AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0541880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541880 MtrunA17_Chr4g0033961 93.007 429 13 2 1 412 1 429 0.0 810
Msa0541880 MtrunA17_Chr1g0162441 58.581 437 149 8 2 412 3 433 3.28e-179 506
Msa0541880 MtrunA17_Chr1g0162411 39.594 394 176 12 4 342 5 391 2.49e-76 244
Msa0541880 MtrunA17_Chr7g0233571 40.909 110 63 1 1 110 5 112 4.32e-23 96.7
Msa0541880 MtrunA17_Chr3g0103151 37.778 135 74 2 6 140 12 136 7.50e-23 94.4
Msa0541880 MtrunA17_Chr8g0390841 40.741 108 64 0 6 113 39 146 5.63e-22 97.8
Msa0541880 MtrunA17_Chr8g0390841 35.593 118 58 5 281 385 229 341 2.00e-13 72.0
Msa0541880 MtrunA17_Chr7g0233561 41.414 99 58 0 6 104 18 116 1.09e-21 95.1
Msa0541880 MtrunA17_Chr1g0162421 58.621 58 24 0 20 77 7 64 1.89e-21 87.4
Msa0541880 MtrunA17_Chr3g0103181 35.606 132 75 2 6 137 12 133 6.45e-21 92.0
Msa0541880 MtrunA17_Chr1g0162431 67.925 53 17 0 327 379 5 57 9.71e-21 85.5
Msa0541880 MtrunA17_Chr3g0131891 38.393 112 67 1 6 117 19 128 1.37e-20 92.0
Msa0541880 MtrunA17_Chr3g0131891 34.146 123 61 3 277 379 186 308 1.28e-13 71.6
Msa0541880 MtrunA17_Chr3g0103191 34.848 132 76 2 6 137 12 133 2.90e-20 89.7
Msa0541880 MtrunA17_Chr7g0233541 41.667 96 54 1 22 115 2 97 7.76e-20 89.4
Msa0541880 MtrunA17_Chr5g0419201 34.483 145 94 1 3 146 13 157 1.27e-19 86.3
Msa0541880 MtrunA17_Chr1g0163071 37.500 120 68 2 22 141 2 114 1.39e-19 88.6
Msa0541880 MtrunA17_Chr1g0163071 35.897 117 56 3 283 386 187 297 1.71e-14 73.9
Msa0541880 MtrunA17_Chr3g0103171 36.752 117 66 1 21 137 5 113 1.80e-19 87.4
Msa0541880 MtrunA17_Chr3g0077411 36.364 110 70 0 3 112 22 131 2.94e-19 89.7
Msa0541880 MtrunA17_Chr3g0077411 36.893 103 64 1 3 104 259 361 2.36e-17 84.0
Msa0541880 MtrunA17_Chr3g0077461 38.235 102 63 0 3 104 234 335 3.49e-19 89.4
Msa0541880 MtrunA17_Chr3g0077461 36.957 92 58 0 21 112 22 113 4.25e-16 80.1
Msa0541880 MtrunA17_Chr4g0009491 39.216 102 62 0 3 104 222 323 9.42e-19 87.8
Msa0541880 MtrunA17_Chr4g0009491 35.294 85 55 0 20 104 11 95 8.55e-12 66.6
Msa0541880 MtrunA17_Chr3g0077451 39.785 93 56 0 20 112 10 102 1.59e-18 84.3
Msa0541880 MtrunA17_Chr3g0077451 35.938 128 64 5 267 377 111 237 2.27e-11 63.5
Msa0541880 MtrunA17_Chr1g0154211 27.708 397 214 16 11 378 27 379 1.93e-18 86.7
Msa0541880 MtrunA17_Chr7g0233521 42.697 89 49 1 22 110 2 88 3.22e-18 84.3
Msa0541880 MtrunA17_Chr5g0429931 41.667 84 49 0 21 104 10 93 1.25e-17 82.0
Msa0541880 MtrunA17_Chr5g0429931 36.029 136 62 4 263 374 108 242 2.40e-13 69.7
Msa0541880 MtrunA17_Chr3g0077381 38.235 102 63 0 3 104 244 345 2.40e-17 83.6
Msa0541880 MtrunA17_Chr3g0077381 36.559 93 59 0 20 112 34 126 1.66e-14 75.1
Msa0541880 MtrunA17_Chr7g0233531 39.326 89 52 1 22 110 2 88 8.49e-17 80.1
Msa0541880 MtrunA17_Chr1g0208771 33.058 121 66 1 21 141 12 117 1.42e-16 81.3
Msa0541880 MtrunA17_Chr1g0208771 35.659 129 65 4 270 385 178 301 1.54e-14 75.1
Msa0541880 MtrunA17_Chr1g0154041 39.130 92 55 1 4 95 14 104 6.42e-16 79.7
Msa0541880 MtrunA17_Chr3g0077361 33.981 103 67 1 3 104 37 139 7.64e-16 79.3
Msa0541880 MtrunA17_Chr3g0077361 35.714 126 68 4 264 377 380 504 5.24e-13 70.5
Msa0541880 MtrunA17_Chr3g0077361 37.500 72 45 0 3 74 286 357 2.63e-12 68.6
Msa0541880 MtrunA17_Chr3g0077361 36.735 147 72 8 274 403 157 299 4.90e-11 64.3
Msa0541880 MtrunA17_Chr1g0154191 24.460 417 214 19 9 395 24 369 2.42e-15 77.0
Msa0541880 MtrunA17_Chr6g0467351 37.500 112 67 2 6 116 15 124 7.37e-15 73.6
Msa0541880 MtrunA17_Chr1g0154111 24.167 360 225 6 18 370 38 356 1.30e-14 75.9
Msa0541880 MtrunA17_Chr3g0077421 37.410 139 65 6 257 377 65 199 5.50e-14 70.5
Msa0541880 MtrunA17_Chr3g0077441 37.410 139 65 6 257 377 65 199 5.50e-14 70.5
Msa0541880 MtrunA17_Chr1g0163251 37.624 101 57 2 4 104 7 101 1.51e-13 71.6
Msa0541880 MtrunA17_Chr1g0163181 38.614 101 56 2 4 104 7 101 1.56e-13 72.0
Msa0541880 MtrunA17_Chr1g0163191 37.624 101 57 2 4 104 7 101 2.61e-13 67.4
Msa0541880 MtrunA17_Chr1g0154161 38.889 90 55 0 6 95 30 119 1.90e-12 67.8
Msa0541880 MtrunA17_Chr1g0154101 39.535 86 51 1 10 95 187 271 3.55e-12 68.6
Msa0541880 MtrunA17_Chr1g0154101 37.778 90 56 0 6 95 25 114 2.61e-11 65.9
Msa0541880 MtrunA17_Chr3g0077431 35.938 128 64 5 267 377 72 198 7.27e-12 64.3
Msa0541880 MtrunA17_Chr1g0154131 41.026 78 46 0 18 95 194 271 8.36e-12 66.6
Msa0541880 MtrunA17_Chr1g0154131 37.778 90 55 1 6 95 26 114 1.80e-11 65.9
Msa0541880 MtrunA17_Chr1g0171611 37.374 99 60 1 6 104 9 105 2.16e-11 64.3
