Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815890 | KAF4399784.1 | 83.568 | 213 | 31 | 1 | 1 | 213 | 1 | 209 | 1.02e-122 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815890 | sp|Q8W4C8|ARL8C_ARATH | 80.751 | 213 | 11 | 1 | 1 | 213 | 1 | 183 | 1.60e-122 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815890 | G7K1N4 | 85.981 | 214 | 0 | 1 | 1 | 214 | 1 | 184 | 2.63e-125 | 361 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0815890 | Msa0856190 | 0.820270 | 7.496589e-53 | -8.615850e-47 |
| Msa0227910 | Msa0815890 | 0.820824 | 5.592891e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815890 | MtrunA17_Chr5g0434561 | 85.981 | 214 | 0 | 1 | 1 | 214 | 1 | 184 | 5.06e-129 | 361 |
| Msa0815890 | MtrunA17_Chr5g0401071 | 71.226 | 212 | 31 | 1 | 1 | 212 | 1 | 182 | 3.75e-107 | 305 |
| Msa0815890 | MtrunA17_Chr4g0012371 | 65.128 | 195 | 38 | 1 | 20 | 214 | 1 | 165 | 5.19e-88 | 256 |
| Msa0815890 | MtrunA17_Chr7g0270301 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.07e-24 | 95.9 |
| Msa0815890 | MtrunA17_Chr1g0194261 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.14e-24 | 95.9 |
| Msa0815890 | MtrunA17_Chr6g0450081 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.60e-24 | 94.7 |
| Msa0815890 | MtrunA17_Chr5g0413451 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.66e-24 | 94.7 |
| Msa0815890 | MtrunA17_Chr5g0413441 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.66e-24 | 94.7 |
| Msa0815890 | MtrunA17_Chr5g0401761 | 29.082 | 196 | 108 | 2 | 11 | 206 | 9 | 173 | 3.83e-24 | 94.4 |
| Msa0815890 | MtrunA17_Chr4g0072861 | 29.592 | 196 | 107 | 2 | 11 | 206 | 9 | 173 | 1.14e-23 | 93.2 |
| Msa0815890 | MtrunA17_Chr1g0188111 | 31.395 | 172 | 87 | 2 | 14 | 185 | 12 | 152 | 3.92e-22 | 89.0 |
| Msa0815890 | MtrunA17_Chr2g0287721 | 27.700 | 213 | 111 | 3 | 2 | 208 | 7 | 182 | 5.56e-22 | 89.4 |
| Msa0815890 | MtrunA17_Chr4g0039591 | 28.902 | 173 | 92 | 2 | 13 | 185 | 11 | 152 | 5.71e-21 | 86.3 |
| Msa0815890 | MtrunA17_Chr5g0395631 | 26.590 | 173 | 96 | 2 | 13 | 185 | 11 | 152 | 4.30e-19 | 81.3 |
| Msa0815890 | MtrunA17_Chr5g0395641 | 29.143 | 175 | 91 | 3 | 13 | 185 | 11 | 154 | 8.41e-19 | 80.5 |
| Msa0815890 | MtrunA17_Chr8g0373271 | 27.749 | 191 | 104 | 4 | 20 | 208 | 17 | 175 | 3.57e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815890 | AT5G37680.1 | 80.751 | 213 | 11 | 1 | 1 | 213 | 1 | 183 | 1.63e-123 | 347 |
| Msa0815890 | AT5G67560.1 | 69.626 | 214 | 35 | 1 | 1 | 214 | 1 | 184 | 6.95e-106 | 303 |
| Msa0815890 | AT3G49870.1 | 68.692 | 214 | 37 | 1 | 1 | 214 | 1 | 184 | 5.69e-104 | 298 |
| Msa0815890 | AT3G49870.2 | 67.692 | 195 | 33 | 1 | 20 | 214 | 1 | 165 | 2.27e-91 | 265 |
| Msa0815890 | AT5G37680.2 | 75.449 | 167 | 11 | 1 | 48 | 214 | 1 | 137 | 2.46e-87 | 254 |
| Msa0815890 | AT3G49860.1 | 59.898 | 197 | 49 | 1 | 18 | 214 | 10 | 176 | 8.37e-79 | 234 |
| Msa0815890 | AT1G10630.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.57e-24 | 95.9 |
| Msa0815890 | AT1G10630.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.57e-24 | 95.9 |
| Msa0815890 | AT1G23490.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT1G70490.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT1G70490.7 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT1G70490.4 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT1G70490.3 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT1G70490.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT1G70490.6 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT1G70490.5 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0815890 | AT3G62290.3 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0815890 | AT3G62290.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0815890 | AT3G62290.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0815890 | AT2G47170.2 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0815890 | AT2G47170.1 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0815890 | AT2G47170.3 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0815890 | AT5G14670.2 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.87e-24 | 94.7 |
| Msa0815890 | AT5G14670.3 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.87e-24 | 94.7 |
| Msa0815890 | AT5G14670.1 | 31.395 | 172 | 87 | 2 | 14 | 185 | 12 | 152 | 5.60e-24 | 94.4 |
| Msa0815890 | AT2G24765.1 | 27.551 | 196 | 111 | 2 | 11 | 206 | 9 | 173 | 1.03e-21 | 88.6 |
| Msa0815890 | AT3G22950.1 | 30.814 | 172 | 88 | 2 | 14 | 185 | 12 | 152 | 1.32e-21 | 88.2 |
| Msa0815890 | AT3G22950.2 | 30.814 | 172 | 88 | 2 | 14 | 185 | 12 | 152 | 1.32e-21 | 88.2 |
| Msa0815890 | AT5G52210.1 | 28.302 | 212 | 109 | 3 | 2 | 207 | 7 | 181 | 1.38e-21 | 88.6 |
| Msa0815890 | AT5G52210.2 | 28.302 | 212 | 109 | 3 | 2 | 207 | 7 | 181 | 1.38e-21 | 88.6 |
| Msa0815890 | AT5G17060.2 | 28.324 | 173 | 93 | 2 | 13 | 185 | 11 | 152 | 5.98e-21 | 86.7 |
| Msa0815890 | AT5G17060.1 | 28.324 | 173 | 93 | 2 | 13 | 185 | 11 | 152 | 5.98e-21 | 86.7 |
| Msa0815890 | AT3G03120.1 | 27.746 | 173 | 94 | 2 | 13 | 185 | 11 | 152 | 3.57e-20 | 84.7 |
| Msa0815890 | AT2G15310.1 | 25.824 | 182 | 101 | 3 | 17 | 198 | 15 | 162 | 1.30e-18 | 80.9 |
| Msa0815890 | AT2G24765.2 | 28.000 | 150 | 77 | 2 | 11 | 160 | 9 | 127 | 1.04e-16 | 73.9 |
| Msa0815890 | AT3G03120.2 | 27.333 | 150 | 78 | 2 | 13 | 162 | 11 | 129 | 1.20e-16 | 73.9 |
| Msa0815890 | AT2G18390.1 | 27.749 | 191 | 104 | 4 | 20 | 208 | 17 | 175 | 2.18e-15 | 71.6 |
