AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0815860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815860 MtrunA17_Chr5g0434531 98.561 278 4 0 1 278 1 278 0.0 555
Msa0815860 MtrunA17_Chr3g0110311 64.769 281 91 3 1 278 1 276 2.23e-122 350
Msa0815860 MtrunA17_Chr8g0391511 50.575 261 122 2 23 276 27 287 3.66e-91 271
Msa0815860 MtrunA17_Chr7g0230381 42.308 260 142 7 1 256 14 269 5.26e-64 202
Msa0815860 MtrunA17_Chr1g0168311 31.119 286 180 8 6 276 6 289 3.08e-27 107
Msa0815860 MtrunA17_Chr1g0190321 31.959 291 170 14 8 278 10 292 6.37e-27 106
Msa0815860 MtrunA17_Chr1g0186151 28.975 283 179 7 13 276 18 297 1.74e-25 103
Msa0815860 MtrunA17_Chr7g0262011 27.465 284 182 8 5 277 85 355 5.19e-25 102
Msa0815860 MtrunA17_Chr2g0323011 28.571 231 154 2 8 227 9 239 4.54e-23 94.7
Msa0815860 MtrunA17_Chr2g0322981 27.966 236 158 5 3 227 5 239 3.71e-22 92.4
Msa0815860 MtrunA17_Chr1g0206331 26.718 262 146 6 7 237 11 257 3.73e-21 93.2
Msa0815860 MtrunA17_Chr5g0394001 28.929 280 167 8 13 269 15 285 1.51e-19 88.2
Msa0815860 MtrunA17_Chr3g0081001 26.360 239 154 5 1 226 10 239 2.05e-18 85.1
Msa0815860 MtrunA17_Chr6g0474871 28.980 245 147 8 4 226 3 242 2.27e-18 85.1
Msa0815860 MtrunA17_Chr1g0206351 28.111 217 137 4 28 227 34 248 2.52e-18 84.7
Msa0815860 MtrunA17_Chr3g0081031 25.630 238 158 4 6 228 21 254 1.02e-17 82.8
Msa0815860 MtrunA17_Chr8g0354351 23.469 294 202 5 3 277 5 294 6.34e-17 80.5
Msa0815860 MtrunA17_Chr6g0475001 26.667 240 157 6 6 226 5 244 8.38e-17 80.1
Msa0815860 MtrunA17_Chr6g0474901 26.009 223 125 3 33 227 28 238 1.75e-16 79.3
Msa0815860 MtrunA17_Chr6g0474971 26.538 260 169 7 4 246 3 257 1.75e-16 77.8
Msa0815860 MtrunA17_Chr6g0475201 25.726 241 160 4 5 226 3 243 1.85e-16 79.3
Msa0815860 MtrunA17_Chr1g0206361 25.379 264 174 8 23 266 31 291 2.22e-16 79.0
Msa0815860 MtrunA17_Chr8g0354341 24.312 218 152 3 22 226 22 239 2.75e-16 76.6
Msa0815860 MtrunA17_Chr3g0081011 25.616 203 138 3 34 226 39 238 4.66e-16 77.8
Msa0815860 MtrunA17_Chr6g0474861 26.047 215 141 6 2 204 6 214 1.17e-15 76.6
Msa0815860 MtrunA17_Chr3g0081051 24.138 232 164 3 9 228 5 236 1.36e-15 74.7
Msa0815860 MtrunA17_Chr8g0347571 25.000 236 167 3 1 226 1 236 1.48e-15 76.6
Msa0815860 MtrunA17_Chr7g0234231 26.768 198 122 5 46 227 42 232 2.55e-15 73.9
Msa0815860 MtrunA17_Chr1g0205771 22.549 306 208 8 1 278 7 311 3.30e-15 75.5
Msa0815860 MtrunA17_Chr8g0354421 27.354 223 146 5 3 211 28 248 3.89e-15 75.1
Msa0815860 MtrunA17_Chr1g0206291 25.620 242 156 6 7 227 21 259 4.44e-15 75.1
Msa0815860 MtrunA17_Chr6g0474811 25.820 244 157 6 6 227 5 246 3.63e-14 72.4
Msa0815860 MtrunA17_Chr7g0226901 28.511 235 144 9 6 228 10 232 3.83e-14 70.9
Msa0815860 MtrunA17_Chr5g0428591 26.341 205 132 4 38 227 39 239 4.70e-14 70.5
Msa0815860 MtrunA17_Chr1g0154351 26.639 244 151 9 7 228 10 247 5.42e-14 72.0
Msa0815860 MtrunA17_Chr1g0154311 27.111 225 138 6 26 229 29 248 8.68e-14 71.2
Msa0815860 MtrunA17_Chr5g0393981 27.749 191 109 3 38 207 113 295 1.58e-13 70.5
Msa0815860 MtrunA17_Chr5g0428571 26.214 206 133 4 38 228 40 241 2.80e-13 69.7
Msa0815860 MtrunA17_Chr8g0354411 26.214 206 124 5 27 211 28 226 4.02e-12 65.5
Msa0815860 MtrunA17_Chr8g0354431 25.110 227 148 8 2 211 5 226 5.58e-12 65.9
Msa0815860 MtrunA17_Chr3g0109411 25.446 224 151 5 17 227 18 238 8.37e-12 65.1
Msa0815860 MtrunA17_Chr6g0475111 25.103 243 165 3 1 226 4 246 1.01e-11 65.1
Msa0815860 MtrunA17_Chr5g0394021 24.161 298 185 8 1 273 10 291 1.98e-11 64.3
Msa0815860 MtrunA17_Chr6g0475121 25.424 236 155 4 7 226 14 244 2.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815860 AT5G37660.1 58.571 280 114 2 1 278 9 288 7.48e-109 317
Msa0815860 AT5G37660.2 58.423 279 114 2 1 277 9 287 6.08e-108 315
Msa0815860 AT2G01660.3 52.330 279 124 4 6 275 5 283 3.28e-98 290
Msa0815860 AT2G01660.1 52.330 279 124 4 6 275 5 283 4.27e-98 290
Msa0815860 AT2G01660.2 55.000 240 104 3 6 241 5 244 2.59e-90 269
Msa0815860 AT1G70690.1 43.617 282 146 4 7 275 10 291 5.43e-73 226
Msa0815860 AT3G60720.3 38.672 256 151 3 25 275 26 280 9.37e-58 186
Msa0815860 AT3G60720.1 39.216 255 145 4 25 274 26 275 1.65e-57 186
Msa0815860 AT3G60720.2 38.813 219 129 2 25 238 26 244 1.17e-50 167
Msa0815860 AT2G33330.1 27.304 293 194 5 1 276 10 300 5.90e-24 99.0
Msa0815860 AT1G04520.1 26.885 305 187 6 2 276 5 303 3.10e-23 97.1
Msa0815860 AT5G43980.1 28.102 274 175 6 26 278 27 299 4.82e-19 85.5
Msa0815860 AT5G48540.1 26.570 207 137 3 34 226 30 235 2.68e-18 82.8
Msa0815860 AT1G63550.1 26.570 207 135 4 38 229 42 246 6.21e-17 79.7
Msa0815860 AT3G58310.1 29.362 235 146 8 18 236 28 258 1.25e-16 77.8
Msa0815860 AT3G22060.1 30.000 220 133 7 23 226 29 243 9.99e-16 75.5
Msa0815860 AT1G63580.1 25.210 238 153 7 44 258 37 272 3.63e-15 73.9
Msa0815860 AT4G05200.2 25.523 239 163 4 4 227 23 261 7.27e-15 74.7
Msa0815860 AT4G05200.1 25.523 239 163 4 4 227 5 243 8.75e-15 74.7
Msa0815860 AT5G41290.1 23.695 249 156 7 3 228 6 243 3.39e-14 71.6
Msa0815860 AT5G40380.2 27.972 286 163 12 3 267 8 271 5.87e-14 72.0
Msa0815860 AT5G40380.3 28.671 286 161 13 3 267 8 271 6.02e-14 72.0
Msa0815860 AT5G41300.1 23.109 238 162 5 8 226 10 245 6.57e-14 70.9
Msa0815860 AT1G63570.3 25.630 238 150 6 9 228 13 241 7.30e-14 70.5
Msa0815860 AT1G63570.1 25.630 238 150 6 9 228 13 241 7.30e-14 70.5
Msa0815860 AT5G40380.1 28.671 286 161 13 3 267 8 271 7.95e-14 71.6