Msa0541880 MtrunA17_Chr1g0154171 38.889 90 54 1 7 95 22 111 2.53e-11 64.7
Msa0541880 MtrunA17_Chr1g0163231 36.364 99 61 1 6 104 9 105 6.23e-11 63.2
Msa0541880 MtrunA17_Chr1g0154151 40.541 74 44 0 22 95 20 93 6.59e-11 63.2
Msa0541880 MtrunA17_Chr1g0154251 38.462 78 48 0 18 95 38 115 7.79e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541880 AT3G18990.1 46.819 393 139 8 1 377 1 339 6.16e-110 327
Msa0541880 AT3G18990.2 46.617 399 140 9 1 380 1 345 5.20e-109 325
Msa0541880 AT1G49480.3 55.618 178 57 4 216 377 53 224 9.39e-57 186
Msa0541880 AT1G49480.1 55.618 178 57 4 216 377 53 224 9.39e-57 186
Msa0541880 AT1G49480.2 55.618 178 57 4 216 377 53 224 9.39e-57 186
Msa0541880 AT4G01580.1 39.806 103 62 0 2 104 26 128 2.61e-21 91.3
Msa0541880 AT3G18960.2 37.864 103 64 0 2 104 26 128 1.62e-20 89.4
Msa0541880 AT3G18960.1 37.864 103 64 0 2 104 26 128 1.73e-20 89.7
Msa0541880 AT1G49475.1 33.803 142 87 3 2 137 27 167 4.88e-18 82.0
Msa0541880 AT3G18960.3 34.524 84 55 0 21 104 8 91 1.22e-13 69.3
Msa0541880 AT2G16210.2 34.314 102 62 4 5 102 18 118 8.82e-11 62.0

Find 122 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTCATCAAATGCTTTA+AGG 0.135808 4_1:+25896257 Msa0541880:five_prime_UTR
GTCTACCGAGTTGGCATTTC+TGG 0.137922 4_1:-25898060 None:intergenic
CAAAGCAACTTTCTCATTTC+CGG 0.157107 4_1:-25895997 None:intergenic
ATGCTTTAAGGCTTTGATTT+TGG 0.173014 4_1:+25896269 Msa0541880:five_prime_UTR
AAAAGGTAGACAACAAATTT+TGG 0.211575 4_1:+25897640 Msa0541880:CDS
AAGAACTTGAATGGCGTTTC+AGG 0.211639 4_1:+25898613 Msa0541880:CDS
GCACTGCAGAATCTGTTTAA+TGG 0.280689 4_1:+25897990 Msa0541880:CDS
CTAAACTTAATAGCATAAAC+TGG 0.308905 4_1:+25898015 Msa0541880:CDS
TTTCATCTAATTTCTTCAAA+TGG 0.330336 4_1:+25899011 Msa0541880:three_prime_UTR
TAAACTCAACTACATTAAAC+TGG 0.334276 4_1:-25898109 None:intergenic
AGTAATGAAGCGTCTCTCTT+TGG 0.337462 4_1:+25897813 Msa0541880:CDS
TTTCGCTGGAGAACAATTTA+GGG 0.350563 4_1:+25898731 Msa0541880:CDS
TTGCTTTGGAAAATCCAAAC+TGG 0.371344 4_1:+25896012 Msa0541880:five_prime_UTR
CATGTTCAGAAGGAGGTTCC+TGG 0.372328 4_1:-25898309 None:intergenic
ATTGAAAGATGAAAGCTTTG+AGG 0.379325 4_1:-25896228 None:intergenic
CGGAAATGAGAAAGTTGCTT+TGG 0.380233 4_1:+25895998 Msa0541880:five_prime_UTR
AGCTAATCACACACAAGAAA+AGG 0.380477 4_1:-25898987 None:intergenic
TTCATCTAATTTCTTCAAAT+GGG 0.391881 4_1:+25899012 Msa0541880:three_prime_UTR
CAACAAGTATCCAGTACTAA+TGG 0.397395 4_1:-25897700 None:intergenic
TAGCTCTACCACCTCTATAA+AGG 0.406566 4_1:-25898684 None:intergenic
TGAGTCACCAACTCGTTATT+AGG 0.410373 4_1:+25896066 Msa0541880:five_prime_UTR
GCAGAACCAACATGTGAAAC+TGG 0.412096 4_1:+25898864 Msa0541880:CDS
GACCTATATCTCTGGTCAAC+TGG 0.412834 4_1:-25898085 None:intergenic
CATTAGTACTGGATACTTGT+TGG 0.415047 4_1:+25897701 Msa0541880:CDS
GTTTCCGTTTGGAGTTTGTT+TGG 0.420376 4_1:-25895946 None:intergenic
TGGTTCTGCTGCAACGGCTG+TGG 0.421147 4_1:-25898850 None:intergenic
TTGCAAAACAAAGCAGTTAC+CGG 0.427667 4_1:+25897924 Msa0541880:CDS
TGAAGATTCTGTTGAAATCA+TGG 0.428155 4_1:+25897869 Msa0541880:CDS
ATGAGGTAGAAATGCGCAAT+AGG 0.433073 4_1:+25898335 Msa0541880:CDS
GAAACAACAAAAGTGTGGTT+TGG 0.438389 4_1:+25895964 Msa0541880:five_prime_UTR
ACACACAAGAAAAGGGATAC+TGG 0.440613 4_1:-25898979 None:intergenic
TATTTCCTCATAAAATCATC+TGG 0.445116 4_1:-25897549 None:intergenic
GCTGTAAAGAAGAGGAAATC+AGG 0.445746 4_1:+25898191 Msa0541880:CDS
GGTTCTGCTGCAACGGCTGT+GGG 0.447673 4_1:-25898849 None:intergenic
AACCAGTTGACCAGAGATAT+AGG 0.450024 4_1:+25898083 Msa0541880:CDS
CACTCTTCAAGCTAAGCAAC+TGG 0.450976 4_1:+25896354 Msa0541880:CDS
AACCATCTAATCCTTTCTGT+CGG 0.454042 4_1:+25898440 Msa0541880:CDS
GTGGCGTGTAGGAATGAAAA+AGG 0.456416 4_1:+25897623 Msa0541880:CDS
ACCATCTAATCCTTTCTGTC+GGG 0.457399 4_1:+25898441 Msa0541880:CDS
AGCTTTCATCTTTCAATCAA+AGG 0.458663 4_1:+25896234 Msa0541880:five_prime_UTR
ATCAAACTTCAAATCTCTGA+TGG 0.460034 4_1:+25898640 Msa0541880:CDS
ACCCGACAGAAAGGATTAGA+TGG 0.462119 4_1:-25898442 None:intergenic
GCTTTCATCTTTCAATCAAA+GGG 0.464016 4_1:+25896235 Msa0541880:five_prime_UTR
CCAGTTCGCTGCCTTTATAG+AGG 0.464193 4_1:+25898673 Msa0541880:CDS
CCTCTATAAAGGCAGCGAAC+TGG 0.468295 4_1:-25898673 None:intergenic
CAAATTCATTCCAGCCATCA+AGG 0.469351 4_1:-25897665 None:intergenic
TTAAACAGATTCTGCAGTGC+TGG 0.470577 4_1:-25897987 None:intergenic
GAGTTTGTTTGGAACATAGT+TGG 0.479789 4_1:-25895935 None:intergenic
TGGTAGAGCTAAGTTAAGCC+AGG 0.481112 4_1:+25898696 Msa0541880:CDS
TTGTTGGTATTCAAATATGA+AGG 0.488579 4_1:+25897717 Msa0541880:CDS
