AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201830 MtrunA17_Chr8g0372081 98.361 122 2 0 1 122 1 122 4.88e-86 246
Msa1201830 MtrunA17_Chr3g0091791 33.945 109 56 2 10 118 45 137 8.21e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201830 AT2G18040.1 77.876 113 25 0 9 121 6 118 3.33e-63 188
Msa1201830 AT1G26550.1 33.028 109 57 1 10 118 43 135 1.40e-12 60.8

Find 43 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAGAGGATATCCTTTC+TGG 0.182475 8_1:+55106423 Msa1201830:CDS
GGACCGACATCGAGGTTATC+TGG 0.263250 8_1:-55106101 None:intergenic
ATGCTACAGTTCACTCTAAA+AGG 0.268343 8_1:-55108391 None:intergenic
TTCTTGGCTGTAGGTCCTTT+TGG 0.284324 8_1:+55108233 Msa1201830:intron
CGAAGCAAGATCCTCAAATT+TGG 0.289474 8_1:-55106451 None:intergenic
TTCTTGATGACGTAACCTTC+TGG 0.327996 8_1:-55106363 None:intergenic
CTTCAAAAGGCTTCTGCATC+TGG 0.328903 8_1:-55108262 None:intergenic
GTATTTAGCTATTTATAGAT+TGG 0.351772 8_1:-55106122 None:intergenic
CAAGGTAACGTGTTCATAAT+TGG 0.360947 8_1:-55108629 None:intergenic
GCTAAACGCGGTGGCGATCT+TGG 0.368998 8_1:+55106495 Msa1201830:CDS
AATTTGTTCTCTTGATTATG+TGG 0.388827 8_1:-55108346 None:intergenic
TCGCGGCGGCGCTGAGGTTA+GGG 0.411373 8_1:+55106284 Msa1201830:CDS
TTCTGGTAAGGCCAAATTTG+AGG 0.428366 8_1:+55106440 Msa1201830:CDS
CAAATTTGGCCTTACCAGAA+AGG 0.448271 8_1:-55106437 None:intergenic
TATTCTTACTTCAATGAAAG+AGG 0.454286 8_1:+55106410 Msa1201830:CDS
GCATAAGTTGCATCTTCAAA+AGG 0.464113 8_1:-55108275 None:intergenic
TGCATCTGGCCACGACCAAA+AGG 0.471277 8_1:-55108248 None:intergenic
ATATATTGATAATTTAATCA+TGG 0.484510 8_1:+55108458 Msa1201830:three_prime_UTR
GCAACTTATGCTCTTCAAGT+TGG 0.495197 8_1:+55108287 Msa1201830:CDS
ATCAATTTCGTCGGCGACGG+CGG 0.499635 8_1:+55106212 Msa1201830:five_prime_UTR
GACCGACATCGAGGTTATCT+GGG 0.500421 8_1:-55106100 None:intergenic
ATTTGTTCTCTTGATTATGT+GGG 0.511033 8_1:-55108345 None:intergenic
AGAGGATATCCTTTCTGGTA+AGG 0.533949 8_1:+55106428 Msa1201830:CDS
AACATCAATTTCGTCGGCGA+CGG 0.538566 8_1:+55106209 Msa1201830:five_prime_UTR
AGTTAACTCGCGAATCTGCT+TGG 0.549214 8_1:-55106144 None:intergenic
AATTTGAGGATCTTGCTTCG+AGG 0.550226 8_1:+55106454 Msa1201830:CDS
GTTCTAGAAGAAAAGCTTCG+TGG 0.556909 8_1:+55106334 Msa1201830:CDS
TGGTGAAATTAGTGACATTG+TGG 0.589271 8_1:+55108307 Msa1201830:CDS
CATTGAAGTAAGAATAGCAA+CGG 0.597353 8_1:-55106403 None:intergenic
AAAGAAAACATCAATTTCGT+CGG 0.601646 8_1:+55106203 Msa1201830:five_prime_UTR
GTAGTGATAGAATTCACGAC+AGG 0.641471 8_1:-55108607 None:intergenic
GCGAAAATGTCTTCATCTCG+CGG 0.645162 8_1:+55106267 Msa1201830:exon