Find 65 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAATTCACTTCGAGTTAT+TGG | 0.140016 | 5_3:+49598585 | None:intergenic |
| AACAAATTGCTTCGTTGATT+TGG | 0.213779 | 5_3:-49597894 | Msa0815890:three_prime_UTR |
| GAAAATCACAAGGCGGTTAT+TGG | 0.233317 | 5_3:-49600519 | Msa0815890:CDS |
| CTTGATATTGTACCAAGTTT+TGG | 0.243962 | 5_3:-49598071 | Msa0815890:three_prime_UTR |
| GGGATTCCTTTGCTTGTTCT+TGG | 0.246105 | 5_3:-49598534 | Msa0815890:CDS |
| ACAATAAAGCTTTGGGATCT+TGG | 0.278062 | 5_3:-49601628 | Msa0815890:CDS |
| AAGCAATTTGTTTAAATTGT+TGG | 0.310341 | 5_3:+49597905 | None:intergenic |
| ATGGAAGATTTGACCAAGTT+TGG | 0.317834 | 5_3:+49598120 | None:intergenic |
| TCTGGGATTCTCTTCTCAAT+TGG | 0.329088 | 5_3:-49602343 | Msa0815890:CDS |
| ATTCTCAACGAATGGGTCTC+TGG | 0.331521 | 5_3:-49602361 | Msa0815890:exon |
| TTGACCCACAACTAAAATTA+AGG | 0.339003 | 5_3:+49598164 | None:intergenic |
| GAGATTCATCCTTTGTTGAT+AGG | 0.386303 | 5_3:-49600561 | Msa0815890:CDS |
| GAAATGTCACAATAAAGCTT+TGG | 0.389200 | 5_3:-49601636 | Msa0815890:CDS |
| AAAATCACAAGGCGGTTATT+GGG | 0.390592 | 5_3:-49600518 | Msa0815890:CDS |
| ACATTCCACAAACCATTCAT+TGG | 0.393712 | 5_3:-49602418 | Msa0815890:five_prime_UTR |
| CTGACCAAACCTTCCTTGAA+TGG | 0.415538 | 5_3:-49598555 | Msa0815890:CDS |
| TTGATCTACCAATGCTTGCT+TGG | 0.418148 | 5_3:+49598482 | None:intergenic |
| AAATGTCACAATAAAGCTTT+GGG | 0.418458 | 5_3:-49601635 | Msa0815890:CDS |
| CTCTTCTCAATTGGCTCCGC+AGG | 0.421148 | 5_3:-49602334 | Msa0815890:intron |
| AATCCCATTCAAGGAAGGTT+TGG | 0.436571 | 5_3:+49598551 | None:intergenic |
| AGCGACCAATGAATGGTTTG+TGG | 0.443931 | 5_3:+49602413 | None:intergenic |
| GAGATGGAGCTGTCTCTTGT+AGG | 0.450824 | 5_3:-49601978 | Msa0815890:CDS |
| TTCATTCATTCTCAACGAAT+GGG | 0.456464 | 5_3:-49602368 | Msa0815890:exon |
| TGACCAAACCTTCCTTGAAT+GGG | 0.458229 | 5_3:-49598554 | Msa0815890:CDS |
| AAGAGGACAAGAATTGGAAA+GGG | 0.461503 | 5_3:-49602580 | None:intergenic |
| GAATGGTTTGTGGAATGTTA+AGG | 0.461935 | 5_3:+49602423 | None:intergenic |
| ATTCATTCATTCTCAACGAA+TGG | 0.473749 | 5_3:-49602369 | Msa0815890:exon |
| AAACTTTAGCGACCAATGAA+TGG | 0.477552 | 5_3:+49602406 | None:intergenic |
| AATTGCTTCGTTGATTTGGA+AGG | 0.481442 | 5_3:-49597890 | None:intergenic |
| AACAGAAACCATCCAAAACT+TGG | 0.482714 | 5_3:+49598059 | None:intergenic |
| TTCTCAACGAATGGGTCTCT+GGG | 0.483857 | 5_3:-49602360 | Msa0815890:exon |
| CATTCAAGGAAGGTTTGGTC+AGG | 0.486407 | 5_3:+49598556 | None:intergenic |
| CTTGTAGGTCTTCAGAATGC+TGG | 0.494726 | 5_3:-49601963 | Msa0815890:CDS |
| TTGCTACATGATTTCATGCA+AGG | 0.505231 | 5_3:-49598289 | Msa0815890:CDS |
| TGAATGAATACGAAGAAAGA+AGG | 0.510911 | 5_3:+49602383 | None:intergenic |
| AAGCAAAGGAATCCCATTCA+AGG | 0.513568 | 5_3:+49598542 | None:intergenic |
| AGCTCTTTCCAAGCAAGCAT+TGG | 0.513878 | 5_3:-49598490 | Msa0815890:CDS |
| ACATAGATGTGGTCATCGAC+TGG | 0.530688 | 5_3:-49598257 | Msa0815890:CDS |
| TTTGGGATCTTGGTGGTCAA+CGG | 0.548867 | 5_3:-49601618 | Msa0815890:CDS |
| TTGTGGAATGTTAAGGAAGG+AGG | 0.549544 | 5_3:+49602430 | None:intergenic |
| TTGTGTACAGTAACCAAACT+TGG | 0.550375 | 5_3:-49598133 | Msa0815890:three_prime_UTR |
| AAAGAGGACAAGAATTGGAA+AGG | 0.558080 | 5_3:-49602581 | None:intergenic |
| ATAAAGCTTTGGGATCTTGG+TGG | 0.559424 | 5_3:-49601625 | Msa0815890:CDS |
| AATATGCGAAAAGTGACAAA+GGG | 0.561008 | 5_3:-49601658 | Msa0815890:CDS |
| AGTAAGATGTTGATACGATA+CGG | 0.569381 | 5_3:+49602470 | None:intergenic |
| TTGTTTCCAAGAACAAGCAA+AGG | 0.570676 | 5_3:+49598528 | None:intergenic |
| GTCTATGCATTACACTGGAA+AGG | 0.572286 | 5_3:+49598186 | None:intergenic |
| TTTACTCAAGAAACATTGCA+TGG | 0.572723 | 5_3:+49598101 | None:intergenic |
| GTATTATTGTGATCTAAATG+TGG | 0.574237 | 5_3:-49597989 | Msa0815890:three_prime_UTR |
| TTAAGGTCTATGCATTACAC+TGG | 0.574461 | 5_3:+49598181 | None:intergenic |
| AGAGGACAAGAATTGGAAAG+GGG | 0.581381 | 5_3:-49602579 | None:intergenic |
| ATGTGGGAGCGCTACTGTCG+CGG | 0.588919 | 5_3:-49601583 | Msa0815890:CDS |
| AAAGGAATCCCATTCAAGGA+AGG | 0.597544 | 5_3:+49598546 | None:intergenic |
| CAATATGCGAAAAGTGACAA+AGG | 0.599692 | 5_3:-49601659 | Msa0815890:CDS |
| GGTTTGTGGAATGTTAAGGA+AGG | 0.600095 | 5_3:+49602427 | None:intergenic |
| GGGATCTTGGTGGTCAACGG+AGG | 0.604641 | 5_3:-49601615 | Msa0815890:CDS |
| GAGGACAAGAATTGGAAAGG+GGG | 0.616430 | 5_3:-49602578 | None:intergenic |
| ACGGAGGTTTCGAACAATGT+GGG | 0.644507 | 5_3:-49601599 | Msa0815890:CDS |
| TAGATTCACACACAAAACAA+AGG | 0.655224 | 5_3:-49602545 | Msa0815890:five_prime_UTR |
| GGATTCTGTAAACATAGATG+TGG | 0.658596 | 5_3:-49598268 | Msa0815890:CDS |
| AACGGAGGTTTCGAACAATG+TGG | 0.660702 | 5_3:-49601600 | Msa0815890:CDS |
| TTGATGAGACCTATCAACAA+AGG | 0.681666 | 5_3:+49600552 | None:intergenic |
| CCAGTATCAAGAAAATCACA+AGG | 0.685548 | 5_3:-49600529 | Msa0815890:CDS |
| TGAGTCAATTAAAGACAGAG+AGG | 0.706022 | 5_3:-49598316 | Msa0815890:CDS |
| GTATCAAGAAAATCACAAGG+CGG | 0.799782 | 5_3:-49600526 | Msa0815890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTTGTTTAAAAATATT+TGG | - | chr5_3:49602449-49602468 | Msa0815890:five_prime_UTR | 10.0% |
| !! | AAAGAAATAAGAATAAAGAA+AGG | + | chr5_3:49598165-49598184 | None:intergenic | 15.0% |
| !! | AAATTCATACAAAATTACTT+GGG | + | chr5_3:49598405-49598424 | None:intergenic | 15.0% |
| !!! | TAATTTTAACTCATTATTAC+TGG | - | chr5_3:49598574-49598593 | Msa0815890:CDS | 15.0% |