ACATGTTGGTTCTGCTGCAA+CGG 0.490310 4_1:-25898856 None:intergenic
ACACGCCACGCACTGCCATC+AGG 0.495919 4_1:-25897609 None:intergenic
TCTAGCTTATATCAGAAACT+TGG 0.498866 4_1:+25899141 Msa0541880:three_prime_UTR
TTTGCAATAGGCTAGGAGTA+AGG 0.503132 4_1:-25897908 None:intergenic
AGAACAAGCTTATGAAATGA+AGG 0.504843 4_1:-25896325 None:intergenic
CGTTTACCAGTTTCACATGT+TGG 0.506129 4_1:-25898870 None:intergenic
TTTGCAGAGAAGAACTTGAA+TGG 0.506953 4_1:+25898604 Msa0541880:CDS
AGCATAAACTGGGGTGAAGG+TGG 0.512276 4_1:+25898026 Msa0541880:CDS
AAGTCATCATCTTGAAATGT+TGG 0.517522 4_1:-25899055 None:intergenic
GCTAATCACACACAAGAAAA+GGG 0.517703 4_1:-25898986 None:intergenic
CGATGTGTGTGTGTTTGAGC+TGG 0.519261 4_1:+25898759 Msa0541880:CDS
GCGCGCGGCTACTGATGAAA+AGG 0.522792 4_1:+25898157 Msa0541880:CDS
GAAGCGAGGTGATGCTGAAA+CGG 0.522835 4_1:-25898895 None:intergenic
ACCTCATCTTCATGTTCAGA+AGG 0.527271 4_1:-25898319 None:intergenic
TGTTCCAAACAAACTCCAAA+CGG 0.528885 4_1:+25895942 Msa0541880:five_prime_UTR
AAACTGGAGACCTATATCTC+TGG 0.534467 4_1:-25898093 None:intergenic
TGGTGGTGATATTTCTCCAA+TGG 0.535973 4_1:+25897572 Msa0541880:CDS
TTTCGTATTACAGAGGATGA+AGG 0.541809 4_1:+25898817 Msa0541880:CDS
TGCTTAGCTTGAAGAGTGGA+GGG 0.543127 4_1:-25896349 None:intergenic
AAAGTTGAGCTACGACCTAT+CGG 0.547743 4_1:-25898948 None:intergenic
AACTCGTTATTAGGCCAAGT+TGG 0.549255 4_1:+25896075 Msa0541880:five_prime_UTR
AACGAAGGAAGTAGTGCTGC+AGG 0.550293 4_1:+25898786 Msa0541880:CDS
CTGGAGAACAATTTAGGGGA+AGG 0.550360 4_1:+25898736 Msa0541880:CDS
GATGGCAGTGCGTGGCGTGT+AGG 0.551984 4_1:+25897612 Msa0541880:CDS
AGTAAGTTTATCAGCTGAGC+CGG 0.556292 4_1:-25897943 None:intergenic
AGGCTAGGAGTAAGGTTCGT+AGG 0.558211 4_1:-25897900 None:intergenic
AATAGCATAAACTGGGGTGA+AGG 0.559689 4_1:+25898023 Msa0541880:CDS
GCGAAAACTCATACCACCCC+TGG 0.559736 4_1:-25898714 None:intergenic
TTCTTCTCTGCAAAGCAAGA+TGG 0.561035 4_1:-25898595 None:intergenic
CAACTGGTTGTCTACCGAGT+TGG 0.563166 4_1:-25898069 None:intergenic
TGCAACGGCTGTGGGCTCAA+CGG 0.564438 4_1:-25898841 None:intergenic
TGCTTTGGAAAATCCAAACT+GGG 0.565994 4_1:+25896013 Msa0541880:five_prime_UTR
GGTAGAGCTAAGTTAAGCCA+GGG 0.566840 4_1:+25898697 Msa0541880:CDS
CGTAGGACAACCCGACAGAA+AGG 0.567258 4_1:-25898451 None:intergenic
TGATAGTTAATCTCAGATGT+AGG 0.567814 4_1:-25897774 None:intergenic
TTGCTTAGCTTGAAGAGTGG+AGG 0.568784 4_1:-25896350 None:intergenic
AGAAAACTGCTGTAAAGAAG+AGG 0.569808 4_1:+25898183 Msa0541880:CDS
AGATTCTGCAGTGCTGGAGG+CGG 0.572818 4_1:-25897981 None:intergenic
AGCTTATGAAATGAAGGAGA+AGG 0.572983 4_1:-25896319 None:intergenic
TCCTTCCAGAAATGCCAACT+CGG 0.578453 4_1:+25898055 Msa0541880:CDS
ACCGAGTTGGCATTTCTGGA+AGG 0.582778 4_1:-25898056 None:intergenic
TAAACTTAATAGCATAAACT+GGG 0.585444 4_1:+25898016 Msa0541880:CDS
TAACGAGTTGGTGACTCAGT+GGG 0.589671 4_1:-25896061 None:intergenic
GCTTCATTACTTCTTTGCGC+AGG 0.592136 4_1:-25897801 None:intergenic
GTTCGCTGCCTTTATAGAGG+TGG 0.593487 4_1:+25898676 Msa0541880:CDS
TCAAACTTCAAATCTCTGAT+GGG 0.594893 4_1:+25898641 Msa0541880:CDS
TCCTTCTGAACATGAAGATG+AGG 0.595862 4_1:+25898318 Msa0541880:CDS
GGAACTTTGAGAGTAACCAT+TGG 0.597271 4_1:-25897588 None:intergenic
AACAGCTGAAGAAAGAGAGA+AGG 0.598211 4_1:+25898393 Msa0541880:CDS
AACTTGGCCTAATAACGAGT+TGG 0.599053 4_1:-25896073 None:intergenic
CAGTTGCTTAGCTTGAAGAG+TGG 0.602007 4_1:-25896353 None:intergenic
TCATCTTCATGTTCAGAAGG+AGG 0.602398 4_1:-25898316 None:intergenic
AAATTAACTTTGTTTCCGAT+AGG 0.605865 4_1:+25898933 Msa0541880:exon
AACAGATTCTGCAGTGCTGG+AGG 0.607091 4_1:-25897984 None:intergenic
GCATAAACTGGGGTGAAGGT+GGG 0.609417 4_1:+25898027 Msa0541880:CDS
GTTTGAGCTGGTTGCAACGA+AGG 0.613778 4_1:+25898771 Msa0541880:CDS
TTCGCTGGAGAACAATTTAG+GGG 0.616292 4_1:+25898732 Msa0541880:CDS
GGAGGCGGACGAGACTTGCA+AGG 0.616432 4_1:-25897966 None:intergenic
TACTGTATTTCGTATTACAG+AGG 0.616530 4_1:+25898810 Msa0541880:CDS
TAATCAGTTTAGTTGAAGCG+AGG 0.620183 4_1:-25898909 None:intergenic
TTTATGAAAGTGCATCCGCA+AGG 0.624536 4_1:+25898359 Msa0541880:CDS
AAGTTCCTGATGGCAGTGCG+TGG 0.628489 4_1:+25897604 Msa0541880:CDS
GTTACTCTCAAAGTTCCTGA+TGG 0.635054 4_1:+25897594 Msa0541880:CDS
AAATCTCTGATGGGAGACAG+TGG 0.637373 4_1:+25898650 Msa0541880:CDS
ATAACGAGTTGGTGACTCAG+TGG 0.662512 4_1:-25896062 None:intergenic
TACAAACCAAGTTAAAACAG+CGG 0.671161 4_1:-25899104 None:intergenic
GAGCTAAGTTAAGCCAGGGG+TGG 0.681213 4_1:+25898701 Msa0541880:CDS
AAAGAATATTGAGAGAGTGA+TGG 0.682434 4_1:+25896174 Msa0541880:five_prime_UTR
