AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685610 MtrunA17_Chr4g0033961 96.270 429 13 1 1 426 1 429 0.0 850
Msa0685610 MtrunA17_Chr1g0162441 61.785 437 149 7 2 426 3 433 0.0 546
Msa0685610 MtrunA17_Chr1g0162411 42.494 393 180 10 4 356 5 391 3.29e-91 283
Msa0685610 MtrunA17_Chr7g0233571 40.909 110 63 1 1 110 5 112 5.26e-23 96.7
Msa0685610 MtrunA17_Chr3g0103151 37.778 135 74 2 6 140 12 136 8.02e-23 94.4
Msa0685610 MtrunA17_Chr8g0390841 40.741 108 64 0 6 113 39 146 5.38e-22 98.2
Msa0685610 MtrunA17_Chr8g0390841 38.843 121 66 5 280 399 228 341 1.05e-17 85.1
Msa0685610 MtrunA17_Chr7g0233561 41.414 99 58 0 6 104 18 116 1.25e-21 95.1
Msa0685610 MtrunA17_Chr7g0233561 34.848 132 78 2 270 393 186 317 6.32e-15 75.5
Msa0685610 MtrunA17_Chr1g0162421 58.621 58 24 0 20 77 7 64 2.09e-21 87.4
Msa0685610 MtrunA17_Chr3g0103181 35.606 132 75 2 6 137 12 133 7.52e-21 92.0
Msa0685610 MtrunA17_Chr1g0162431 67.925 53 17 0 341 393 5 57 1.08e-20 85.5
Msa0685610 MtrunA17_Chr3g0131891 38.393 112 67 1 6 117 19 128 1.64e-20 92.0
Msa0685610 MtrunA17_Chr3g0131891 36.585 123 72 2 277 393 186 308 7.01e-18 84.3
Msa0685610 MtrunA17_Chr3g0103191 34.848 132 76 2 6 137 12 133 3.45e-20 89.4
Msa0685610 MtrunA17_Chr1g0154211 28.000 400 223 16 11 392 27 379 5.83e-20 91.3
Msa0685610 MtrunA17_Chr7g0233541 41.667 96 54 1 22 115 2 97 8.46e-20 89.4
Msa0685610 MtrunA17_Chr5g0419201 34.483 145 94 1 3 146 13 157 1.41e-19 86.3
Msa0685610 MtrunA17_Chr1g0163071 37.500 120 68 2 22 141 2 114 1.50e-19 89.0
Msa0685610 MtrunA17_Chr1g0163071 37.288 118 67 3 283 400 187 297 6.99e-19 87.0
Msa0685610 MtrunA17_Chr3g0103171 36.752 117 66 1 21 137 5 113 1.79e-19 87.8
Msa0685610 MtrunA17_Chr3g0077411 36.364 110 70 0 3 112 22 131 3.79e-19 89.7
Msa0685610 MtrunA17_Chr3g0077411 36.893 103 64 1 3 104 259 361 3.34e-17 83.6
Msa0685610 MtrunA17_Chr1g0154041 25.000 396 234 13 4 392 14 353 3.97e-19 89.7
Msa0685610 MtrunA17_Chr3g0077461 38.235 102 63 0 3 104 234 335 3.98e-19 89.4
Msa0685610 MtrunA17_Chr3g0077461 36.957 92 58 0 21 112 22 113 4.99e-16 79.7
Msa0685610 MtrunA17_Chr1g0154111 25.135 370 223 7 18 384 38 356 6.46e-19 89.0
Msa0685610 MtrunA17_Chr4g0009491 39.216 102 62 0 3 104 222 323 1.17e-18 87.8
Msa0685610 MtrunA17_Chr4g0009491 35.294 85 55 0 20 104 11 95 9.59e-12 66.6
Msa0685610 MtrunA17_Chr3g0077451 39.785 93 56 0 20 112 10 102 2.03e-18 84.3
Msa0685610 MtrunA17_Chr3g0077451 35.821 134 70 5 267 391 111 237 2.06e-13 69.7
Msa0685610 MtrunA17_Chr7g0233521 42.697 89 49 1 22 110 2 88 3.30e-18 84.3
Msa0685610 MtrunA17_Chr7g0233521 30.303 132 85 3 268 393 138 268 1.38e-11 64.7
Msa0685610 MtrunA17_Chr1g0208771 37.405 131 74 4 270 399 178 301 3.57e-18 86.3
Msa0685610 MtrunA17_Chr1g0208771 33.058 121 66 1 21 141 12 117 1.35e-16 81.6
Msa0685610 MtrunA17_Chr1g0154191 24.823 423 219 18 9 409 24 369 1.41e-17 84.0
Msa0685610 MtrunA17_Chr5g0429931 41.667 84 49 0 21 104 10 93 1.43e-17 82.0
Msa0685610 MtrunA17_Chr5g0429931 36.170 141 69 4 263 388 108 242 2.32e-14 72.8
Msa0685610 MtrunA17_Chr3g0077381 38.235 102 63 0 3 104 244 345 2.64e-17 83.6
Msa0685610 MtrunA17_Chr3g0077381 36.559 93 59 0 20 112 34 126 1.75e-14 75.1
Msa0685610 MtrunA17_Chr7g0233531 39.326 89 52 1 22 110 2 88 9.09e-17 80.1
Msa0685610 MtrunA17_Chr7g0233531 34.127 126 77 2 274 393 143 268 6.22e-14 72.0
Msa0685610 MtrunA17_Chr3g0077421 37.241 145 71 6 257 391 65 199 2.91e-16 77.0
Msa0685610 MtrunA17_Chr3g0077441 37.241 145 71 6 257 391 65 199 2.91e-16 77.0
Msa0685610 MtrunA17_Chr3g0077361 33.981 103 67 1 3 104 37 139 9.58e-16 79.3
Msa0685610 MtrunA17_Chr3g0077361 34.848 132 75 4 264 391 380 504 1.05e-14 75.9
Msa0685610 MtrunA17_Chr3g0077361 37.500 72 45 0 3 74 286 357 2.63e-12 68.6
Msa0685610 MtrunA17_Chr3g0077361 36.538 156 74 9 274 417 157 299 1.23e-11 66.2
Msa0685610 MtrunA17_Chr6g0467351 37.500 112 67 2 6 116 15 124 1.08e-14 73.2
Msa0685610 MtrunA17_Chr3g0077431 35.821 134 70 5 267 391 72 198 5.57e-14 70.5
Msa0685610 MtrunA17_Chr1g0163181 38.614 101 56 2 4 104 7 101 1.71e-13 72.0
Msa0685610 MtrunA17_Chr1g0163251 37.624 101 57 2 4 104 7 101 1.76e-13 71.6
Msa0685610 MtrunA17_Chr1g0163191 37.624 101 57 2 4 104 7 101 3.00e-13 67.4
Msa0685610 MtrunA17_Chr1g0154161 38.889 90 55 0 6 95 30 119 1.68e-12 68.2
Msa0685610 MtrunA17_Chr1g0154101 39.535 86 51 1 10 95 187 271 3.77e-12 68.6
Msa0685610 MtrunA17_Chr1g0154101 37.778 90 56 0 6 95 25 114 2.80e-11 65.9
Msa0685610 MtrunA17_Chr1g0154131 41.026 78 46 0 18 95 194 271 8.83e-12 66.6
Msa0685610 MtrunA17_Chr1g0154131 37.778 90 55 1 6 95 26 114 1.67e-11 65.9
