCATCTTTACCCCATG+GGG - chr1_3:20530265-20530284 None:intergenic 45.0%
ATCCTACCTCCTCTTGTTCA+GGG - chr1_3:20530312-20530331 None:intergenic 45.0%
AATCCTACCTCCTCTTGTTC+AGG - chr1_3:20530313-20530332 None:intergenic 45.0%
!! CACTGTTTTGGGTGACTGTT+TGG + chr1_3:20530353-20530372 Msa0108870:intron 45.0%
CCCCACAAAACCAACATGTA+AGG - chr1_3:20530629-20530648 None:intergenic 45.0%
GACTGACTGGAAGGTGATAT+TGG + chr1_3:20530871-20530890 Msa0108870:CDS 45.0%
CAGGACAAGCAAGTTCTTTC+GGG - chr1_3:20531416-20531435 None:intergenic 45.0%
ACAACCTTCCAGAACAGACA+AGG + chr1_3:20531553-20531572 Msa0108870:intron 45.0%
CAACCTTCCAGAACAGACAA+GGG + chr1_3:20531554-20531573 Msa0108870:intron 45.0%
! TAACCCTTGTCTGTTCTGGA+AGG - chr1_3:20531560-20531579 None:intergenic 45.0%
!!! GGTTTTTTCCGAGTTTGCAC+TGG + chr1_3:20531589-20531608 Msa0108870:intron 45.0%
!! ATTGGATTTGGTGTCTCAGC+AGG + chr1_3:20531618-20531637 Msa0108870:intron 45.0%
!! TTGGATTTGGTGTCTCAGCA+GGG + chr1_3:20531619-20531638 Msa0108870:intron 45.0%
AGAACTCGTTATGTTGGGAC+TGG - chr1_3:20531691-20531710 None:intergenic 45.0%
TCAGGAGAAAAAGGCCCTAA+AGG + chr1_3:20532077-20532096 Msa0108870:intron 45.0%
TCACCAGGAATAGGACATTC+AGG - chr1_3:20532846-20532865 None:intergenic 45.0%
CAGTTACTTGGTTGGCGTAT+TGG + chr1_3:20533006-20533025 Msa0108870:CDS 45.0%
! TTCTGGGAGCTAGTAGTTCT+TGG + chr1_3:20533066-20533085 Msa0108870:CDS 45.0%
GGAGCTAGTAGTTCTTGGAA+GGG + chr1_3:20533071-20533090 Msa0108870:CDS 45.0%
GAGCTAGTAGTTCTTGGAAG+GGG + chr1_3:20533072-20533091 Msa0108870:CDS 45.0%
TAATGACCGTGATTCCTTGC+TGG + chr1_3:20534010-20534029 Msa0108870:intron 45.0%
! CGAGGAACTTTTTGACAAGC+TGG + chr1_3:20534225-20534244 Msa0108870:CDS 45.0%
!! GAAGACTTTTGCTGTCAGGT+TGG - chr1_3:20534290-20534309 None:intergenic 45.0%
!! TACGGAAGACTTTTGCTGTC+AGG - chr1_3:20534294-20534313 None:intergenic 45.0%
! TGTCGCCTCTAAAGACCAAA+CGG + chr1_3:20535052-20535071 Msa0108870:CDS 45.0%
CAACTGATATCCTGGGATCT+AGG - chr1_3:20535292-20535311 None:intergenic 45.0%
GCACGAGGTTCCTATTGAAA+AGG + chr1_3:20535325-20535344 Msa0108870:CDS 45.0%
! CACTGCTGGAAAAGTTTGCT+TGG + chr1_3:20535871-20535890 Msa0108870:CDS 45.0%
! GGAAAAGTTTGCTTGGGCAA+TGG + chr1_3:20535878-20535897 Msa0108870:CDS 45.0%
! AGGTCTCAGAATCTGAAGTC+AGG - chr1_3:20535912-20535931 None:intergenic 45.0%
! GCTGAAGAACAGGTGTTGCA+CGG - chr1_3:20527502-20527521 None:intergenic 50.0%
TTGGGGAGTAGCTGAAGAAC+AGG - chr1_3:20527512-20527531 None:intergenic 50.0%