| !! | AAATTTGAATTCAGAATTTA+AGG | - | chr5_3:49598723-49598742 | Msa0815890:intron | 15.0% |
| !! | TAACATAGAATTTAAATGTT+GGG | - | chr5_3:49599156-49599175 | Msa0815890:intron | 15.0% |
| !! | AGAAATTATAGATGATTATT+AGG | - | chr5_3:49599498-49599517 | Msa0815890:intron | 15.0% |
| !! | ATCATATGATATATAGTAAC+TGG | + | chr5_3:49598234-49598253 | None:intergenic | 20.0% |
| !! | TTACTCTAATACAAATTTAG+AGG | + | chr5_3:49598319-49598338 | None:intergenic | 20.0% |
| !! | CAAATTCATACAAAATTACT+TGG | + | chr5_3:49598406-49598425 | None:intergenic | 20.0% |
| !!! | CTTATTTTTTAAACAAGAGA+TGG | - | chr5_3:49598466-49598485 | Msa0815890:intron | 20.0% |
| !! | GTAACATAGAATTTAAATGT+TGG | - | chr5_3:49599155-49599174 | Msa0815890:intron | 20.0% |
| !! | TAAAGATAAAGTTACCTTAT+TGG | + | chr5_3:49600667-49600686 | None:intergenic | 20.0% |
| !!! | TTAAAAAAAAAAAGAGCATC+TGG | + | chr5_3:49600998-49601017 | None:intergenic | 20.0% |
| !!! | GATGCTCTTTTTTTTTTTAA+CGG | - | chr5_3:49600998-49601017 | Msa0815890:intron | 20.0% |
| !!! | ATCTTGATAATAAAAAACAG+TGG | + | chr5_3:49601400-49601419 | None:intergenic | 20.0% |
| !! | TTTATTATCAAGATGTTGAT+TGG | - | chr5_3:49601406-49601425 | Msa0815890:intron | 20.0% |
| !! | GTTCAAACATAGAAATATAA+AGG | - | chr5_3:49601451-49601470 | Msa0815890:intron | 20.0% |
| !!! | AGACTTTTATTGAACAATTT+TGG | - | chr5_3:49601481-49601500 | Msa0815890:intron | 20.0% |
| !!! | TTTTATGAATAAACAGAGAA+AGG | + | chr5_3:49601624-49601643 | None:intergenic | 20.0% |
| !!! | AGTTATGTTTTTATTACGTA+AGG | + | chr5_3:49601659-49601678 | None:intergenic | 20.0% |
| !!! | AAGCAATTTGTTTAAATTGT+TGG | + | chr5_3:49602558-49602577 | None:intergenic | 20.0% |
| ! | AAGAATAAAGAAAGGAAAGT+GGG | + | chr5_3:49598157-49598176 | None:intergenic | 25.0% |
| ! | TAAGAATAAAGAAAGGAAAG+TGG | + | chr5_3:49598158-49598177 | None:intergenic | 25.0% |
| ! | ATGATATATAGTAACTGGAA+TGG | + | chr5_3:49598229-49598248 | None:intergenic | 25.0% |
| ! | ATTAGAGTAAAGATCCAATT+TGG | - | chr5_3:49598329-49598348 | Msa0815890:intron | 25.0% |
| ! | AAAATTGCGAATAACCAAAT+TGG | + | chr5_3:49598346-49598365 | None:intergenic | 25.0% |
| ! | AAAGTAAAGATACTTACAGT+TGG | + | chr5_3:49598697-49598716 | None:intergenic | 25.0% |
| !!! | GAATTTTGCTATTGAACTTT+AGG | - | chr5_3:49598771-49598790 | Msa0815890:intron | 25.0% |
| ! | AAATGTCACAATAAAGCTTT+GGG | - | chr5_3:49598825-49598844 | Msa0815890:intron | 25.0% |
| !!! | TCCTTTGTCATTTTTTTTGA+AGG | - | chr5_3:49598978-49598997 | Msa0815890:intron | 25.0% |
| ! | ACCTTCAAAAAAAATGACAA+AGG | + | chr5_3:49598982-49599001 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGAAGGTTGTGT+TGG | - | chr5_3:49598987-49599006 | Msa0815890:intron | 25.0% |
| ! | GGAGAAATAAGAAAATACTA+AGG | - | chr5_3:49599124-49599143 | Msa0815890:intron | 25.0% |
| !!! | TAGTTGTTTTATATGCAGTA+GGG | - | chr5_3:49599194-49599213 | Msa0815890:intron | 25.0% |
| ! | CAGCAATGATTGAATTAATA+TGG | - | chr5_3:49599241-49599260 | Msa0815890:intron | 25.0% |
| !!! | ATTAATATGGTGTTGTTCTA+AGG | - | chr5_3:49599254-49599273 | Msa0815890:intron | 25.0% |
| !! | TGTGATAATTGTTTTCTCAT+AGG | - | chr5_3:49599326-49599345 | Msa0815890:intron | 25.0% |
| ! | TTTATTATAAACCCTATAGC+TGG | - | chr5_3:49599430-49599449 | Msa0815890:intron | 25.0% |
| !! | ACCTATTCTAGATCTAAAAT+TGG | - | chr5_3:49599648-49599667 | Msa0815890:intron | 25.0% |
| !!! | TCCAATTTTAGATCTAGAAT+AGG | + | chr5_3:49599652-49599671 | None:intergenic | 25.0% |
| ! | ATTGGACATATTTATACAAG+TGG | + | chr5_3:49599675-49599694 | None:intergenic | 25.0% |
| ! | TACTTGTCATTCTTAGAATT+TGG | + | chr5_3:49599787-49599806 | None:intergenic | 25.0% |
| !! | AAATTCTAAGAATGACAAGT+AGG | - | chr5_3:49599786-49599805 | Msa0815890:intron | 25.0% |
| !! | AATTCTAAGAATGACAAGTA+GGG | - | chr5_3:49599787-49599806 | Msa0815890:intron | 25.0% |
| ! | TGAAGTAGACTCTTATAAAA+CGG | - | chr5_3:49600206-49600225 | Msa0815890:intron | 25.0% |
| ! | AAAGCTAACAATTCTTCAAA+GGG | + | chr5_3:49600256-49600275 | None:intergenic | 25.0% |
| ! | AAAAGCTAACAATTCTTCAA+AGG | + | chr5_3:49600257-49600276 | None:intergenic | 25.0% |
| ! | AGTTCATCCTAAAATGATTT+CGG | - | chr5_3:49600546-49600565 | Msa0815890:CDS | 25.0% |
| !! | TTTCGGTTAGTCAATATAAT+TGG | - | chr5_3:49600563-49600582 | Msa0815890:CDS | 25.0% |
| !! | TTCGGTTAGTCAATATAATT+GGG | - | chr5_3:49600564-49600583 | Msa0815890:CDS | 25.0% |
| ! | AATATAATTGGGTCAAAACA+TGG | - | chr5_3:49600575-49600594 | Msa0815890:CDS | 25.0% |
| ! | ATATAATTGGGTCAAAACAT+GGG | - | chr5_3:49600576-49600595 | Msa0815890:CDS | 25.0% |
| ! | TAAGGTAACTTTATCTTTAG+TGG | - | chr5_3:49600668-49600687 | Msa0815890:intron | 25.0% |
| ! | TCAACAGTTTGTCTATATAT+TGG | + | chr5_3:49600819-49600838 | None:intergenic | 25.0% |
| ! | TGGTTATAAAAACAAGTATC+AGG | + | chr5_3:49601380-49601399 | None:intergenic | 25.0% |
| !! | CTATAGTAAAATCTAAAGTC+TGG | + | chr5_3:49601516-49601535 | None:intergenic | 25.0% |
| !! | CAGACTTTAGATTTTACTAT+AGG | - | chr5_3:49601514-49601533 | Msa0815890:intron | 25.0% |
| ! | TTACAGAATTATAAGAGTCT+TGG | - | chr5_3:49601546-49601565 | Msa0815890:intron | 25.0% |
| ! | TTATCAGAGAAAAATACAAG+AGG | + | chr5_3:49601703-49601722 | None:intergenic | 25.0% |
| !! | TTTAATTCACTTCGAGTTAT+TGG | + | chr5_3:49601878-49601897 | None:intergenic | 25.0% |
| !!! | ACAGTAATGATGATGATTTT+CGG | + | chr5_3:49602029-49602048 | None:intergenic | 25.0% |
| !!! | ATAGACCTTAATTTTAGTTG+TGG | - | chr5_3:49602291-49602310 | Msa0815890:intron | 25.0% |