Msa0815860 AT1G63570.2 26.027 219 139 5 28 228 81 294 8.72e-14 70.9
Msa0815860 AT4G23280.1 26.800 250 152 9 18 242 18 261 1.26e-13 71.2
Msa0815860 AT4G23280.2 26.800 250 152 9 18 242 18 261 1.27e-13 71.2
Msa0815860 AT4G23280.3 26.800 250 152 9 18 242 18 261 1.47e-13 70.9
Msa0815860 AT4G23310.1 28.509 228 144 6 28 239 28 252 2.30e-13 70.5
Msa0815860 AT1G63600.1 22.807 228 156 4 17 226 26 251 2.95e-13 69.3
Msa0815860 AT4G23310.2 28.755 233 145 7 28 244 28 255 3.44e-13 70.1
Msa0815860 AT3G21970.1 27.197 239 141 8 7 221 13 242 5.08e-13 67.8
Msa0815860 AT1G61750.1 21.661 277 178 6 28 267 29 303 8.29e-13 68.2
Msa0815860 AT4G23270.3 27.239 268 160 10 1 242 1 259 3.83e-12 66.6
Msa0815860 AT4G23270.2 27.239 268 160 10 1 242 1 259 3.90e-12 66.6
Msa0815860 AT4G23270.1 27.239 268 160 10 1 242 1 259 3.90e-12 66.6
Msa0815860 AT4G23180.3 29.703 202 113 8 28 208 39 232 7.97e-12 65.5
Msa0815860 AT4G23180.2 29.703 202 113 8 28 208 39 232 9.75e-12 65.5
Msa0815860 AT4G23180.1 29.703 202 113 8 28 208 39 232 1.41e-11 65.1
Msa0815860 AT4G23160.3 25.238 210 120 7 22 205 619 817 6.14e-11 63.2
Msa0815860 AT4G23160.2 25.238 210 120 7 22 205 619 817 6.14e-11 63.2

Find 107 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATTTGAAAGAGAAAA+AGG 0.202045 5_3:-49575006 None:intergenic
TCTCTTGAGCCCATGGCTTC+TGG 0.211124 5_3:-49573578 None:intergenic
TGTACTGGGGATCTTAGTTT+TGG 0.219626 5_3:+49573680 Msa0815860:CDS
CCCGAACCACCAACCCTAAA+AGG 0.258817 5_3:-49573635 None:intergenic
ATTCTGATAAGGAAAGAAAA+AGG 0.268146 5_3:-49573169 None:intergenic
TGGATGGCTTGCAGGAAAAT+TGG 0.277770 5_3:+49574592 Msa0815860:intron
TTTCATTCTAAGCAAATCAT+AGG 0.285670 5_3:+49573023 Msa0815860:five_prime_UTR
CTTTCTTGAGCAAGATTTGT+AGG 0.299010 5_3:+49574690 Msa0815860:CDS
CTTGGTGGGCTTGTGGGCTT+AGG 0.300238 5_3:+49573608 Msa0815860:CDS
CGTGGTGTTGCCCAGTGTAC+TGG 0.317322 5_3:+49573665 Msa0815860:CDS
GCTGTGCTTGGTGGGCTTGT+GGG 0.350767 5_3:+49573602 Msa0815860:CDS
GATTGTGGTACTGCAGATTA+TGG 0.358387 5_3:+49573749 Msa0815860:CDS
GCACGCGCTGTCACACGTGC+TGG 0.363096 5_3:+49573419 Msa0815860:CDS
AAGAGATTTGCATTAATCAT+TGG 0.369856 5_3:+49574629 Msa0815860:CDS
GAATGAAAACTTTGAACAAT+GGG 0.370147 5_3:-49573008 None:intergenic
GATTATGGAGATTTGTTCTT+GGG 0.375248 5_3:+49573764 Msa0815860:CDS
AGCAATGAGAATAACAAGTA+TGG 0.392517 5_3:-49574669 None:intergenic
TTTGACTCGTAGGGTGAGTT+TGG 0.395292 5_3:-49573245 None:intergenic
ACCACAAACCTCTACCTATA+CGG 0.397734 5_3:+49573197 Msa0815860:CDS
TGCTGTGCTTGGTGGGCTTG+TGG 0.401298 5_3:+49573601 Msa0815860:CDS
GGTGGGCTTGTGGGCTTAGG+TGG 0.405467 5_3:+49573611 Msa0815860:CDS
TTAATCATTGGTTTATTAGC+AGG 0.406034 5_3:+49574641 Msa0815860:CDS
TCAAGAGATGCTGTGCTTGG+TGG 0.408146 5_3:+49573593 Msa0815860:CDS
GGTCGCCACGGCATTGATAT+AGG 0.413623 5_3:-49573367 None:intergenic
GGTCCAGCTCGACGGTTGTT+TGG 0.415998 5_3:+49573472 Msa0815860:CDS
GGCCATAGATTATGTCTTGT+TGG 0.417754 5_3:-49573346 None:intergenic
AGATTATGGAGATTTGTTCT+TGG 0.419653 5_3:+49573763 Msa0815860:CDS
CAAGAGATGCTGTGCTTGGT+GGG 0.419763 5_3:+49573594 Msa0815860:CDS
GTGGGCTTGTGGGCTTAGGT+GGG 0.426219 5_3:+49573612 Msa0815860:CDS
GCCATAGATTATGTCTTGTT+GGG 0.429320 5_3:-49573345 None:intergenic
TAGGGTTGGTGGTTCGGGTA+TGG 0.430373 5_3:+49573640 Msa0815860:CDS
AGATTAAAGACCTATGAGTA+TGG 0.432343 5_3:-49572984 None:intergenic
AATAACACAACTTTGTAAAG+TGG 0.432363 5_3:-49575163 None:intergenic
TGGGGCCCATGATACGTCTA+AGG 0.432532 5_3:+49573814 Msa0815860:CDS
TTTAAAGTTGAATTCAAAAG+AGG 0.444463 5_3:+49575023 Msa0815860:three_prime_UTR
CACGCGCTGTCACACGTGCT+GGG 0.445092 5_3:+49573420 Msa0815860:CDS
ACCCAACAAGACATAATCTA+TGG 0.445749 5_3:+49573344 Msa0815860:CDS
TGTGGTTGATGATTCTGATA+AGG 0.461928 5_3:-49573180 None:intergenic
GTGGTGTTGCCCAGTGTACT+GGG 0.465182 5_3:+49573666 Msa0815860:CDS
TACAACAACTTCACCGTCCT+AGG 0.469752 5_3:+49573317 Msa0815860:CDS
GCAGGAAAATTGGGTATAGT+AGG 0.470565 5_3:+49574602 Msa0815860:intron
CATGGGCCTTAGACGTATCA+TGG 0.471929 5_3:-49573820 None:intergenic
GGCTCAAGAGATGCTGTGCT+TGG 0.472019 5_3:+49573590 Msa0815860:CDS
GTGAGGTGAGGAGTGAATTG+AGG 0.473079 5_3:-49573268 None:intergenic
GGATGGCTTGCAGGAAAATT+GGG 0.474228 5_3:+49574593 Msa0815860:intron
TATGTTATATTATATGCATA+TGG 0.475621 5_3:-49573063 None:intergenic
TCGCGACTCGTGCGGAGGCA+CGG 0.481840 5_3:+49573451 Msa0815860:CDS
TGTCTTGTTGGGTGGACCCT+AGG 0.483605 5_3:-49573334 None:intergenic
AGAATGAAAACTTTGAACAA+TGG 0.493470 5_3:-49573009 None:intergenic
TGAATTGAGGTTTGACTCGT+AGG 0.499158 5_3:-49573255 None:intergenic
AGAACATCATGAAGCAAAAG+AGG 0.499250 5_3:-49574969 None:intergenic
CCGTGGCGACCTCGCTATGC+CGG 0.500432 5_3:+49573379 Msa0815860:CDS
TATGAGTATGGAACTGAAGT+TGG 0.501955 5_3:-49572972 None:intergenic
CACAGCATCTCTTGAGCCCA+TGG 0.506789 5_3:-49573585 None:intergenic
GTTGTGTGCAACCACCGTAT+AGG 0.510615 5_3:-49573211 None:intergenic
AACTAAGATCCCCAGTACAC+TGG 0.510980 5_3:-49573676 None:intergenic
TAGGACGGTGAAGTTGTTGT+AGG 0.515242 5_3:-49573315 None:intergenic
TCACCAAACAACCGTCGAGC+TGG 0.516521 5_3:-49573475 None:intergenic
TTCATTCTAAGCAAATCATA+GGG 0.521867 5_3:+49573024 Msa0815860:five_prime_UTR
GGAAAGCAGCTAGAATCTCT+TGG 0.527670 5_3:-49575137 None:intergenic
ATAGATTATGTCTTGTTGGG+TGG 0.527972 5_3:-49573342 None:intergenic
GGGCTATAATCCAGAAGCCA+TGG 0.539733 5_3:+49573568 Msa0815860:CDS