AGAACAAATTGATTATTACA+CGG 0.651834 8_1:+55108359 Msa1201830:exon
ATATTAGACTATCGGTAACA+AGG 0.652794 8_1:-55108647 None:intergenic
CACATACTGATTAAACACGA+AGG 0.672969 8_1:+55106312 Msa1201830:CDS
GACCCAGATAACCTCGATGT+CGG 0.673083 8_1:+55106098 Msa1201830:five_prime_UTR
GACATTGTGGATAGTGACAG+TGG 0.676092 8_1:+55108320 Msa1201830:CDS
TGTAGCTCTGCTAAACGCGG+TGG 0.678782 8_1:+55106486 Msa1201830:CDS
GATTGTAGCTCTGCTAAACG+CGG 0.692633 8_1:+55106483 Msa1201830:CDS
CGCGAGTTAACTGACAGTGA+CGG 0.693345 8_1:+55106155 Msa1201830:five_prime_UTR
GCTTCGTGGAAAGATCCAGA+AGG 0.706542 8_1:+55106348 Msa1201830:CDS
TATAGATTGGACCGACATCG+AGG 0.714981 8_1:-55106109 None:intergenic
AAAATGTCTTCATCTCGCGG+CGG 0.772656 8_1:+55106270 Msa1201830:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTGATAATTTAATCA+TGG + chr8_1:55108458-55108477 Msa1201830:three_prime_UTR 10.0%
!! ATATGAAAAAATGAATTAGT+TGG + chr8_1:55106761-55106780 Msa1201830:intron 15.0%
!! TAAAATTGTTCAAAATTGTA+TGG - chr8_1:55107272-55107291 None:intergenic 15.0%
!! AAAGTAACAAAAAAACTTAA+GGG - chr8_1:55107336-55107355 None:intergenic 15.0%
!!! GTATTGATTAAAATTCAAAT+GGG - chr8_1:55108069-55108088 None:intergenic 15.0%
!!! TGTATTGATTAAAATTCAAA+TGG - chr8_1:55108070-55108089 None:intergenic 15.0%
!!! TTTGAATTTTAATCAATACA+AGG + chr8_1:55108070-55108089 Msa1201830:intron 15.0%
!!! TTGAATTTTAATCAATACAA+GGG + chr8_1:55108071-55108090 Msa1201830:intron 15.0%
!!! TAATTTTGAAAAACATTCAT+GGG + chr8_1:55108549-55108568 Msa1201830:three_prime_UTR 15.0%
!! GTATTTAGCTATTTATAGAT+TGG - chr8_1:55106125-55106144 None:intergenic 20.0%
!!! ATTCTTTCTAGTAAATTACA+AGG - chr8_1:55107133-55107152 None:intergenic 20.0%
!! TGTAATTTACTAGAAAGAAT+AGG + chr8_1:55107133-55107152 Msa1201830:intron 20.0%
!! AATTTCTTGTCAAAGTAATT+TGG + chr8_1:55107242-55107261 Msa1201830:intron 20.0%
!! GAAAGTAACAAAAAAACTTA+AGG - chr8_1:55107337-55107356 None:intergenic 20.0%
!!! TTTTTTCAGTTGAACTAAAA+TGG + chr8_1:55108205-55108224 Msa1201830:intron 20.0%
!! AGAACAAATTGATTATTACA+CGG + chr8_1:55108359-55108378 Msa1201830:exon 20.0%
!!! GTAATTTTGAAAAACATTCA+TGG + chr8_1:55108548-55108567 Msa1201830:three_prime_UTR 20.0%
!!! AATTTTGAAAAACATTCATG+GGG + chr8_1:55108550-55108569 Msa1201830:three_prime_UTR 20.0%
! AAAGAAAACATCAATTTCGT+CGG + chr8_1:55106203-55106222 Msa1201830:five_prime_UTR 25.0%
! TATTCTTACTTCAATGAAAG+AGG + chr8_1:55106410-55106429 Msa1201830:CDS 25.0%
!!! TGTTTTTGAATTGGATTATG+AGG + chr8_1:55106558-55106577 Msa1201830:intron 25.0%
!! GTTTTTGAATTGGATTATGA+GGG + chr8_1:55106559-55106578 Msa1201830:intron 25.0%