CGAGGTTGAGATTGTGTGGT+CGG - chr1_3:20527549-20527568 None:intergenic 50.0%
GATGAGTGAGGAAGAGAACG+AGG - chr1_3:20527567-20527586 None:intergenic 50.0%
AACCCTAGTTCGATTCTGGG+TGG + chr1_3:20528030-20528049 Msa0108870:intron 50.0%
GTTCCACCCAGAATCGAACT+AGG - chr1_3:20528036-20528055 None:intergenic 50.0%
TGGGTGGAACAATTCTTGGC+CGG + chr1_3:20528046-20528065 Msa0108870:intron 50.0%
CCCCCTGATAATCCAGAGTT+TGG - chr1_3:20528090-20528109 None:intergenic 50.0%
ACTCTGGATTATCAGGGGGA+AGG + chr1_3:20528091-20528110 Msa0108870:intron 50.0%
CTCTGGATTATCAGGGGGAA+GGG + chr1_3:20528092-20528111 Msa0108870:intron 50.0%
CAAATAGCTGTGGAGGCTTG+TGG + chr1_3:20529086-20529105 Msa0108870:five_prime_UTR 50.0%
! ATTTGCAGAAGGCACGTCAG+GGG - chr1_3:20529255-20529274 None:intergenic 50.0%
! CATTTGCAGAAGGCACGTCA+GGG - chr1_3:20529256-20529275 None:intergenic 50.0%
!! TTCTAGCTCACAGAACGGCA+AGG + chr1_3:20529283-20529302 Msa0108870:CDS 50.0%
ATCTGCCGTGGAATCTTCTG+TGG + chr1_3:20529331-20529350 Msa0108870:CDS 50.0%
TCTGCCGTGGAATCTTCTGT+GGG + chr1_3:20529332-20529351 Msa0108870:CDS 50.0%
!! CCGGTGATGGGCAGAAAAAA+TGG + chr1_3:20530194-20530213 Msa0108870:CDS 50.0%
TTTACCCCATGGGGCTTGTA+AGG - chr1_3:20530256-20530275 None:intergenic 50.0%
GATGCTCTATAAGGGGAAGC+CGG + chr1_3:20530276-20530295 Msa0108870:CDS 50.0%
TGTTCAGGGGTCAAAGTCAC+CGG - chr1_3:20530298-20530317 None:intergenic 50.0%
GACTTTGACCCCTGAACAAG+AGG + chr1_3:20530300-20530319 Msa0108870:CDS 50.0%
TTTGACCCCTGAACAAGAGG+AGG + chr1_3:20530303-20530322 Msa0108870:CDS 50.0%
TCCTACCTCCTCTTGTTCAG+GGG - chr1_3:20530311-20530330 None:intergenic 50.0%
ACATCTAACCTGAGACCCTC+AGG - chr1_3:20530562-20530581 None:intergenic 50.0%
ACTTCACTTGAGTGCCACCT+GGG - chr1_3:20531445-20531464 None:intergenic 50.0%
AACTTCACTTGAGTGCCACC+TGG - chr1_3:20531446-20531465 None:intergenic 50.0%
GCGACTGCAAACTGAATGCT+TGG - chr1_3:20531476-20531495 None:intergenic 50.0%
!! ACGAGTTCTGAGTTGGGTTC+AGG + chr1_3:20531702-20531721 Msa0108870:intron 50.0%
GGAGAAAAAGGCCCTAAAGG+AGG + chr1_3:20532080-20532099 Msa0108870:intron 50.0%
AGCGGTTCACAGCACAATGT+GGG + chr1_3:20532221-20532240 Msa0108870:intron 50.0%
TCTCTAGTCCCTTCCCAAGA+AGG - chr1_3:20532301-20532320 None:intergenic 50.0%
ATTTGTGTGCTCTTGGCAGC+TGG + chr1_3:20532961-20532980 Msa0108870:intron 50.0%
GGGAGCTAGTAGTTCTTGGA+AGG + chr1_3:20533070-20533089 Msa0108870:CDS 50.0%