| !!! | TAGACCTTAATTTTAGTTGT+GGG | - | chr5_3:49602292-49602311 | Msa0815890:intron | 25.0% |
| ! | GTATTATTGTGATCTAAATG+TGG | - | chr5_3:49602471-49602490 | Msa0815890:five_prime_UTR | 25.0% |
| TAGATTCACACACAAAACAA+AGG | - | chr5_3:49597915-49597934 | Msa0815890:three_prime_UTR | 30.0% | |
| AGAATAAAAACACACAACGT+AGG | + | chr5_3:49597969-49597988 | None:intergenic | 30.0% | |
| AGTAAGATGTTGATACGATA+CGG | + | chr5_3:49597993-49598012 | None:intergenic | 30.0% | |
| TGAATGAATACGAAGAAAGA+AGG | + | chr5_3:49598080-49598099 | None:intergenic | 30.0% | |
| ATTCATTCATTCTCAACGAA+TGG | - | chr5_3:49598091-49598110 | Msa0815890:three_prime_UTR | 30.0% | |
| TTCATTCATTCTCAACGAAT+GGG | - | chr5_3:49598092-49598111 | Msa0815890:three_prime_UTR | 30.0% | |
| TTAGAGGTTTAACAACATCA+AGG | + | chr5_3:49598303-49598322 | None:intergenic | 30.0% | |
| ! | GATTGTGAATTTGTGTGTTT+TGG | - | chr5_3:49598440-49598459 | Msa0815890:intron | 30.0% |
| !!! | TTTGTTTTGTTTGACAGACA+GGG | - | chr5_3:49598650-49598669 | Msa0815890:intron | 30.0% |
| !! | TTTGCTATTGAACTTTAGGT+TGG | - | chr5_3:49598775-49598794 | Msa0815890:intron | 30.0% |
| ! | TTGCTATTGAACTTTAGGTT+GGG | - | chr5_3:49598776-49598795 | Msa0815890:intron | 30.0% |
| AATATGCGAAAAGTGACAAA+GGG | - | chr5_3:49598802-49598821 | Msa0815890:intron | 30.0% | |
| GAAATGTCACAATAAAGCTT+TGG | - | chr5_3:49598824-49598843 | Msa0815890:intron | 30.0% | |
| !! | CTAGTTGTTTTATATGCAGT+AGG | - | chr5_3:49599193-49599212 | Msa0815890:intron | 30.0% |
| AAAAGGGCTACTAAGTAAAT+TGG | + | chr5_3:49599548-49599567 | None:intergenic | 30.0% | |
| TCATTCTTAGAATTTGGACT+AGG | + | chr5_3:49599781-49599800 | None:intergenic | 30.0% | |
| !! | ATTGGTTTGATCTTCTCAAA+GGG | - | chr5_3:49600155-49600174 | Msa0815890:intron | 30.0% |
| TAGACTCTTATAAAACGGTA+TGG | - | chr5_3:49600211-49600230 | Msa0815890:intron | 30.0% | |
| AGACTCTTATAAAACGGTAT+GGG | - | chr5_3:49600212-49600231 | Msa0815890:intron | 30.0% | |
| ! | ACGTATTGTTAAGGTAGTTT+TGG | + | chr5_3:49600338-49600357 | None:intergenic | 30.0% |
| GAAATACTCACGTATTGTTA+AGG | + | chr5_3:49600347-49600366 | None:intergenic | 30.0% | |
| !! | TGAACCTTCCATTTTAAAGA+TGG | + | chr5_3:49600385-49600404 | None:intergenic | 30.0% |
| ! | TGACTAACCGAAATCATTTT+AGG | + | chr5_3:49600556-49600575 | None:intergenic | 30.0% |
| AAATTGAGGAACAATTAGTG+TGG | - | chr5_3:49600638-49600657 | Msa0815890:intron | 30.0% | |
| ! | CTTTTCAATGAATGAAGAAG+AGG | - | chr5_3:49600927-49600946 | Msa0815890:intron | 30.0% |
| TCCTCATTCTTTCAAACATT+AGG | - | chr5_3:49600963-49600982 | Msa0815890:intron | 30.0% | |
| CCTCATTCTTTCAAACATTA+GGG | - | chr5_3:49600964-49600983 | Msa0815890:intron | 30.0% | |
| TAAAAACAAGTATCAGGAAG+TGG | + | chr5_3:49601374-49601393 | None:intergenic | 30.0% | |
| !!! | TTGAACAATTTTGGTTACTG+AGG | - | chr5_3:49601490-49601509 | Msa0815890:intron | 30.0% |
| AGTTATTGTATGGTTATGGT+AGG | + | chr5_3:49601578-49601597 | None:intergenic | 30.0% | |
| GGATAGTTATTGTATGGTTA+TGG | + | chr5_3:49601582-49601601 | None:intergenic | 30.0% | |
| TGAATAAACAGAGAAAGGAA+AGG | + | chr5_3:49601619-49601638 | None:intergenic | 30.0% | |
| TTAACACATGCTTCATATTG+TGG | - | chr5_3:49601729-49601748 | Msa0815890:intron | 30.0% | |
| ! | GTTTGTTCTTTCGAGTAATT+AGG | - | chr5_3:49601759-49601778 | Msa0815890:intron | 30.0% |
| TAATTAGGAGTTGCATTTCT+TGG | - | chr5_3:49601774-49601793 | Msa0815890:intron | 30.0% | |
| AGTTGTGTTTGCTTTAATCA+TGG | - | chr5_3:49601806-49601825 | Msa0815890:intron | 30.0% | |
| TTGACCCACAACTAAAATTA+AGG | + | chr5_3:49602299-49602318 | None:intergenic | 30.0% | |
| TTTACTCAAGAAACATTGCA+TGG | + | chr5_3:49602362-49602381 | None:intergenic | 30.0% | |
| ! | CTTGATATTGTACCAAGTTT+TGG | - | chr5_3:49602389-49602408 | Msa0815890:five_prime_UTR | 30.0% |
| !!! | ATATTGTACCAAGTTTTGGA+TGG | - | chr5_3:49602393-49602412 | Msa0815890:five_prime_UTR | 30.0% |
| TGGAAAAAAGATCAGTATTG+AGG | - | chr5_3:49602491-49602510 | Msa0815890:five_prime_UTR | 30.0% | |
| ! | ATTGTTGGCACATTTTCATA+TGG | + | chr5_3:49602543-49602562 | None:intergenic | 30.0% |
| ! | AACAAATTGCTTCGTTGATT+TGG | - | chr5_3:49602566-49602585 | Msa0815890:five_prime_UTR | 30.0% |
| ! | GAATGGTTTGTGGAATGTTA+AGG | + | chr5_3:49598040-49598059 | None:intergenic | 35.0% |
| ACATTCCACAAACCATTCAT+TGG | - | chr5_3:49598042-49598061 | Msa0815890:three_prime_UTR | 35.0% | |
| AAACTTTAGCGACCAATGAA+TGG | + | chr5_3:49598057-49598076 | None:intergenic | 35.0% | |
| GTGACTATGGTTTCATAGTT+TGG | - | chr5_3:49598614-49598633 | Msa0815890:CDS | 35.0% | |
| !!! | GTTTGTTTTGTTTGACAGAC+AGG | - | chr5_3:49598649-49598668 | Msa0815890:intron | 35.0% |
| !!! | TTGTTTTGTTTGACAGACAG+GGG | - | chr5_3:49598651-49598670 | Msa0815890:intron | 35.0% |
| CAATATGCGAAAAGTGACAA+AGG | - | chr5_3:49598801-49598820 | Msa0815890:intron | 35.0% | |
| !! | ACAATAAAGCTTTGGGATCT+TGG | - | chr5_3:49598832-49598851 | Msa0815890:intron | 35.0% |
| TTCTGTTAGAACCCAAAGTT+AGG | - | chr5_3:49599053-49599072 | Msa0815890:intron | 35.0% | |
| CAGAAAACAAGCCTAAAATG+TGG | - | chr5_3:49599088-49599107 | Msa0815890:intron | 35.0% | |
| !! | AATATGGTGTTGTTCTAAGG+AGG | - | chr5_3:49599257-49599276 | Msa0815890:intron | 35.0% |
| ! | GGAGGACTTATGTAAGTTTT+TGG | - | chr5_3:49599275-49599294 | Msa0815890:intron | 35.0% |
| ! | TTGGATTGGATCACAAAAGT+CGG | + | chr5_3:49599457-49599476 | None:intergenic | 35.0% |