Msa0685610 MtrunA17_Chr1g0163091 27.703 148 97 3 265 410 2 141 1.60e-11 62.4
Msa0685610 MtrunA17_Chr1g0171611 37.374 99 60 1 6 104 9 105 2.27e-11 64.3
Msa0685610 MtrunA17_Chr1g0154171 38.889 90 54 1 7 95 22 111 2.50e-11 64.7
Msa0685610 MtrunA17_Chr1g0154151 40.541 74 44 0 22 95 20 93 5.41e-11 63.5
Msa0685610 MtrunA17_Chr1g0163231 36.364 99 61 1 6 104 9 105 5.67e-11 63.2
Msa0685610 MtrunA17_Chr1g0154251 38.462 78 48 0 18 95 38 115 7.92e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685610 AT3G18990.1 50.382 393 139 7 1 391 1 339 6.14e-126 368
Msa0685610 AT3G18990.2 50.125 399 140 8 1 394 1 345 1.25e-124 366
Msa0685610 AT1G49480.3 63.483 178 57 3 216 391 53 224 2.29e-72 227
Msa0685610 AT1G49480.1 63.483 178 57 3 216 391 53 224 2.29e-72 227
Msa0685610 AT1G49480.2 63.483 178 57 3 216 391 53 224 2.29e-72 227
Msa0685610 AT4G01580.1 39.806 103 62 0 2 104 26 128 3.15e-21 91.3
Msa0685610 AT3G18960.2 37.864 103 64 0 2 104 26 128 2.09e-20 89.0
Msa0685610 AT3G18960.1 37.864 103 64 0 2 104 26 128 2.17e-20 89.4
Msa0685610 AT1G49475.1 33.803 142 87 3 2 137 27 167 5.43e-18 82.0
Msa0685610 AT3G18960.3 34.524 84 55 0 21 104 8 91 1.30e-13 69.3
Msa0685610 AT2G16210.2 34.314 102 62 4 5 102 18 118 8.21e-11 62.0

Find 127 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTCATCAAATGCTTTA+AGG 0.135808 4_4:-49802080 Msa0685610:five_prime_UTR
GTCTACCGAGTTGGCATTTC+TGG 0.137922 4_4:+49800270 None:intergenic
CAAAGCAACTTTCTCATTTC+CGG 0.157107 4_4:+49802340 None:intergenic
ATGCTTTAAGGCTTTGATTT+TGG 0.173014 4_4:-49802068 Msa0685610:five_prime_UTR
AAAAGGTAGACAACAAATTT+TGG 0.211575 4_4:-49800690 Msa0685610:CDS
AAGAACTTGAATGGCGTTTC+AGG 0.211639 4_4:-49799717 Msa0685610:CDS
GCACTGCAGAATCTGTTTAA+TGG 0.280689 4_4:-49800340 Msa0685610:CDS
ACGACCCTCCTATTTATATA+GGG 0.302805 4_4:-49799859 Msa0685610:CDS
CTAAACTTAATAGCATAAAC+TGG 0.308905 4_4:-49800315 Msa0685610:CDS
TTTCATCTAATTTCTTCAAA+TGG 0.330336 4_4:-49799319 Msa0685610:three_prime_UTR
TAAACTCAACTACATTAAAC+TGG 0.334276 4_4:+49800221 None:intergenic
AGTAATGAAGCGTCTCTCTT+TGG 0.337462 4_4:-49800517 Msa0685610:CDS
TTTCGCTGGAGAACAATTTA+GGG 0.350563 4_4:-49799599 Msa0685610:CDS
TTGCTTTGGAAAATCCAAAC+TGG 0.371344 4_4:-49802325 Msa0685610:five_prime_UTR
CATGTTCAGAAGGAGGTTCC+TGG 0.372328 4_4:+49800021 None:intergenic
ATTGAAAGATGAAAGCTTTG+AGG 0.379325 4_4:+49802109 None:intergenic
CGGAAATGAGAAAGTTGCTT+TGG 0.380233 4_4:-49802339 Msa0685610:five_prime_UTR
AGCTAATCACACACAAGAAA+AGG 0.380477 4_4:+49799343 None:intergenic
TTCATCTAATTTCTTCAAAT+GGG 0.391881 4_4:-49799318 Msa0685610:three_prime_UTR
TACGACCCTCCTATTTATAT+AGG 0.394690 4_4:-49799860 Msa0685610:CDS
CAACAAGTATCCAGTACTAA+TGG 0.397395 4_4:+49800630 None:intergenic
TAGCTCTACCACCTCTATAA+AGG 0.406566 4_4:+49799646 None:intergenic
TGAGTCACCAACTCGTTATT+AGG 0.410373 4_4:-49802271 Msa0685610:five_prime_UTR
GCAGAACCAACATGTGAAAC+TGG 0.412096 4_4:-49799466 Msa0685610:CDS
GACCTATATCTCTGGTCAAC+TGG 0.412834 4_4:+49800245 None:intergenic
CATTAGTACTGGATACTTGT+TGG 0.415047 4_4:-49800629 Msa0685610:CDS
GTTTCCGTTTGGAGTTTGTT+TGG 0.420376 4_4:+49802391 None:intergenic
TGGTTCTGCTGCAACGGCTG+TGG 0.421147 4_4:+49799480 None:intergenic
TTGCAAAACAAAGCAGTTAC+CGG 0.427667 4_4:-49800406 Msa0685610:CDS
TGAAGATTCTGTTGAAATCA+TGG 0.428155 4_4:-49800461 Msa0685610:CDS
ATGAGGTAGAAATGCGCAAT+AGG 0.433073 4_4:-49799995 Msa0685610:CDS
GAAACAACAAAAGTGTGGTT+TGG 0.438389 4_4:-49802373 Msa0685610:five_prime_UTR
ACACACAAGAAAAGGGATAC+TGG 0.440613 4_4:+49799351 None:intergenic
TATTTCCTCATAAAATCATC+TGG 0.445116 4_4:+49800781 None:intergenic
GCTGTAAAGAAGAGGAAATC+AGG 0.445746 4_4:-49800139 Msa0685610:intron
GGTTCTGCTGCAACGGCTGT+GGG 0.447673 4_4:+49799481 None:intergenic
AACCAGTTGACCAGAGATAT+AGG 0.450024 4_4:-49800247 Msa0685610:CDS
CACTCTTCAAGCTAAGCAAC+TGG 0.450976 4_4:-49801983 Msa0685610:intron
AACCATCTAATCCTTTCTGT+CGG 0.454042 4_4:-49799890 Msa0685610:CDS
GTGGCGTGTAGGAATGAAAA+AGG 0.456416 4_4:-49800707 Msa0685610:CDS
ACCATCTAATCCTTTCTGTC+GGG 0.457399 4_4:-49799889 Msa0685610:CDS
AGCTTTCATCTTTCAATCAA+AGG 0.458663 4_4:-49802103 Msa0685610:five_prime_UTR
ATCAAACTTCAAATCTCTGA+TGG 0.460034 4_4:-49799690 Msa0685610:CDS
ACCCGACAGAAAGGATTAGA+TGG 0.462119 4_4:+49799888 None:intergenic
GCTTTCATCTTTCAATCAAA+GGG 0.464016 4_4:-49802102 Msa0685610:five_prime_UTR
CCAGTTCGCTGCCTTTATAG+AGG 0.464193 4_4:-49799657 Msa0685610:CDS
CCTCTATAAAGGCAGCGAAC+TGG 0.468295 4_4:+49799657 None:intergenic
CAAATTCATTCCAGCCATCA+AGG 0.469351 4_4:+49800665 None:intergenic