TTGGAAGGGGCAAAGTGACA+AGG + chr1_3:20533085-20533104 Msa0108870:CDS 50.0%
!! TGAGAAAGCAAGGGCGTTGA+AGG + chr1_3:20533115-20533134 Msa0108870:CDS 50.0%
!! GACAAACTAGCTTTGAGGGC+TGG + chr1_3:20533332-20533351 Msa0108870:CDS 50.0%
! TTTGAGGGCTGGCAATGAGA+AGG + chr1_3:20533343-20533362 Msa0108870:CDS 50.0%
TTCAGGAGCCAAGTTCCGTT+TGG - chr1_3:20535070-20535089 None:intergenic 50.0%
ATCCCAGGATATCAGTTGCC+TGG + chr1_3:20535294-20535313 Msa0108870:CDS 50.0%
CACCAGGCAACTGATATCCT+GGG - chr1_3:20535299-20535318 None:intergenic 50.0%
TATCAGTTGCCTGGTGCAAG+CGG + chr1_3:20535303-20535322 Msa0108870:CDS 50.0%
ATGGGAAGCAACCTAGCTTC+CGG - chr1_3:20535523-20535542 None:intergenic 50.0%
ATCCCTGTCCCCTTTCTTCA+TGG + chr1_3:20536095-20536114 Msa0108870:three_prime_UTR 50.0%
GTCCATGAAGAAAGGGGACA+GGG - chr1_3:20536100-20536119 None:intergenic 50.0%
AGTCCATGAAGAAAGGGGAC+AGG - chr1_3:20536101-20536120 None:intergenic 50.0%
GAGATTGTGTGGTCGGAGGA+GGG - chr1_3:20527542-20527561 None:intergenic 55.0%
TGAGATTGTGTGGTCGGAGG+AGG - chr1_3:20527543-20527562 None:intergenic 55.0%
GGTTGAGATTGTGTGGTCGG+AGG - chr1_3:20527546-20527565 None:intergenic 55.0%
! CCATTTGCAGAAGGCACGTC+AGG - chr1_3:20529257-20529276 None:intergenic 55.0%
CCTGACGTGCCTTCTGCAAA+TGG + chr1_3:20529254-20529273 Msa0108870:CDS 55.0%
GGCAGATGCCTTAGAGGTTG+AGG - chr1_3:20529318-20529337 None:intergenic 55.0%
!! AACCTCTAAGGCATCTGCCG+TGG + chr1_3:20529319-20529338 Msa0108870:CDS 55.0%
TTCCACGGCAGATGCCTTAG+AGG - chr1_3:20529324-20529343 None:intergenic 55.0%
ACCTATGTGAGGTCCCCTTC+AGG + chr1_3:20529389-20529408 Msa0108870:CDS 55.0%
TCCTGAAGGGGACCTCACAT+AGG - chr1_3:20529393-20529412 None:intergenic 55.0%
TGTAGCCGCCTTGCTGACAA+AGG - chr1_3:20529707-20529726 None:intergenic 55.0%
ATCTGAACCGAAGGTTGCGG+AGG + chr1_3:20529967-20529986 Msa0108870:CDS 55.0%
TTCCTCCAAGCTCCGGTGAT+GGG + chr1_3:20530182-20530201 Msa0108870:CDS 55.0%
CATGGGGCTTGTAAGGAGGT+GGG - chr1_3:20530249-20530268 None:intergenic 55.0%
CACCTCCTTACAAGCCCCAT+GGG + chr1_3:20530248-20530267 Msa0108870:CDS 55.0%
ACCTCCTTACAAGCCCCATG+GGG + chr1_3:20530249-20530268 Msa0108870:CDS 55.0%
ACCCCTGAACAAGAGGAGGT+AGG + chr1_3:20530307-20530326 Msa0108870:intron 55.0%
ATGTCCAGTCATGGGCGTGA+GGG + chr1_3:20530523-20530542 Msa0108870:intron 55.0%
CAGCGGTTCACAGCACAATG+TGG + chr1_3:20532220-20532239 Msa0108870:intron 55.0%
GACGAAGCTGCTGACACAGT+TGG + chr1_3:20533836-20533855 Msa0108870:CDS 55.0%