GGCACAAAAGCAACTCATAG+AGG 0.545510 5_3:-49574948 None:intergenic
AACTTCAGTTCCATACTCAT+AGG 0.552041 5_3:+49572974 Msa0815860:five_prime_UTR
ACCGTATAGGTAGAGGTTTG+TGG 0.553030 5_3:-49573198 None:intergenic
ACTAAGATCCCCAGTACACT+GGG 0.557663 5_3:-49573675 None:intergenic
GCGACACAGGAGGCACAGTC+CGG 0.560545 5_3:-49573398 None:intergenic
TGTGACAGCGCGTGCGACAC+AGG 0.562753 5_3:-49573411 None:intergenic
GGCTATAATCCAGAAGCCAT+GGG 0.566857 5_3:+49573569 Msa0815860:CDS
CACAACTTTGTAAAGTGGAA+AGG 0.570798 5_3:-49575158 None:intergenic
ACTGATCAAATCTCACCGTA+TGG 0.572747 5_3:+49574921 Msa0815860:three_prime_UTR
AGACGTATCATGGGCCCCAC+CGG 0.577254 5_3:-49573810 None:intergenic
TGCAACCACCGTATAGGTAG+AGG 0.578158 5_3:-49573205 None:intergenic
ATGCAAGATATTCTACCGGT+GGG 0.580075 5_3:+49573795 Msa0815860:CDS
GAGGACTTTGAACCTTGAAG+AGG 0.580077 5_3:+49575042 Msa0815860:three_prime_UTR
GTGTTGTAGAAGCGATCGGA+CGG 0.581568 5_3:+49573717 Msa0815860:CDS
TACGGTGAGATTTGATCAGT+GGG 0.585780 5_3:-49574918 None:intergenic
ATTAAGTTTGTGACGCTGAG+TGG 0.589450 5_3:+49574891 Msa0815860:three_prime_UTR
GAATTGAGGTTTGACTCGTA+GGG 0.593749 5_3:-49573254 None:intergenic
ACAACAACTTCACCGTCCTA+GGG 0.596633 5_3:+49573318 Msa0815860:CDS
GGAGGCACGGTCCAGCTCGA+CGG 0.596985 5_3:+49573464 Msa0815860:CDS
GGTGGTTCGGGTATGGTACG+TGG 0.597946 5_3:+49573647 Msa0815860:CDS
AGCAAGATTTGTAGGAGACA+AGG 0.603122 5_3:+49574698 Msa0815860:CDS
ACGCGCTGTCACACGTGCTG+GGG 0.608382 5_3:+49573421 Msa0815860:CDS
CCGGCATAGCGAGGTCGCCA+CGG 0.614398 5_3:-49573379 None:intergenic
ATGTGTCGCGACTCGTGCGG+AGG 0.615055 5_3:+49573446 Msa0815860:CDS
GGCTTCTGGATTATAGCCCA+CGG 0.615132 5_3:-49573564 None:intergenic
GGACGGTTGAAAAGTGATTG+TGG 0.615271 5_3:+49573734 Msa0815860:CDS
TGTTATGCAAGATATTCTAC+CGG 0.616220 5_3:+49573791 Msa0815860:CDS
AGGCACAGTCCGGCATAGCG+AGG 0.619370 5_3:-49573388 None:intergenic
GATTGTGTTGTAGAAGCGAT+CGG 0.619387 5_3:+49573713 Msa0815860:CDS
ACTCATAGAGGAAGTCCATA+CGG 0.623640 5_3:-49574936 None:intergenic
TATGCAAGATATTCTACCGG+TGG 0.627330 5_3:+49573794 Msa0815860:CDS
CATGATACGTCTAAGGCCCA+TGG 0.629745 5_3:+49573821 Msa0815860:CDS
ATGGGCCTTAGACGTATCAT+GGG 0.630265 5_3:-49573819 None:intergenic
TCTGGATTATAGCCCACGGA+AGG 0.644583 5_3:-49573560 None:intergenic
ATACGGTGAGATTTGATCAG+TGG 0.646510 5_3:-49574919 None:intergenic
TGCAAGATATTCTACCGGTG+GGG 0.653008 5_3:+49573796 Msa0815860:CDS
AATGAAAACTTTGAACAATG+GGG 0.657828 5_3:-49573007 None:intergenic
TTGTTGGGTGGACCCTAGGA+CGG 0.669929 5_3:-49573330 None:intergenic
CTGAGTTGACTAGTGAGGTG+AGG 0.674733 5_3:-49573280 None:intergenic
GACATGTGTCGCGACTCGTG+CGG 0.678683 5_3:+49573443 Msa0815860:CDS
TATGGCCTATATCAATGCCG+TGG 0.684424 5_3:+49573362 Msa0815860:CDS
GACAGCGCGTGCGACACAGG+AGG 0.694407 5_3:-49573408 None:intergenic
ACAAACCTCTACCTATACGG+TGG 0.712151 5_3:+49573200 Msa0815860:CDS
TGGTGTTGCCCAGTGTACTG+GGG 0.727512 5_3:+49573667 Msa0815860:CDS
TGTTGCTGAGTTGACTAGTG+AGG 0.747592 5_3:-49573285 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAATTTTGCATTATT+TGG + chr5_3:49575249-49575268 Msa0815860:three_prime_UTR 10.0%
!! TATGTTATATTATATGCATA+TGG - chr5_3:49573066-49573085 None:intergenic 15.0%
!! AATGTTTACAAATTACAAAT+TGG - chr5_3:49574125-49574144 None:intergenic 15.0%
!! TGTTGAAATAATAAAACATT+GGG - chr5_3:49574201-49574220 None:intergenic 15.0%
!! ATGTTGAAATAATAAAACAT+TGG - chr5_3:49574202-49574221 None:intergenic 15.0%
!! TATTTACTTGTGAAAATATT+AGG + chr5_3:49574279-49574298 Msa0815860:intron 15.0%
!! ATTTACTTGTGAAAATATTA+GGG + chr5_3:49574280-49574299 Msa0815860:intron 15.0%
!! TGAATTGATTATATTAGTTA+AGG - chr5_3:49574771-49574790 None:intergenic 15.0%
!! AAATTAAAACATATAACCAT+TGG + chr5_3:49574800-49574819 Msa0815860:intron 15.0%
!! TTTAAATTTGAAAGAGAAAA+AGG - chr5_3:49575009-49575028 None:intergenic 15.0%
!! TATGTTATATTATATGCATA+TGG - chr5_3:49573066-49573085 None:intergenic 15.0%
!! AATGTTTACAAATTACAAAT+TGG - chr5_3:49574125-49574144 None:intergenic 15.0%
!! TGTTGAAATAATAAAACATT+GGG - chr5_3:49574201-49574220 None:intergenic 15.0%
!! ATGTTGAAATAATAAAACAT+TGG - chr5_3:49574202-49574221 None:intergenic 15.0%
!! TATTTACTTGTGAAAATATT+AGG + chr5_3:49574279-49574298 Msa0815860:intron 15.0%
!! ATTTACTTGTGAAAATATTA+GGG + chr5_3:49574280-49574299 Msa0815860:intron 15.0%
!! TGAATTGATTATATTAGTTA+AGG - chr5_3:49574771-49574790 None:intergenic 15.0%
!! AAATTAAAACATATAACCAT+TGG + chr5_3:49574800-49574819 Msa0815860:intron 15.0%
!! TTTAAATTTGAAAGAGAAAA+AGG - chr5_3:49575009-49575028 None:intergenic 15.0%
!!! CTACTTCTTTTTTAATCAAA+AGG + chr5_3:49573887-49573906 Msa0815860:intron 20.0%
!!! ATGTTTTCTTTTACTTTGTT+AGG + chr5_3:49574060-49574079 Msa0815860:intron 20.0%
!!! TGTTTTCTTTTACTTTGTTA+GGG + chr5_3:49574061-49574080 Msa0815860:intron 20.0%
!!! TTTTTTCTTACAAATCTCTT+TGG - chr5_3:49574228-49574247 None:intergenic 20.0%
!! AGAGATTTGTAAGAAAAAAA+AGG + chr5_3:49574229-49574248 Msa0815860:intron 20.0%
!!! TTTAAAGTTGAATTCAAAAG+AGG + chr5_3:49575023-49575042 Msa0815860:three_prime_UTR 20.0%
!! TTTGAATACAAAAAGAAAAG+AGG + chr5_3:49575100-49575119 Msa0815860:three_prime_UTR 20.0%
!!! CTACTTCTTTTTTAATCAAA+AGG + chr5_3:49573887-49573906 Msa0815860:intron 20.0%
!!! ATGTTTTCTTTTACTTTGTT+AGG + chr5_3:49574060-49574079 Msa0815860:intron 20.0%
!!! TGTTTTCTTTTACTTTGTTA+GGG + chr5_3:49574061-49574080 Msa0815860:intron 20.0%