!! AGTTATTGTGTTACTGTTAT+TGG + chr8_1:55106620-55106639 Msa1201830:intron 25.0%
! ACAAGATTATGATTGTCATA+CGG + chr8_1:55107157-55107176 Msa1201830:intron 25.0%
!!! AAATTTGTAAGTTGGTTGAT+AGG - chr8_1:55107227-55107246 None:intergenic 25.0%
! TTGACAAGAAATTTGTAAGT+TGG - chr8_1:55107235-55107254 None:intergenic 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr8_1:55107447-55107466 Msa1201830:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr8_1:55107487-55107506 None:intergenic 25.0%
!! TCTTTTCTAATGGTTTTCTT+AGG + chr8_1:55107492-55107511 Msa1201830:intron 25.0%
!!! GGTTTTGTAAAATGAATTCA+AGG - chr8_1:55107946-55107965 None:intergenic 25.0%
!! ATGTTACTAGCATTTCTTTT+AGG - chr8_1:55107971-55107990 None:intergenic 25.0%
! GTTGAAAATAATATGTTGAG+TGG - chr8_1:55107994-55108013 None:intergenic 25.0%
! CTCATCTAAATATCAATCAT+TGG - chr8_1:55108025-55108044 None:intergenic 25.0%
! AAATGGGTCTCAAATAAATT+TGG - chr8_1:55108053-55108072 None:intergenic 25.0%
! ATTTGTTCTCTTGATTATGT+GGG - chr8_1:55108348-55108367 None:intergenic 25.0%
!! AATTTGTTCTCTTGATTATG+TGG - chr8_1:55108349-55108368 None:intergenic 25.0%
!! ACTTTGTACTCTATTGTTTT+TGG + chr8_1:55108578-55108597 Msa1201830:three_prime_UTR 25.0%
! TGTTTTCTTTCTCTTACGAT+CGG - chr8_1:55106193-55106212 None:intergenic 30.0%
CATTGAAGTAAGAATAGCAA+CGG - chr8_1:55106406-55106425 None:intergenic 30.0%
! TATTGTGTTACTGTTATTGG+TGG + chr8_1:55106623-55106642 Msa1201830:intron 30.0%
TGTCAAAATAGAAGCTAAAG+TGG + chr8_1:55106825-55106844 Msa1201830:intron 30.0%
!! ATTGGTTTGGTTGTTATTTG+AGG + chr8_1:55107086-55107105 Msa1201830:intron 30.0%
!! TTGGTTTGGTTGTTATTTGA+GGG + chr8_1:55107087-55107106 Msa1201830:intron 30.0%
TTGTCATACGGATCTTAATT+TGG + chr8_1:55107169-55107188 Msa1201830:intron 30.0%
!! ATTTTGAACAATTTTAGCCC+TGG + chr8_1:55107276-55107295 Msa1201830:intron 30.0%
!! TTTTGAACAATTTTAGCCCT+GGG + chr8_1:55107277-55107296 Msa1201830:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr8_1:55107443-55107462 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr8_1:55107482-55107501 Msa1201830:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr8_1:55107550-55107569 None:intergenic 30.0%
GGAACTAGAATGTAATGTTT+AGG - chr8_1:55107610-55107629 None:intergenic 30.0%
TGAATTATTTAGCTACCCTT+TGG - chr8_1:55107642-55107661 None:intergenic 30.0%
!! TGTTGTGATGGAATTTTTGT+TGG + chr8_1:55107719-55107738 Msa1201830:intron 30.0%
TTAGGCAAATACAACATTGT+TGG + chr8_1:55107785-55107804 Msa1201830:intron 30.0%
GAATTCAAGGTACAACATAT+CGG - chr8_1:55107933-55107952 None:intergenic 30.0%