| ! | TTTTGTGATCCAATCCAAGA+GGG | - | chr5_3:49599459-49599478 | Msa0815890:intron | 35.0% |
| ! | GCTATATTTCAAGTCGATGT+GGG | + | chr5_3:49599526-49599545 | None:intergenic | 35.0% |
| ! | AGATTAGCCAAGGCTTAAAA+GGG | + | chr5_3:49599564-49599583 | None:intergenic | 35.0% |
| ! | AAGATTAGCCAAGGCTTAAA+AGG | + | chr5_3:49599565-49599584 | None:intergenic | 35.0% |
| AATAGGTTGCGATACCATAT+TGG | + | chr5_3:49599635-49599654 | None:intergenic | 35.0% | |
| TATGTCCAATACTAGATGTG+AGG | - | chr5_3:49599685-49599704 | Msa0815890:intron | 35.0% | |
| ATGTCCAATACTAGATGTGA+GGG | - | chr5_3:49599686-49599705 | Msa0815890:intron | 35.0% | |
| !!! | AATGTGACTGAACTAGCTTT+TGG | - | chr5_3:49599748-49599767 | Msa0815890:intron | 35.0% |
| !!! | ATGTGACTGAACTAGCTTTT+GGG | - | chr5_3:49599749-49599768 | Msa0815890:intron | 35.0% |
| ATCTGTTGGAAGAATTCAAG+AGG | - | chr5_3:49599813-49599832 | Msa0815890:intron | 35.0% | |
| TCTGTTGGAAGAATTCAAGA+GGG | - | chr5_3:49599814-49599833 | Msa0815890:intron | 35.0% | |
| GAGATTCATCCTTTGTTGAT+AGG | - | chr5_3:49599899-49599918 | Msa0815890:intron | 35.0% | |
| TTGATGAGACCTATCAACAA+AGG | + | chr5_3:49599911-49599930 | None:intergenic | 35.0% | |
| ! | CCTTGTGATTTTCTTGATAC+TGG | + | chr5_3:49599934-49599953 | None:intergenic | 35.0% |
| CCAGTATCAAGAAAATCACA+AGG | - | chr5_3:49599931-49599950 | Msa0815890:intron | 35.0% | |
| GTATCAAGAAAATCACAAGG+CGG | - | chr5_3:49599934-49599953 | Msa0815890:intron | 35.0% | |
| AAAATCACAAGGCGGTTATT+GGG | - | chr5_3:49599942-49599961 | Msa0815890:intron | 35.0% | |
| CTAACTGTTCTGTCAAACAT+AGG | + | chr5_3:49600003-49600022 | None:intergenic | 35.0% | |
| AACACATATCATGGATCACT+AGG | - | chr5_3:49600047-49600066 | Msa0815890:intron | 35.0% | |
| AAACACAACTGAAGAAGTCA+AGG | - | chr5_3:49600093-49600112 | Msa0815890:intron | 35.0% | |
| AATTAGCTGGCCATATATGA+GGG | - | chr5_3:49600120-49600139 | Msa0815890:intron | 35.0% | |
| !! | CATTGGTTTGATCTTCTCAA+AGG | - | chr5_3:49600154-49600173 | Msa0815890:intron | 35.0% |
| TACTTCAACTTATCCCAAGT+CGG | + | chr5_3:49600193-49600212 | None:intergenic | 35.0% | |
| GACTCTTATAAAACGGTATG+GGG | - | chr5_3:49600213-49600232 | Msa0815890:intron | 35.0% | |
| ACTCTTATAAAACGGTATGG+GGG | - | chr5_3:49600214-49600233 | Msa0815890:intron | 35.0% | |
| !!! | TTGTTAGCTTTTCGACTGTT+CGG | - | chr5_3:49600265-49600284 | Msa0815890:intron | 35.0% |
| GGTACTATTGAGCAATATAG+AGG | - | chr5_3:49600286-49600305 | Msa0815890:intron | 35.0% | |
| !!! | TTAAGGTAGTTTTGGTACCT+TGG | + | chr5_3:49600330-49600349 | None:intergenic | 35.0% |
| ATACGTGAGTATTTCATGAG+TGG | - | chr5_3:49600352-49600371 | Msa0815890:intron | 35.0% | |
| ! | GTCTTCAGCCATCTTTAAAA+TGG | - | chr5_3:49600374-49600393 | Msa0815890:intron | 35.0% |
| !! | TCAGCCATCTTTAAAATGGA+AGG | - | chr5_3:49600378-49600397 | Msa0815890:intron | 35.0% |
| ! | ATCAACTGCACTCTATTTTG+AGG | + | chr5_3:49600418-49600437 | None:intergenic | 35.0% |
| TAGAGTGCAGTTGATTAGAA+TGG | - | chr5_3:49600423-49600442 | Msa0815890:intron | 35.0% | |
| GTTGATTAGAATGGCTTAGA+TGG | - | chr5_3:49600432-49600451 | Msa0815890:intron | 35.0% | |
| ATTAGAATGGCTTAGATGGA+AGG | - | chr5_3:49600436-49600455 | Msa0815890:intron | 35.0% | |
| ! | TTTAGGATGAACTGAACCTT+AGG | + | chr5_3:49600539-49600558 | None:intergenic | 35.0% |
| CTTGCTAGAACTTGAATCTA+TGG | + | chr5_3:49600604-49600623 | None:intergenic | 35.0% | |
| ACACGTGATCATACAAATTG+AGG | - | chr5_3:49600624-49600643 | Msa0815890:intron | 35.0% | |
| AATTAGTGTGGCTTCCAATA+AGG | - | chr5_3:49600650-49600669 | Msa0815890:intron | 35.0% | |
| TATCTTTAGTGGCGTTAACA+AGG | - | chr5_3:49600679-49600698 | Msa0815890:intron | 35.0% | |
| CGTTAACAAGGAAATGAGAA+GGG | - | chr5_3:49600691-49600710 | Msa0815890:intron | 35.0% | |
| GTTAACAAGGAAATGAGAAG+GGG | - | chr5_3:49600692-49600711 | Msa0815890:intron | 35.0% | |
| TTAACAAGGAAATGAGAAGG+GGG | - | chr5_3:49600693-49600712 | Msa0815890:intron | 35.0% | |
| AACTTAGAACGTAGAGCTAA+AGG | - | chr5_3:49600754-49600773 | Msa0815890:intron | 35.0% | |
| ACTTAGAACGTAGAGCTAAA+GGG | - | chr5_3:49600755-49600774 | Msa0815890:intron | 35.0% | |
| ACTGTTGATGTTGTTAGTGT+TGG | - | chr5_3:49600831-49600850 | Msa0815890:intron | 35.0% | |
| CCCTAATGTTTGAAAGAATG+AGG | + | chr5_3:49600967-49600986 | None:intergenic | 35.0% | |
| ! | TGTAACTTTGCTCCATTTTC+GGG | + | chr5_3:49601065-49601084 | None:intergenic | 35.0% |
| ! | CTGTAACTTTGCTCCATTTT+CGG | + | chr5_3:49601066-49601085 | None:intergenic | 35.0% |
| GGTTCTTTCATAGTCTGTTA+TGG | + | chr5_3:49601210-49601229 | None:intergenic | 35.0% | |
| ATGAAAGAACCGAAACGTTA+AGG | - | chr5_3:49601219-49601238 | Msa0815890:intron | 35.0% | |
| ! | GTGATGGGATAGTTATTGTA+TGG | + | chr5_3:49601588-49601607 | None:intergenic | 35.0% |
| ! | AGGAGAGTACAGAAATCAAT+TGG | + | chr5_3:49601683-49601702 | None:intergenic | 35.0% |
| TTAATCATGGATGCAATTGC+AGG | - | chr5_3:49601819-49601838 | Msa0815890:intron | 35.0% | |
| TTGTTTCCAAGAACAAGCAA+AGG | + | chr5_3:49601935-49601954 | None:intergenic | 35.0% | |
| TGAGTCAATTAAAGACAGAG+AGG | - | chr5_3:49602144-49602163 | Msa0815890:intron | 35.0% | |
| TTGCTACATGATTTCATGCA+AGG | - | chr5_3:49602171-49602190 | Msa0815890:intron | 35.0% | |
| GGATTCTGTAAACATAGATG+TGG | - | chr5_3:49602192-49602211 | Msa0815890:intron | 35.0% | |
| TTAAGGTCTATGCATTACAC+TGG | + | chr5_3:49602282-49602301 | None:intergenic | 35.0% | |
| TTGTGTACAGTAACCAAACT+TGG | - | chr5_3:49602327-49602346 | Msa0815890:intron | 35.0% | |