!!! TTTTTTCTTACAAATCTCTT+TGG - chr5_3:49574228-49574247 None:intergenic 20.0%
!! AGAGATTTGTAAGAAAAAAA+AGG + chr5_3:49574229-49574248 Msa0815860:intron 20.0%
!!! TTTAAAGTTGAATTCAAAAG+AGG + chr5_3:49575023-49575042 Msa0815860:three_prime_UTR 20.0%
!! TTTGAATACAAAAAGAAAAG+AGG + chr5_3:49575100-49575119 Msa0815860:three_prime_UTR 20.0%
! AATGAAAACTTTGAACAATG+GGG - chr5_3:49573010-49573029 None:intergenic 25.0%
! GAATGAAAACTTTGAACAAT+GGG - chr5_3:49573011-49573030 None:intergenic 25.0%
! AGAATGAAAACTTTGAACAA+TGG - chr5_3:49573012-49573031 None:intergenic 25.0%
! TTTCATTCTAAGCAAATCAT+AGG + chr5_3:49573023-49573042 Msa0815860:five_prime_UTR 25.0%
! TTCATTCTAAGCAAATCATA+GGG + chr5_3:49573024-49573043 Msa0815860:five_prime_UTR 25.0%
!!! CCATTTTTTGTTGTTGTTAT+TGG - chr5_3:49573112-49573131 None:intergenic 25.0%
! CCAATAACAACAACAAAAAA+TGG + chr5_3:49573109-49573128 Msa0815860:exon 25.0%
! TTCTGATAAGGAAAGAAAAA+GGG - chr5_3:49573171-49573190 None:intergenic 25.0%
! ATTCTGATAAGGAAAGAAAA+AGG - chr5_3:49573172-49573191 None:intergenic 25.0%
!!! AATGTTTTGTTGAAAAAGTG+TGG + chr5_3:49573536-49573555 Msa0815860:CDS 25.0%
!!! ATGTTTTGTTGAAAAAGTGT+GGG + chr5_3:49573537-49573556 Msa0815860:CDS 25.0%
! AGGAATTAATTGAAGAGTAA+TGG + chr5_3:49573907-49573926 Msa0815860:intron 25.0%
!!! TTTCAAGTATGTTTTTCTTC+CGG + chr5_3:49574020-49574039 Msa0815860:intron 25.0%
! TTACAAATTACAAATTGGCA+TGG - chr5_3:49574120-49574139 None:intergenic 25.0%
!! GTAATTTGTAAACATTGACT+TGG + chr5_3:49574129-49574148 Msa0815860:intron 25.0%
! ACATGTGATCAAAATTCAAA+GGG - chr5_3:49574546-49574565 None:intergenic 25.0%
!!! AATTACCTGACTTATTTTGT+TGG + chr5_3:49574572-49574591 Msa0815860:intron 25.0%
! AAGAGATTTGCATTAATCAT+TGG + chr5_3:49574629-49574648 Msa0815860:CDS 25.0%
!!! TTAATCATTGGTTTATTAGC+AGG + chr5_3:49574641-49574660 Msa0815860:CDS 25.0%
!! ATTTAACTTATTTACCTGCA+CGG - chr5_3:49574873-49574892 None:intergenic 25.0%
! AATAACACAACTTTGTAAAG+TGG - chr5_3:49575166-49575185 None:intergenic 25.0%
! AATGAAAACTTTGAACAATG+GGG - chr5_3:49573010-49573029 None:intergenic 25.0%
! GAATGAAAACTTTGAACAAT+GGG - chr5_3:49573011-49573030 None:intergenic 25.0%
! AGAATGAAAACTTTGAACAA+TGG - chr5_3:49573012-49573031 None:intergenic 25.0%
! TTTCATTCTAAGCAAATCAT+AGG + chr5_3:49573023-49573042 Msa0815860:five_prime_UTR 25.0%
! TTCATTCTAAGCAAATCATA+GGG + chr5_3:49573024-49573043 Msa0815860:five_prime_UTR 25.0%
!!! CCATTTTTTGTTGTTGTTAT+TGG - chr5_3:49573112-49573131 None:intergenic 25.0%
! CCAATAACAACAACAAAAAA+TGG + chr5_3:49573109-49573128 Msa0815860:exon 25.0%
! TTCTGATAAGGAAAGAAAAA+GGG - chr5_3:49573171-49573190 None:intergenic 25.0%
! ATTCTGATAAGGAAAGAAAA+AGG - chr5_3:49573172-49573191 None:intergenic 25.0%
!!! AATGTTTTGTTGAAAAAGTG+TGG + chr5_3:49573536-49573555 Msa0815860:CDS 25.0%
!!! ATGTTTTGTTGAAAAAGTGT+GGG + chr5_3:49573537-49573556 Msa0815860:CDS 25.0%
! AGGAATTAATTGAAGAGTAA+TGG + chr5_3:49573907-49573926 Msa0815860:intron 25.0%
!!! TTTCAAGTATGTTTTTCTTC+CGG + chr5_3:49574020-49574039 Msa0815860:intron 25.0%
! TTACAAATTACAAATTGGCA+TGG - chr5_3:49574120-49574139 None:intergenic 25.0%
!! GTAATTTGTAAACATTGACT+TGG + chr5_3:49574129-49574148 Msa0815860:intron 25.0%
! ACATGTGATCAAAATTCAAA+GGG - chr5_3:49574546-49574565 None:intergenic 25.0%
!!! AATTACCTGACTTATTTTGT+TGG + chr5_3:49574572-49574591 Msa0815860:intron 25.0%
! AAGAGATTTGCATTAATCAT+TGG + chr5_3:49574629-49574648 Msa0815860:CDS 25.0%
!!! TTAATCATTGGTTTATTAGC+AGG + chr5_3:49574641-49574660 Msa0815860:CDS 25.0%
!! ATTTAACTTATTTACCTGCA+CGG - chr5_3:49574873-49574892 None:intergenic 25.0%
! AATAACACAACTTTGTAAAG+TGG - chr5_3:49575166-49575185 None:intergenic 25.0%
AGATTAAAGACCTATGAGTA+TGG - chr5_3:49572987-49573006 None:intergenic 30.0%
!!! TATGACAATGCTACTTTTCT+AGG + chr5_3:49573500-49573519 Msa0815860:CDS 30.0%
! AGATTATGGAGATTTGTTCT+TGG + chr5_3:49573763-49573782 Msa0815860:CDS 30.0%
! GATTATGGAGATTTGTTCTT+GGG + chr5_3:49573764-49573783 Msa0815860:CDS 30.0%
TGTTATGCAAGATATTCTAC+CGG + chr5_3:49573791-49573810 Msa0815860:CDS 30.0%
! AATTGAAGAGTAATGGAGAT+TGG + chr5_3:49573914-49573933 Msa0815860:intron 30.0%
! ATTGAAGAGTAATGGAGATT+GGG + chr5_3:49573915-49573934 Msa0815860:intron 30.0%
!!! ATGACTTTTTTTCTTCTGAC+CGG - chr5_3:49574042-49574061 None:intergenic 30.0%
CACATGTGATCAAAATTCAA+AGG - chr5_3:49574547-49574566 None:intergenic 30.0%
!! CTTTGAATTTTGATCACATG+TGG + chr5_3:49574545-49574564 Msa0815860:intron 30.0%
AGCAATGAGAATAACAAGTA+TGG - chr5_3:49574672-49574691 None:intergenic 30.0%
CAAGATATTGCTTAATCCAA+TGG - chr5_3:49574819-49574838 None:intergenic 30.0%
!!! TCTTTTTTGTATCCTCTTCA+AGG - chr5_3:49575057-49575076 None:intergenic 30.0%
ACAAAAAAGAATGTGCAAGA+TGG + chr5_3:49575067-49575086 Msa0815860:three_prime_UTR 30.0%
CAAAAAAGAATGTGCAAGAT+GGG + chr5_3:49575068-49575087 Msa0815860:three_prime_UTR 30.0%
AAAAAAGAATGTGCAAGATG+GGG + chr5_3:49575069-49575088 Msa0815860:three_prime_UTR 30.0%
AGATTAAAGACCTATGAGTA+TGG - chr5_3:49572987-49573006 None:intergenic 30.0%
!!! TATGACAATGCTACTTTTCT+AGG + chr5_3:49573500-49573519 Msa0815860:CDS 30.0%
! AGATTATGGAGATTTGTTCT+TGG + chr5_3:49573763-49573782 Msa0815860:CDS 30.0%
! GATTATGGAGATTTGTTCTT+GGG + chr5_3:49573764-49573783 Msa0815860:CDS 30.0%
TGTTATGCAAGATATTCTAC+CGG + chr5_3:49573791-49573810 Msa0815860:CDS 30.0%
! AATTGAAGAGTAATGGAGAT+TGG + chr5_3:49573914-49573933 Msa0815860:intron 30.0%