TTAAACAGATTCTGCAGTGC+TGG 0.470577 4_4:+49800343 None:intergenic
GAGTTTGTTTGGAACATAGT+TGG 0.479789 4_4:+49802402 None:intergenic
TGGTAGAGCTAAGTTAAGCC+AGG 0.481112 4_4:-49799634 Msa0685610:CDS
TTGTTGGTATTCAAATATGA+AGG 0.488579 4_4:-49800613 Msa0685610:CDS
ACATGTTGGTTCTGCTGCAA+CGG 0.490310 4_4:+49799474 None:intergenic
ACACGCCACGCACTGCCATC+AGG 0.495919 4_4:+49800721 None:intergenic
TCTAGCTTATATCAGAAACT+TGG 0.498866 4_4:-49799189 Msa0685610:three_prime_UTR
TTTGCAATAGGCTAGGAGTA+AGG 0.503132 4_4:+49800422 None:intergenic
AGAACAAGCTTATGAAATGA+AGG 0.504843 4_4:+49802012 None:intergenic
CGTTTACCAGTTTCACATGT+TGG 0.506129 4_4:+49799460 None:intergenic
TTTGCAGAGAAGAACTTGAA+TGG 0.506953 4_4:-49799726 Msa0685610:CDS
AGCATAAACTGGGGTGAAGG+TGG 0.512276 4_4:-49800304 Msa0685610:CDS
AAGTCATCATCTTGAAATGT+TGG 0.517522 4_4:+49799275 None:intergenic
GCTAATCACACACAAGAAAA+GGG 0.517703 4_4:+49799344 None:intergenic
CGATGTGTGTGTGTTTGAGC+TGG 0.519261 4_4:-49799571 Msa0685610:CDS
GCGCGCGGCTACTGATGAAA+AGG 0.522792 4_4:-49800173 Msa0685610:CDS
GAAGCGAGGTGATGCTGAAA+CGG 0.522835 4_4:+49799435 None:intergenic
ACCTCATCTTCATGTTCAGA+AGG 0.527271 4_4:+49800011 None:intergenic
TGTTCCAAACAAACTCCAAA+CGG 0.528885 4_4:-49802395 Msa0685610:five_prime_UTR
AAACTGGAGACCTATATCTC+TGG 0.534467 4_4:+49800237 None:intergenic
TGGTGGTGATATTTCTCCAA+TGG 0.535973 4_4:-49800758 Msa0685610:CDS
TTTCGTATTACAGAGGATGA+AGG 0.541809 4_4:-49799513 Msa0685610:CDS
TGCTTAGCTTGAAGAGTGGA+GGG 0.543127 4_4:+49801988 None:intergenic
AAAGTTGAGCTACGACCTAT+CGG 0.547743 4_4:+49799382 None:intergenic
AACTCGTTATTAGGCCAAGT+TGG 0.549255 4_4:-49802262 Msa0685610:five_prime_UTR
AACGAAGGAAGTAGTGCTGC+AGG 0.550293 4_4:-49799544 Msa0685610:CDS
CTGGAGAACAATTTAGGGGA+AGG 0.550360 4_4:-49799594 Msa0685610:CDS
GATGGCAGTGCGTGGCGTGT+AGG 0.551984 4_4:-49800718 Msa0685610:CDS
AGTAAGTTTATCAGCTGAGC+CGG 0.556292 4_4:+49800387 None:intergenic
AGGCTAGGAGTAAGGTTCGT+AGG 0.558211 4_4:+49800430 None:intergenic
AATAGCATAAACTGGGGTGA+AGG 0.559689 4_4:-49800307 Msa0685610:CDS
GCGAAAACTCATACCACCCC+TGG 0.559736 4_4:+49799616 None:intergenic
TTCTTCTCTGCAAAGCAAGA+TGG 0.561035 4_4:+49799735 None:intergenic
CAACTGGTTGTCTACCGAGT+TGG 0.563166 4_4:+49800261 None:intergenic
TGCAACGGCTGTGGGCTCAA+CGG 0.564438 4_4:+49799489 None:intergenic
CGACCCTCCTATTTATATAG+GGG 0.565038 4_4:-49799858 Msa0685610:CDS
TGCTTTGGAAAATCCAAACT+GGG 0.565994 4_4:-49802324 Msa0685610:five_prime_UTR
GGTAGAGCTAAGTTAAGCCA+GGG 0.566840 4_4:-49799633 Msa0685610:CDS
CGTAGGACAACCCGACAGAA+AGG 0.567258 4_4:+49799879 None:intergenic
TGATAGTTAATCTCAGATGT+AGG 0.567814 4_4:+49800556 None:intergenic
TTGCTTAGCTTGAAGAGTGG+AGG 0.568784 4_4:+49801987 None:intergenic
AGAAAACTGCTGTAAAGAAG+AGG 0.569808 4_4:-49800147 Msa0685610:CDS
AGATTCTGCAGTGCTGGAGG+CGG 0.572818 4_4:+49800349 None:intergenic
AGCTTATGAAATGAAGGAGA+AGG 0.572983 4_4:+49802018 None:intergenic
TCCTTCCAGAAATGCCAACT+CGG 0.578453 4_4:-49800275 Msa0685610:CDS
ACCGAGTTGGCATTTCTGGA+AGG 0.582778 4_4:+49800274 None:intergenic
TAAACTTAATAGCATAAACT+GGG 0.585444 4_4:-49800314 Msa0685610:CDS
TATATAAATAGGAGGGTCGT+AGG 0.588497 4_4:+49799862 None:intergenic
TAACGAGTTGGTGACTCAGT+GGG 0.589671 4_4:+49802276 None:intergenic
GCTTCATTACTTCTTTGCGC+AGG 0.592136 4_4:+49800529 None:intergenic
GTTCGCTGCCTTTATAGAGG+TGG 0.593487 4_4:-49799654 Msa0685610:CDS
TCAAACTTCAAATCTCTGAT+GGG 0.594893 4_4:-49799689 Msa0685610:CDS
TCCTTCTGAACATGAAGATG+AGG 0.595862 4_4:-49800012 Msa0685610:CDS
GGAACTTTGAGAGTAACCAT+TGG 0.597271 4_4:+49800742 None:intergenic
AACAGCTGAAGAAAGAGAGA+AGG 0.598211 4_4:-49799937 Msa0685610:CDS
AACTTGGCCTAATAACGAGT+TGG 0.599053 4_4:+49802264 None:intergenic
CAGTTGCTTAGCTTGAAGAG+TGG 0.602007 4_4:+49801984 None:intergenic
TCATCTTCATGTTCAGAAGG+AGG 0.602398 4_4:+49800014 None:intergenic
AAATTAACTTTGTTTCCGAT+AGG 0.605865 4_4:-49799397 Msa0685610:exon
AACAGATTCTGCAGTGCTGG+AGG 0.607091 4_4:+49800346 None:intergenic
GCATAAACTGGGGTGAAGGT+GGG 0.609417 4_4:-49800303 Msa0685610:CDS
GTTTGAGCTGGTTGCAACGA+AGG 0.613778 4_4:-49799559 Msa0685610:CDS
TTCGCTGGAGAACAATTTAG+GGG 0.616292 4_4:-49799598 Msa0685610:CDS
GGAGGCGGACGAGACTTGCA+AGG 0.616432 4_4:+49800364 None:intergenic
TACTGTATTTCGTATTACAG+AGG 0.616530 4_4:-49799520 Msa0685610:CDS
TAATCAGTTTAGTTGAAGCG+AGG 0.620183 4_4:+49799421 None:intergenic
TTTATGAAAGTGCATCCGCA+AGG 0.624536 4_4:-49799971 Msa0685610:CDS
AAGTTCCTGATGGCAGTGCG+TGG 0.628489 4_4:-49800726 Msa0685610:CDS
GTTACTCTCAAAGTTCCTGA+TGG 0.635054 4_4:-49800736 Msa0685610:CDS