| ATGGAAGATTTGACCAAGTT+TGG | + | chr5_3:49602343-49602362 | None:intergenic | 35.0% | |
| AACAGAAACCATCCAAAACT+TGG | + | chr5_3:49602404-49602423 | None:intergenic | 35.0% | |
| !! | GAAGGAGGAGATGTTTTGTT+TGG | + | chr5_3:49598018-49598037 | None:intergenic | 40.0% |
| TTGTGGAATGTTAAGGAAGG+AGG | + | chr5_3:49598033-49598052 | None:intergenic | 40.0% | |
| GGTTTGTGGAATGTTAAGGA+AGG | + | chr5_3:49598036-49598055 | None:intergenic | 40.0% | |
| ! | TCTGGGATTCTCTTCTCAAT+TGG | - | chr5_3:49598117-49598136 | Msa0815890:three_prime_UTR | 40.0% |
| GTTGCTTGTTCTTGTGACTA+TGG | - | chr5_3:49598601-49598620 | Msa0815890:CDS | 40.0% | |
| !!! | TGTTTTGTTTGACAGACAGG+GGG | - | chr5_3:49598652-49598671 | Msa0815890:intron | 40.0% |
| !! | ATAAAGCTTTGGGATCTTGG+TGG | - | chr5_3:49598835-49598854 | Msa0815890:intron | 40.0% |
| ATGATCCAGGACCTAACTTT+GGG | + | chr5_3:49599067-49599086 | None:intergenic | 40.0% | |
| ! | GAGTACACAAGCCACATTTT+AGG | + | chr5_3:49599102-49599121 | None:intergenic | 40.0% |
| ! | AAATGTGGCTTGTGTACTCT+AGG | - | chr5_3:49599103-49599122 | Msa0815890:intron | 40.0% |
| ! | GTTTTCTCATAGGAGAGTCT+CGG | - | chr5_3:49599336-49599355 | Msa0815890:intron | 40.0% |
| !! | GAACTTCCCTATTAGCCTTA+AGG | + | chr5_3:49599362-49599381 | None:intergenic | 40.0% |
| AAGTTCATCTACCATATCCG+CGG | - | chr5_3:49599376-49599395 | Msa0815890:intron | 40.0% | |
| ! | CTTTTGTGATCCAATCCAAG+AGG | - | chr5_3:49599458-49599477 | Msa0815890:intron | 40.0% |
| TTTGTGATCCAATCCAAGAG+GGG | - | chr5_3:49599460-49599479 | Msa0815890:intron | 40.0% | |
| ! | GGCTATATTTCAAGTCGATG+TGG | + | chr5_3:49599527-49599546 | None:intergenic | 40.0% |
| ! | TTAGTAGCCCTTTTAAGCCT+TGG | - | chr5_3:49599554-49599573 | Msa0815890:intron | 40.0% |
| AATCCCATAAGCTACCTCAA+GGG | + | chr5_3:49599591-49599610 | None:intergenic | 40.0% | |
| TAATCCCATAAGCTACCTCA+AGG | + | chr5_3:49599592-49599611 | None:intergenic | 40.0% | |
| GCGATACCATATTGGAGTAT+GGG | + | chr5_3:49599627-49599646 | None:intergenic | 40.0% | |
| TGCGATACCATATTGGAGTA+TGG | + | chr5_3:49599628-49599647 | None:intergenic | 40.0% | |
| TGTCCAATACTAGATGTGAG+GGG | - | chr5_3:49599687-49599706 | Msa0815890:intron | 40.0% | |
| !!! | TGTGACTGAACTAGCTTTTG+GGG | - | chr5_3:49599750-49599769 | Msa0815890:intron | 40.0% |
| AGAATTCAAGAGGGCAAACA+TGG | - | chr5_3:49599823-49599842 | Msa0815890:intron | 40.0% | |
| GCATATGTGTCACAATACTG+AGG | - | chr5_3:49599849-49599868 | Msa0815890:intron | 40.0% | |
| TCACAATACTGAGGATTGCA+GGG | - | chr5_3:49599858-49599877 | Msa0815890:intron | 40.0% | |
| GAAAATCACAAGGCGGTTAT+TGG | - | chr5_3:49599941-49599960 | Msa0815890:intron | 40.0% | |
| AGTCCAAAAAACTCGTCTGA+CGG | - | chr5_3:49600021-49600040 | Msa0815890:intron | 40.0% | |
| TGACGGAACAACACATATCA+TGG | - | chr5_3:49600038-49600057 | Msa0815890:intron | 40.0% | |
| AAGTCAAGGTGAGAATTAGC+TGG | - | chr5_3:49600107-49600126 | Msa0815890:intron | 40.0% | |
| GAATTAGCTGGCCATATATG+AGG | - | chr5_3:49600119-49600138 | Msa0815890:intron | 40.0% | |
| ATTAGCTGGCCATATATGAG+GGG | - | chr5_3:49600121-49600140 | Msa0815890:intron | 40.0% | |
| !! | ATCCCAAGTCGGTTTTTCTT+CGG | + | chr5_3:49600182-49600201 | None:intergenic | 40.0% |
| TTATAAAACGGTATGGGGGA+TGG | - | chr5_3:49600218-49600237 | Msa0815890:intron | 40.0% | |
| TATAAAACGGTATGGGGGAT+GGG | - | chr5_3:49600219-49600238 | Msa0815890:intron | 40.0% | |
| !!! | TTTTGTGTTGATTCCCTCCA+AGG | - | chr5_3:49600310-49600329 | Msa0815890:intron | 40.0% |
| AGCCTCAAGAGATGGTTATT+GGG | - | chr5_3:49600471-49600490 | Msa0815890:intron | 40.0% | |
| TTCCCAATAACCATCTCTTG+AGG | + | chr5_3:49600476-49600495 | None:intergenic | 40.0% | |
| AGATGGTTATTGGGAAACAG+TGG | - | chr5_3:49600480-49600499 | Msa0815890:intron | 40.0% | |
| !!! | GAGGCAGCTTGTTAAGTTTT+CGG | - | chr5_3:49600508-49600527 | Msa0815890:intron | 40.0% |
| ! | TAAGTTTTCGGCCTAACCTA+AGG | - | chr5_3:49600520-49600539 | Msa0815890:CDS | 40.0% |
| GATGAACTGAACCTTAGGTT+AGG | + | chr5_3:49600534-49600553 | None:intergenic | 40.0% | |
| GCGTTAACAAGGAAATGAGA+AGG | - | chr5_3:49600690-49600709 | Msa0815890:intron | 40.0% | |
| ! | GTTGATGTTGTTAGTGTTGG+AGG | - | chr5_3:49600834-49600853 | Msa0815890:intron | 40.0% |
| !!! | GACTTTGGTCTTGGTGTTTT+GGG | + | chr5_3:49601169-49601188 | None:intergenic | 40.0% |
| !!! | TGACTTTGGTCTTGGTGTTT+TGG | + | chr5_3:49601170-49601189 | None:intergenic | 40.0% |
| ! | TTGTCTTGCTTTGGTGACTT+TGG | + | chr5_3:49601184-49601203 | None:intergenic | 40.0% |
| TTATGGCTCTTGTCTTGCTT+TGG | + | chr5_3:49601193-49601212 | None:intergenic | 40.0% | |
| AGACAAAGGCCTTAACGTTT+CGG | + | chr5_3:49601231-49601250 | None:intergenic | 40.0% | |
| ACCGCCTGTTTCAAGAATTT+GGG | - | chr5_3:49601319-49601338 | Msa0815890:intron | 40.0% | |
| ACCCAAATTCTTGAAACAGG+CGG | + | chr5_3:49601323-49601342 | None:intergenic | 40.0% | |
| GGTACCCAAATTCTTGAAAC+AGG | + | chr5_3:49601326-49601345 | None:intergenic | 40.0% | |
| TTCAAGAATTTGGGTACCTC+AGG | - | chr5_3:49601328-49601347 | Msa0815890:intron | 40.0% | |
| ! | ATCAAGATGTTGATTGGTCG+TGG | - | chr5_3:49601412-49601431 | Msa0815890:intron | 40.0% |
| AGAGAAAGGAAAGGAGAAAG+GGG | + | chr5_3:49601610-49601629 | None:intergenic | 40.0% | |
| CAGAGAAAGGAAAGGAGAAA+GGG | + | chr5_3:49601611-49601630 | None:intergenic | 40.0% | |
| ACAGAGAAAGGAAAGGAGAA+AGG | + | chr5_3:49601612-49601631 | None:intergenic | 40.0% | |