AAACGGAAACAACAAAAGTG+TGG 0.691612 4_1:+25895959 Msa0541880:five_prime_UTR
TGAAGAGTTGAAGTTGCGCG+CGG 0.706550 4_1:+25898142 Msa0541880:CDS
GTAGAGCTAAGTTAAGCCAG+GGG 0.733227 4_1:+25898698 Msa0541880:CDS
AAACTTAATAGCATAAACTG+GGG 0.737966 4_1:+25898017 Msa0541880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTGTAG+TGG + chr4_1:25896455-25896474 Msa0541880:intron 10.0%
!!! TATTTATTTATTTTTGTAGT+GGG + chr4_1:25896456-25896475 Msa0541880:intron 10.0%
!!! TTTAAATTTTTAGATTAGAT+GGG + chr4_1:25896591-25896610 Msa0541880:intron 10.0%
!!! TCGATTTTTTTTTTTTTAAA+TGG + chr4_1:25897012-25897031 Msa0541880:intron 10.0%
!!! ATCTTTTGTGTATTATTTTT+TGG + chr4_1:25896393-25896412 Msa0541880:intron 15.0%
!! AAAATTTAAACTTGATGAAA+GGG - chr4_1:25896581-25896600 None:intergenic 15.0%
!! AAAAATTTAAACTTGATGAA+AGG - chr4_1:25896582-25896601 None:intergenic 15.0%
!!! GTTTAAATTTTTAGATTAGA+TGG + chr4_1:25896590-25896609 Msa0541880:intron 15.0%
!!! AAAAGAGTCATAAATATTTT+TGG + chr4_1:25896623-25896642 Msa0541880:intron 15.0%
!!! AAAGAGTCATAAATATTTTT+GGG + chr4_1:25896624-25896643 Msa0541880:intron 15.0%
!! ATATAATTAATAGTGTACTT+TGG + chr4_1:25896883-25896902 Msa0541880:intron 15.0%
!! AAAAAAAAAAAAATCGAACT+CGG - chr4_1:25897009-25897028 None:intergenic 15.0%
!!! ACACAAAAGATTGAATTTTT+AGG - chr4_1:25896384-25896403 None:intergenic 20.0%
!!! TTTAAAGTCAAATCATAAAG+TGG + chr4_1:25896674-25896693 Msa0541880:intron 20.0%
!! TTAAAGTCAAATCATAAAGT+GGG + chr4_1:25896675-25896694 Msa0541880:intron 20.0%
!!! AAAATCCTTTTTTTTTTGTG+TGG - chr4_1:25896781-25896800 None:intergenic 20.0%
!!! AACTTGAAATTAGAGTTTTT+TGG + chr4_1:25896805-25896824 Msa0541880:intron 20.0%
!! ACATTGAAATAGTTTAAATC+AGG + chr4_1:25896978-25896997 Msa0541880:intron 20.0%
!! AAAAAAAAAAAATCGAACTC+GGG - chr4_1:25897008-25897027 None:intergenic 20.0%
!! TAAACTTAATAGCATAAACT+GGG + chr4_1:25898016-25898035 Msa0541880:CDS 20.0%
!! CTTAGTTATTGTTTATAACT+CGG + chr4_1:25898215-25898234 Msa0541880:intron 20.0%
!! TTTCATCTAATTTCTTCAAA+TGG + chr4_1:25899011-25899030 Msa0541880:three_prime_UTR 20.0%
!! TTCATCTAATTTCTTCAAAT+GGG + chr4_1:25899012-25899031 Msa0541880:three_prime_UTR 20.0%
! ATAAAAAAAAGACACCAACT+TGG - chr4_1:25896092-25896111 None:intergenic 25.0%
!!! CAATGGTTTTTACTTTTTGA+AGG - chr4_1:25896118-25896137 None:intergenic 25.0%
!!! GCTTTTTTGACAAAAAACAA+TGG - chr4_1:25896135-25896154 None:intergenic 25.0%
!! TTCTTAGATGAATTTTTGCA+TGG + chr4_1:25896431-25896450 Msa0541880:intron 25.0%
!!! AATTTTGATAGAGTGAAGAA+AGG + chr4_1:25896487-25896506 Msa0541880:intron 25.0%
!!! ATTTTGATAGAGTGAAGAAA+GGG + chr4_1:25896488-25896507 Msa0541880:intron 25.0%
!!! AAAGGGTTTGATAATTTTTC+TGG + chr4_1:25896505-25896524 Msa0541880:intron 25.0%
!!! AAGGGTTTGATAATTTTTCT+GGG + chr4_1:25896506-25896525 Msa0541880:intron 25.0%
!!! TCATAAATATTTTTGGGTCA+AGG + chr4_1:25896630-25896649 Msa0541880:intron 25.0%
! TAAAGTCAAATCATAAAGTG+GGG + chr4_1:25896676-25896695 Msa0541880:intron 25.0%
! ATTCTCCACACAAAAAAAAA+AGG + chr4_1:25896773-25896792 Msa0541880:intron 25.0%
! TTGAAATAGTTTAAATCAGG+AGG + chr4_1:25896981-25897000 Msa0541880:intron 25.0%
!! AAAAGATATAGGTTTAGTTC+AGG - chr4_1:25897285-25897304 None:intergenic 25.0%
! GATAGATTCGAAAAAGATAT+AGG - chr4_1:25897296-25897315 None:intergenic 25.0%
!!! TTGCACTTTTTGAAATGAAA+TGG + chr4_1:25897456-25897475 Msa0541880:intron 25.0%
!!! TGGTGTTTTTTATACTATCA+TGG + chr4_1:25897476-25897495 Msa0541880:intron 25.0%
! CATGGCAATTTACAAATATT+TGG + chr4_1:25897494-25897513 Msa0541880:intron 25.0%
! TGCAATTCACAAATCATATT+AGG - chr4_1:25897522-25897541 None:intergenic 25.0%
! TATTTCCTCATAAAATCATC+TGG - chr4_1:25897552-25897571 None:intergenic 25.0%
!! GATGATTTTATGAGGAAATA+TGG + chr4_1:25897552-25897571 Msa0541880:CDS 25.0%
!! AAAAGGTAGACAACAAATTT+TGG + chr4_1:25897640-25897659 Msa0541880:CDS 25.0%
! CAAAAATATTCCATTAGTAC+TGG + chr4_1:25897690-25897709 Msa0541880:CDS 25.0%
! TTGTTGGTATTCAAATATGA+AGG + chr4_1:25897717-25897736 Msa0541880:CDS 25.0%
!! TCTTACTATTTTCGAAGAAA+TGG + chr4_1:25897842-25897861 Msa0541880:CDS 25.0%
! CTAAACTTAATAGCATAAAC+TGG + chr4_1:25898015-25898034 Msa0541880:CDS 25.0%
! AAACTTAATAGCATAAACTG+GGG + chr4_1:25898017-25898036 Msa0541880:CDS 25.0%
! TAAACTCAACTACATTAAAC+TGG - chr4_1:25898112-25898131 None:intergenic 25.0%
! GAATGAAAAAAAAGTTGTGT+TGG - chr4_1:25898522-25898541 None:intergenic 25.0%
!! AAATTAACTTTGTTTCCGAT+AGG + chr4_1:25898933-25898952 Msa0541880:exon 25.0%