AAATCTCTGATGGGAGACAG+TGG 0.637373 4_4:-49799680 Msa0685610:CDS
ATAACGAGTTGGTGACTCAG+TGG 0.662512 4_4:+49802275 None:intergenic
TACAAACCAAGTTAAAACAG+CGG 0.671161 4_4:+49799226 None:intergenic
GAGCTAAGTTAAGCCAGGGG+TGG 0.681213 4_4:-49799629 Msa0685610:CDS
AAAGAATATTGAGAGAGTGA+TGG 0.682434 4_4:-49802163 Msa0685610:five_prime_UTR
GACCCTCCTATTTATATAGG+GGG 0.685460 4_4:-49799857 Msa0685610:CDS
AAACGGAAACAACAAAAGTG+TGG 0.691612 4_4:-49802378 Msa0685610:five_prime_UTR
TGAAGAGTTGAAGTTGCGCG+CGG 0.706550 4_4:-49800188 Msa0685610:CDS
GTAGAGCTAAGTTAAGCCAG+GGG 0.733227 4_4:-49799632 Msa0685610:CDS
AAACTTAATAGCATAAACTG+GGG 0.737966 4_4:-49800313 Msa0685610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTGTAG+TGG - chr4_4:49799703-49799722 Msa0685610:CDS 10.0%
!!! TATTTATTTATTTTTGTAGT+GGG - chr4_4:49799704-49799723 Msa0685610:CDS 10.0%
!!! TTTAAATTTTTAGATTAGAT+GGG - chr4_4:49799839-49799858 Msa0685610:intron 10.0%
!!! ATCTTTTGTGTATTATTTTT+TGG - chr4_4:49799633-49799652 Msa0685610:CDS 15.0%
!! AAAATTTAAACTTGATGAAA+GGG + chr4_4:49799829-49799848 None:intergenic 15.0%
!! AAAAATTTAAACTTGATGAA+AGG + chr4_4:49799830-49799849 None:intergenic 15.0%
!!! GTTTAAATTTTTAGATTAGA+TGG - chr4_4:49799838-49799857 Msa0685610:intron 15.0%
!!! AAAAGAGTCATAAATATTTT+TGG - chr4_4:49799871-49799890 Msa0685610:CDS 15.0%
!!! AAAGAGTCATAAATATTTTT+GGG - chr4_4:49799872-49799891 Msa0685610:CDS 15.0%
!! ATATAATTAATAGTGTACTT+TGG - chr4_4:49800132-49800151 Msa0685610:intron 15.0%
!! TTAAAAAAAAAAAAGGAACT+CGG + chr4_4:49800258-49800277 None:intergenic 15.0%
!!! GTTCCTTTTTTTTTTTTAAA+TGG - chr4_4:49800259-49800278 Msa0685610:CDS 15.0%
!! TAGCCATTTAAAAAAAAAAA+AGG + chr4_4:49800265-49800284 None:intergenic 15.0%
!!! ACACAAAAGATTGAATTTTT+AGG + chr4_4:49799624-49799643 None:intergenic 20.0%
!!! TTTAAAGTCAAATCATAAAG+TGG - chr4_4:49799922-49799941 Msa0685610:CDS 20.0%
!! TTAAAGTCAAATCATAAAGT+GGG - chr4_4:49799923-49799942 Msa0685610:CDS 20.0%
!!! AAATCCTTTTTTTTTTTGTG+TGG + chr4_4:49800029-49800048 None:intergenic 20.0%
!!! AACTTGAAATTAGAGTTTTT+TGG - chr4_4:49800054-49800073 Msa0685610:intron 20.0%
!! ACATTGAAATAGTTTAAATC+AGG - chr4_4:49800227-49800246 Msa0685610:CDS 20.0%
!! TAAAAAAAAAAAAGGAACTC+GGG + chr4_4:49800257-49800276 None:intergenic 20.0%
!! TAAACTTAATAGCATAAACT+GGG - chr4_4:49801263-49801282 Msa0685610:intron 20.0%
!! CTTAGTTATTGTTTATAACT+CGG - chr4_4:49801462-49801481 Msa0685610:intron 20.0%
!! TTTCATCTAATTTCTTCAAA+TGG - chr4_4:49802258-49802277 Msa0685610:five_prime_UTR 20.0%
!! TTCATCTAATTTCTTCAAAT+GGG - chr4_4:49802259-49802278 Msa0685610:five_prime_UTR 20.0%
! ATAAAAAAAAGACACCAACT+TGG + chr4_4:49799332-49799351 None:intergenic 25.0%
!!! CAATGGTTTTTACTTTTTGA+AGG + chr4_4:49799358-49799377 None:intergenic 25.0%
!!! GCTTTTTTGACAAAAAACAA+TGG + chr4_4:49799375-49799394 None:intergenic 25.0%
!! TTCTTAGATGAATTTTTGCA+TGG - chr4_4:49799671-49799690 Msa0685610:CDS 25.0%
!!! AATTTTGATAGAGTGAAGAA+AGG - chr4_4:49799735-49799754 Msa0685610:CDS 25.0%
!!! ATTTTGATAGAGTGAAGAAA+GGG - chr4_4:49799736-49799755 Msa0685610:CDS 25.0%
!!! AAAGGGTTTGATAATTTTTC+TGG - chr4_4:49799753-49799772 Msa0685610:intron 25.0%
!!! AAGGGTTTGATAATTTTTCT+GGG - chr4_4:49799754-49799773 Msa0685610:intron 25.0%
!!! TCATAAATATTTTTGGGTCA+AGG - chr4_4:49799878-49799897 Msa0685610:CDS 25.0%
! TAAAGTCAAATCATAAAGTG+GGG - chr4_4:49799924-49799943 Msa0685610:CDS 25.0%
! TTCTCCACACAAAAAAAAAA+AGG - chr4_4:49800022-49800041 Msa0685610:CDS 25.0%
! TTGAAATAGTTTAAATCAGG+AGG - chr4_4:49800230-49800249 Msa0685610:CDS 25.0%
!! AAAAGATATAGGTTTAGTTC+AGG + chr4_4:49800532-49800551 None:intergenic 25.0%
! GATAGATTCGAAAAAGATAT+AGG + chr4_4:49800543-49800562 None:intergenic 25.0%
!!! TTGCACTTTTTGAAATGAAA+TGG - chr4_4:49800703-49800722 Msa0685610:CDS 25.0%
!!! TGGTGTTTTTTATACTATCA+TGG - chr4_4:49800723-49800742 Msa0685610:CDS 25.0%
! CATGGCAATTTACAAATATT+TGG - chr4_4:49800741-49800760 Msa0685610:CDS 25.0%
! TGCAATTCACAAATCATATT+AGG + chr4_4:49800769-49800788 None:intergenic 25.0%
! TATTTCCTCATAAAATCATC+TGG + chr4_4:49800799-49800818 None:intergenic 25.0%
!! GATGATTTTATGAGGAAATA+TGG - chr4_4:49800799-49800818 Msa0685610:intron 25.0%
!! AAAAGGTAGACAACAAATTT+TGG - chr4_4:49800887-49800906 Msa0685610:intron 25.0%
! CAAAAATATTCCATTAGTAC+TGG - chr4_4:49800937-49800956 Msa0685610:intron 25.0%
! TTGTTGGTATTCAAATATGA+AGG - chr4_4:49800964-49800983 Msa0685610:intron 25.0%
!! TCTTACTATTTTCGAAGAAA+TGG - chr4_4:49801089-49801108 Msa0685610:intron 25.0%