! ATTGAAGAGTAATGGAGATT+GGG + chr5_3:49573915-49573934 Msa0815860:intron 30.0%
!!! ATGACTTTTTTTCTTCTGAC+CGG - chr5_3:49574042-49574061 None:intergenic 30.0%
CACATGTGATCAAAATTCAA+AGG - chr5_3:49574547-49574566 None:intergenic 30.0%
!! CTTTGAATTTTGATCACATG+TGG + chr5_3:49574545-49574564 Msa0815860:intron 30.0%
AGCAATGAGAATAACAAGTA+TGG - chr5_3:49574672-49574691 None:intergenic 30.0%
CAAGATATTGCTTAATCCAA+TGG - chr5_3:49574819-49574838 None:intergenic 30.0%
!!! TCTTTTTTGTATCCTCTTCA+AGG - chr5_3:49575057-49575076 None:intergenic 30.0%
ACAAAAAAGAATGTGCAAGA+TGG + chr5_3:49575067-49575086 Msa0815860:three_prime_UTR 30.0%
CAAAAAAGAATGTGCAAGAT+GGG + chr5_3:49575068-49575087 Msa0815860:three_prime_UTR 30.0%
AAAAAAGAATGTGCAAGATG+GGG + chr5_3:49575069-49575088 Msa0815860:three_prime_UTR 30.0%
TATGAGTATGGAACTGAAGT+TGG - chr5_3:49572975-49572994 None:intergenic 35.0%
AACTTCAGTTCCATACTCAT+AGG + chr5_3:49572974-49572993 Msa0815860:five_prime_UTR 35.0%
TGATAAGGAAAGAAAAAGGG+TGG - chr5_3:49573168-49573187 None:intergenic 35.0%
!! TGTGGTTGATGATTCTGATA+AGG - chr5_3:49573183-49573202 None:intergenic 35.0%
! ATAGATTATGTCTTGTTGGG+TGG - chr5_3:49573345-49573364 None:intergenic 35.0%
ACCCAACAAGACATAATCTA+TGG + chr5_3:49573344-49573363 Msa0815860:CDS 35.0%
! GCCATAGATTATGTCTTGTT+GGG - chr5_3:49573348-49573367 None:intergenic 35.0%
AAAAGAAGTAGAAGCAGCAA+AGG - chr5_3:49573878-49573897 None:intergenic 35.0%
!! AAACATTGACTTGGAGAATG+TGG + chr5_3:49574138-49574157 Msa0815860:intron 35.0%
!!! ACCTGACTTATTTTGTTGGA+TGG + chr5_3:49574576-49574595 Msa0815860:intron 35.0%
CTTTCTTGAGCAAGATTTGT+AGG + chr5_3:49574690-49574709 Msa0815860:CDS 35.0%
GAGACAAGGTAAGTAGTATT+AGG + chr5_3:49574712-49574731 Msa0815860:intron 35.0%
AGAACATCATGAAGCAAAAG+AGG - chr5_3:49574972-49574991 None:intergenic 35.0%
CACAACTTTGTAAAGTGGAA+AGG - chr5_3:49575161-49575180 None:intergenic 35.0%
TATGAGTATGGAACTGAAGT+TGG - chr5_3:49572975-49572994 None:intergenic 35.0%
AACTTCAGTTCCATACTCAT+AGG + chr5_3:49572974-49572993 Msa0815860:five_prime_UTR 35.0%
TGATAAGGAAAGAAAAAGGG+TGG - chr5_3:49573168-49573187 None:intergenic 35.0%
!! TGTGGTTGATGATTCTGATA+AGG - chr5_3:49573183-49573202 None:intergenic 35.0%
! ATAGATTATGTCTTGTTGGG+TGG - chr5_3:49573345-49573364 None:intergenic 35.0%
ACCCAACAAGACATAATCTA+TGG + chr5_3:49573344-49573363 Msa0815860:CDS 35.0%
! GCCATAGATTATGTCTTGTT+GGG - chr5_3:49573348-49573367 None:intergenic 35.0%
AAAAGAAGTAGAAGCAGCAA+AGG - chr5_3:49573878-49573897 None:intergenic 35.0%
!! AAACATTGACTTGGAGAATG+TGG + chr5_3:49574138-49574157 Msa0815860:intron 35.0%
!!! ACCTGACTTATTTTGTTGGA+TGG + chr5_3:49574576-49574595 Msa0815860:intron 35.0%
CTTTCTTGAGCAAGATTTGT+AGG + chr5_3:49574690-49574709 Msa0815860:CDS 35.0%
GAGACAAGGTAAGTAGTATT+AGG + chr5_3:49574712-49574731 Msa0815860:intron 35.0%
AGAACATCATGAAGCAAAAG+AGG - chr5_3:49574972-49574991 None:intergenic 35.0%
CACAACTTTGTAAAGTGGAA+AGG - chr5_3:49575161-49575180 None:intergenic 35.0%
ACCACAAACCTCTACCTATA+CGG + chr5_3:49573197-49573216 Msa0815860:CDS 40.0%
! GAATTGAGGTTTGACTCGTA+GGG - chr5_3:49573257-49573276 None:intergenic 40.0%
! TGAATTGAGGTTTGACTCGT+AGG - chr5_3:49573258-49573277 None:intergenic 40.0%
GGCCATAGATTATGTCTTGT+TGG - chr5_3:49573349-49573368 None:intergenic 40.0%
!!! CAATGCTACTTTTCTAGGAG+TGG + chr5_3:49573505-49573524 Msa0815860:CDS 40.0%
! TGTACTGGGGATCTTAGTTT+TGG + chr5_3:49573680-49573699 Msa0815860:CDS 40.0%
!! GTACTGGGGATCTTAGTTTT+GGG + chr5_3:49573681-49573700 Msa0815860:CDS 40.0%
!!! TACTGGGGATCTTAGTTTTG+GGG + chr5_3:49573682-49573701 Msa0815860:CDS 40.0%
GATTGTGTTGTAGAAGCGAT+CGG + chr5_3:49573713-49573732 Msa0815860:CDS 40.0%
GATTGTGGTACTGCAGATTA+TGG + chr5_3:49573749-49573768 Msa0815860:CDS 40.0%
TATGCAAGATATTCTACCGG+TGG + chr5_3:49573794-49573813 Msa0815860:CDS 40.0%
ATGCAAGATATTCTACCGGT+GGG + chr5_3:49573795-49573814 Msa0815860:CDS 40.0%
CATGAGAAAGAACCCAAGAT+GGG - chr5_3:49573852-49573871 None:intergenic 40.0%
ACATGAGAAAGAACCCAAGA+TGG - chr5_3:49573853-49573872 None:intergenic 40.0%
!!! ACAGCGTTTGTCGTTTTTTC+AGG + chr5_3:49574085-49574104 Msa0815860:intron 40.0%
GCCATCCAACAAAATAAGTC+AGG - chr5_3:49574580-49574599 None:intergenic 40.0%
!! TATTTTGTTGGATGGCTTGC+AGG + chr5_3:49574584-49574603 Msa0815860:intron 40.0%
GCAGGAAAATTGGGTATAGT+AGG + chr5_3:49574602-49574621 Msa0815860:intron 40.0%
AGCAAGATTTGTAGGAGACA+AGG + chr5_3:49574698-49574717 Msa0815860:CDS 40.0%
!!! CTTGTATCTTTTTTCCGTGC+AGG + chr5_3:49574856-49574875 Msa0815860:intron 40.0%
ATTAAGTTTGTGACGCTGAG+TGG + chr5_3:49574891-49574910 Msa0815860:three_prime_UTR 40.0%
TACGGTGAGATTTGATCAGT+GGG - chr5_3:49574921-49574940 None:intergenic 40.0%
ATACGGTGAGATTTGATCAG+TGG - chr5_3:49574922-49574941 None:intergenic 40.0%
ACTGATCAAATCTCACCGTA+TGG + chr5_3:49574921-49574940 Msa0815860:three_prime_UTR 40.0%
ACTCATAGAGGAAGTCCATA+CGG - chr5_3:49574939-49574958 None:intergenic 40.0%
ACCACAAACCTCTACCTATA+CGG + chr5_3:49573197-49573216 Msa0815860:CDS 40.0%
! GAATTGAGGTTTGACTCGTA+GGG - chr5_3:49573257-49573276 None:intergenic 40.0%
! TGAATTGAGGTTTGACTCGT+AGG - chr5_3:49573258-49573277 None:intergenic 40.0%
GGCCATAGATTATGTCTTGT+TGG - chr5_3:49573349-49573368 None:intergenic 40.0%
!!! CAATGCTACTTTTCTAGGAG+TGG + chr5_3:49573505-49573524 Msa0815860:CDS 40.0%