GCACCAGGCAACTGATATCC+TGG - chr1_3:20535300-20535319 None:intergenic 55.0%
TCGGAGGAGGGAAGGGAGTT+GGG - chr1_3:20527530-20527549 None:intergenic 60.0%
TGTGTGGTCGGAGGAGGGAA+GGG - chr1_3:20527537-20527556 None:intergenic 60.0%
TTGTGTGGTCGGAGGAGGGA+AGG - chr1_3:20527538-20527557 None:intergenic 60.0%
TGAACCGAAGGTTGCGGAGG+AGG + chr1_3:20529970-20529989 Msa0108870:CDS 60.0%
TCGTCCTCCTCCGCAACCTT+CGG - chr1_3:20529977-20529996 None:intergenic 60.0%
CTTCCTCCAAGCTCCGGTGA+TGG + chr1_3:20530181-20530200 Msa0108870:CDS 60.0%
TTCTGCCCATCACCGGAGCT+TGG - chr1_3:20530190-20530209 None:intergenic 60.0%
CCATGGGGCTTGTAAGGAGG+TGG - chr1_3:20530250-20530269 None:intergenic 60.0%
CCACCTCCTTACAAGCCCCA+TGG + chr1_3:20530247-20530266 Msa0108870:CDS 60.0%
ACCCCATGGGGCTTGTAAGG+AGG - chr1_3:20530253-20530272 None:intergenic 60.0%
GATGTCCAGTCATGGGCGTG+AGG + chr1_3:20530522-20530541 Msa0108870:intron 60.0%
! GGAGGTGTGTTGAGGCCTGA+GGG + chr1_3:20530544-20530563 Msa0108870:intron 60.0%
TGTTGAGGCCTGAGGGTCTC+AGG + chr1_3:20530551-20530570 Msa0108870:intron 60.0%
TGCTTGTCCTGTGTCCTCCC+AGG + chr1_3:20531425-20531444 Msa0108870:intron 60.0%
TTGTCCTGTGTCCTCCCAGG+TGG + chr1_3:20531428-20531447 Msa0108870:intron 60.0%
TCACTTGAGTGCCACCTGGG+AGG - chr1_3:20531442-20531461 None:intergenic 60.0%
GAACCACCAGGACTGTTCCG+TGG + chr1_3:20532578-20532597 Msa0108870:CDS 60.0%
TGGGATGCTCTCCACGTCCA+CGG - chr1_3:20532598-20532617 None:intergenic 60.0%
!! TGGACGTGGAGAGCATCCCA+AGG + chr1_3:20532598-20532617 Msa0108870:CDS 60.0%
CGGAGGAGGGAAGGGAGTTG+GGG - chr1_3:20527529-20527548 None:intergenic 65.0%
GTCGGAGGAGGGAAGGGAGT+TGG - chr1_3:20527531-20527550 None:intergenic 65.0%
TGCCCATCACCGGAGCTTGG+AGG - chr1_3:20530187-20530206 None:intergenic 65.0%
TCCAGTCATGGGCGTGAGGG+AGG + chr1_3:20530526-20530545 Msa0108870:intron 65.0%
ACCTCCCTCACGCCCATGAC+TGG - chr1_3:20530530-20530549 None:intergenic 65.0%
! GGCGTGAGGGAGGTGTGTTG+AGG + chr1_3:20530536-20530555 Msa0108870:intron 65.0%
! GGGAGGTGTGTTGAGGCCTG+AGG + chr1_3:20530543-20530562 Msa0108870:intron 65.0%
AGTGCCACCTGGGAGGACAC+AGG - chr1_3:20531435-20531454 None:intergenic 65.0%
CGTCCACGGAACAGTCCTGG+TGG - chr1_3:20532584-20532603 None:intergenic 65.0%
CCACGTCCACGGAACAGTCC+TGG - chr1_3:20532587-20532606 None:intergenic 65.0%
CCAGGACTGTTCCGTGGACG+TGG + chr1_3:20532584-20532603 Msa0108870:CDS 65.0%
!! AACCTCGTGCCGCTTGCACC+AGG - chr1_3:20535315-20535334 None:intergenic 65.0%