! CTAAACTTAATAGCATAAAC+TGG - chr4_4:49801262-49801281 Msa0685610:intron 25.0%
! AAACTTAATAGCATAAACTG+GGG - chr4_4:49801264-49801283 Msa0685610:intron 25.0%
! TAAACTCAACTACATTAAAC+TGG + chr4_4:49801359-49801378 None:intergenic 25.0%
! GAATGAAAAAAAAGTTGTGT+TGG + chr4_4:49801769-49801788 None:intergenic 25.0%
!! AAATTAACTTTGTTTCCGAT+AGG - chr4_4:49802180-49802199 Msa0685610:five_prime_UTR 25.0%
!!! GTGGTTTGGTTTTTTAAAAC+CGG - chr4_4:49799218-49799237 Msa0685610:three_prime_UTR 30.0%
AAAGAATATTGAGAGAGTGA+TGG - chr4_4:49799414-49799433 Msa0685610:CDS 30.0%
ATTGAAAGATGAAAGCTTTG+AGG + chr4_4:49799471-49799490 None:intergenic 30.0%
AGCTTTCATCTTTCAATCAA+AGG - chr4_4:49799474-49799493 Msa0685610:CDS 30.0%
GCTTTCATCTTTCAATCAAA+GGG - chr4_4:49799475-49799494 Msa0685610:CDS 30.0%
GTCATTCATCAAATGCTTTA+AGG - chr4_4:49799497-49799516 Msa0685610:CDS 30.0%
!!! ATGCTTTAAGGCTTTGATTT+TGG - chr4_4:49799509-49799528 Msa0685610:CDS 30.0%
AGAACAAGCTTATGAAATGA+AGG + chr4_4:49799568-49799587 None:intergenic 30.0%
AATATATGTGTGTTGCATGT+TGG + chr4_4:49799973-49799992 None:intergenic 30.0%
! TTTTACTGGTGGAATTTTTG+AGG - chr4_4:49800092-49800111 Msa0685610:intron 30.0%
!!! TTTCGTGGGTTTGTTTTTAT+CGG + chr4_4:49800388-49800407 None:intergenic 30.0%
AGCATATGTTAGTAAATTGC+TGG + chr4_4:49800447-49800466 None:intergenic 30.0%
! AATTGTTTCTCACTGTAACT+CGG + chr4_4:49800489-49800508 None:intergenic 30.0%
! ATATGATTTGTGAATTGCAG+AGG - chr4_4:49800770-49800789 Msa0685610:CDS 30.0%
! GATTTTATGAGGAAATATGG+TGG - chr4_4:49800802-49800821 Msa0685610:intron 30.0%
!!! AACAAATTTTGGTTCCTTGA+TGG - chr4_4:49800898-49800917 Msa0685610:intron 30.0%
TGATAGTTAATCTCAGATGT+AGG + chr4_4:49801024-49801043 None:intergenic 30.0%
TGAAGATTCTGTTGAAATCA+TGG - chr4_4:49801116-49801135 Msa0685610:intron 30.0%
!!! TAACTGCTTTGTTTTGCAAT+AGG + chr4_4:49801170-49801189 None:intergenic 30.0%
! AAATGATTTTGCTGCATTGA+TGG + chr4_4:49801666-49801685 None:intergenic 30.0%
ATCAAACTTCAAATCTCTGA+TGG - chr4_4:49801887-49801906 Msa0685610:intron 30.0%
TCAAACTTCAAATCTCTGAT+GGG - chr4_4:49801888-49801907 Msa0685610:intron 30.0%
TACTGTATTTCGTATTACAG+AGG - chr4_4:49802057-49802076 Msa0685610:five_prime_UTR 30.0%
AAGTCATCATCTTGAAATGT+TGG + chr4_4:49802305-49802324 None:intergenic 30.0%
TACAAACCAAGTTAAAACAG+CGG + chr4_4:49802354-49802373 None:intergenic 30.0%
! TCTAGCTTATATCAGAAACT+TGG - chr4_4:49802388-49802407 Msa0685610:five_prime_UTR 30.0%
TGTTCCAAACAAACTCCAAA+CGG - chr4_4:49799182-49799201 Msa0685610:three_prime_UTR 35.0%
!!! ACACTTTTGTTGTTTCCGTT+TGG + chr4_4:49799200-49799219 None:intergenic 35.0%
AAACGGAAACAACAAAAGTG+TGG - chr4_4:49799199-49799218 Msa0685610:three_prime_UTR 35.0%
! GAAACAACAAAAGTGTGGTT+TGG - chr4_4:49799204-49799223 Msa0685610:three_prime_UTR 35.0%
CAAAGCAACTTTCTCATTTC+CGG + chr4_4:49799240-49799259 None:intergenic 35.0%
!! TTGCTTTGGAAAATCCAAAC+TGG - chr4_4:49799252-49799271 Msa0685610:three_prime_UTR 35.0%
!! TGCTTTGGAAAATCCAAACT+GGG - chr4_4:49799253-49799272 Msa0685610:three_prime_UTR 35.0%
AGCTTATGAAATGAAGGAGA+AGG + chr4_4:49799562-49799581 None:intergenic 35.0%
!! ATTTTTAGATTAGATGGGCG+TGG - chr4_4:49799844-49799863 Msa0685610:intron 35.0%
!!! AGAGTTTTTTGGATGACTGA+TGG - chr4_4:49800065-49800084 Msa0685610:intron 35.0%
!!! GAGTTTTTTGGATGACTGAT+GGG - chr4_4:49800066-49800085 Msa0685610:intron 35.0%
GAAAGGGAAACAATACAACA+AGG - chr4_4:49800335-49800354 Msa0685610:CDS 35.0%
!!! TTCGTGGGTTTGTTTTTATC+GGG + chr4_4:49800387-49800406 None:intergenic 35.0%
!! TACCAATCGATGCCTTATTT+GGG + chr4_4:49800412-49800431 None:intergenic 35.0%
! TTACCAATCGATGCCTTATT+TGG + chr4_4:49800413-49800432 None:intergenic 35.0%
!! AAGTTCCGTGATTCTGAAAT+TGG - chr4_4:49800633-49800652 Msa0685610:CDS 35.0%
TTGTACTAAGTTCGTCGAAT+CGG + chr4_4:49800676-49800695 None:intergenic 35.0%
CAACAAGTATCCAGTACTAA+TGG + chr4_4:49800950-49800969 None:intergenic 35.0%
! CATTAGTACTGGATACTTGT+TGG - chr4_4:49800948-49800967 Msa0685610:intron 35.0%
TTGCAAAACAAAGCAGTTAC+CGG - chr4_4:49801171-49801190 Msa0685610:intron 35.0%
AGAAAACTGCTGTAAAGAAG+AGG - chr4_4:49801430-49801449 Msa0685610:intron 35.0%
AACCATCTAATCCTTTCTGT+CGG - chr4_4:49801687-49801706 Msa0685610:intron 35.0%
TATATAAATAGGAGGGTCGT+AGG + chr4_4:49801718-49801737 None:intergenic 35.0%
TACGACCCTCCTATTTATAT+AGG - chr4_4:49801717-49801736 Msa0685610:intron 35.0%
ACGACCCTCCTATTTATATA+GGG - chr4_4:49801718-49801737 Msa0685610:intron 35.0%
TATGCACCCCCTATATAAAT+AGG + chr4_4:49801729-49801748 None:intergenic 35.0%