| TGACCAAACCTTCCTTGAAT+GGG | - | chr5_3:49601906-49601925 | Msa0815890:intron | 40.0% | |
| AATCCCATTCAAGGAAGGTT+TGG | + | chr5_3:49601912-49601931 | None:intergenic | 40.0% | |
| AAAGGAATCCCATTCAAGGA+AGG | + | chr5_3:49601917-49601936 | None:intergenic | 40.0% | |
| AAGCAAAGGAATCCCATTCA+AGG | + | chr5_3:49601921-49601940 | None:intergenic | 40.0% | |
| TTGATCTACCAATGCTTGCT+TGG | + | chr5_3:49601981-49602000 | None:intergenic | 40.0% | |
| AACCTTTGATTGTTCGACGT+TGG | - | chr5_3:49602105-49602124 | Msa0815890:intron | 40.0% | |
| AACCAACGTCGAACAATCAA+AGG | + | chr5_3:49602110-49602129 | None:intergenic | 40.0% | |
| GTCTATGCATTACACTGGAA+AGG | + | chr5_3:49602277-49602296 | None:intergenic | 40.0% | |
| AGCGACCAATGAATGGTTTG+TGG | + | chr5_3:49598050-49598069 | None:intergenic | 45.0% | |
| ATTCTCAACGAATGGGTCTC+TGG | - | chr5_3:49598099-49598118 | Msa0815890:three_prime_UTR | 45.0% | |
| TTCTCAACGAATGGGTCTCT+GGG | - | chr5_3:49598100-49598119 | Msa0815890:three_prime_UTR | 45.0% | |
| !! | AGGAAAGTGGGTTTTACCTG+CGG | + | chr5_3:49598145-49598164 | None:intergenic | 45.0% |
| CTTGTAGGTCTTCAGAATGC+TGG | - | chr5_3:49598497-49598516 | Msa0815890:CDS | 45.0% | |
| ! | TTTGGGATCTTGGTGGTCAA+CGG | - | chr5_3:49598842-49598861 | Msa0815890:intron | 45.0% |
| AACGGAGGTTTCGAACAATG+TGG | - | chr5_3:49598860-49598879 | Msa0815890:intron | 45.0% | |
| ACGGAGGTTTCGAACAATGT+GGG | - | chr5_3:49598861-49598880 | Msa0815890:intron | 45.0% | |
| TAGAACCCAAAGTTAGGTCC+TGG | - | chr5_3:49599059-49599078 | Msa0815890:intron | 45.0% | |
| CATGATCCAGGACCTAACTT+TGG | + | chr5_3:49599068-49599087 | None:intergenic | 45.0% | |
| !! | GCTTGTTTTCTGCATGATCC+AGG | + | chr5_3:49599080-49599099 | None:intergenic | 45.0% |
| TCTCGGCCTTAAGGCTAATA+GGG | - | chr5_3:49599353-49599372 | Msa0815890:intron | 45.0% | |
| AGTTCATCTACCATATCCGC+GGG | - | chr5_3:49599377-49599396 | Msa0815890:intron | 45.0% | |
| ! | ACAAAGAGTACATCAACCCG+CGG | + | chr5_3:49599396-49599415 | None:intergenic | 45.0% |
| CAAAAGTCGGACCAGCTATA+GGG | + | chr5_3:49599444-49599463 | None:intergenic | 45.0% | |
| ACAAAAGTCGGACCAGCTAT+AGG | + | chr5_3:49599445-49599464 | None:intergenic | 45.0% | |
| ATCCCATAAGCTACCTCAAG+GGG | + | chr5_3:49599590-49599609 | None:intergenic | 45.0% | |
| ! | CCATATTGGAGTATGGGCTA+GGG | + | chr5_3:49599621-49599640 | None:intergenic | 45.0% |
| ACCATATTGGAGTATGGGCT+AGG | + | chr5_3:49599622-49599641 | None:intergenic | 45.0% | |
| GTCCAATACTAGATGTGAGG+GGG | - | chr5_3:49599688-49599707 | Msa0815890:intron | 45.0% | |
| TCCAATACTAGATGTGAGGG+GGG | - | chr5_3:49599689-49599708 | Msa0815890:intron | 45.0% | |
| ! | GACAAGTAGGGTTGATCTGT+TGG | - | chr5_3:49599799-49599818 | Msa0815890:intron | 45.0% |
| GTCACAATACTGAGGATTGC+AGG | - | chr5_3:49599857-49599876 | Msa0815890:intron | 45.0% | |
| !!! | GTTCCGTCAGACGAGTTTTT+TGG | + | chr5_3:49600027-49600046 | None:intergenic | 45.0% |
| ! | GACCGAAGAAAAACCGACTT+GGG | - | chr5_3:49600177-49600196 | Msa0815890:intron | 45.0% |
| !!! | GGTAGTTTTGGTACCTTGGA+GGG | + | chr5_3:49600326-49600345 | None:intergenic | 45.0% |
| !!! | AGGTAGTTTTGGTACCTTGG+AGG | + | chr5_3:49600327-49600346 | None:intergenic | 45.0% |
| CAGCCTCAAGAGATGGTTAT+TGG | - | chr5_3:49600470-49600489 | Msa0815890:intron | 45.0% | |
| TGGTTATTGGGAAACAGTGG+TGG | - | chr5_3:49600483-49600502 | Msa0815890:intron | 45.0% | |
| TTATTGGGAAACAGTGGTGG+TGG | - | chr5_3:49600486-49600505 | Msa0815890:intron | 45.0% | |
| AAAGGGTTGTGCTTCAAGTG+TGG | - | chr5_3:49600772-49600791 | Msa0815890:intron | 45.0% | |
| GTGGTGAAGAATTCCATTCG+CGG | - | chr5_3:49600791-49600810 | Msa0815890:intron | 45.0% | |
| !! | CTATATATTGGTGCCGCGAA+TGG | + | chr5_3:49600807-49600826 | None:intergenic | 45.0% |
| GGTTCATCTTGTGCTCGATT+TGG | + | chr5_3:49601044-49601063 | None:intergenic | 45.0% | |
| GCACAAGATGAACCCGAAAA+TGG | - | chr5_3:49601050-49601069 | Msa0815890:intron | 45.0% | |
| ACAACAAAACACCCAGCCAA+AGG | - | chr5_3:49601092-49601111 | Msa0815890:intron | 45.0% | |
| !!! | GTCTTGGTGTTTTGGGATCT+TGG | + | chr5_3:49601162-49601181 | None:intergenic | 45.0% |
| ! | TGCTTTGGTGACTTTGGTCT+TGG | + | chr5_3:49601178-49601197 | None:intergenic | 45.0% |
| ATTCTTGAAACAGGCGGTGT+AGG | + | chr5_3:49601317-49601336 | None:intergenic | 45.0% | |
| CACCGCCTGTTTCAAGAATT+TGG | - | chr5_3:49601318-49601337 | Msa0815890:intron | 45.0% | |
| TACCTCAGGTCGTAATAGCT+TGG | - | chr5_3:49601342-49601361 | Msa0815890:intron | 45.0% | |
| ATCCAAGCTATTACGACCTG+AGG | + | chr5_3:49601347-49601366 | None:intergenic | 45.0% | |
| TCGTGGATGCTGATAGAAAC+TGG | - | chr5_3:49601429-49601448 | Msa0815890:intron | 45.0% | |
| ! | CATTCAAGGAAGGTTTGGTC+AGG | + | chr5_3:49601907-49601926 | None:intergenic | 45.0% |
| CTGACCAAACCTTCCTTGAA+TGG | - | chr5_3:49601905-49601924 | Msa0815890:intron | 45.0% | |
| GGGATTCCTTTGCTTGTTCT+TGG | - | chr5_3:49601926-49601945 | Msa0815890:intron | 45.0% | |
| AGCTCTTTCCAAGCAAGCAT+TGG | - | chr5_3:49601970-49601989 | Msa0815890:CDS | 45.0% | |
| ! | TCGACGTTGGTTGATTTCAG+AGG | - | chr5_3:49602118-49602137 | Msa0815890:intron | 45.0% |
| ACATAGATGTGGTCATCGAC+TGG | - | chr5_3:49602203-49602222 | Msa0815890:intron | 45.0% | |
| GAGATGGAGCTGTCTCTTGT+AGG | - | chr5_3:49598482-49598501 | Msa0815890:CDS | 50.0% | |
| ATAGGAGAGTCTCGGCCTTA+AGG | - | chr5_3:49599344-49599363 | Msa0815890:intron | 50.0% | |
| GTCTCGGCCTTAAGGCTAAT+AGG | - | chr5_3:49599352-49599371 | Msa0815890:intron | 50.0% | |
