Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856190 | KAF4399784.1 | 83.568 | 213 | 31 | 1 | 1 | 213 | 1 | 209 | 1.02e-122 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856190 | sp|Q8W4C8|ARL8C_ARATH | 80.751 | 213 | 11 | 1 | 1 | 213 | 1 | 183 | 1.60e-122 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856190 | G7K1N4 | 85.981 | 214 | 0 | 1 | 1 | 214 | 1 | 184 | 2.63e-125 | 361 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0815890 | Msa0856190 | 0.820270 | 7.496589e-53 | -8.615850e-47 |
| Msa0227910 | Msa0856190 | 0.965857 | 3.753992e-125 | -8.615850e-47 |
| Msa0856190 | Msa0945840 | 0.913249 | 7.655432e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856190 | MtrunA17_Chr5g0434561 | 85.981 | 214 | 0 | 1 | 1 | 214 | 1 | 184 | 5.06e-129 | 361 |
| Msa0856190 | MtrunA17_Chr5g0401071 | 71.226 | 212 | 31 | 1 | 1 | 212 | 1 | 182 | 3.75e-107 | 305 |
| Msa0856190 | MtrunA17_Chr4g0012371 | 65.128 | 195 | 38 | 1 | 20 | 214 | 1 | 165 | 5.19e-88 | 256 |
| Msa0856190 | MtrunA17_Chr7g0270301 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.07e-24 | 95.9 |
| Msa0856190 | MtrunA17_Chr1g0194261 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.14e-24 | 95.9 |
| Msa0856190 | MtrunA17_Chr6g0450081 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.60e-24 | 94.7 |
| Msa0856190 | MtrunA17_Chr5g0413451 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.66e-24 | 94.7 |
| Msa0856190 | MtrunA17_Chr5g0413441 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.66e-24 | 94.7 |
| Msa0856190 | MtrunA17_Chr5g0401761 | 29.082 | 196 | 108 | 2 | 11 | 206 | 9 | 173 | 3.83e-24 | 94.4 |
| Msa0856190 | MtrunA17_Chr4g0072861 | 29.592 | 196 | 107 | 2 | 11 | 206 | 9 | 173 | 1.14e-23 | 93.2 |
| Msa0856190 | MtrunA17_Chr1g0188111 | 31.395 | 172 | 87 | 2 | 14 | 185 | 12 | 152 | 3.92e-22 | 89.0 |
| Msa0856190 | MtrunA17_Chr2g0287721 | 27.700 | 213 | 111 | 3 | 2 | 208 | 7 | 182 | 5.56e-22 | 89.4 |
| Msa0856190 | MtrunA17_Chr4g0039591 | 28.902 | 173 | 92 | 2 | 13 | 185 | 11 | 152 | 5.71e-21 | 86.3 |
| Msa0856190 | MtrunA17_Chr5g0395631 | 26.590 | 173 | 96 | 2 | 13 | 185 | 11 | 152 | 4.30e-19 | 81.3 |
| Msa0856190 | MtrunA17_Chr5g0395641 | 29.143 | 175 | 91 | 3 | 13 | 185 | 11 | 154 | 8.41e-19 | 80.5 |
| Msa0856190 | MtrunA17_Chr8g0373271 | 27.749 | 191 | 104 | 4 | 20 | 208 | 17 | 175 | 3.57e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856190 | AT5G37680.1 | 80.751 | 213 | 11 | 1 | 1 | 213 | 1 | 183 | 1.63e-123 | 347 |
| Msa0856190 | AT5G67560.1 | 69.626 | 214 | 35 | 1 | 1 | 214 | 1 | 184 | 6.95e-106 | 303 |
| Msa0856190 | AT3G49870.1 | 68.692 | 214 | 37 | 1 | 1 | 214 | 1 | 184 | 5.69e-104 | 298 |
| Msa0856190 | AT3G49870.2 | 67.692 | 195 | 33 | 1 | 20 | 214 | 1 | 165 | 2.27e-91 | 265 |
| Msa0856190 | AT5G37680.2 | 75.449 | 167 | 11 | 1 | 48 | 214 | 1 | 137 | 2.46e-87 | 254 |
| Msa0856190 | AT3G49860.1 | 59.898 | 197 | 49 | 1 | 18 | 214 | 10 | 176 | 8.37e-79 | 234 |
| Msa0856190 | AT1G10630.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.57e-24 | 95.9 |
| Msa0856190 | AT1G10630.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.57e-24 | 95.9 |