!!! GTGGTTTGGTTTTTTAAAAC+CGG + chr4_1:25895978-25895997 Msa0541880:five_prime_UTR 30.0%
AAAGAATATTGAGAGAGTGA+TGG + chr4_1:25896174-25896193 Msa0541880:five_prime_UTR 30.0%
ATTGAAAGATGAAAGCTTTG+AGG - chr4_1:25896231-25896250 None:intergenic 30.0%
AGCTTTCATCTTTCAATCAA+AGG + chr4_1:25896234-25896253 Msa0541880:five_prime_UTR 30.0%
GCTTTCATCTTTCAATCAAA+GGG + chr4_1:25896235-25896254 Msa0541880:five_prime_UTR 30.0%
GTCATTCATCAAATGCTTTA+AGG + chr4_1:25896257-25896276 Msa0541880:five_prime_UTR 30.0%
!!! ATGCTTTAAGGCTTTGATTT+TGG + chr4_1:25896269-25896288 Msa0541880:five_prime_UTR 30.0%
AGAACAAGCTTATGAAATGA+AGG - chr4_1:25896328-25896347 None:intergenic 30.0%
AATATATGTGTGTTGCATGT+TGG - chr4_1:25896725-25896744 None:intergenic 30.0%
! TTTTACTGGTGGAATTTTTG+AGG + chr4_1:25896843-25896862 Msa0541880:intron 30.0%
!!! TTTCGTGGGTTTGTTTTTAT+CGG - chr4_1:25897141-25897160 None:intergenic 30.0%
AGCATATGTTAGTAAATTGC+TGG - chr4_1:25897200-25897219 None:intergenic 30.0%
! ATATGATTTGTGAATTGCAG+AGG + chr4_1:25897523-25897542 Msa0541880:intron 30.0%
! GATTTTATGAGGAAATATGG+TGG + chr4_1:25897555-25897574 Msa0541880:CDS 30.0%
!!! AACAAATTTTGGTTCCTTGA+TGG + chr4_1:25897651-25897670 Msa0541880:CDS 30.0%
TGATAGTTAATCTCAGATGT+AGG - chr4_1:25897777-25897796 None:intergenic 30.0%
TGAAGATTCTGTTGAAATCA+TGG + chr4_1:25897869-25897888 Msa0541880:CDS 30.0%
!!! TAACTGCTTTGTTTTGCAAT+AGG - chr4_1:25897923-25897942 None:intergenic 30.0%
! AAATGATTTTGCTGCATTGA+TGG - chr4_1:25898419-25898438 None:intergenic 30.0%
ATCAAACTTCAAATCTCTGA+TGG + chr4_1:25898640-25898659 Msa0541880:CDS 30.0%
TCAAACTTCAAATCTCTGAT+GGG + chr4_1:25898641-25898660 Msa0541880:CDS 30.0%
TACTGTATTTCGTATTACAG+AGG + chr4_1:25898810-25898829 Msa0541880:CDS 30.0%
AAGTCATCATCTTGAAATGT+TGG - chr4_1:25899058-25899077 None:intergenic 30.0%
TACAAACCAAGTTAAAACAG+CGG - chr4_1:25899107-25899126 None:intergenic 30.0%
! TCTAGCTTATATCAGAAACT+TGG + chr4_1:25899141-25899160 Msa0541880:three_prime_UTR 30.0%
TGTTCCAAACAAACTCCAAA+CGG + chr4_1:25895942-25895961 Msa0541880:five_prime_UTR 35.0%
!!! ACACTTTTGTTGTTTCCGTT+TGG - chr4_1:25895960-25895979 None:intergenic 35.0%
AAACGGAAACAACAAAAGTG+TGG + chr4_1:25895959-25895978 Msa0541880:five_prime_UTR 35.0%
! GAAACAACAAAAGTGTGGTT+TGG + chr4_1:25895964-25895983 Msa0541880:five_prime_UTR 35.0%
CAAAGCAACTTTCTCATTTC+CGG - chr4_1:25896000-25896019 None:intergenic 35.0%
!! TTGCTTTGGAAAATCCAAAC+TGG + chr4_1:25896012-25896031 Msa0541880:five_prime_UTR 35.0%
!! TGCTTTGGAAAATCCAAACT+GGG + chr4_1:25896013-25896032 Msa0541880:five_prime_UTR 35.0%
AGCTTATGAAATGAAGGAGA+AGG - chr4_1:25896322-25896341 None:intergenic 35.0%
!! ATTTTTAGATTAGATGGGCG+TGG + chr4_1:25896596-25896615 Msa0541880:intron 35.0%
!!! AGAGTTTTTTGGATGACTGA+TGG + chr4_1:25896816-25896835 Msa0541880:intron 35.0%
!!! GAGTTTTTTGGATGACTGAT+GGG + chr4_1:25896817-25896836 Msa0541880:intron 35.0%
GAAAGGGAAACAATACAACA+AGG + chr4_1:25897088-25897107 Msa0541880:intron 35.0%
!!! TTCGTGGGTTTGTTTTTATC+GGG - chr4_1:25897140-25897159 None:intergenic 35.0%
! AATTGTTTCTCCCTGTAACT+CGG - chr4_1:25897242-25897261 None:intergenic 35.0%
!! AAGTTCCGTGATTCTGAAAT+TGG + chr4_1:25897386-25897405 Msa0541880:intron 35.0%
TTGTACTAAGTTCGTCGAAT+CGG - chr4_1:25897429-25897448 None:intergenic 35.0%
CAACAAGTATCCAGTACTAA+TGG - chr4_1:25897703-25897722 None:intergenic 35.0%
! CATTAGTACTGGATACTTGT+TGG + chr4_1:25897701-25897720 Msa0541880:CDS 35.0%
TTGCAAAACAAAGCAGTTAC+CGG + chr4_1:25897924-25897943 Msa0541880:CDS 35.0%
AGAAAACTGCTGTAAAGAAG+AGG + chr4_1:25898183-25898202 Msa0541880:CDS 35.0%
AACCATCTAATCCTTTCTGT+CGG + chr4_1:25898440-25898459 Msa0541880:CDS 35.0%
TATATAAATAGGAGGGTCGT+AGG - chr4_1:25898471-25898490 None:intergenic 35.0%
TACGACCCTCCTATTTATAT+AGG + chr4_1:25898470-25898489 Msa0541880:intron 35.0%
ACGACCCTCCTATTTATATA+GGG + chr4_1:25898471-25898490 Msa0541880:intron 35.0%
TATGCACCCCCTATATAAAT+AGG - chr4_1:25898482-25898501 None:intergenic 35.0%
! TTTATATAGGGGGTGCATAA+TGG + chr4_1:25898483-25898502 Msa0541880:intron 35.0%
TTTGCAGAGAAGAACTTGAA+TGG + chr4_1:25898604-25898623 Msa0541880:CDS 35.0%
! TTTTCGCTGGAGAACAATTT+AGG + chr4_1:25898730-25898749 Msa0541880:CDS 35.0%
TTTCGCTGGAGAACAATTTA+GGG + chr4_1:25898731-25898750 Msa0541880:CDS 35.0%
TTTCGTATTACAGAGGATGA+AGG + chr4_1:25898817-25898836 Msa0541880:CDS 35.0%
TAATCAGTTTAGTTGAAGCG+AGG - chr4_1:25898912-25898931 None:intergenic 35.0%