! TGTACTGGGGATCTTAGTTT+TGG + chr5_3:49573680-49573699 Msa0815860:CDS 40.0%
!! GTACTGGGGATCTTAGTTTT+GGG + chr5_3:49573681-49573700 Msa0815860:CDS 40.0%
!!! TACTGGGGATCTTAGTTTTG+GGG + chr5_3:49573682-49573701 Msa0815860:CDS 40.0%
GATTGTGTTGTAGAAGCGAT+CGG + chr5_3:49573713-49573732 Msa0815860:CDS 40.0%
GATTGTGGTACTGCAGATTA+TGG + chr5_3:49573749-49573768 Msa0815860:CDS 40.0%
TATGCAAGATATTCTACCGG+TGG + chr5_3:49573794-49573813 Msa0815860:CDS 40.0%
ATGCAAGATATTCTACCGGT+GGG + chr5_3:49573795-49573814 Msa0815860:CDS 40.0%
CATGAGAAAGAACCCAAGAT+GGG - chr5_3:49573852-49573871 None:intergenic 40.0%
ACATGAGAAAGAACCCAAGA+TGG - chr5_3:49573853-49573872 None:intergenic 40.0%
!!! ACAGCGTTTGTCGTTTTTTC+AGG + chr5_3:49574085-49574104 Msa0815860:intron 40.0%
GCCATCCAACAAAATAAGTC+AGG - chr5_3:49574580-49574599 None:intergenic 40.0%
!! TATTTTGTTGGATGGCTTGC+AGG + chr5_3:49574584-49574603 Msa0815860:intron 40.0%
GCAGGAAAATTGGGTATAGT+AGG + chr5_3:49574602-49574621 Msa0815860:intron 40.0%
AGCAAGATTTGTAGGAGACA+AGG + chr5_3:49574698-49574717 Msa0815860:CDS 40.0%
!!! CTTGTATCTTTTTTCCGTGC+AGG + chr5_3:49574856-49574875 Msa0815860:intron 40.0%
ATTAAGTTTGTGACGCTGAG+TGG + chr5_3:49574891-49574910 Msa0815860:three_prime_UTR 40.0%
TACGGTGAGATTTGATCAGT+GGG - chr5_3:49574921-49574940 None:intergenic 40.0%
ATACGGTGAGATTTGATCAG+TGG - chr5_3:49574922-49574941 None:intergenic 40.0%
ACTGATCAAATCTCACCGTA+TGG + chr5_3:49574921-49574940 Msa0815860:three_prime_UTR 40.0%
ACTCATAGAGGAAGTCCATA+CGG - chr5_3:49574939-49574958 None:intergenic 40.0%
ACCGTATAGGTAGAGGTTTG+TGG - chr5_3:49573201-49573220 None:intergenic 45.0%
ACAAACCTCTACCTATACGG+TGG + chr5_3:49573200-49573219 Msa0815860:CDS 45.0%
! TTTGACTCGTAGGGTGAGTT+TGG - chr5_3:49573248-49573267 None:intergenic 45.0%
! TGTTGCTGAGTTGACTAGTG+AGG - chr5_3:49573288-49573307 None:intergenic 45.0%
TAGGACGGTGAAGTTGTTGT+AGG - chr5_3:49573318-49573337 None:intergenic 45.0%
TACAACAACTTCACCGTCCT+AGG + chr5_3:49573317-49573336 Msa0815860:CDS 45.0%
ACAACAACTTCACCGTCCTA+GGG + chr5_3:49573318-49573337 Msa0815860:CDS 45.0%
TATGGCCTATATCAATGCCG+TGG + chr5_3:49573362-49573381 Msa0815860:CDS 45.0%
!!! TGCTACTTTTCTAGGAGTGG+AGG + chr5_3:49573508-49573527 Msa0815860:CDS 45.0%
GGCTATAATCCAGAAGCCAT+GGG + chr5_3:49573569-49573588 Msa0815860:CDS 45.0%
ACTAAGATCCCCAGTACACT+GGG - chr5_3:49573678-49573697 None:intergenic 45.0%
AACTAAGATCCCCAGTACAC+TGG - chr5_3:49573679-49573698 None:intergenic 45.0%
GGACGGTTGAAAAGTGATTG+TGG + chr5_3:49573734-49573753 Msa0815860:CDS 45.0%
TGCAAGATATTCTACCGGTG+GGG + chr5_3:49573796-49573815 Msa0815860:CDS 45.0%
ATGGGCCTTAGACGTATCAT+GGG - chr5_3:49573822-49573841 None:intergenic 45.0%
! GAAGAGTAATGGAGATTGGG+TGG + chr5_3:49573918-49573937 Msa0815860:intron 45.0%
! TGGATGGCTTGCAGGAAAAT+TGG + chr5_3:49574592-49574611 Msa0815860:intron 45.0%
! GGATGGCTTGCAGGAAAATT+GGG + chr5_3:49574593-49574612 Msa0815860:intron 45.0%
GGCACAAAAGCAACTCATAG+AGG - chr5_3:49574951-49574970 None:intergenic 45.0%
GAGGACTTTGAACCTTGAAG+AGG + chr5_3:49575042-49575061 Msa0815860:three_prime_UTR 45.0%
GGAAAGCAGCTAGAATCTCT+TGG - chr5_3:49575140-49575159 None:intergenic 45.0%
ACCGTATAGGTAGAGGTTTG+TGG - chr5_3:49573201-49573220 None:intergenic 45.0%
ACAAACCTCTACCTATACGG+TGG + chr5_3:49573200-49573219 Msa0815860:CDS 45.0%
! TTTGACTCGTAGGGTGAGTT+TGG - chr5_3:49573248-49573267 None:intergenic 45.0%
! TGTTGCTGAGTTGACTAGTG+AGG - chr5_3:49573288-49573307 None:intergenic 45.0%
TAGGACGGTGAAGTTGTTGT+AGG - chr5_3:49573318-49573337 None:intergenic 45.0%
TACAACAACTTCACCGTCCT+AGG + chr5_3:49573317-49573336 Msa0815860:CDS 45.0%
ACAACAACTTCACCGTCCTA+GGG + chr5_3:49573318-49573337 Msa0815860:CDS 45.0%
TATGGCCTATATCAATGCCG+TGG + chr5_3:49573362-49573381 Msa0815860:CDS 45.0%
!!! TGCTACTTTTCTAGGAGTGG+AGG + chr5_3:49573508-49573527 Msa0815860:CDS 45.0%
GGCTATAATCCAGAAGCCAT+GGG + chr5_3:49573569-49573588 Msa0815860:CDS 45.0%
ACTAAGATCCCCAGTACACT+GGG - chr5_3:49573678-49573697 None:intergenic 45.0%
AACTAAGATCCCCAGTACAC+TGG - chr5_3:49573679-49573698 None:intergenic 45.0%
GGACGGTTGAAAAGTGATTG+TGG + chr5_3:49573734-49573753 Msa0815860:CDS 45.0%
TGCAAGATATTCTACCGGTG+GGG + chr5_3:49573796-49573815 Msa0815860:CDS 45.0%
ATGGGCCTTAGACGTATCAT+GGG - chr5_3:49573822-49573841 None:intergenic 45.0%
! GAAGAGTAATGGAGATTGGG+TGG + chr5_3:49573918-49573937 Msa0815860:intron 45.0%
! TGGATGGCTTGCAGGAAAAT+TGG + chr5_3:49574592-49574611 Msa0815860:intron 45.0%
! GGATGGCTTGCAGGAAAATT+GGG + chr5_3:49574593-49574612 Msa0815860:intron 45.0%
GGCACAAAAGCAACTCATAG+AGG - chr5_3:49574951-49574970 None:intergenic 45.0%
GAGGACTTTGAACCTTGAAG+AGG + chr5_3:49575042-49575061 Msa0815860:three_prime_UTR 45.0%
GGAAAGCAGCTAGAATCTCT+TGG - chr5_3:49575140-49575159 None:intergenic 45.0%
TGCAACCACCGTATAGGTAG+AGG - chr5_3:49573208-49573227 None:intergenic 50.0%
GTTGTGTGCAACCACCGTAT+AGG - chr5_3:49573214-49573233 None:intergenic 50.0%
GTGAGGTGAGGAGTGAATTG+AGG - chr5_3:49573271-49573290 None:intergenic 50.0%
! CTGAGTTGACTAGTGAGGTG+AGG - chr5_3:49573283-49573302 None:intergenic 50.0%
! AAAAAGTGTGGGCCTTCCGT+GGG + chr5_3:49573548-49573567 Msa0815860:CDS 50.0%
TCTGGATTATAGCCCACGGA+AGG - chr5_3:49573563-49573582 None:intergenic 50.0%
GGCTTCTGGATTATAGCCCA+CGG - chr5_3:49573567-49573586 None:intergenic 50.0%
GGGCTATAATCCAGAAGCCA+TGG + chr5_3:49573568-49573587 Msa0815860:CDS 50.0%