| Msa0856190 | AT1G23490.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT1G70490.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT1G70490.7 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT1G70490.4 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT1G70490.3 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT1G70490.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT1G70490.6 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT1G70490.5 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0856190 | AT3G62290.3 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0856190 | AT3G62290.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0856190 | AT3G62290.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0856190 | AT2G47170.2 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0856190 | AT2G47170.1 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0856190 | AT2G47170.3 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0856190 | AT5G14670.2 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.87e-24 | 94.7 |
| Msa0856190 | AT5G14670.3 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.87e-24 | 94.7 |
| Msa0856190 | AT5G14670.1 | 31.395 | 172 | 87 | 2 | 14 | 185 | 12 | 152 | 5.60e-24 | 94.4 |
| Msa0856190 | AT2G24765.1 | 27.551 | 196 | 111 | 2 | 11 | 206 | 9 | 173 | 1.03e-21 | 88.6 |
| Msa0856190 | AT3G22950.1 | 30.814 | 172 | 88 | 2 | 14 | 185 | 12 | 152 | 1.32e-21 | 88.2 |
| Msa0856190 | AT3G22950.2 | 30.814 | 172 | 88 | 2 | 14 | 185 | 12 | 152 | 1.32e-21 | 88.2 |
| Msa0856190 | AT5G52210.1 | 28.302 | 212 | 109 | 3 | 2 | 207 | 7 | 181 | 1.38e-21 | 88.6 |
| Msa0856190 | AT5G52210.2 | 28.302 | 212 | 109 | 3 | 2 | 207 | 7 | 181 | 1.38e-21 | 88.6 |
| Msa0856190 | AT5G17060.2 | 28.324 | 173 | 93 | 2 | 13 | 185 | 11 | 152 | 5.98e-21 | 86.7 |
| Msa0856190 | AT5G17060.1 | 28.324 | 173 | 93 | 2 | 13 | 185 | 11 | 152 | 5.98e-21 | 86.7 |
| Msa0856190 | AT3G03120.1 | 27.746 | 173 | 94 | 2 | 13 | 185 | 11 | 152 | 3.57e-20 | 84.7 |
| Msa0856190 | AT2G15310.1 | 25.824 | 182 | 101 | 3 | 17 | 198 | 15 | 162 | 1.30e-18 | 80.9 |
| Msa0856190 | AT2G24765.2 | 28.000 | 150 | 77 | 2 | 11 | 160 | 9 | 127 | 1.04e-16 | 73.9 |
| Msa0856190 | AT3G03120.2 | 27.333 | 150 | 78 | 2 | 13 | 162 | 11 | 129 | 1.20e-16 | 73.9 |
| Msa0856190 | AT2G18390.1 | 27.749 | 191 | 104 | 4 | 20 | 208 | 17 | 175 | 2.18e-15 | 71.6 |
Find 66 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAATTCACTTCGAGTTAT+TGG | 0.140016 | 5_4:-50596723 | None:intergenic |
| AACAAATTGCTTCGTTGATT+TGG | 0.213779 | 5_4:+50597414 | Msa0856190:three_prime_UTR |
| GAAAATCACAAGGCGGTTAT+TGG | 0.233317 | 5_4:+50594790 | Msa0856190:CDS |
| CTTGATATTGTACCAAGTTT+TGG | 0.243962 | 5_4:+50597237 | Msa0856190:three_prime_UTR |
| GGGATTCCTTTGCTTGTTCT+TGG | 0.246105 | 5_4:+50596774 | Msa0856190:CDS |
| ACAATAAAGCTTTGGGATCT+TGG | 0.278062 | 5_4:+50593680 | Msa0856190:CDS |
| AAGCAATTTGTTTAAATTGT+TGG | 0.310341 | 5_4:-50597403 | None:intergenic |
| TTCTTCCTATTCTCAACAAA+TGG | 0.313436 | 5_4:+50592936 | Msa0856190:exon |
| ATGGAAGATTTGACCAAGTT+TGG | 0.317834 | 5_4:-50597188 | None:intergenic |
| TCTGGGATTCTCTTCTCAAT+TGG | 0.329088 | 5_4:+50592962 | Msa0856190:CDS |
| GAGATGGAGCTTTCTCTTGT+AGG | 0.329952 | 5_4:+50593327 | Msa0856190:CDS |
| TTGACCCACAACTAAAATTA+AGG | 0.339003 | 5_4:-50597144 | None:intergenic |
| ATTCTCAACAAATGGGTCTC+TGG | 0.360022 | 5_4:+50592944 | Msa0856190:exon |
| GAGATTCATCCTTTGTTGAT+AGG | 0.386303 | 5_4:+50594748 | Msa0856190:CDS |
| GAAATGTCACAATAAAGCTT+TGG | 0.389200 | 5_4:+50593672 | Msa0856190:CDS |
| AAAATCACAAGGCGGTTATT+GGG | 0.390592 | 5_4:+50594791 | Msa0856190:CDS |
| ACATTCCACAAACCATTCAT+TGG | 0.393712 | 5_4:+50592895 | Msa0856190:five_prime_UTR |
| CTGACCAAACCTTCCTTGAA+TGG | 0.415538 | 5_4:+50596753 | Msa0856190:CDS |
| TTGATCTACCAATGCTTGCT+TGG | 0.418148 | 5_4:-50596826 | None:intergenic |
| AAATGTCACAATAAAGCTTT+GGG | 0.418458 | 5_4:+50593673 | Msa0856190:CDS |
| CTCTTCTCAATTGGCTCCGC+AGG | 0.421148 | 5_4:+50592971 | Msa0856190:CDS |
| GTTGAGAATAGGAAGAAAGA+AGG | 0.434689 | 5_4:-50592930 | None:intergenic |
| AATCCCATTCAAGGAAGGTT+TGG | 0.436571 | 5_4:-50596757 | None:intergenic |