GCTAATCACACACAAGAAAA+GGG - chr4_1:25898989-25899008 None:intergenic 35.0%
AGCTAATCACACACAAGAAA+AGG - chr4_1:25898990-25899009 None:intergenic 35.0%
! GTTTCCGTTTGGAGTTTGTT+TGG - chr4_1:25895949-25895968 None:intergenic 40.0%
CGGAAATGAGAAAGTTGCTT+TGG + chr4_1:25895998-25896017 Msa0541880:five_prime_UTR 40.0%
! AAACAGAGGTTTTCCCAGTT+TGG - chr4_1:25896029-25896048 None:intergenic 40.0%
TGAGTCACCAACTCGTTATT+AGG + chr4_1:25896066-25896085 Msa0541880:five_prime_UTR 40.0%
AACTTGGCCTAATAACGAGT+TGG - chr4_1:25896076-25896095 None:intergenic 40.0%
AACTCGTTATTAGGCCAAGT+TGG + chr4_1:25896075-25896094 Msa0541880:five_prime_UTR 40.0%
ACTTGATGAAAGGGATGACA+AGG - chr4_1:25896572-25896591 None:intergenic 40.0%
! CAAGGTCTCAAGATTAGTCA+TGG + chr4_1:25896648-25896667 Msa0541880:intron 40.0%
GTCAAATCATAAAGTGGGGT+TGG + chr4_1:25896680-25896699 Msa0541880:intron 40.0%
GTGTGTTGCATGTTGGAAAT+AGG - chr4_1:25896718-25896737 None:intergenic 40.0%
!!! TGACTGATGGGTTGTTTTAC+TGG + chr4_1:25896829-25896848 Msa0541880:intron 40.0%
TGTGCTAGGTTGTAACATGA+AGG + chr4_1:25896932-25896951 Msa0541880:intron 40.0%
GTTGTAACATGAAGGTAGCT+CGG + chr4_1:25896940-25896959 Msa0541880:intron 40.0%
AAAAAACTCGTGGCAAGGAA+AGG + chr4_1:25897071-25897090 Msa0541880:intron 40.0%
AAAAACTCGTGGCAAGGAAA+GGG + chr4_1:25897072-25897091 Msa0541880:intron 40.0%
! GGAGGTGTAACTTATATAGG+CGG - chr4_1:25897116-25897135 None:intergenic 40.0%
AACCCACGAAAACCCAAATA+AGG + chr4_1:25897150-25897169 Msa0541880:intron 40.0%
!!! TGCCTTATTTGGGTTTTCGT+GGG - chr4_1:25897155-25897174 None:intergenic 40.0%
!!! ATGCCTTATTTGGGTTTTCG+TGG - chr4_1:25897156-25897175 None:intergenic 40.0%
!! AAACCCAAATAAGGCATCGA+TGG + chr4_1:25897159-25897178 Msa0541880:intron 40.0%
!! AACCCAAATAAGGCATCGAT+GGG + chr4_1:25897160-25897179 Msa0541880:intron 40.0%
!! TACCCATCGATGCCTTATTT+GGG - chr4_1:25897165-25897184 None:intergenic 40.0%
! TTACCCATCGATGCCTTATT+TGG - chr4_1:25897166-25897185 None:intergenic 40.0%
AAATGCATTAGCCGAGTTAC+AGG + chr4_1:25897228-25897247 Msa0541880:intron 40.0%
AATGCATTAGCCGAGTTACA+GGG + chr4_1:25897229-25897248 Msa0541880:intron 40.0%
GAGAAACAATTCCCATGCAT+TGG + chr4_1:25897251-25897270 Msa0541880:intron 40.0%
AAACAATTCCCATGCATTGG+AGG + chr4_1:25897254-25897273 Msa0541880:intron 40.0%
GCTTGAGTGTTTGTGTGTTA+CGG + chr4_1:25897352-25897371 Msa0541880:intron 40.0%
! GGCTTCCAGATGATTTTATG+AGG + chr4_1:25897544-25897563 Msa0541880:CDS 40.0%
! TGGTGGTGATATTTCTCCAA+TGG + chr4_1:25897572-25897591 Msa0541880:CDS 40.0%
! GGAACTTTGAGAGTAACCAT+TGG - chr4_1:25897591-25897610 None:intergenic 40.0%
GTTACTCTCAAAGTTCCTGA+TGG + chr4_1:25897594-25897613 Msa0541880:CDS 40.0%
!!! AATTTTGGTTCCTTGATGGC+TGG + chr4_1:25897655-25897674 Msa0541880:CDS 40.0%
CAAATTCATTCCAGCCATCA+AGG - chr4_1:25897668-25897687 None:intergenic 40.0%
! AGTAATGAAGCGTCTCTCTT+TGG + chr4_1:25897813-25897832 Msa0541880:CDS 40.0%
TTTGCAATAGGCTAGGAGTA+AGG - chr4_1:25897911-25897930 None:intergenic 40.0%
!!! GCTTTGTTTTGCAATAGGCT+AGG - chr4_1:25897918-25897937 None:intergenic 40.0%
AGTAAGTTTATCAGCTGAGC+CGG - chr4_1:25897946-25897965 None:intergenic 40.0%
TTAAACAGATTCTGCAGTGC+TGG - chr4_1:25897990-25898009 None:intergenic 40.0%
GCACTGCAGAATCTGTTTAA+TGG + chr4_1:25897990-25898009 Msa0541880:CDS 40.0%
AATAGCATAAACTGGGGTGA+AGG + chr4_1:25898023-25898042 Msa0541880:CDS 40.0%
AACCAGTTGACCAGAGATAT+AGG + chr4_1:25898083-25898102 Msa0541880:CDS 40.0%
AAACTGGAGACCTATATCTC+TGG - chr4_1:25898096-25898115 None:intergenic 40.0%
GCTGTAAAGAAGAGGAAATC+AGG + chr4_1:25898191-25898210 Msa0541880:CDS 40.0%
!! TTTTGAAAGTGCAGATGTCC+AGG + chr4_1:25898291-25898310 Msa0541880:intron 40.0%
TCATCTTCATGTTCAGAAGG+AGG - chr4_1:25898319-25898338 None:intergenic 40.0%
TCCTTCTGAACATGAAGATG+AGG + chr4_1:25898318-25898337 Msa0541880:CDS 40.0%
ACCTCATCTTCATGTTCAGA+AGG - chr4_1:25898322-25898341 None:intergenic 40.0%
ATGAGGTAGAAATGCGCAAT+AGG + chr4_1:25898335-25898354 Msa0541880:CDS 40.0%
! TTTATGAAAGTGCATCCGCA+AGG + chr4_1:25898359-25898378 Msa0541880:CDS 40.0%
! TGTTGCAGTTCTTTTCCTTG+CGG - chr4_1:25898377-25898396 None:intergenic 40.0%
AACAGCTGAAGAAAGAGAGA+AGG + chr4_1:25898393-25898412 Msa0541880:CDS 40.0%
ACCATCTAATCCTTTCTGTC+GGG + chr4_1:25898441-25898460 Msa0541880:CDS 40.0%
CGACCCTCCTATTTATATAG+GGG + chr4_1:25898472-25898491 Msa0541880:intron 40.0%
GACCCTCCTATTTATATAGG+GGG + chr4_1:25898473-25898492 Msa0541880:intron 40.0%
CACCCCCTATATAAATAGGA+GGG - chr4_1:25898478-25898497 None:intergenic 40.0%