TCAAGAGATGCTGTGCTTGG+TGG + chr5_3:49573593-49573612 Msa0815860:CDS 50.0%
CAAGAGATGCTGTGCTTGGT+GGG + chr5_3:49573594-49573613 Msa0815860:CDS 50.0%
!!! TTAGGTGGGCCTTTTAGGGT+TGG + chr5_3:49573626-49573645 Msa0815860:CDS 50.0%
!!! GCCTTTTAGGGTTGGTGGTT+CGG + chr5_3:49573634-49573653 Msa0815860:CDS 50.0%
!!! CCTTTTAGGGTTGGTGGTTC+GGG + chr5_3:49573635-49573654 Msa0815860:CDS 50.0%
GTGTTGTAGAAGCGATCGGA+CGG + chr5_3:49573717-49573736 Msa0815860:CDS 50.0%
CATGGGCCTTAGACGTATCA+TGG - chr5_3:49573823-49573842 None:intergenic 50.0%
! CATGATACGTCTAAGGCCCA+TGG + chr5_3:49573821-49573840 Msa0815860:CDS 50.0%
! CCCAAGATGGGCTTTACCAT+GGG - chr5_3:49573840-49573859 None:intergenic 50.0%
CCCATGGTAAAGCCCATCTT+GGG + chr5_3:49573837-49573856 Msa0815860:intron 50.0%
! ACCCAAGATGGGCTTTACCA+TGG - chr5_3:49573841-49573860 None:intergenic 50.0%
! GAGTAATGGAGATTGGGTGG+TGG + chr5_3:49573921-49573940 Msa0815860:intron 50.0%
TGCAACCACCGTATAGGTAG+AGG - chr5_3:49573208-49573227 None:intergenic 50.0%
GTTGTGTGCAACCACCGTAT+AGG - chr5_3:49573214-49573233 None:intergenic 50.0%
GTGAGGTGAGGAGTGAATTG+AGG - chr5_3:49573271-49573290 None:intergenic 50.0%
! CTGAGTTGACTAGTGAGGTG+AGG - chr5_3:49573283-49573302 None:intergenic 50.0%
! AAAAAGTGTGGGCCTTCCGT+GGG + chr5_3:49573548-49573567 Msa0815860:CDS 50.0%
TCTGGATTATAGCCCACGGA+AGG - chr5_3:49573563-49573582 None:intergenic 50.0%
GGCTTCTGGATTATAGCCCA+CGG - chr5_3:49573567-49573586 None:intergenic 50.0%
GGGCTATAATCCAGAAGCCA+TGG + chr5_3:49573568-49573587 Msa0815860:CDS 50.0%
TCAAGAGATGCTGTGCTTGG+TGG + chr5_3:49573593-49573612 Msa0815860:CDS 50.0%
CAAGAGATGCTGTGCTTGGT+GGG + chr5_3:49573594-49573613 Msa0815860:CDS 50.0%
!!! TTAGGTGGGCCTTTTAGGGT+TGG + chr5_3:49573626-49573645 Msa0815860:CDS 50.0%
!!! GCCTTTTAGGGTTGGTGGTT+CGG + chr5_3:49573634-49573653 Msa0815860:CDS 50.0%
!!! CCTTTTAGGGTTGGTGGTTC+GGG + chr5_3:49573635-49573654 Msa0815860:CDS 50.0%
GTGTTGTAGAAGCGATCGGA+CGG + chr5_3:49573717-49573736 Msa0815860:CDS 50.0%
CATGGGCCTTAGACGTATCA+TGG - chr5_3:49573823-49573842 None:intergenic 50.0%
! CATGATACGTCTAAGGCCCA+TGG + chr5_3:49573821-49573840 Msa0815860:CDS 50.0%
! CCCAAGATGGGCTTTACCAT+GGG - chr5_3:49573840-49573859 None:intergenic 50.0%
CCCATGGTAAAGCCCATCTT+GGG + chr5_3:49573837-49573856 Msa0815860:intron 50.0%
! ACCCAAGATGGGCTTTACCA+TGG - chr5_3:49573841-49573860 None:intergenic 50.0%
! GAGTAATGGAGATTGGGTGG+TGG + chr5_3:49573921-49573940 Msa0815860:intron 50.0%
TTGTTGGGTGGACCCTAGGA+CGG - chr5_3:49573333-49573352 None:intergenic 55.0%
! TGTCTTGTTGGGTGGACCCT+AGG - chr5_3:49573337-49573356 None:intergenic 55.0%
!! GGTCGCCACGGCATTGATAT+AGG - chr5_3:49573370-49573389 None:intergenic 55.0%
TCACCAAACAACCGTCGAGC+TGG - chr5_3:49573478-49573497 None:intergenic 55.0%
! GAAAAAGTGTGGGCCTTCCG+TGG + chr5_3:49573547-49573566 Msa0815860:CDS 55.0%
TCTCTTGAGCCCATGGCTTC+TGG - chr5_3:49573581-49573600 None:intergenic 55.0%
CACAGCATCTCTTGAGCCCA+TGG - chr5_3:49573588-49573607 None:intergenic 55.0%
GGCTCAAGAGATGCTGTGCT+TGG + chr5_3:49573590-49573609 Msa0815860:CDS 55.0%
! TGGGCTTAGGTGGGCCTTTT+AGG + chr5_3:49573621-49573640 Msa0815860:CDS 55.0%
! GGGCTTAGGTGGGCCTTTTA+GGG + chr5_3:49573622-49573641 Msa0815860:CDS 55.0%
CCCGAACCACCAACCCTAAA+AGG - chr5_3:49573638-49573657 None:intergenic 55.0%
!! TAGGGTTGGTGGTTCGGGTA+TGG + chr5_3:49573640-49573659 Msa0815860:CDS 55.0%
!! GTGGTGTTGCCCAGTGTACT+GGG + chr5_3:49573666-49573685 Msa0815860:CDS 55.0%
!! TGGTGTTGCCCAGTGTACTG+GGG + chr5_3:49573667-49573686 Msa0815860:CDS 55.0%
TGGGGCCCATGATACGTCTA+AGG + chr5_3:49573814-49573833 Msa0815860:CDS 55.0%
GCCCATGGTAAAGCCCATCT+TGG + chr5_3:49573836-49573855 Msa0815860:intron 55.0%
TTGTTGGGTGGACCCTAGGA+CGG - chr5_3:49573333-49573352 None:intergenic 55.0%
! TGTCTTGTTGGGTGGACCCT+AGG - chr5_3:49573337-49573356 None:intergenic 55.0%
!! GGTCGCCACGGCATTGATAT+AGG - chr5_3:49573370-49573389 None:intergenic 55.0%
TCACCAAACAACCGTCGAGC+TGG - chr5_3:49573478-49573497 None:intergenic 55.0%
! GAAAAAGTGTGGGCCTTCCG+TGG + chr5_3:49573547-49573566 Msa0815860:CDS 55.0%
TCTCTTGAGCCCATGGCTTC+TGG - chr5_3:49573581-49573600 None:intergenic 55.0%
CACAGCATCTCTTGAGCCCA+TGG - chr5_3:49573588-49573607 None:intergenic 55.0%
GGCTCAAGAGATGCTGTGCT+TGG + chr5_3:49573590-49573609 Msa0815860:CDS 55.0%
! TGGGCTTAGGTGGGCCTTTT+AGG + chr5_3:49573621-49573640 Msa0815860:CDS 55.0%
! GGGCTTAGGTGGGCCTTTTA+GGG + chr5_3:49573622-49573641 Msa0815860:CDS 55.0%
CCCGAACCACCAACCCTAAA+AGG - chr5_3:49573638-49573657 None:intergenic 55.0%
!! TAGGGTTGGTGGTTCGGGTA+TGG + chr5_3:49573640-49573659 Msa0815860:CDS 55.0%
!! GTGGTGTTGCCCAGTGTACT+GGG + chr5_3:49573666-49573685 Msa0815860:CDS 55.0%
!! TGGTGTTGCCCAGTGTACTG+GGG + chr5_3:49573667-49573686 Msa0815860:CDS 55.0%
TGGGGCCCATGATACGTCTA+AGG + chr5_3:49573814-49573833 Msa0815860:CDS 55.0%
GCCCATGGTAAAGCCCATCT+TGG + chr5_3:49573836-49573855 Msa0815860:intron 55.0%
GACATGTGTCGCGACTCGTG+CGG + chr5_3:49573443-49573462 Msa0815860:CDS 60.0%
GGTCCAGCTCGACGGTTGTT+TGG + chr5_3:49573472-49573491 Msa0815860:CDS 60.0%
!! TGCTGTGCTTGGTGGGCTTG+TGG + chr5_3:49573601-49573620 Msa0815860:CDS 60.0%
!! GCTGTGCTTGGTGGGCTTGT+GGG + chr5_3:49573602-49573621 Msa0815860:CDS 60.0%
!! CTTGGTGGGCTTGTGGGCTT+AGG + chr5_3:49573608-49573627 Msa0815860:CDS 60.0%