!! TACTAGCATTTCTTTTAGGA+AGG - chr8_1:55107967-55107986 None:intergenic 30.0%
TAATCAATCCTTTAGTAGAG+AGG - chr8_1:55108137-55108156 None:intergenic 30.0%
! AACTAAAATGGTCACTTTCT+TGG + chr8_1:55108217-55108236 Msa1201830:intron 30.0%
CGTATCATCAAAAAAACACA+TGG - chr8_1:55108489-55108508 None:intergenic 30.0%
! CACATACTGATTAAACACGA+AGG + chr8_1:55106312-55106331 Msa1201830:CDS 35.0%
ATGAAAGAGGATATCCTTTC+TGG + chr8_1:55106423-55106442 Msa1201830:CDS 35.0%
!! GTGTGAGTGTGTTTTTGAAT+TGG + chr8_1:55106549-55106568 Msa1201830:intron 35.0%
! AGGGAATTTTGTTAACCCTA+GGG + chr8_1:55106578-55106597 Msa1201830:intron 35.0%
AAACTCATTCAACTACCCTA+GGG - chr8_1:55106596-55106615 None:intergenic 35.0%
TAAACTCATTCAACTACCCT+AGG - chr8_1:55106597-55106616 None:intergenic 35.0%
TTAGTAGAAACTGTGAGCTA+AGG + chr8_1:55106695-55106714 Msa1201830:intron 35.0%
CAAAATAGAAGCTAAAGTGG+TGG + chr8_1:55106828-55106847 Msa1201830:intron 35.0%
AGTGACATTATACCTTAGGT+TGG - chr8_1:55106941-55106960 None:intergenic 35.0%
TAGCAGTGACATTATACCTT+AGG - chr8_1:55106945-55106964 None:intergenic 35.0%
ATAATGTCACTGCTATTGTC+AGG + chr8_1:55106950-55106969 Msa1201830:intron 35.0%
TGCAAAATGTTGTCACATTG+TGG + chr8_1:55106988-55107007 Msa1201830:intron 35.0%
ATCGCGTAAAATAGCAATCT+GGG - chr8_1:55107052-55107071 None:intergenic 35.0%
! CAAACCAATATTGTCGATTG+TGG - chr8_1:55107075-55107094 None:intergenic 35.0%
! CACAATCGACAATATTGGTT+TGG + chr8_1:55107073-55107092 Msa1201830:intron 35.0%
!! TTTGAACAATTTTAGCCCTG+GGG + chr8_1:55107278-55107297 Msa1201830:intron 35.0%
CTTAAGAAACATTACGGGAA+AGG - chr8_1:55107310-55107329 None:intergenic 35.0%
GGATGCTTAAGAAACATTAC+GGG - chr8_1:55107315-55107334 None:intergenic 35.0%
GGGATGCTTAAGAAACATTA+CGG - chr8_1:55107316-55107335 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr8_1:55107463-55107482 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr8_1:55107475-55107494 None:intergenic 35.0%
AGTCAAGTTAAAATAGGTCG+AGG - chr8_1:55107522-55107541 None:intergenic 35.0%
GAGGAGAGTCAAGTTAAAAT+AGG - chr8_1:55107528-55107547 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr8_1:55107547-55107566 None:intergenic 35.0%
TTGATCTACTCTTCTTACAG+CGG + chr8_1:55107551-55107570 Msa1201830:intron 35.0%
GACTGAACAATATGTTGTGA+TGG + chr8_1:55107707-55107726 Msa1201830:intron 35.0%
!! TGTAAGCTAGCATTAGCTTT+AGG + chr8_1:55107767-55107786 Msa1201830:intron 35.0%
TGAAAGATCAGCTGTATTGA+TGG - chr8_1:55107842-55107861 None:intergenic 35.0%
GGGTCTCAAATAAATTTGGT+GGG - chr8_1:55108049-55108068 None:intergenic 35.0%
TGGGTCTCAAATAAATTTGG+TGG - chr8_1:55108050-55108069 None:intergenic 35.0%