CAAAGCAAGATGGTAGATAC+TGG - chr4_1:25898588-25898607 None:intergenic 40.0%
TTCTTCTCTGCAAAGCAAGA+TGG - chr4_1:25898598-25898617 None:intergenic 40.0%
AAGAACTTGAATGGCGTTTC+AGG + chr4_1:25898613-25898632 Msa0541880:CDS 40.0%
! TAGCTCTACCACCTCTATAA+AGG - chr4_1:25898687-25898706 None:intergenic 40.0%
TTCGCTGGAGAACAATTTAG+GGG + chr4_1:25898732-25898751 Msa0541880:CDS 40.0%
CGTTTACCAGTTTCACATGT+TGG - chr4_1:25898873-25898892 None:intergenic 40.0%
AAAGTTGAGCTACGACCTAT+CGG - chr4_1:25898951-25898970 None:intergenic 40.0%
ACACACAAGAAAAGGGATAC+TGG - chr4_1:25898982-25899001 None:intergenic 40.0%
GGTGAGTAGCACAAAAACAG+AGG - chr4_1:25896043-25896062 None:intergenic 45.0%
!! TAACGAGTTGGTGACTCAGT+GGG - chr4_1:25896064-25896083 None:intergenic 45.0%
!! ATAACGAGTTGGTGACTCAG+TGG - chr4_1:25896065-25896084 None:intergenic 45.0%
! TGCTTAGCTTGAAGAGTGGA+GGG - chr4_1:25896352-25896371 None:intergenic 45.0%
! TTGCTTAGCTTGAAGAGTGG+AGG - chr4_1:25896353-25896372 None:intergenic 45.0%
! CAGTTGCTTAGCTTGAAGAG+TGG - chr4_1:25896356-25896375 None:intergenic 45.0%
CACTCTTCAAGCTAAGCAAC+TGG + chr4_1:25896354-25896373 Msa0541880:CDS 45.0%
! GGTTTGAGGTTGTGGATGAT+TGG - chr4_1:25896551-25896570 None:intergenic 45.0%
! GATGACAAGGTTTGAGGTTG+TGG - chr4_1:25896559-25896578 None:intergenic 45.0%
GAAAGGGATGACAAGGTTTG+AGG - chr4_1:25896565-25896584 None:intergenic 45.0%
!!! CTGATGGGTTGTTTTACTGG+TGG + chr4_1:25896832-25896851 Msa0541880:intron 45.0%
CTCTGTATGAAGCATGTGCT+AGG + chr4_1:25896918-25896937 Msa0541880:intron 45.0%
TAACATGAAGGTAGCTCGGT+TGG + chr4_1:25896944-25896963 Msa0541880:intron 45.0%
!! TAGCTCGGTTGGTGAGTTAA+GGG + chr4_1:25896955-25896974 Msa0541880:intron 45.0%
CAAGACGCACAAAAAACTCG+TGG + chr4_1:25897061-25897080 Msa0541880:intron 45.0%
! GGCGGAGGTGTAACTTATAT+AGG - chr4_1:25897119-25897138 None:intergenic 45.0%
!!! GTGGGTTTGTTTTTATCGGG+CGG - chr4_1:25897137-25897156 None:intergenic 45.0%
GGCAGCCAATTTCAGAATCA+CGG - chr4_1:25897394-25897413 None:intergenic 45.0%
!! TCGAATCGGTTTGGCAAGAT+TGG - chr4_1:25897415-25897434 None:intergenic 45.0%
CTAAGTTCGTCGAATCGGTT+TGG - chr4_1:25897424-25897443 None:intergenic 45.0%
GTGGCGTGTAGGAATGAAAA+AGG + chr4_1:25897623-25897642 Msa0541880:CDS 45.0%
GCTTCATTACTTCTTTGCGC+AGG - chr4_1:25897804-25897823 None:intergenic 45.0%
TCCTTCCAGAAATGCCAACT+CGG + chr4_1:25898055-25898074 Msa0541880:CDS 45.0%
GACCTATATCTCTGGTCAAC+TGG - chr4_1:25898088-25898107 None:intergenic 45.0%
ACCCGACAGAAAGGATTAGA+TGG - chr4_1:25898445-25898464 None:intergenic 45.0%
GCACCCCCTATATAAATAGG+AGG - chr4_1:25898479-25898498 None:intergenic 45.0%
AAATCTCTGATGGGAGACAG+TGG + chr4_1:25898650-25898669 Msa0541880:CDS 45.0%
TGGTAGAGCTAAGTTAAGCC+AGG + chr4_1:25898696-25898715 Msa0541880:CDS 45.0%
GGTAGAGCTAAGTTAAGCCA+GGG + chr4_1:25898697-25898716 Msa0541880:CDS 45.0%
GTAGAGCTAAGTTAAGCCAG+GGG + chr4_1:25898698-25898717 Msa0541880:CDS 45.0%
CTGGAGAACAATTTAGGGGA+AGG + chr4_1:25898736-25898755 Msa0541880:CDS 45.0%
!! ACATGTTGGTTCTGCTGCAA+CGG - chr4_1:25898859-25898878 None:intergenic 45.0%
GCAGAACCAACATGTGAAAC+TGG + chr4_1:25898864-25898883 Msa0541880:CDS 45.0%
!!! AGCTTGCCGCTGTTTTAACT+TGG + chr4_1:25899098-25899117 Msa0541880:three_prime_UTR 45.0%
!! GTAGCTCGGTTGGTGAGTTA+AGG + chr4_1:25896954-25896973 Msa0541880:intron 50.0%
CGCACAAAAAACTCGTGGCA+AGG + chr4_1:25897066-25897085 Msa0541880:intron 50.0%
!!! GGTTTGTTTTTATCGGGCGG+AGG - chr4_1:25897134-25897153 None:intergenic 50.0%
CAATTCCCATGCATTGGAGG+AGG + chr4_1:25897257-25897276 Msa0541880:intron 50.0%
AGGTTCCTCCTCCAATGCAT+GGG - chr4_1:25897265-25897284 None:intergenic 50.0%
AGGCTAGGAGTAAGGTTCGT+AGG - chr4_1:25897903-25897922 None:intergenic 50.0%
! AACAGATTCTGCAGTGCTGG+AGG - chr4_1:25897987-25898006 None:intergenic 50.0%
AGCATAAACTGGGGTGAAGG+TGG + chr4_1:25898026-25898045 Msa0541880:CDS 50.0%
GCATAAACTGGGGTGAAGGT+GGG + chr4_1:25898027-25898046 Msa0541880:CDS 50.0%
! ACCGAGTTGGCATTTCTGGA+AGG - chr4_1:25898059-25898078 None:intergenic 50.0%
! GTCTACCGAGTTGGCATTTC+TGG - chr4_1:25898063-25898082 None:intergenic 50.0%
CAACTGGTTGTCTACCGAGT+TGG - chr4_1:25898072-25898091 None:intergenic 50.0%
TGAAGAGTTGAAGTTGCGCG+CGG + chr4_1:25898142-25898161 Msa0541880:CDS 50.0%
CATGTTCAGAAGGAGGTTCC+TGG - chr4_1:25898312-25898331 None:intergenic 50.0%
CCTCTATAAAGGCAGCGAAC+TGG - chr4_1:25898676-25898695 None:intergenic 50.0%
CCAGTTCGCTGCCTTTATAG+AGG + chr4_1:25898673-25898692 Msa0541880:CDS 50.0%