TGCCTGGTGCAAGCGGCACG+AGG + chr1_3:20535310-20535329 Msa0108870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 20527430 20536244 20527430 ID=Msa0108870;Name=Msa0108870
chr1_3 mRNA 20527430 20536244 20527430 ID=Msa0108870-mRNA-1;Parent=Msa0108870;Name=Msa0108870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=270|1|1|1|0.93|0.93|16|318|904
chr1_3 exon 20527430 20527627 20527430 ID=Msa0108870-mRNA-1:exon:7438;Parent=Msa0108870-mRNA-1
chr1_3 exon 20529047 20530324 20529047 ID=Msa0108870-mRNA-1:exon:7439;Parent=Msa0108870-mRNA-1
chr1_3 exon 20530800 20530994 20530800 ID=Msa0108870-mRNA-1:exon:7440;Parent=Msa0108870-mRNA-1
chr1_3 exon 20532081 20532161 20532081 ID=Msa0108870-mRNA-1:exon:7441;Parent=Msa0108870-mRNA-1
chr1_3 exon 20532560 20532619 20532560 ID=Msa0108870-mRNA-1:exon:7442;Parent=Msa0108870-mRNA-1
chr1_3 exon 20532774 20532868 20532774 ID=Msa0108870-mRNA-1:exon:7443;Parent=Msa0108870-mRNA-1
chr1_3 exon 20532980 20533136 20532980 ID=Msa0108870-mRNA-1:exon:7444;Parent=Msa0108870-mRNA-1
chr1_3 exon 20533239 20533364 20533239 ID=Msa0108870-mRNA-1:exon:7445;Parent=Msa0108870-mRNA-1
chr1_3 exon 20533830 20533913 20533830 ID=Msa0108870-mRNA-1:exon:7446;Parent=Msa0108870-mRNA-1
chr1_3 exon 20534043 20534133 20534043 ID=Msa0108870-mRNA-1:exon:7447;Parent=Msa0108870-mRNA-1
chr1_3 exon 20534212 20534345 20534212 ID=Msa0108870-mRNA-1:exon:7448;Parent=Msa0108870-mRNA-1
chr1_3 exon 20534628 20534696 20534628 ID=Msa0108870-mRNA-1:exon:7449;Parent=Msa0108870-mRNA-1
chr1_3 exon 20534790 20534879 20534790 ID=Msa0108870-mRNA-1:exon:7450;Parent=Msa0108870-mRNA-1
chr1_3 exon 20535003 20535091 20535003 ID=Msa0108870-mRNA-1:exon:7451;Parent=Msa0108870-mRNA-1
chr1_3 exon 20535178 20535346 20535178 ID=Msa0108870-mRNA-1:exon:7452;Parent=Msa0108870-mRNA-1
chr1_3 exon 20535858 20536244 20535858 ID=Msa0108870-mRNA-1:exon:7453;Parent=Msa0108870-mRNA-1
chr1_3 five_prime_UTR 20527430 20527627 20527430 ID=Msa0108870-mRNA-1:five_prime_utr;Parent=Msa0108870-mRNA-1
chr1_3 five_prime_UTR 20529047 20529118 20529047 ID=Msa0108870-mRNA-1:five_prime_utr;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20529119 20530324 20529119 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20530800 20530994 20530800 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20532081 20532161 20532081 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20532560 20532619 