GCATAAGTTGCATCTTCAAA+AGG - chr8_1:55108278-55108297 None:intergenic 35.0%
TGGTGAAATTAGTGACATTG+TGG + chr8_1:55108307-55108326 Msa1201830:CDS 35.0%
ATGCTACAGTTCACTCTAAA+AGG - chr8_1:55108394-55108413 None:intergenic 35.0%
!!! TGTACTCTATTGTTTTTGGC+AGG + chr8_1:55108582-55108601 Msa1201830:three_prime_UTR 35.0%
CAAGGTAACGTGTTCATAAT+TGG - chr8_1:55108632-55108651 None:intergenic 35.0%
!! GTTCTAGAAGAAAAGCTTCG+TGG + chr8_1:55106334-55106353 Msa1201830:CDS 40.0%
!! TTCTTGATGACGTAACCTTC+TGG - chr8_1:55106366-55106385 None:intergenic 40.0%
! AGAGGATATCCTTTCTGGTA+AGG + chr8_1:55106428-55106447 Msa1201830:CDS 40.0%
!! CAAATTTGGCCTTACCAGAA+AGG - chr8_1:55106440-55106459 None:intergenic 40.0%
TTCTGGTAAGGCCAAATTTG+AGG + chr8_1:55106440-55106459 Msa1201830:CDS 40.0%
CGAAGCAAGATCCTCAAATT+TGG - chr8_1:55106454-55106473 None:intergenic 40.0%
AATTTGAGGATCTTGCTTCG+AGG + chr8_1:55106454-55106473 Msa1201830:CDS 40.0%
! GAGGGAATTTTGTTAACCCT+AGG + chr8_1:55106577-55106596 Msa1201830:intron 40.0%
CAGTCCACCTAAATTGACAT+CGG + chr8_1:55106862-55106881 Msa1201830:intron 40.0%
ATCCTCTCCGATGTCAATTT+AGG - chr8_1:55106872-55106891 None:intergenic 40.0%
!! CATTATACCTTAGGTTGGCT+TGG - chr8_1:55106936-55106955 None:intergenic 40.0%
GATCGCGTAAAATAGCAATC+TGG - chr8_1:55107053-55107072 None:intergenic 40.0%
CGATCCACAATCGACAATAT+TGG + chr8_1:55107068-55107087 Msa1201830:intron 40.0%
!! TTGAGGGATTCGTTTTTGCT+TGG + chr8_1:55107103-55107122 Msa1201830:intron 40.0%
!! TTGAACAATTTTAGCCCTGG+GGG + chr8_1:55107279-55107298 Msa1201830:intron 40.0%
! CAAGCTTTATCCCACTAAGT+GGG + chr8_1:55107393-55107412 Msa1201830:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG + chr8_1:55107394-55107413 Msa1201830:intron 40.0%
TAGTTCCATCCTTCTACCAA+AGG + chr8_1:55107623-55107642 Msa1201830:intron 40.0%
AGTTCCATCCTTCTACCAAA+GGG + chr8_1:55107624-55107643 Msa1201830:intron 40.0%
TTTAGCTACCCTTTGGTAGA+AGG - chr8_1:55107635-55107654 None:intergenic 40.0%
TTTGCGCGAAACTGAAAATG+TGG + chr8_1:55107863-55107882 Msa1201830:intron 40.0%
TTCAAGGTACAACATATCGG+AGG - chr8_1:55107930-55107949 None:intergenic 40.0%
TGCTAACACCTCTCTACTAA+AGG + chr8_1:55108126-55108145 Msa1201830:intron 40.0%
GCAACTTATGCTCTTCAAGT+TGG + chr8_1:55108287-55108306 Msa1201830:CDS 40.0%
GTAGTGATAGAATTCACGAC+AGG - chr8_1:55108610-55108629 None:intergenic 40.0%
TATAGATTGGACCGACATCG+AGG - chr8_1:55106112-55106131 None:intergenic 45.0%
AGTTAACTCGCGAATCTGCT+TGG - chr8_1:55106147-55106166 None:intergenic 45.0%
AACATCAATTTCGTCGGCGA+CGG + chr8_1:55106209-55106228 Msa1201830:five_prime_UTR 45.0%