GTGGGCTTGTGGGCTTAGGT+GGG + chr5_3:49573612-49573631 Msa0815860:CDS 60.0%
!!! GGTGGGCCTTTTAGGGTTGG+TGG + chr5_3:49573629-49573648 Msa0815860:CDS 60.0%
! GGTGGTTCGGGTATGGTACG+TGG + chr5_3:49573647-49573666 Msa0815860:CDS 60.0%
!! CGTGGTGTTGCCCAGTGTAC+TGG + chr5_3:49573665-49573684 Msa0815860:CDS 60.0%
AGACGTATCATGGGCCCCAC+CGG - chr5_3:49573813-49573832 None:intergenic 60.0%
GACATGTGTCGCGACTCGTG+CGG + chr5_3:49573443-49573462 Msa0815860:CDS 60.0%
GGTCCAGCTCGACGGTTGTT+TGG + chr5_3:49573472-49573491 Msa0815860:CDS 60.0%
!! TGCTGTGCTTGGTGGGCTTG+TGG + chr5_3:49573601-49573620 Msa0815860:CDS 60.0%
!! GCTGTGCTTGGTGGGCTTGT+GGG + chr5_3:49573602-49573621 Msa0815860:CDS 60.0%
!! CTTGGTGGGCTTGTGGGCTT+AGG + chr5_3:49573608-49573627 Msa0815860:CDS 60.0%
GTGGGCTTGTGGGCTTAGGT+GGG + chr5_3:49573612-49573631 Msa0815860:CDS 60.0%
!!! GGTGGGCCTTTTAGGGTTGG+TGG + chr5_3:49573629-49573648 Msa0815860:CDS 60.0%
! GGTGGTTCGGGTATGGTACG+TGG + chr5_3:49573647-49573666 Msa0815860:CDS 60.0%
!! CGTGGTGTTGCCCAGTGTAC+TGG + chr5_3:49573665-49573684 Msa0815860:CDS 60.0%
AGACGTATCATGGGCCCCAC+CGG - chr5_3:49573813-49573832 None:intergenic 60.0%
AGGCACAGTCCGGCATAGCG+AGG - chr5_3:49573391-49573410 None:intergenic 65.0%
! GCGACACAGGAGGCACAGTC+CGG - chr5_3:49573401-49573420 None:intergenic 65.0%
TGTGACAGCGCGTGCGACAC+AGG - chr5_3:49573414-49573433 None:intergenic 65.0%
CACGCGCTGTCACACGTGCT+GGG + chr5_3:49573420-49573439 Msa0815860:CDS 65.0%
ACGCGCTGTCACACGTGCTG+GGG + chr5_3:49573421-49573440 Msa0815860:CDS 65.0%
ATGTGTCGCGACTCGTGCGG+AGG + chr5_3:49573446-49573465 Msa0815860:CDS 65.0%
! GGTGGGCTTGTGGGCTTAGG+TGG + chr5_3:49573611-49573630 Msa0815860:CDS 65.0%
AGGCACAGTCCGGCATAGCG+AGG - chr5_3:49573391-49573410 None:intergenic 65.0%
! GCGACACAGGAGGCACAGTC+CGG - chr5_3:49573401-49573420 None:intergenic 65.0%
TGTGACAGCGCGTGCGACAC+AGG - chr5_3:49573414-49573433 None:intergenic 65.0%
CACGCGCTGTCACACGTGCT+GGG + chr5_3:49573420-49573439 Msa0815860:CDS 65.0%
ACGCGCTGTCACACGTGCTG+GGG + chr5_3:49573421-49573440 Msa0815860:CDS 65.0%
ATGTGTCGCGACTCGTGCGG+AGG + chr5_3:49573446-49573465 Msa0815860:CDS 65.0%
! GGTGGGCTTGTGGGCTTAGG+TGG + chr5_3:49573611-49573630 Msa0815860:CDS 65.0%
CCGGCATAGCGAGGTCGCCA+CGG - chr5_3:49573382-49573401 None:intergenic 70.0%
CCGTGGCGACCTCGCTATGC+CGG + chr5_3:49573379-49573398 Msa0815860:CDS 70.0%
GACAGCGCGTGCGACACAGG+AGG - chr5_3:49573411-49573430 None:intergenic 70.0%
GCACGCGCTGTCACACGTGC+TGG + chr5_3:49573419-49573438 Msa0815860:CDS 70.0%
TCGCGACTCGTGCGGAGGCA+CGG + chr5_3:49573451-49573470 Msa0815860:CDS 70.0%
! GGAGGCACGGTCCAGCTCGA+CGG + chr5_3:49573464-49573483 Msa0815860:CDS 70.0%
CCGGCATAGCGAGGTCGCCA+CGG - chr5_3:49573382-49573401 None:intergenic 70.0%
CCGTGGCGACCTCGCTATGC+CGG + chr5_3:49573379-49573398 Msa0815860:CDS 70.0%
GACAGCGCGTGCGACACAGG+AGG - chr5_3:49573411-49573430 None:intergenic 70.0%
GCACGCGCTGTCACACGTGC+TGG + chr5_3:49573419-49573438 Msa0815860:CDS 70.0%
TCGCGACTCGTGCGGAGGCA+CGG + chr5_3:49573451-49573470 Msa0815860:CDS 70.0%
! GGAGGCACGGTCCAGCTCGA+CGG + chr5_3:49573464-49573483 Msa0815860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 49572935 49575269 49572935 ID=Msa0815860;Name=Msa0815860
chr5_3 mRNA 49572935 49575269 49572935 ID=Msa0815860-mRNA-1;Parent=Msa0815860;Name=Msa0815860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=193|1|1|1|1|1|3|384|278
chr5_3 exon 49572935 49573842 49572935 ID=Msa0815860-mRNA-1:exon:14899;Parent=Msa0815860-mRNA-1
chr5_3 exon 49574606 49574719 49574606 ID=Msa0815860-mRNA-1:exon:14900;Parent=Msa0815860-mRNA-1
chr5_3 exon 49574878 49575269 49574878 ID=Msa0815860-mRNA-1:exon:14901;Parent=Msa0815860-mRNA-1
chr5_3 five_prime_UTR 49572935 49573127 49572935 ID=Msa0815860-mRNA-1:five_prime_utr;Parent=Msa0815860-mRNA-1
chr5_3 CDS 49573128 49573842 49573128 ID=Msa0815860-mRNA-1:cds;Parent=Msa0815860-mRNA-1
chr5_3 CDS 49574606 49574719 49574606 ID=Msa0815860-mRNA-1:cds;Parent=Msa0815860-mRNA-1
chr5_3 CDS 49574878 49574885 49574878 ID=Msa0815860-mRNA-1:cds;Parent=Msa0815860-mRNA-1
chr5_3 three_prime_UTR 49574886 49575269 49574886 ID=Msa0815860-mRNA-1:three_prime_utr;Parent=Msa0815860-mRNA-1
Gene Sequence

>Msa0815860

ATGGTGAGATTCTTCAAAATTATCTTTCTTTTTTCTACCACCCTTTTTCTTTCCTTATCAGAATCATCAACCACAAACCTCTACCTATACGGTGGTTGCACACAACAAATGTACACACCAAACTCACCCTACGAGTCAAACCTCAATTCACTCCTCACCTCACTAGTCAACTCAGCAACATACTCATCCTACAACAACTTCACCGTCCTAGGGTCCACCCAACAAGACATAATCTATGGCCTATATCAATGCCGTGGCGACCTCGCTATGCCGGACTGTGCCTCCTGTGTCGCACGCGCTGTCACACGTGCTGGGGACATGTGTCGCGACTCGTGCGGAGGCACGGTCCAGCTCGACGGTTGTTTGGTGAAGTATGACAATGCTACTTTTCTAGGAGTGGAGGATAAGAATGTTTTGTTGAAAAAGTGTGGGCCTTCCGTGGGCTATAATCCAGAAGCCATGGGCTCAAGAGATGCTGTGCTTGGTGGGCTTGTGGGCTTAGGTGGGCCTTTTAGGGTTGGTGGTTCGGGTATGGTACGTGGTGTTGCCCAGTGTACTGGGGATCTTAGTTTTGGGGAGTGTCAAGATTGTGTTGTAGAAGCGATCGGACGGTTGAAAAGTGATTGTGGTACTGCAGATTATGGAGATTTGTTCTTGGGTAAATGTTATGCAAGATATTCTACCGGTGGGGCCCATGATACGTCTAAGGCCCATGGAAAATTGGGTATAGTAGGTGAAAAGAGATTTGCATTAATCATTGGTTTATTAGCAGGAGCAGCCATACTTGTTATTCTCATTGCTTTCTTGAGCAAGATTTGTAGGAGACAAGGTAAATAA
Protein sequence

>Msa0815860

MVRFFKIIFLFSTTLFLSLSESSTTNLYLYGGCTQQMYTPNSPYESNLNSLLTSLVNSATYSSYNNFTVLGSTQQDIIYGLYQCRGDLAMPDCASCVARAVTRAGDMCRDSCGGTVQLDGCLVKYDNATFLGVEDKNVLLKKCGPSVGYNPEAMGSRDAVLGGLVGLGGPFRVGGSGMVRGVAQCTGDLSFGECQDCVVEAIGRLKSDCGTADYGDLFLGKCYARYSTGGAHDTSKAHGKLGIVGEKRFALIIGLLAGAAILVILIAFLSKICRRQGK*