! TTTATATAGGGGGTGCATAA+TGG - chr4_4:49801730-49801749 Msa0685610:intron 35.0%
TTTGCAGAGAAGAACTTGAA+TGG - chr4_4:49801851-49801870 Msa0685610:intron 35.0%
! TTTTCGCTGGAGAACAATTT+AGG - chr4_4:49801977-49801996 Msa0685610:intron 35.0%
TTTCGCTGGAGAACAATTTA+GGG - chr4_4:49801978-49801997 Msa0685610:intron 35.0%
TTTCGTATTACAGAGGATGA+AGG - chr4_4:49802064-49802083 Msa0685610:five_prime_UTR 35.0%
TAATCAGTTTAGTTGAAGCG+AGG + chr4_4:49802159-49802178 None:intergenic 35.0%
GCTAATCACACACAAGAAAA+GGG + chr4_4:49802236-49802255 None:intergenic 35.0%
AGCTAATCACACACAAGAAA+AGG + chr4_4:49802237-49802256 None:intergenic 35.0%
! GTTTCCGTTTGGAGTTTGTT+TGG + chr4_4:49799189-49799208 None:intergenic 40.0%
CGGAAATGAGAAAGTTGCTT+TGG - chr4_4:49799238-49799257 Msa0685610:three_prime_UTR 40.0%
! AAACAGAGGTTTTCCCAGTT+TGG + chr4_4:49799269-49799288 None:intergenic 40.0%
TGAGTCACCAACTCGTTATT+AGG - chr4_4:49799306-49799325 Msa0685610:three_prime_UTR 40.0%
AACTTGGCCTAATAACGAGT+TGG + chr4_4:49799316-49799335 None:intergenic 40.0%
AACTCGTTATTAGGCCAAGT+TGG - chr4_4:49799315-49799334 Msa0685610:three_prime_UTR 40.0%
ACTTGATGAAAGGGATGACA+AGG + chr4_4:49799820-49799839 None:intergenic 40.0%
! CAAGGTCTCAAGATTAGTCA+TGG - chr4_4:49799896-49799915 Msa0685610:CDS 40.0%
GTCAAATCATAAAGTGGGGT+TGG - chr4_4:49799928-49799947 Msa0685610:CDS 40.0%
GTGTGTTGCATGTTGGAAAT+AGG + chr4_4:49799966-49799985 None:intergenic 40.0%
!!! TGACTGATGGGTTGTTTTAC+TGG - chr4_4:49800078-49800097 Msa0685610:intron 40.0%
TGTGCTAGGTTGTAACATGA+AGG - chr4_4:49800181-49800200 Msa0685610:CDS 40.0%
GTTGTAACATGAAGGTAGCT+CGG - chr4_4:49800189-49800208 Msa0685610:CDS 40.0%
AAAAAACTCGTGGCAAGGAA+AGG - chr4_4:49800318-49800337 Msa0685610:CDS 40.0%
AAAAACTCGTGGCAAGGAAA+GGG - chr4_4:49800319-49800338 Msa0685610:CDS 40.0%
! GGAGGTGTAACTTATATAGG+CGG + chr4_4:49800363-49800382 None:intergenic 40.0%
AACCCACGAAAACCCAAATA+AGG - chr4_4:49800397-49800416 Msa0685610:CDS 40.0%
!!! TGCCTTATTTGGGTTTTCGT+GGG + chr4_4:49800402-49800421 None:intergenic 40.0%
!!! ATGCCTTATTTGGGTTTTCG+TGG + chr4_4:49800403-49800422 None:intergenic 40.0%
!! AACCCAAATAAGGCATCGAT+TGG - chr4_4:49800407-49800426 Msa0685610:CDS 40.0%
GAGAAACAATTCCCATGCAT+TGG - chr4_4:49800498-49800517 Msa0685610:CDS 40.0%
AAACAATTCCCATGCATTGG+AGG - chr4_4:49800501-49800520 Msa0685610:CDS 40.0%
GCTTGAGTGTTTGTGTGTTA+CGG - chr4_4:49800599-49800618 Msa0685610:CDS 40.0%
! GGCTTCCAGATGATTTTATG+AGG - chr4_4:49800791-49800810 Msa0685610:intron 40.0%
! TGGTGGTGATATTTCTCCAA+TGG - chr4_4:49800819-49800838 Msa0685610:intron 40.0%
! GGAACTTTGAGAGTAACCAT+TGG + chr4_4:49800838-49800857 None:intergenic 40.0%
GTTACTCTCAAAGTTCCTGA+TGG - chr4_4:49800841-49800860 Msa0685610:intron 40.0%
!!! AATTTTGGTTCCTTGATGGC+TGG - chr4_4:49800902-49800921 Msa0685610:intron 40.0%
CAAATTCATTCCAGCCATCA+AGG + chr4_4:49800915-49800934 None:intergenic 40.0%
! AGTAATGAAGCGTCTCTCTT+TGG - chr4_4:49801060-49801079 Msa0685610:intron 40.0%
TTTGCAATAGGCTAGGAGTA+AGG + chr4_4:49801158-49801177 None:intergenic 40.0%
!!! GCTTTGTTTTGCAATAGGCT+AGG + chr4_4:49801165-49801184 None:intergenic 40.0%
AGTAAGTTTATCAGCTGAGC+CGG + chr4_4:49801193-49801212 None:intergenic 40.0%
TTAAACAGATTCTGCAGTGC+TGG + chr4_4:49801237-49801256 None:intergenic 40.0%
GCACTGCAGAATCTGTTTAA+TGG - chr4_4:49801237-49801256 Msa0685610:intron 40.0%
AATAGCATAAACTGGGGTGA+AGG - chr4_4:49801270-49801289 Msa0685610:intron 40.0%
AACCAGTTGACCAGAGATAT+AGG - chr4_4:49801330-49801349 Msa0685610:intron 40.0%
AAACTGGAGACCTATATCTC+TGG + chr4_4:49801343-49801362 None:intergenic 40.0%
GCTGTAAAGAAGAGGAAATC+AGG - chr4_4:49801438-49801457 Msa0685610:intron 40.0%
!! TTTTGAAAGTGCAGATGTCC+AGG - chr4_4:49801538-49801557 Msa0685610:intron 40.0%
TCATCTTCATGTTCAGAAGG+AGG + chr4_4:49801566-49801585 None:intergenic 40.0%
TCCTTCTGAACATGAAGATG+AGG - chr4_4:49801565-49801584 Msa0685610:intron 40.0%
ACCTCATCTTCATGTTCAGA+AGG + chr4_4:49801569-49801588 None:intergenic 40.0%
ATGAGGTAGAAATGCGCAAT+AGG - chr4_4:49801582-49801601 Msa0685610:intron 40.0%
! TTTATGAAAGTGCATCCGCA+AGG - chr4_4:49801606-49801625 Msa0685610:intron 40.0%
! TGTTGCAGTTCTTTTCCTTG+CGG + chr4_4:49801624-49801643 None:intergenic 40.0%
AACAGCTGAAGAAAGAGAGA+AGG - chr4_4:49801640-49801659 Msa0685610:intron 40.0%
ACCATCTAATCCTTTCTGTC+GGG - chr4_4:49801688-49801707 Msa0685610:intron 40.0%
CGACCCTCCTATTTATATAG+GGG - chr4_4:49801719-49801738 Msa0685610:intron 40.0%
GACCCTCCTATTTATATAGG+GGG - chr4_4:49801720-49801739 Msa0685610:intron 40.0%
CACCCCCTATATAAATAGGA+GGG + chr4_4:49801725-49801744 None:intergenic 40.0%