GCGAAAATGTCTTCATCTCG+CGG + chr8_1:55106267-55106286 Msa1201830:exon 45.0%
AAAATGTCTTCATCTCGCGG+CGG + chr8_1:55106270-55106289 Msa1201830:exon 45.0%
! GATTGTAGCTCTGCTAAACG+CGG + chr8_1:55106483-55106502 Msa1201830:CDS 45.0%
ATCACATGTGTCAGTGTCAG+AGG + chr8_1:55106789-55106808 Msa1201830:intron 45.0%
TCACATGTGTCAGTGTCAGA+GGG + chr8_1:55106790-55106809 Msa1201830:intron 45.0%
CGATGTCAATTTAGGTGGAC+TGG - chr8_1:55106864-55106883 None:intergenic 45.0%
CTCTCCGATGTCAATTTAGG+TGG - chr8_1:55106869-55106888 None:intergenic 45.0%
CACCTAAATTGACATCGGAG+AGG + chr8_1:55106867-55106886 Msa1201830:intron 45.0%
!! TGGCTTGGTGGTATTGACTT+GGG - chr8_1:55106921-55106940 None:intergenic 45.0%
!! TTGGCTTGGTGGTATTGACT+TGG - chr8_1:55106922-55106941 None:intergenic 45.0%
AATACCACCAAGCCAACCTA+AGG + chr8_1:55106926-55106945 Msa1201830:intron 45.0%
!! TATACCTTAGGTTGGCTTGG+TGG - chr8_1:55106933-55106952 None:intergenic 45.0%
TTGTCACATTGTGGCTGTAG+TGG + chr8_1:55106997-55107016 Msa1201830:intron 45.0%
CCACTTAGTGGGATAAAGCT+TGG - chr8_1:55107395-55107414 None:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + chr8_1:55107392-55107411 Msa1201830:intron 45.0%
TTTATCCCACTAAGTGGGGT+CGG + chr8_1:55107398-55107417 Msa1201830:intron 45.0%
TCTTCTTACAGCGGCATCTA+CGG + chr8_1:55107560-55107579 Msa1201830:intron 45.0%
TGGACTTCTTGATGTTGCTG+TGG + chr8_1:55107739-55107758 Msa1201830:intron 45.0%
GTACAACATATCGGAGGTCT+AGG - chr8_1:55107924-55107943 None:intergenic 45.0%
! ATGGTCACTTTCTTGGCTGT+AGG + chr8_1:55108224-55108243 Msa1201830:intron 45.0%
! TTCTTGGCTGTAGGTCCTTT+TGG + chr8_1:55108233-55108252 Msa1201830:intron 45.0%
CTTCAAAAGGCTTCTGCATC+TGG - chr8_1:55108265-55108284 None:intergenic 45.0%
GACATTGTGGATAGTGACAG+TGG + chr8_1:55108320-55108339 Msa1201830:CDS 45.0%
GACCCAGATAACCTCGATGT+CGG + chr8_1:55106098-55106117 Msa1201830:five_prime_UTR 50.0%
GACCGACATCGAGGTTATCT+GGG - chr8_1:55106103-55106122 None:intergenic 50.0%
CGCGAGTTAACTGACAGTGA+CGG + chr8_1:55106155-55106174 Msa1201830:five_prime_UTR 50.0%
GCTTCGTGGAAAGATCCAGA+AGG + chr8_1:55106348-55106367 Msa1201830:CDS 50.0%
!! GTGGTATTGACTTGGGACCT+GGG - chr8_1:55106914-55106933 None:intergenic 50.0%
CTTCTTACAGCGGCATCTAC+GGG + chr8_1:55107561-55107580 Msa1201830:intron 50.0%
GCTACCCTTTGGTAGAAGGA+TGG - chr8_1:55107631-55107650 None:intergenic 50.0%
GGACCGACATCGAGGTTATC+TGG - chr8_1:55106104-55106123 None:intergenic 55.0%
ATCAATTTCGTCGGCGACGG+CGG + chr8_1:55106212-55106231 Msa1201830:five_prime_UTR 55.0%
! TGTAGCTCTGCTAAACGCGG+TGG + chr8_1:55106486-55106505 Msa1201830:CDS 55.0%