| AGCGACCAATGAATGGTTTG+TGG | 0.443931 | 5_4:-50592900 | None:intergenic |
| CTTGTAGGTCTTCAGAATGC+TGG | 0.454580 | 5_4:+50593342 | Msa0856190:CDS |
| TGACCAAACCTTCCTTGAAT+GGG | 0.458229 | 5_4:+50596754 | Msa0856190:CDS |
| AAGAGGACAAGAATTGGAAA+GGG | 0.461503 | 5_4:+50592731 | None:intergenic |
| GAATGGTTTGTGGAATGTTA+AGG | 0.461935 | 5_4:-50592890 | None:intergenic |
| TTCTCAACAAATGGGTCTCT+GGG | 0.469026 | 5_4:+50592945 | Msa0856190:exon |
| TCTTCCTATTCTCAACAAAT+GGG | 0.470674 | 5_4:+50592937 | Msa0856190:exon |
| GAGACCCATTTGTTGAGAAT+AGG | 0.470753 | 5_4:-50592941 | None:intergenic |
| AAACTTTAGCGACCAATGAA+TGG | 0.477552 | 5_4:-50592907 | None:intergenic |
| AATTGCTTCGTTGATTTGGA+AGG | 0.481442 | 5_4:+50597418 | Msa0856190:three_prime_UTR |
| AACAGAAACCATCCAAAACT+TGG | 0.482714 | 5_4:-50597249 | None:intergenic |
| CATTCAAGGAAGGTTTGGTC+AGG | 0.486407 | 5_4:-50596752 | None:intergenic |
| TTGCTACATGATTTCATGCA+AGG | 0.505231 | 5_4:+50597019 | Msa0856190:CDS |
| AAGCAAAGGAATCCCATTCA+AGG | 0.513568 | 5_4:-50596766 | None:intergenic |
| AGCTCTTTCCAAGCAAGCAT+TGG | 0.513878 | 5_4:+50596818 | Msa0856190:CDS |
| ACATAGATGTGGTCATCGAC+TGG | 0.530688 | 5_4:+50597051 | Msa0856190:CDS |
| TTTGGGATCTTGGTGGTCAA+CGG | 0.548867 | 5_4:+50593690 | Msa0856190:CDS |
| TTGTGGAATGTTAAGGAAGG+AGG | 0.549544 | 5_4:-50592883 | None:intergenic |
| TTGTGTACAGTAACCAAACT+TGG | 0.550375 | 5_4:+50597175 | Msa0856190:three_prime_UTR |
| AAAGAGGACAAGAATTGGAA+AGG | 0.558080 | 5_4:+50592730 | None:intergenic |
| ATAAAGCTTTGGGATCTTGG+TGG | 0.559424 | 5_4:+50593683 | Msa0856190:CDS |
| AATATGCGAAAAGTGACAAA+GGG | 0.561008 | 5_4:+50593650 | Msa0856190:CDS |
| TTGTTTCCAAGAACAAGCAA+AGG | 0.570676 | 5_4:-50596780 | None:intergenic |
| AGTAAGATGTTGATACGATA+CGG | 0.571733 | 5_4:-50592843 | None:intergenic |
| GTCTATGCATTACACTGGAA+AGG | 0.572286 | 5_4:-50597122 | None:intergenic |
| TTTACTCAAGAAACATTGCA+TGG | 0.572723 | 5_4:-50597207 | None:intergenic |
| GTATTATTGTGATCTAAATG+TGG | 0.574237 | 5_4:+50597319 | Msa0856190:three_prime_UTR |
| TTAAGGTCTATGCATTACAC+TGG | 0.574461 | 5_4:-50597127 | None:intergenic |
| AGAGGACAAGAATTGGAAAG+GGG | 0.581381 | 5_4:+50592732 | None:intergenic |
| ATGTGGGAGCGCTACTGTCG+CGG | 0.588919 | 5_4:+50593725 | Msa0856190:CDS |
| AAAGGAATCCCATTCAAGGA+AGG | 0.597544 | 5_4:-50596762 | None:intergenic |
| CAATATGCGAAAAGTGACAA+AGG | 0.599692 | 5_4:+50593649 | Msa0856190:CDS |
| GGTTTGTGGAATGTTAAGGA+AGG | 0.600095 | 5_4:-50592886 | None:intergenic |
| GGGATCTTGGTGGTCAACGG+AGG | 0.604641 | 5_4:+50593693 | Msa0856190:CDS |
| GAGGACAAGAATTGGAAAGG+GGG | 0.616430 | 5_4:+50592733 | None:intergenic |
| ACGGAGGTTTCGAACAATGT+GGG | 0.644507 | 5_4:+50593709 | Msa0856190:CDS |
| GTAGATTCACACACAAAACA+AGG | 0.649203 | 5_4:+50592765 | Msa0856190:five_prime_UTR |
| GGATTCTGTAAACATAGATG+TGG | 0.658596 | 5_4:+50597040 | Msa0856190:CDS |
| AACGGAGGTTTCGAACAATG+TGG | 0.660702 | 5_4:+50593708 | Msa0856190:CDS |
| TTGATGAGACCTATCAACAA+AGG | 0.681666 | 5_4:-50594757 | None:intergenic |
| CCAGTATCAAGAAAATCACA+AGG | 0.685548 | 5_4:+50594780 | Msa0856190:CDS |
| TGAGTCAATTAAAGACAGAG+AGG | 0.706022 | 5_4:+50596992 | Msa0856190:CDS |
| GTATCAAGAAAATCACAAGG+CGG | 0.799782 | 5_4:+50594783 | Msa0856190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTTGTTTAAAAATATT+TGG | + | chr5_4:50597297-50597316 | Msa0856190:three_prime_UTR | 10.0% |
| !! | AAAGAAATAAGAATAAAGAA+AGG | - | chr5_4:50593010-50593029 | None:intergenic | 15.0% |
| !! | AAATTCATACAAAATTACTT+GGG | - | chr5_4:50593250-50593269 | None:intergenic | 15.0% |
| !!! | TAATTTTAACTCATTATTAC+TGG | + | chr5_4:50593419-50593438 | Msa0856190:intron | 15.0% |