CAAAGCAAGATGGTAGATAC+TGG + chr4_4:49801835-49801854 None:intergenic 40.0%
TTCTTCTCTGCAAAGCAAGA+TGG + chr4_4:49801845-49801864 None:intergenic 40.0%
AAGAACTTGAATGGCGTTTC+AGG - chr4_4:49801860-49801879 Msa0685610:intron 40.0%
! TAGCTCTACCACCTCTATAA+AGG + chr4_4:49801934-49801953 None:intergenic 40.0%
TTCGCTGGAGAACAATTTAG+GGG - chr4_4:49801979-49801998 Msa0685610:intron 40.0%
CGTTTACCAGTTTCACATGT+TGG + chr4_4:49802120-49802139 None:intergenic 40.0%
AAAGTTGAGCTACGACCTAT+CGG + chr4_4:49802198-49802217 None:intergenic 40.0%
ACACACAAGAAAAGGGATAC+TGG + chr4_4:49802229-49802248 None:intergenic 40.0%
GGTGAGTAGCACAAAAACAG+AGG + chr4_4:49799283-49799302 None:intergenic 45.0%
!! TAACGAGTTGGTGACTCAGT+GGG + chr4_4:49799304-49799323 None:intergenic 45.0%
!! ATAACGAGTTGGTGACTCAG+TGG + chr4_4:49799305-49799324 None:intergenic 45.0%
! TGCTTAGCTTGAAGAGTGGA+GGG + chr4_4:49799592-49799611 None:intergenic 45.0%
! TTGCTTAGCTTGAAGAGTGG+AGG + chr4_4:49799593-49799612 None:intergenic 45.0%
! CAGTTGCTTAGCTTGAAGAG+TGG + chr4_4:49799596-49799615 None:intergenic 45.0%
CACTCTTCAAGCTAAGCAAC+TGG - chr4_4:49799594-49799613 Msa0685610:CDS 45.0%
! GGTTTGAGGTTGTGGATGAT+TGG + chr4_4:49799799-49799818 None:intergenic 45.0%
! GATGACAAGGTTTGAGGTTG+TGG + chr4_4:49799807-49799826 None:intergenic 45.0%
GAAAGGGATGACAAGGTTTG+AGG + chr4_4:49799813-49799832 None:intergenic 45.0%
!!! CTGATGGGTTGTTTTACTGG+TGG - chr4_4:49800081-49800100 Msa0685610:intron 45.0%
CTCTGTATGAAGCATGTGCT+AGG - chr4_4:49800167-49800186 Msa0685610:CDS 45.0%
TAACATGAAGGTAGCTCGGT+TGG - chr4_4:49800193-49800212 Msa0685610:CDS 45.0%
!! TAGCTCGGTTGGTGAGTTAA+GGG - chr4_4:49800204-49800223 Msa0685610:CDS 45.0%
CAAGACGCACAAAAAACTCG+TGG - chr4_4:49800308-49800327 Msa0685610:CDS 45.0%
! GGCGGAGGTGTAACTTATAT+AGG + chr4_4:49800366-49800385 None:intergenic 45.0%
!!! GTGGGTTTGTTTTTATCGGG+CGG + chr4_4:49800384-49800403 None:intergenic 45.0%
GGCAGCCAATTTCAGAATCA+CGG + chr4_4:49800641-49800660 None:intergenic 45.0%
!! TCGAATCGGTTTGGCAAGAT+TGG + chr4_4:49800662-49800681 None:intergenic 45.0%
CTAAGTTCGTCGAATCGGTT+TGG + chr4_4:49800671-49800690 None:intergenic 45.0%
GTGGCGTGTAGGAATGAAAA+AGG - chr4_4:49800870-49800889 Msa0685610:intron 45.0%
GCTTCATTACTTCTTTGCGC+AGG + chr4_4:49801051-49801070 None:intergenic 45.0%
TCCTTCCAGAAATGCCAACT+CGG - chr4_4:49801302-49801321 Msa0685610:intron 45.0%
GACCTATATCTCTGGTCAAC+TGG + chr4_4:49801335-49801354 None:intergenic 45.0%
ACCCGACAGAAAGGATTAGA+TGG + chr4_4:49801692-49801711 None:intergenic 45.0%
GCACCCCCTATATAAATAGG+AGG + chr4_4:49801726-49801745 None:intergenic 45.0%
AAATCTCTGATGGGAGACAG+TGG - chr4_4:49801897-49801916 Msa0685610:intron 45.0%
TGGTAGAGCTAAGTTAAGCC+AGG - chr4_4:49801943-49801962 Msa0685610:intron 45.0%
GGTAGAGCTAAGTTAAGCCA+GGG - chr4_4:49801944-49801963 Msa0685610:intron 45.0%
GTAGAGCTAAGTTAAGCCAG+GGG - chr4_4:49801945-49801964 Msa0685610:intron 45.0%
CTGGAGAACAATTTAGGGGA+AGG - chr4_4:49801983-49802002 Msa0685610:intron 45.0%
!! ACATGTTGGTTCTGCTGCAA+CGG + chr4_4:49802106-49802125 None:intergenic 45.0%
GCAGAACCAACATGTGAAAC+TGG - chr4_4:49802111-49802130 Msa0685610:five_prime_UTR 45.0%
!!! AGCTTGCCGCTGTTTTAACT+TGG - chr4_4:49802345-49802364 Msa0685610:five_prime_UTR 45.0%
!! GTAGCTCGGTTGGTGAGTTA+AGG - chr4_4:49800203-49800222 Msa0685610:CDS 50.0%
CGCACAAAAAACTCGTGGCA+AGG - chr4_4:49800313-49800332 Msa0685610:CDS 50.0%
!!! GGTTTGTTTTTATCGGGCGG+AGG + chr4_4:49800381-49800400 None:intergenic 50.0%
CAATTCCCATGCATTGGAGG+AGG - chr4_4:49800504-49800523 Msa0685610:CDS 50.0%
AGGTTCCTCCTCCAATGCAT+GGG + chr4_4:49800512-49800531 None:intergenic 50.0%
AGGCTAGGAGTAAGGTTCGT+AGG + chr4_4:49801150-49801169 None:intergenic 50.0%
! AACAGATTCTGCAGTGCTGG+AGG + chr4_4:49801234-49801253 None:intergenic 50.0%
AGCATAAACTGGGGTGAAGG+TGG - chr4_4:49801273-49801292 Msa0685610:intron 50.0%
GCATAAACTGGGGTGAAGGT+GGG - chr4_4:49801274-49801293 Msa0685610:intron 50.0%
! ACCGAGTTGGCATTTCTGGA+AGG + chr4_4:49801306-49801325 None:intergenic 50.0%
! GTCTACCGAGTTGGCATTTC+TGG + chr4_4:49801310-49801329 None:intergenic 50.0%
CAACTGGTTGTCTACCGAGT+TGG + chr4_4:49801319-49801338 None:intergenic 50.0%
TGAAGAGTTGAAGTTGCGCG+CGG - chr4_4:49801389-49801408 Msa0685610:intron 50.0%
CATGTTCAGAAGGAGGTTCC+TGG + chr4_4:49801559-49801578 None:intergenic 50.0%
CCTCTATAAAGGCAGCGAAC+TGG + chr4_4:49801923-49801942 None:intergenic 50.0%
CCAGTTCGCTGCCTTTATAG+AGG - chr4_4:49801920-49801939 Msa0685610:intron 50.0%