ATCGGAGAGGATCGATCTCG+AGG + chr8_1:55106880-55106899 Msa1201830:intron 55.0%
ATCTCGAGGAGCAAACTCCC+AGG + chr8_1:55106894-55106913 Msa1201830:intron 55.0%
!! GGTGGTATTGACTTGGGACC+TGG - chr8_1:55106915-55106934 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr8_1:55107406-55107425 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr8_1:55107407-55107426 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr8_1:55107406-55107425 Msa1201830:intron 55.0%
! GCTGTAGGTCCTTTTGGTCG+TGG + chr8_1:55108239-55108258 Msa1201830:intron 55.0%
TGCATCTGGCCACGACCAAA+AGG - chr8_1:55108251-55108270 None:intergenic 55.0%
GCTAAACGCGGTGGCGATCT+TGG + chr8_1:55106495-55106514 Msa1201830:CDS 60.0%
TTCATCTCGCGGCGGCGCTG+AGG + chr8_1:55106278-55106297 Msa1201830:CDS 70.0%
! TCGCGGCGGCGCTGAGGTTA+GGG + chr8_1:55106284-55106303 Msa1201830:CDS 70.0%
CGGGAAAGGCAGCACCCCCA+GGG - chr8_1:55107296-55107315 None:intergenic 70.0%
ACGGGAAAGGCAGCACCCCC+AGG - chr8_1:55107297-55107316 None:intergenic 70.0%
! CTCGCGGCGGCGCTGAGGTT+AGG + chr8_1:55106283-55106302 Msa1201830:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 55106094 55108658 55106094 ID=Msa1201830;Name=Msa1201830
chr8_1 mRNA 55106094 55108658 55106094 ID=Msa1201830-mRNA-1;Parent=Msa1201830;Name=Msa1201830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=179|1|1|1|1|1|2|288|122
chr8_1 exon 55106094 55106516 55106094 ID=Msa1201830-mRNA-1:exon:17818;Parent=Msa1201830-mRNA-1
chr8_1 exon 55108246 55108658 55108246 ID=Msa1201830-mRNA-1:exon:17819;Parent=Msa1201830-mRNA-1
chr8_1 five_prime_UTR 55106094 55106272 55106094 ID=Msa1201830-mRNA-1:five_prime_utr;Parent=Msa1201830-mRNA-1
chr8_1 CDS 55106273 55106516 55106273 ID=Msa1201830-mRNA-1:cds;Parent=Msa1201830-mRNA-1
chr8_1 CDS 55108246 55108370 55108246 ID=Msa1201830-mRNA-1:cds;Parent=Msa1201830-mRNA-1
chr8_1 three_prime_UTR 55108371 55108658 55108371 ID=Msa1201830-mRNA-1:three_prime_utr;Parent=Msa1201830-mRNA-1
Gene Sequence

>Msa1201830

ATGTCTTCATCTCGCGGCGGCGCTGAGGTTAGGGCTTCACACATACTGATTAAACACGAAGGTTCTAGAAGAAAAGCTTCGTGGAAAGATCCAGAAGGTTACGTCATCAAGAACACTACTCGTGAAAGTGCCGTTGCTATTCTTACTTCAATGAAAGAGGATATCCTTTCTGGTAAGGCCAAATTTGAGGATCTTGCTTCGAGGTATTCTGATTGTAGCTCTGCTAAACGCGGTGGCGATCTTGGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGATGCAACTTATGCTCTTCAAGTTGGTGAAATTAGTGACATTGTGGATAGTGACAGTGGATCCCACATAATCAAGAGAACAAATTGA

Protein sequence

>Msa1201830

MSSSRGGAEVRASHILIKHEGSRRKASWKDPEGYVIKNTTRESAVAILTSMKEDILSGKAKFEDLASRYSDCSSAKRGGDLGPFGRGQMQKPFEDATYALQVGEISDIVDSDSGSHIIKRTN*