| !! | TAACATAGAATTTAAATGTT+GGG | + | chr5_4:50594005-50594024 | Msa0856190:intron | 15.0% |
| !! | AGAAATTATAGATGATTATT+AGG | + | chr5_4:50594347-50594366 | Msa0856190:intron | 15.0% |
| !! | ATCATATGATATATAGTAAC+TGG | - | chr5_4:50593079-50593098 | None:intergenic | 20.0% |
| !! | TTACTCTAATACAAATTTAG+AGG | - | chr5_4:50593164-50593183 | None:intergenic | 20.0% |
| !! | CAAATTCATACAAAATTACT+TGG | - | chr5_4:50593251-50593270 | None:intergenic | 20.0% |
| !!! | CTTATTTTTTAAACAAGAGA+TGG | + | chr5_4:50593311-50593330 | Msa0856190:CDS | 20.0% |
| !! | ACATTTGAATTCAGAATTTA+AGG | + | chr5_4:50593571-50593590 | Msa0856190:intron | 20.0% |
| !! | GTAACATAGAATTTAAATGT+TGG | + | chr5_4:50594004-50594023 | Msa0856190:intron | 20.0% |
| !! | TAAAGATAAAGTTACCTTAT+TGG | - | chr5_4:50595515-50595534 | None:intergenic | 20.0% |
| !!! | TTAAAAAAAAAAAGAGCATC+TGG | - | chr5_4:50595846-50595865 | None:intergenic | 20.0% |
| !!! | GATGCTCTTTTTTTTTTTAA+CGG | + | chr5_4:50595846-50595865 | Msa0856190:intron | 20.0% |
| !!! | ATCTTGATAATAAAAAACAG+TGG | - | chr5_4:50596248-50596267 | None:intergenic | 20.0% |
| !! | TTTATTATCAAGATGTTGAT+TGG | + | chr5_4:50596254-50596273 | Msa0856190:intron | 20.0% |
| !! | GTTCAAACATAGAAATATAA+AGG | + | chr5_4:50596299-50596318 | Msa0856190:intron | 20.0% |
| !!! | AGACTTTTATTGAACAATTT+TGG | + | chr5_4:50596329-50596348 | Msa0856190:intron | 20.0% |
| !!! | TTTTATGAATAAACAGAGAA+AGG | - | chr5_4:50596472-50596491 | None:intergenic | 20.0% |
| !!! | AGTTATGTTTTTATTACGTA+AGG | - | chr5_4:50596507-50596526 | None:intergenic | 20.0% |
| !!! | AAGCAATTTGTTTAAATTGT+TGG | - | chr5_4:50597406-50597425 | None:intergenic | 20.0% |
| ! | AAGAATAAAGAAAGGAAAGT+GGG | - | chr5_4:50593002-50593021 | None:intergenic | 25.0% |
| ! | TAAGAATAAAGAAAGGAAAG+TGG | - | chr5_4:50593003-50593022 | None:intergenic | 25.0% |
| ! | ATGATATATAGTAACTGGAA+TGG | - | chr5_4:50593074-50593093 | None:intergenic | 25.0% |
| ! | ATTAGAGTAAAGATCCAATT+TGG | + | chr5_4:50593174-50593193 | Msa0856190:intron | 25.0% |
| ! | AAAATTGCGAATAACCAAAT+TGG | - | chr5_4:50593191-50593210 | None:intergenic | 25.0% |
| ! | AAAGTAAAGATACTTACAGT+TGG | - | chr5_4:50593545-50593564 | None:intergenic | 25.0% |
| !!! | GAATTTTGCTATTGAACTTT+AGG | + | chr5_4:50593619-50593638 | Msa0856190:intron | 25.0% |
| ! | AAATGTCACAATAAAGCTTT+GGG | + | chr5_4:50593673-50593692 | Msa0856190:CDS | 25.0% |
| !!! | TCCTTTGTCATTTTTTTTGA+AGG | + | chr5_4:50593826-50593845 | Msa0856190:intron | 25.0% |
| ! | ACCTTCAAAAAAAATGACAA+AGG | - | chr5_4:50593830-50593849 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGAAGGTTGTGT+TGG | + | chr5_4:50593835-50593854 | Msa0856190:intron | 25.0% |
| ! | GGAGAAATAAGAAAATACTA+AGG | + | chr5_4:50593973-50593992 | Msa0856190:intron | 25.0% |
| !!! | TAGTTGTTTTATATGCAGTA+GGG | + | chr5_4:50594043-50594062 | Msa0856190:intron | 25.0% |
| ! | CAGCAATGATTGAATTAATA+TGG | + | chr5_4:50594090-50594109 | Msa0856190:intron | 25.0% |
| !!! | ATTAATATGGTGTTGTTCTA+AGG | + | chr5_4:50594103-50594122 | Msa0856190:intron | 25.0% |
| !! | TGTGATAATTGTTTTCTCAT+AGG | + | chr5_4:50594175-50594194 | Msa0856190:intron | 25.0% |
| ! | TTTATTATAAACCCTATAGC+TGG | + | chr5_4:50594279-50594298 | Msa0856190:intron | 25.0% |
| !! | ACCTATTCTAGATCTAAAAT+TGG | + | chr5_4:50594497-50594516 | Msa0856190:intron | 25.0% |
| !!! | TCCAATTTTAGATCTAGAAT+AGG | - | chr5_4:50594501-50594520 | None:intergenic | 25.0% |
| ! | ATTGGACATATTTATACAAG+TGG | - | chr5_4:50594524-50594543 | None:intergenic | 25.0% |
| ! | TACTTGTCATTCTTAGAATT+TGG | - | chr5_4:50594636-50594655 | None:intergenic | 25.0% |
| !! | AAATTCTAAGAATGACAAGT+AGG | + | chr5_4:50594635-50594654 | Msa0856190:intron | 25.0% |