| AGTACATCAACCCGCGGATA+TGG | + | chr5_3:49599390-49599409 | None:intergenic | 50.0% | |
| !! | GCGGGTTGATGTACTCTTTG+TGG | - | chr5_3:49599395-49599414 | Msa0815890:intron | 50.0% |
| TGATCCAATCCAAGAGGGGA+GGG | - | chr5_3:49599464-49599483 | Msa0815890:intron | 50.0% | |
| AATTCACAACCCTCCCCTCT+TGG | + | chr5_3:49599476-49599495 | None:intergenic | 50.0% | |
| ! | CAAGGGGTGAAGATTAGCCA+AGG | + | chr5_3:49599574-49599593 | None:intergenic | 50.0% |
| TGGCTAATCTTCACCCCTTG+AGG | - | chr5_3:49599574-49599593 | Msa0815890:intron | 50.0% | |
| TCACCCCTTGAGGTAGCTTA+TGG | - | chr5_3:49599584-49599603 | Msa0815890:intron | 50.0% | |
| CACCCCTTGAGGTAGCTTAT+GGG | - | chr5_3:49599585-49599604 | Msa0815890:intron | 50.0% | |
| CCCTAGCCCATACTCCAATA+TGG | - | chr5_3:49599618-49599637 | Msa0815890:intron | 50.0% | |
| ACCCCCCTCACATCTAGTAT+TGG | + | chr5_3:49599693-49599712 | None:intergenic | 50.0% | |
| AATACTAGATGTGAGGGGGG+TGG | - | chr5_3:49599692-49599711 | Msa0815890:intron | 50.0% | |
| GCTGTTCCTCCCCTCATATA+TGG | + | chr5_3:49600133-49600152 | None:intergenic | 50.0% | |
| GGACCGAAGAAAAACCGACT+TGG | - | chr5_3:49600176-49600195 | Msa0815890:intron | 50.0% | |
| CAAAGAAGCCATAGCGTCAC+AGG | + | chr5_3:49601264-49601283 | None:intergenic | 50.0% | |
| CTGTGACGCTATGGCTTCTT+TGG | - | chr5_3:49601262-49601281 | Msa0815890:intron | 50.0% | |
| GGAAAGGAGAAAGGGGTGAT+GGG | + | chr5_3:49601603-49601622 | None:intergenic | 50.0% | |
| AGGAAAGGAGAAAGGGGTGA+TGG | + | chr5_3:49601604-49601623 | None:intergenic | 50.0% | |
| ! | CTCTTCTCAATTGGCTCCGC+AGG | - | chr5_3:49598126-49598145 | Msa0815890:three_prime_UTR | 55.0% |
| ACAGACAGGGGGATACAGTG+AGG | - | chr5_3:49598663-49598682 | Msa0815890:intron | 55.0% | |
| GTGATCCAATCCAAGAGGGG+AGG | - | chr5_3:49599463-49599482 | Msa0815890:intron | 55.0% | |
| ACAACCCTCCCCTCTTGGAT+TGG | + | chr5_3:49599471-49599490 | None:intergenic | 55.0% | |
| AGCTGGCCATATATGAGGGG+AGG | - | chr5_3:49600124-49600143 | Msa0815890:intron | 55.0% | |
| TGAGGGGAGGAACAGCTCAT+TGG | - | chr5_3:49600137-49600156 | Msa0815890:intron | 55.0% | |
| CACTCTGCAGCCTCAAGAGA+TGG | - | chr5_3:49600463-49600482 | Msa0815890:intron | 55.0% | |
| !! | TTGGGAAACAGTGGTGGTGG+AGG | - | chr5_3:49600489-49600508 | Msa0815890:intron | 55.0% |
| TGACTCGTGACGTGAGCCTT+TGG | + | chr5_3:49601111-49601130 | None:intergenic | 55.0% | |
| AGAAGCCATAGCGTCACAGG+CGG | + | chr5_3:49601261-49601280 | None:intergenic | 55.0% | |
| AAACAGGCGGTGTAGGTGGT+AGG | + | chr5_3:49601310-49601329 | None:intergenic | 55.0% | |
| CTTGAAACAGGCGGTGTAGG+TGG | + | chr5_3:49601314-49601333 | None:intergenic | 55.0% | |
| ! | GGGATCTTGGTGGTCAACGG+AGG | - | chr5_3:49598845-49598864 | Msa0815890:intron | 60.0% |
| !! | ATGTGGGAGCGCTACTGTCG+CGG | - | chr5_3:49598877-49598896 | Msa0815890:intron | 60.0% |
| CGTGACGTGAGCCTTTGGCT+GGG | + | chr5_3:49601106-49601125 | None:intergenic | 60.0% | |
| TCGTGACGTGAGCCTTTGGC+TGG | + | chr5_3:49601107-49601126 | None:intergenic | 60.0% | |
| CAGGCGGAGGTCAGAGACAA+AGG | + | chr5_3:49601245-49601264 | None:intergenic | 60.0% | |
| !! | GTGTAGGTGGTAGGCGTCGA+AGG | + | chr5_3:49601301-49601320 | None:intergenic | 60.0% |
| GACCTCCGCCTGTGACGCTA+TGG | - | chr5_3:49601253-49601272 | Msa0815890:intron | 65.0% | |
| AGCCATAGCGTCACAGGCGG+AGG | + | chr5_3:49601258-49601277 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 49597893 | 49602589 | 49597893 | ID=Msa0815890;Name=Msa0815890 |
| chr5_3 | mRNA | 49597893 | 49602589 | 49597893 | ID=Msa0815890-mRNA-1;Parent=Msa0815890;Name=Msa0815890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=217|0.66|0.85|0.85|1|1|7|334|214 |
| chr5_3 | exon | 49597893 | 49598344 | 49597893 | ID=Msa0815890-mRNA-1:exon:14959;Parent=Msa0815890-mRNA-1 |
| chr5_3 | exon | 49598480 | 49598641 | 49598480 | ID=Msa0815890-mRNA-1:exon:14958;Parent=Msa0815890-mRNA-1 |
| chr5_3 | exon | 49600514 | 49600603 | 49600514 | ID=Msa0815890-mRNA-1:exon:14957;Parent=Msa0815890-mRNA-1 |
| chr5_3 | exon | 49601568 | 49601689 | 49601568 | ID=Msa0815890-mRNA-1:exon:14956;Parent=Msa0815890-mRNA-1 |
| chr5_3 | exon | 49601783 | 49601815 | 49601783 | ID=Msa0815890-mRNA-1:exon:14955;Parent=Msa0815890-mRNA-1 |
| chr5_3 | exon | 49601935 | 49602016 | 49601935 | ID=Msa0815890-mRNA-1:exon:14954;Parent=Msa0815890-mRNA-1 |
| chr5_3 | exon | 49602335 | 49602589 | 49602335 | ID=Msa0815890-mRNA-1:exon:14953;Parent=Msa0815890-mRNA-1 |
| chr5_3 | five_prime_UTR | 49602373 | 49602589 | 49602373 | ID=Msa0815890-mRNA-1:five_prime_utr;Parent=Msa0815890-mRNA-1 |
| chr5_3 | CDS | 49602335 | 49602372 | 49602335 | ID=Msa0815890-mRNA-1:cds;Parent=Msa0815890-mRNA-1 |
| chr5_3 | CDS | 49601935 | 49602016 | 49601935 | ID=Msa0815890-mRNA-1:cds;Parent=Msa0815890-mRNA-1 |
| chr5_3 | CDS | 49601783 | 49601815 | 49601783 | ID=Msa0815890-mRNA-1:cds;Parent=Msa0815890-mRNA-1 |
| chr5_3 | CDS | 49601568 | 49601689 | 49601568 | ID=Msa0815890-mRNA-1:cds;Parent=Msa0815890-mRNA-1 |
| chr5_3 | CDS | 49600514 | 49600603 | 49600514 | ID=Msa0815890-mRNA-1:cds;Parent=Msa0815890-mRNA-1 |
| chr5_3 | CDS | 49598480 | 49598641 | 49598480 | ID=Msa0815890-mRNA-1:cds;Parent=Msa0815890-mRNA-1 |
| chr5_3 | CDS | 49598227 | 49598344 | 49598227 | ID=Msa0815890-mRNA-1:cds;Parent=Msa0815890-mRNA-1 |
| chr5_3 | three_prime_UTR | 49597893 | 49598226 | 49597893 | ID=Msa0815890-mRNA-1:three_prime_utr;Parent=Msa0815890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