20532560 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20532774 20532868 20532774 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20532980 20533136 20532980 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20533239 20533364 20533239 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20533830 20533913 20533830 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20534043 20534133 20534043 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20534212 20534345 20534212 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20534628 20534696 20534628 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20534790 20534879 20534790 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20535003 20535091 20535003 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20535178 20535346 20535178 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 CDS 20535858 20535926 20535858 ID=Msa0108870-mRNA-1:cds;Parent=Msa0108870-mRNA-1
chr1_3 three_prime_UTR 20535927 20536244 20535927 ID=Msa0108870-mRNA-1:three_prime_utr;Parent=Msa0108870-mRNA-1
Gene Sequence

>Msa0108870

ATGGCGCACGAATTTGATGATGAAGATGGTCCAGTAATTTTTAAAAGGATTTCAGTGTCGAAGAGTACTCAATTGCATTCAGAAACAAGGAAGTCAACTTCTCATAGTCACGATGGACGGTCATTTAAAAAGACCCCTGACGTGCCTTCTGCAAATGGCCAAAGTTCTAGCTCACAGAACGGCAAGGTTGTCTCAACCTCAACCTCTAAGGCATCTGCCGTGGAATCTTCTGTGGGTATATCAAAAGCATCAACATCAACAAATCTCAAAACCTATGTGAGGTCCCCTTCAGGAAGTTCAAAATTTGCATCATTAGGAAATAAAAAAGAGTCTCTTACAGAGAAGAAAATTCCCGTTCATGTTCATGTTAAGGAGGACAATAATTCTAGCAAACATGGTAAGGAAGAAAGTTGTGAAGAATCCGAAGACGAGATGGATAATATACCATTGAGTGCTAGGATGAAGATGAACAGTGACGGTGCCAAAAAAACAACTCCTGTTGTCGTCAAGAAATCTCATGAAGATTCTAAGAAAACAACTCCTGTTGTTGTCAACAAATCTCACGAAGATTCTGATGATGATATTCCTTTGTCAGCAAGGCGGCTACAGAATAATAATAATTTGGGAAAATCTAGTAATAACAATGGTGGCTCTGATCATAAGAAACCACTTTCAAATGTTCAGAAAGGACAGCAATATGGCTCTAATGTTGGTATTAAACAAGAAAGGCCGTCTACACTGCCTGTTAAGAGACCACTAGATAAGACTGATTCCTCGCATTCTTCTGTTAAGAAATCAAAACTCTCAGATCCAGCTCCATCGATTAATGCTAAACAGACATCGGTGAAATCTGAACCGAAGGTTGCGGAGGAGGACGATGATGATGATGATGTTCCTCTTTCCCAAAGAATGAATAAGCATGCCACATCAGTGACTAAATCATCTTCTGTGAAGAAGCTGACAAGCGTCACTAAAGTCAACAAGAGTTATGCTCCATCTTTTAAGAAAAAGGCAAATTTCAAAAAACCAGGCAATAAATCAGAACAGTTCAAATCTACTAAACTTCCTCCAAGCTCCGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTATCATCTTCCCACCTCCTTACAAGCCCCATGGGGTAAAGATGCTCTATAAGGGGAAGCCGGTGACTTTGACCCCTGAACAAGAGGAGGTTGCAACATTATATGCGGTCATGCGGGATACAGAATACATGCAAAAGGCAAAATTCAAGGAAAACTTTTGGACTGACTGGAAGGTGATATTGGGAAAAAATCATGTGATTCAGAATTTGGAAGATTGTGACTTTACACCGATTTATGATTGGTGCCAAATTGAAAAGGAGAAGAAGAAACAATTGAGCGCAGCAGAGAAAAAGGCCCTAAAGGAGGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGCAATTTTAGAGCTGAACCACCAGGACTGTTCCGTGGACGTGGAGAGCATCCCAAGATGGGAAAATTGAAAAGACGCATTGGTCCAAGTGACGTCGTAATTAATATTGGAAGGGATGCACCAATTCCTGAATGTCCTATTCCTGGTGAAAGCTGGAAAGAGATAAGACATGATAATACAGTTACTTGGTTGGCGTATTGGAATGACCCAATCAATAATAAGTTATTCAAATACGTGTTTCTGGGAGCTAGTAGTTCTTGGAAGGGGCAAAGTGACAAGGAAAAGTATGAGAAAGCAAGGGCGTTGAAGAATTATATAGAGAGAATTAGGGCGGCATATACGAAAGATTTCACGAGCAAAGATATTACAAAGCAGCAAATTGCTGTTGCTACTTATTTTATTGACAAACTAGCTTTGAGGGCTGGCAATGAGAAGGATGATGACGAAGCTGCTGACACAGTTGGTTGTTGCACATTAAAAGTAGAAAATGTGACTGCAGAAGGTGACAACAAGTTGAAGTTTGACTTCCTTGGTAAAGATTCTATCAGGTATGAAAATACAGTTGAGGTGGAGCCTCCTGTTTACAATGCCATTTTGAAGTTCCAAAAAGGTAAAAAACCTAGCGAGGAACTTTTTGACAAGCTGGATACAAGTACATTAAATAGTCATCTGAAGGAACTCATGCCCAACCTGACAGCAAAAGTCTTCCGTACATTCAATGCATCATTCACTTTGGATGATATGTTGAATAAGGATACTAAAGATGGAGATGTTGCAGAAAAAGTTCTTGTCTATAATCAGGCAAACAAACAGGTTGCAATCATTTGTAATCATCAACGTGCTGTTTCAAAATCTCACGGCACACAAATTTCAAAGTTGAATGAAAAGATTGATGAACTTAAGGCTCTTTCGAAGGAGCTGAAAACAGATTACGACAGGGCAAAAAAAGGAATGTCGCCTCTAAAGACCAAACGGAACTTGGCTCCTGAAGCGATAAAGAAAAAGATGGATCAAACCAGCGCAAAAATTAAGAAAATGGAACGTGATATGATGACTAAAGAAGATTTAAAAACTGTGGCACTTGGCACGTCCAAGATAAACTACCTAGATCCCAGGATATCAGTTGCCTGGTGCAAGCGGCACGAGGTTCCTATTGAAAAGATTTTCAGTAAAACACTGCTGGAAAAGTTTGCTTGGGCAATGGATGTAGATCCTGACTTCAGATTCTGA
Protein sequence

>Msa0108870

MAHEFDDEDGPVIFKRISVSKSTQLHSETRKSTSHSHDGRSFKKTPDVPSANGQSSSSQNGKVVSTSTSKASAVESSVGISKASTSTNLKTYVRSPSGSSKFASLGNKKESLTEKKIPVHVHVKEDNNSSKHGKEESCEESEDEMDNIPLSARMKMNSDGAKKTTPVVVKKSHEDSKKTTPVVVNKSHEDSDDDIPLSARRLQNNNNLGKSSNNNGGSDHKKPLSNVQKGQQYGSNVGIKQERPSTLPVKRPLDKTDSSHSSVKKSKLSDPAPSINAKQTSVKSEPKVAEEDDDDDDVPLSQRMNKHATSVTKSSSVKKLTSVTKVNKSYAPSFKKKANFKKPGNKSEQFKSTKLPPSSGDGQKKWTTLVHNGIIFPPPYKPHGVKMLYKGKPVTLTPEQEEVATLYAVMRDTEYMQKAKFKENFWTDWKVILGKNHVIQNLEDCDFTPIYDWCQIEKEKKKQLSAAEKKALKEEKMKQEEKYMWAIVDGVKEKVGNFRAEPPGLFRGRGEHPKMGKLKRRIGPSDVVINIGRDAPIPECPIPGESWKEIRHDNTVTWLAYWNDPINNKLFKYVFLGASSSWKGQSDKEKYEKARALKNYIERIRAAYTKDFTSKDITKQQIAVATYFIDKLALRAGNEKDDDEAADTVGCCTLKVENVTAEGDNKLKFDFLGKDSIRYENTVEVEPPVYNAILKFQKGKKPSEELFDKLDTSTLNSHLKELMPNLTAKVFRTFNASFTLDDMLNKDTKDGDVAEKVLVYNQANKQVAIICNHQRAVSKSHGTQISKLNEKIDELKALSKELKTDYDRAKKGMSPLKTKRNLAPEAIKKKMDQTSAKIKKMERDMMTKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFSKTLLEKFAWAMDVDPDFRF*