| !! | AATTCTAAGAATGACAAGTA+GGG | + | chr5_4:50594636-50594655 | Msa0856190:intron | 25.0% |
| ! | TGAAGTAGACTCTTATAAAA+CGG | + | chr5_4:50595054-50595073 | Msa0856190:intron | 25.0% |
| ! | AAAGCTAACAATTCTTCAAA+GGG | - | chr5_4:50595104-50595123 | None:intergenic | 25.0% |
| ! | AAAAGCTAACAATTCTTCAA+AGG | - | chr5_4:50595105-50595124 | None:intergenic | 25.0% |
| ! | AGTTCATCCTAAAATGATTT+CGG | + | chr5_4:50595394-50595413 | Msa0856190:intron | 25.0% |
| !! | TTTCGGTTAGTCAATATAAT+TGG | + | chr5_4:50595411-50595430 | Msa0856190:intron | 25.0% |
| !! | TTCGGTTAGTCAATATAATT+GGG | + | chr5_4:50595412-50595431 | Msa0856190:intron | 25.0% |
| ! | AATATAATTGGGTCAAAACA+TGG | + | chr5_4:50595423-50595442 | Msa0856190:intron | 25.0% |
| ! | ATATAATTGGGTCAAAACAT+GGG | + | chr5_4:50595424-50595443 | Msa0856190:intron | 25.0% |
| ! | TAAGGTAACTTTATCTTTAG+TGG | + | chr5_4:50595516-50595535 | Msa0856190:intron | 25.0% |
| ! | TCAACAGTTTGTCTATATAT+TGG | - | chr5_4:50595667-50595686 | None:intergenic | 25.0% |
| ! | TGGTTATAAAAACAAGTATC+AGG | - | chr5_4:50596228-50596247 | None:intergenic | 25.0% |
| !! | CTATAGTAAAATCTAAAGTC+TGG | - | chr5_4:50596364-50596383 | None:intergenic | 25.0% |
| !! | CAGACTTTAGATTTTACTAT+AGG | + | chr5_4:50596362-50596381 | Msa0856190:intron | 25.0% |
| ! | TTACAGAATTATAAGAGTCT+TGG | + | chr5_4:50596394-50596413 | Msa0856190:intron | 25.0% |
| ! | TTATCAGAGAAAAATACAAG+AGG | - | chr5_4:50596551-50596570 | None:intergenic | 25.0% |
| !! | TTTAATTCACTTCGAGTTAT+TGG | - | chr5_4:50596726-50596745 | None:intergenic | 25.0% |
| !!! | ACAGTAATGATGATGATTTT+CGG | - | chr5_4:50596877-50596896 | None:intergenic | 25.0% |
| !!! | ATAGACCTTAATTTTAGTTG+TGG | + | chr5_4:50597139-50597158 | Msa0856190:three_prime_UTR | 25.0% |
| !!! | TAGACCTTAATTTTAGTTGT+GGG | + | chr5_4:50597140-50597159 | Msa0856190:three_prime_UTR | 25.0% |
| ! | GTATTATTGTGATCTAAATG+TGG | + | chr5_4:50597319-50597338 | Msa0856190:three_prime_UTR | 25.0% |
| TAAAAACACAAAACGAACGT+AGG | - | chr5_4:50592818-50592837 | None:intergenic | 30.0% | |
| AGTAAGATGTTGATACGATA+CGG | - | chr5_4:50592846-50592865 | None:intergenic | 30.0% | |
| TTCTTCCTATTCTCAACAAA+TGG | + | chr5_4:50592936-50592955 | Msa0856190:exon | 30.0% | |
| TCTTCCTATTCTCAACAAAT+GGG | + | chr5_4:50592937-50592956 | Msa0856190:exon | 30.0% | |
| TTAGAGGTTTAACAACATCA+AGG | - | chr5_4:50593148-50593167 | None:intergenic | 30.0% | |
| ! | GATTGTGAATTTGTGTGTTT+TGG | + | chr5_4:50593285-50593304 | Msa0856190:intron | 30.0% |
| !!! | TTTGTTTTGTTTGACAGACA+GGG | + | chr5_4:50593498-50593517 | Msa0856190:intron | 30.0% |
| !! | TTTGCTATTGAACTTTAGGT+TGG | + | chr5_4:50593623-50593642 | Msa0856190:intron | 30.0% |
| ! | TTGCTATTGAACTTTAGGTT+GGG | + | chr5_4:50593624-50593643 | Msa0856190:intron | 30.0% |
| AATATGCGAAAAGTGACAAA+GGG | + | chr5_4:50593650-50593669 | Msa0856190:CDS | 30.0% | |
| GAAATGTCACAATAAAGCTT+TGG | + | chr5_4:50593672-50593691 | Msa0856190:CDS | 30.0% | |
| !! | CTAGTTGTTTTATATGCAGT+AGG | + | chr5_4:50594042-50594061 | Msa0856190:intron | 30.0% |
| AAAAGGGCTACTAAGTAAAT+TGG | - | chr5_4:50594397-50594416 | None:intergenic | 30.0% | |
| TCATTCTTAGAATTTGGACT+AGG | - | chr5_4:50594630-50594649 | None:intergenic | 30.0% | |
| !! | ATTGGTTTGATCTTCTCAAA+GGG | + | chr5_4:50595003-50595022 | Msa0856190:intron | 30.0% |
| TAGACTCTTATAAAACGGTA+TGG | + | chr5_4:50595059-50595078 | Msa0856190:intron | 30.0% | |
| AGACTCTTATAAAACGGTAT+GGG | + | chr5_4:50595060-50595079 | Msa0856190:intron | 30.0% | |
| ! | ACGTATTGTTAAGGTAGTTT+TGG | - | chr5_4:50595186-50595205 | None:intergenic | 30.0% |