GTTCGCTGCCTTTATAGAGG+TGG + chr4_1:25898676-25898695 Msa0541880:CDS 50.0%
CGATGTGTGTGTGTTTGAGC+TGG + chr4_1:25898759-25898778 Msa0541880:CDS 50.0%
GTTTGAGCTGGTTGCAACGA+AGG + chr4_1:25898771-25898790 Msa0541880:CDS 50.0%
AACGAAGGAAGTAGTGCTGC+AGG + chr4_1:25898786-25898805 Msa0541880:CDS 50.0%
GAAGCGAGGTGATGCTGAAA+CGG - chr4_1:25898898-25898917 None:intergenic 50.0%
CAGGTTCCTCCTCCAATGCA+TGG - chr4_1:25897266-25897285 None:intergenic 55.0%
AAGTTCCTGATGGCAGTGCG+TGG + chr4_1:25897604-25897623 Msa0541880:CDS 55.0%
! AGATTCTGCAGTGCTGGAGG+CGG - chr4_1:25897984-25898003 None:intergenic 55.0%
CGTAGGACAACCCGACAGAA+AGG - chr4_1:25898454-25898473 None:intergenic 55.0%
GAGCTAAGTTAAGCCAGGGG+TGG + chr4_1:25898701-25898720 Msa0541880:CDS 55.0%
GCGAAAACTCATACCACCCC+TGG - chr4_1:25898717-25898736 None:intergenic 55.0%
! GGGGTGGTATGAGTTTTCGC+TGG + chr4_1:25898717-25898736 Msa0541880:CDS 55.0%
GCGCGCGGCTACTGATGAAA+AGG + chr4_1:25898157-25898176 Msa0541880:CDS 60.0%
TGCAACGGCTGTGGGCTCAA+CGG - chr4_1:25898844-25898863 None:intergenic 60.0%
GGTTCTGCTGCAACGGCTGT+GGG - chr4_1:25898852-25898871 None:intergenic 60.0%
! TGGTTCTGCTGCAACGGCTG+TGG - chr4_1:25898853-25898872 None:intergenic 60.0%
ACACGCCACGCACTGCCATC+AGG - chr4_1:25897612-25897631 None:intergenic 65.0%
GATGGCAGTGCGTGGCGTGT+AGG + chr4_1:25897612-25897631 Msa0541880:CDS 65.0%
GGAGGCGGACGAGACTTGCA+AGG - chr4_1:25897969-25897988 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 25895936 25899176 25895936 ID=Msa0541880;Name=Msa0541880
chr4_1 mRNA 25895936 25899176 25895936 ID=Msa0541880-mRNA-1;Parent=Msa0541880;Name=Msa0541880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=380|0.66|0.75|1|1|1|4|237|412
chr4_1 exon 25895936 25896375 25895936 ID=Msa0541880-mRNA-1:exon:7042;Parent=Msa0541880-mRNA-1
chr4_1 exon 25897543 25898212 25897543 ID=Msa0541880-mRNA-1:exon:7043;Parent=Msa0541880-mRNA-1
chr4_1 exon 25898305 25898462 25898305 ID=Msa0541880-mRNA-1:exon:7044;Parent=Msa0541880-mRNA-1
chr4_1 exon 25898589 25899176 25898589 ID=Msa0541880-mRNA-1:exon:7045;Parent=Msa0541880-mRNA-1
chr4_1 five_prime_UTR 25895936 25896315 25895936 ID=Msa0541880-mRNA-1:five_prime_utr;Parent=Msa0541880-mRNA-1
chr4_1 CDS 25896316 25896375 25896316 ID=Msa0541880-mRNA-1:cds;Parent=Msa0541880-mRNA-1
chr4_1 CDS 25897543 25898212 25897543 ID=Msa0541880-mRNA-1:cds;Parent=Msa0541880-mRNA-1
chr4_1 CDS 25898305 25898462 25898305 ID=Msa0541880-mRNA-1:cds;Parent=Msa0541880-mRNA-1
chr4_1 CDS 25898589 25898939 25898589 ID=Msa0541880-mRNA-1:cds;Parent=Msa0541880-mRNA-1
chr4_1 three_prime_UTR 25898940 25899176 25898940 ID=Msa0541880-mRNA-1:three_prime_utr;Parent=Msa0541880-mRNA-1
Gene Sequence

>Msa0541880

ATGCCTTCTCCTTCATTTCATAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGCAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGTGGTGATATTTCTCCAATGGTTACTCTCAAAGTTCCTGATGGCAGTGCGTGGCGTGTAGGAATGAAAAAGGTAGACAACAAATTTTGGTTCCTTGATGGCTGGAATGAATTTGTTCAAAAATATTCCATTAGTACTGGATACTTGTTGGTATTCAAATATGAAGGAAAGTCGTATTTCACTGTTAATATTTTTAGTTTGCCTACATCTGAGATTAACTATCAATCACCTGCGCAAAGAAGTAATGAAGCGTCTCTCTTTGGAAAACGTCTTACTATTTTCGAAGAAATGGAAGATGAAGATTCTGTTGAAATCATGGACTCGTCGCCTACGAACCTTACTCCTAGCCTATTGCAAAACAAAGCAGTTACCGGCTCAGCTGATAAACTTACTCCTTGCAAGTCTCGTCCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGTGAAGGTGGGAATACTCCTTCCAGAAATGCCAACTCGGTAGACAACCAGTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTAATGAAGAGTTGAAGTTGCGCGCGGCTACTGATGAAAAGGTTAAGAAAACTGCTGTAAAGAAGAGGAAATCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCATCCGCAAGGAAAAGAACTGCAACAGCTGAAGAAAGAGAGAAGGCCATCAATGCAGCAAAATCATTTGAACCATCTAATCCTTTCTGTCGGTATCTACCATCTTGCTTTGCAGAGAAGAACTTGAATGGCGTTTCAGGAATTATCAAACTTCAAATCTCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAGGTGGTAGAGCTAAGTTAAGCCAGGGGTGGTATGAGTTTTCGCTGGAGAACAATTTAGGGGAAGGCGATGTGTGTGTGTTTGAGCTGGTTGCAACGAAGGAAGTAGTGCTGCAGGTTACTGTATTTCGTATTACAGAGGATGAAGGACCGTTGAGCCCACAGCCGTTGCAGCAGAACCAACATGTGAAACTGGTAAACGTTCCGTTTCAGCATCACCTCGCTTCAACTAAACTGATTAGAAATTAA

Protein sequence

>Msa0541880

MPSPSFHKLVLPSTLQAKQLRLPDDFMRKYGGDISPMVTLKVPDGSAWRVGMKKVDNKFWFLDGWNEFVQKYSISTGYLLVFKYEGKSYFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMDSSPTNLTPSLLQNKAVTGSADKLTPCKSRPPPALQNLFNGSKLNSINWGEGGNTPSRNANSVDNQLTRDIGLQFNVVEFKKSNEELKLRAATDEKVKKTAVKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKSFEPSNPFCRYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWYEFSLENNLGEGDVCVFELVATKEVVLQVTVFRITEDEGPLSPQPLQQNQHVKLVNVPFQHHLASTKLIRN*