GTTCGCTGCCTTTATAGAGG+TGG - chr4_4:49801923-49801942 Msa0685610:intron 50.0%
CGATGTGTGTGTGTTTGAGC+TGG - chr4_4:49802006-49802025 Msa0685610:CDS 50.0%
GTTTGAGCTGGTTGCAACGA+AGG - chr4_4:49802018-49802037 Msa0685610:CDS 50.0%
AACGAAGGAAGTAGTGCTGC+AGG - chr4_4:49802033-49802052 Msa0685610:exon 50.0%
GAAGCGAGGTGATGCTGAAA+CGG + chr4_4:49802145-49802164 None:intergenic 50.0%
CAGGTTCCTCCTCCAATGCA+TGG + chr4_4:49800513-49800532 None:intergenic 55.0%
AAGTTCCTGATGGCAGTGCG+TGG - chr4_4:49800851-49800870 Msa0685610:intron 55.0%
! AGATTCTGCAGTGCTGGAGG+CGG + chr4_4:49801231-49801250 None:intergenic 55.0%
CGTAGGACAACCCGACAGAA+AGG + chr4_4:49801701-49801720 None:intergenic 55.0%
GAGCTAAGTTAAGCCAGGGG+TGG - chr4_4:49801948-49801967 Msa0685610:intron 55.0%
GCGAAAACTCATACCACCCC+TGG + chr4_4:49801964-49801983 None:intergenic 55.0%
! GGGGTGGTATGAGTTTTCGC+TGG - chr4_4:49801964-49801983 Msa0685610:intron 55.0%
GCGCGCGGCTACTGATGAAA+AGG - chr4_4:49801404-49801423 Msa0685610:intron 60.0%
TGCAACGGCTGTGGGCTCAA+CGG + chr4_4:49802091-49802110 None:intergenic 60.0%
GGTTCTGCTGCAACGGCTGT+GGG + chr4_4:49802099-49802118 None:intergenic 60.0%
! TGGTTCTGCTGCAACGGCTG+TGG + chr4_4:49802100-49802119 None:intergenic 60.0%
ACACGCCACGCACTGCCATC+AGG + chr4_4:49800859-49800878 None:intergenic 65.0%
GATGGCAGTGCGTGGCGTGT+AGG - chr4_4:49800859-49800878 Msa0685610:intron 65.0%
GGAGGCGGACGAGACTTGCA+AGG + chr4_4:49801216-49801235 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49799176 49802423 49799176 ID=Msa0685610;Name=Msa0685610
chr4_4 mRNA 49799176 49802423 49799176 ID=Msa0685610-mRNA-1;Parent=Msa0685610;Name=Msa0685610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=380|1|1|1|0.66|0.75|4|237|426
chr4_4 exon 49799176 49799763 49799176 ID=Msa0685610-mRNA-1:exon:12602;Parent=Msa0685610-mRNA-1
chr4_4 exon 49799848 49800047 49799848 ID=Msa0685610-mRNA-1:exon:12601;Parent=Msa0685610-mRNA-1
chr4_4 exon 49800140 49800809 49800140 ID=Msa0685610-mRNA-1:exon:12600;Parent=Msa0685610-mRNA-1
chr4_4 exon 49801984 49802423 49801984 ID=Msa0685610-mRNA-1:exon:12599;Parent=Msa0685610-mRNA-1
chr4_4 five_prime_UTR 49802044 49802423 49802044 ID=Msa0685610-mRNA-1:five_prime_utr;Parent=Msa0685610-mRNA-1
chr4_4 CDS 49801984 49802043 49801984 ID=Msa0685610-mRNA-1:cds;Parent=Msa0685610-mRNA-1
chr4_4 CDS 49800140 49800809 49800140 ID=Msa0685610-mRNA-1:cds;Parent=Msa0685610-mRNA-1
chr4_4 CDS 49799848 49800047 49799848 ID=Msa0685610-mRNA-1:cds;Parent=Msa0685610-mRNA-1
chr4_4 CDS 49799413 49799763 49799413 ID=Msa0685610-mRNA-1:cds;Parent=Msa0685610-mRNA-1
chr4_4 three_prime_UTR 49799176 49799412 49799176 ID=Msa0685610-mRNA-1:three_prime_utr;Parent=Msa0685610-mRNA-1
Gene Sequence

>Msa0685610

ATGCCTTCTCCTTCATTTCATAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGCAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGTGGTGATATTTCTCCAATGGTTACTCTCAAAGTTCCTGATGGCAGTGCGTGGCGTGTAGGAATGAAAAAGGTAGACAACAAATTTTGGTTCCTTGATGGCTGGAATGAATTTGTTCAAAAATATTCCATTAGTACTGGATACTTGTTGGTATTCAAATATGAAGGAAAGTCGTATTTCACTGTTAATATTTTTAGTTTGCCTACATCTGAGATTAACTATCAATCACCTGCGCAAAGAAGTAATGAAGCGTCTCTCTTTGGAAAACGTCTTACTATTTTCGAAGAAATGGAAGATGAAGATTCTGTTGAAATCATGGACTCGTCGCCTACGAACCTTACTCCTAGCCTATTGCAAAACAAAGCAGTTACCGGCTCAGCTGATAAACTTACTCCTTGCAAGTCTCGTCCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGTGAAGGTGGGAATACTCCTTCCAGAAATGCCAACTCGGTAGACAACCAGTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTAATGAAGAGTTGAAGTTGCGCGCGGCTACTGATGAAAAGGTTAAGAAAACTGCTGTAAAGAAGAGGAAATCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCATCCGCAAGGAAAAGAACTGCAACAGCTGAAGAAAGAGAGAAGGCCATCAATGCAGCAAAATCATTTGAACCATCTAATCCTTTCTGTCGGGTTGTCCTACGACCCTCCTATTTATATAGGGGGTGCATAATGTATCTACCATCTTGCTTTGCAGAGAAGAACTTGAATGGCGTTTCAGGAATTATCAAACTTCAAATCTCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAGGTGGTAGAGCTAAGTTAAGCCAGGGGTGGTATGAGTTTTCGCTGGAGAACAATTTAGGGGAAGGCGATGTGTGTGTGTTTGAGCTGGTTGCAACGAAGGAAGTAGTGCTGCAGGTTACTGTATTTCGTATTACAGAGGATGAAGGACCGTTGAGCCCACAGCCGTTGCAGCAGAACCAACATGTGAAACTGGTAAACGTTCCGTTTCAGCATCACCTCGCTTCAACTAAACTGATTAGAAATTAA

Protein sequence

>Msa0685610

MPSPSFHKLVLPSTLQAKQLRLPDDFMRKYGGDISPMVTLKVPDGSAWRVGMKKVDNKFWFLDGWNEFVQKYSISTGYLLVFKYEGKSYFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMDSSPTNLTPSLLQNKAVTGSADKLTPCKSRPPPALQNLFNGSKLNSINWGEGGNTPSRNANSVDNQLTRDIGLQFNVVEFKKSNEELKLRAATDEKVKKTAVKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKSFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWYEFSLENNLGEGDVCVFELVATKEVVLQVTVFRITEDEGPLSPQPLQQNQHVKLVNVPFQHHLASTKLIRN*