| GAAATACTCACGTATTGTTA+AGG | - | chr5_4:50595195-50595214 | None:intergenic | 30.0% | |
| !! | TGAACCTTCCATTTTAAAGA+TGG | - | chr5_4:50595233-50595252 | None:intergenic | 30.0% |
| ! | TGACTAACCGAAATCATTTT+AGG | - | chr5_4:50595404-50595423 | None:intergenic | 30.0% |
| AAATTGAGGAACAATTAGTG+TGG | + | chr5_4:50595486-50595505 | Msa0856190:intron | 30.0% | |
| ! | CTTTTCAATGAATGAAGAAG+AGG | + | chr5_4:50595775-50595794 | Msa0856190:intron | 30.0% |
| TCCTCATTCTTTCAAACATT+AGG | + | chr5_4:50595811-50595830 | Msa0856190:intron | 30.0% | |
| CCTCATTCTTTCAAACATTA+GGG | + | chr5_4:50595812-50595831 | Msa0856190:intron | 30.0% | |
| TAAAAACAAGTATCAGGAAG+TGG | - | chr5_4:50596222-50596241 | None:intergenic | 30.0% | |
| !!! | TTGAACAATTTTGGTTACTG+AGG | + | chr5_4:50596338-50596357 | Msa0856190:intron | 30.0% |
| AGTTATTGTATGGTTATGGT+AGG | - | chr5_4:50596426-50596445 | None:intergenic | 30.0% | |
| GGATAGTTATTGTATGGTTA+TGG | - | chr5_4:50596430-50596449 | None:intergenic | 30.0% | |
| TGAATAAACAGAGAAAGGAA+AGG | - | chr5_4:50596467-50596486 | None:intergenic | 30.0% | |
| TTAACACATGCTTCATATTG+TGG | + | chr5_4:50596577-50596596 | Msa0856190:intron | 30.0% | |
| ! | GTTTGTTCTTTCGAGTAATT+AGG | + | chr5_4:50596607-50596626 | Msa0856190:intron | 30.0% |
| TAATTAGGAGTTGCATTTCT+TGG | + | chr5_4:50596622-50596641 | Msa0856190:intron | 30.0% | |
| AGTTGTGTTTGCTTTAATCA+TGG | + | chr5_4:50596654-50596673 | Msa0856190:intron | 30.0% | |
| TTGACCCACAACTAAAATTA+AGG | - | chr5_4:50597147-50597166 | None:intergenic | 30.0% | |
| TTTACTCAAGAAACATTGCA+TGG | - | chr5_4:50597210-50597229 | None:intergenic | 30.0% | |
| ! | CTTGATATTGTACCAAGTTT+TGG | + | chr5_4:50597237-50597256 | Msa0856190:three_prime_UTR | 30.0% |
| !!! | ATATTGTACCAAGTTTTGGA+TGG | + | chr5_4:50597241-50597260 | Msa0856190:three_prime_UTR | 30.0% |
| TGGAAAAAAGATCAGTATTG+AGG | + | chr5_4:50597339-50597358 | Msa0856190:three_prime_UTR | 30.0% | |
| ! | ATTGTTGGCACATTTTCATA+TGG | - | chr5_4:50597391-50597410 | None:intergenic | 30.0% |
| ! | AACAAATTGCTTCGTTGATT+TGG | + | chr5_4:50597414-50597433 | Msa0856190:three_prime_UTR | 30.0% |
| GTAGATTCACACACAAAACA+AGG | + | chr5_4:50592765-50592784 | Msa0856190:five_prime_UTR | 35.0% | |
| ! | GAATGGTTTGTGGAATGTTA+AGG | - | chr5_4:50592893-50592912 | None:intergenic | 35.0% |
| ACATTCCACAAACCATTCAT+TGG | + | chr5_4:50592895-50592914 | Msa0856190:five_prime_UTR | 35.0% | |
| AAACTTTAGCGACCAATGAA+TGG | - | chr5_4:50592910-50592929 | None:intergenic | 35.0% | |
| GTTGAGAATAGGAAGAAAGA+AGG | - | chr5_4:50592933-50592952 | None:intergenic | 35.0% | |
| GTGACTATGGTTTCATAGTT+TGG | + | chr5_4:50593462-50593481 | Msa0856190:intron | 35.0% | |
| !!! | GTTTGTTTTGTTTGACAGAC+AGG | + | chr5_4:50593497-50593516 | Msa0856190:intron | 35.0% |
| !!! | TTGTTTTGTTTGACAGACAG+GGG | + | chr5_4:50593499-50593518 | Msa0856190:intron | 35.0% |
| CAATATGCGAAAAGTGACAA+AGG | + | chr5_4:50593649-50593668 | Msa0856190:CDS | 35.0% | |
| !! | ACAATAAAGCTTTGGGATCT+TGG | + | chr5_4:50593680-50593699 | Msa0856190:CDS | 35.0% |
| TTCTGTTAGAACCCAAAGTT+AGG | + | chr5_4:50593902-50593921 | Msa0856190:intron | 35.0% | |
| CAGAAAACAAGCCTAAAATG+TGG | + | chr5_4:50593937-50593956 | Msa0856190:intron | 35.0% | |
| !! | AATATGGTGTTGTTCTAAGG+AGG | + | chr5_4:50594106-50594125 | Msa0856190:intron | 35.0% |
| ! | GGAGGACTTATGTAAGTTTT+TGG | + | chr5_4:50594124-50594143 | Msa0856190:intron | 35.0% |
| ! | TTGGATTGGATCACAAAAGT+CGG | - | chr5_4:50594306-50594325 | None:intergenic | 35.0% |
| ! | TTTTGTGATCCAATCCAAGA+GGG | + | chr5_4:50594308-50594327 | Msa0856190:intron | 35.0% |
| ! | GCTATATTTCAAGTCGATGT+GGG | - | chr5_4:50594375-50594394 | None:intergenic | 35.0% |
| ! | AGATTAGCCAAGGCTTAAAA+GGG | - | chr5_4:50594413-50594432 | None:intergenic | 35.0% |
| ! | AAGATTAGCCAAGGCTTAAA+AGG | - | chr5_4:50594414-50594433 | None:intergenic | 35.0% |
| AATAGGTTGCGATACCATAT+TGG | - | chr5_4:50594484-50594503 | None:intergenic | 35.0% | |
| TATGTCCAATACTAGATGTG+AGG | + | chr5_4:50594534-50594553 | Msa0856190:intron | 35.0% | |
| ATGTCCAATACTAGATGTGA+GGG | + | chr5_4:50594535-50594554 | Msa0856190:intron | 35.0% | |
| !!! | AATGTGACTGAACTAGCTTT+TGG | + | chr5_4:50594597-50594616 | Msa0856190:intron | 35.0% |
| !!! | ATGTGACTGAACTAGCTTTT+GGG | + | chr5_4:50594598-50594617 | Msa0856190:intron | 35.0% |
| ATCTGTTGGAAGAATTCAAG+AGG | + | chr5_4:50594662-50594681 | Msa0856190:intron | 35.0% | |
| TCTGTTGGAAGAATTCAAGA+GGG | + | chr5_4:50594663-50594682 | Msa0856190:intron | 35.0% | |
| GAGATTCATCCTTTGTTGAT+AGG | + | chr5_4:50594748-50594767 | Msa0856190:CDS | 35.0% | |
| TTGATGAGACCTATCAACAA+AGG | - | chr5_4:50594760-50594779 | None:intergenic | 35.0% | |
| ! | CCTTGTGATTTTCTTGATAC+TGG | - | chr5_4:50594783-50594802 | None:intergenic | 35.0% |
| CCAGTATCAAGAAAATCACA+AGG | + | chr5_4:50594780-50594799 | Msa0856190:CDS | 35.0% | |
| GTATCAAGAAAATCACAAGG+CGG | + | chr5_4:50594783-50594802 | Msa0856190:CDS | 35.0% | |
| AAAATCACAAGGCGGTTATT+GGG | + | chr5_4:50594791-50594810 | Msa0856190:CDS | 35.0% | |
| CTAACTGTTCTGTCAAACAT+AGG | - | chr5_4:50594852-50594871 | None:intergenic | 35.0% | |
| AACACATATCATGGATCACT+AGG | + | chr5_4:50594896-50594915 | Msa0856190:intron | 35.0% | |
| AAACACAACTGAAGAAGTCA+AGG | + | chr5_4:50594942-50594961 | Msa0856190:intron | 35.0% | |
| AATTAGCTGGCCATATATGA+GGG | + | chr5_4:50594969-50594988 | Msa0856190:intron | 35.0% | |
| !! | CATTGGTTTGATCTTCTCAA+AGG | + | chr5_4:50595002-50595021 | Msa0856190:intron | 35.0% |
| TACTTCAACTTATCCCAAGT+CGG | - | chr5_4:50595041-50595060 | None:intergenic | 35.0% | |
| GACTCTTATAAAACGGTATG+GGG | + | chr5_4:50595061-50595080 | Msa0856190:intron | 35.0% | |
| ACTCTTATAAAACGGTATGG+GGG | + | chr5_4:50595062-50595081 | Msa0856190:intron | 35.0% | |
| !!! | TTGTTAGCTTTTCGACTGTT+CGG | + | chr5_4:50595113-50595132 | Msa0856190:intron | 35.0% |
| GGTACTATTGAGCAATATAG+AGG | + | chr5_4:50595134-50595153 | Msa0856190:intron | 35.0% | |
| !!! | TTAAGGTAGTTTTGGTACCT+TGG | - | chr5_4:50595178-50595197 | None:intergenic | 35.0% |
| ATACGTGAGTATTTCATGAG+TGG | + | chr5_4:50595200-50595219 | Msa0856190:intron | 35.0% | |
| ! | GTCTTCAGCCATCTTTAAAA+TGG | + | chr5_4:50595222-50595241 | Msa0856190:intron | 35.0% |
| !! | TCAGCCATCTTTAAAATGGA+AGG | + | chr5_4:50595226-50595245 | Msa0856190:intron | 35.0% |
| ! | ATCAACTGCACTCTATTTTG+AGG | - | chr5_4:50595266-50595285 | None:intergenic | 35.0% |
| TAGAGTGCAGTTGATTAGAA+TGG | + | chr5_4:50595271-50595290 | Msa0856190:intron | 35.0% | |
| GTTGATTAGAATGGCTTAGA+TGG | + | chr5_4:50595280-50595299 | Msa0856190:intron | 35.0% | |
| ATTAGAATGGCTTAGATGGA+AGG | + | chr5_4:50595284-50595303 | Msa0856190:intron | 35.0% | |
| ! | TTTAGGATGAACTGAACCTT+AGG | - | chr5_4:50595387-50595406 | None:intergenic | 35.0% |
| CTTGCTAGAACTTGAATCTA+TGG | - | chr5_4:50595452-50595471 | None:intergenic | 35.0% | |
| ACACGTGATCATACAAATTG+AGG | + | chr5_4:50595472-50595491 | Msa0856190:intron | 35.0% | |
| AATTAGTGTGGCTTCCAATA+AGG | + | chr5_4:50595498-50595517 | Msa0856190:intron | 35.0% | |
| TATCTTTAGTGGCGTTAACA+AGG | + | chr5_4:50595527-50595546 | Msa0856190:intron | 35.0% | |
| CGTTAACAAGGAAATGAGAA+GGG | + | chr5_4:50595539-50595558 | Msa0856190:intron | 35.0% | |
| GTTAACAAGGAAATGAGAAG+GGG | + | chr5_4:50595540-50595559 | Msa0856190:intron | 35.0% | |
| TTAACAAGGAAATGAGAAGG+GGG | + | chr5_4:50595541-50595560 | Msa0856190:intron | 35.0% | |
| AACTTAGAACGTAGAGCTAA+AGG | + | chr5_4:50595602-50595621 | Msa0856190:intron | 35.0% | |
| ACTTAGAACGTAGAGCTAAA+GGG | + | chr5_4:50595603-50595622 | Msa0856190:intron | 35.0% | |
| ACTGTTGATGTTGTTAGTGT+TGG | + | chr5_4:50595679-50595698 | Msa0856190:intron | 35.0% | |
| CCCTAATGTTTGAAAGAATG+AGG | - | chr5_4:50595815-50595834 | None:intergenic | 35.0% | |
| ! | TGTAACTTTGCTCCATTTTC+GGG | - | chr5_4:50595913-50595932 | None:intergenic | 35.0% |
| ! | CTGTAACTTTGCTCCATTTT+CGG | - | chr5_4:50595914-50595933 | None:intergenic | 35.0% |
| !! | TTGTCTTGATTTGGTGACTT+TGG | - | chr5_4:50596032-50596051 | None:intergenic | 35.0% |
| TTATGGCTCTTGTCTTGATT+TGG | - | chr5_4:50596041-50596060 | None:intergenic | 35.0% | |
| GGTTCTTTCATAGTCTGTTA+TGG | - | chr5_4:50596058-50596077 | None:intergenic | 35.0% | |
| ATGAAAGAACCGAAACGTTA+AGG | + | chr5_4:50596067-50596086 | Msa0856190:intron | 35.0% | |
| ! | GTGATGGGATAGTTATTGTA+TGG | - | chr5_4:50596436-50596455 | None:intergenic | 35.0% |
| ! | AGGAGAGTACAGAAATCAAT+TGG | - | chr5_4:50596531-50596550 | None:intergenic | 35.0% |
| TTAATCATGGATGCAATTGC+AGG | + | chr5_4:50596667-50596686 | Msa0856190:intron | 35.0% | |
| TTGTTTCCAAGAACAAGCAA+AGG | - | chr5_4:50596783-50596802 | None:intergenic | 35.0% | |
| TGAGTCAATTAAAGACAGAG+AGG | + | chr5_4:50596992-50597011 | Msa0856190:CDS | 35.0% | |
| TTGCTACATGATTTCATGCA+AGG | + | chr5_4:50597019-50597038 | Msa0856190:CDS | 35.0% | |
| GGATTCTGTAAACATAGATG+TGG | + | chr5_4:50597040-50597059 | Msa0856190:CDS | 35.0% | |
| TTAAGGTCTATGCATTACAC+TGG | - | chr5_4:50597130-50597149 | None:intergenic | 35.0% | |
| TTGTGTACAGTAACCAAACT+TGG | + | chr5_4:50597175-50597194 | Msa0856190:three_prime_UTR | 35.0% | |
| ATGGAAGATTTGACCAAGTT+TGG | - | chr5_4:50597191-50597210 | None:intergenic | 35.0% | |
| AACAGAAACCATCCAAAACT+TGG | - | chr5_4:50597252-50597271 | None:intergenic | 35.0% | |
| TTGTGGAATGTTAAGGAAGG+AGG | - | chr5_4:50592886-50592905 | None:intergenic | 40.0% | |
| GGTTTGTGGAATGTTAAGGA+AGG | - | chr5_4:50592889-50592908 | None:intergenic | 40.0% | |
| ! | GAGACCCATTTGTTGAGAAT+AGG | - | chr5_4:50592944-50592963 | None:intergenic | 40.0% |
| ATTCTCAACAAATGGGTCTC+TGG | + | chr5_4:50592944-50592963 | Msa0856190:exon | 40.0% | |
| TTCTCAACAAATGGGTCTCT+GGG | + | chr5_4:50592945-50592964 | Msa0856190:exon | 40.0% | |
| ! | TCTGGGATTCTCTTCTCAAT+TGG | + | chr5_4:50592962-50592981 | Msa0856190:CDS | 40.0% |
| GTTGCTTGTTCTTGTGACTA+TGG | + | chr5_4:50593449-50593468 | Msa0856190:intron | 40.0% | |
| !!! | TGTTTTGTTTGACAGACAGG+GGG | + | chr5_4:50593500-50593519 | Msa0856190:intron | 40.0% |
| !! | ATAAAGCTTTGGGATCTTGG+TGG | + | chr5_4:50593683-50593702 | Msa0856190:CDS | 40.0% |
| ATGATCCAGGACCTAACTTT+GGG | - | chr5_4:50593916-50593935 | None:intergenic | 40.0% | |
| ! | GAGTACACAAGCCACATTTT+AGG | - | chr5_4:50593951-50593970 | None:intergenic | 40.0% |
| ! | AAATGTGGCTTGTGTACTCT+AGG | + | chr5_4:50593952-50593971 | Msa0856190:intron | 40.0% |
| ! | GTTTTCTCATAGGAGAGTCT+CGG | + | chr5_4:50594185-50594204 | Msa0856190:intron | 40.0% |
| !! | GAACTTCCCTATTAGCCTTA+AGG | - | chr5_4:50594211-50594230 | None:intergenic | 40.0% |
| AAGTTCATCTACCATATCCG+CGG | + | chr5_4:50594225-50594244 | Msa0856190:intron | 40.0% | |
| ! | CTTTTGTGATCCAATCCAAG+AGG | + | chr5_4:50594307-50594326 | Msa0856190:intron | 40.0% |
| TTTGTGATCCAATCCAAGAG+GGG | + | chr5_4:50594309-50594328 | Msa0856190:intron | 40.0% | |
| ! | GGCTATATTTCAAGTCGATG+TGG | - | chr5_4:50594376-50594395 | None:intergenic | 40.0% |
| ! | TTAGTAGCCCTTTTAAGCCT+TGG | + | chr5_4:50594403-50594422 | Msa0856190:intron | 40.0% |
| AATCCCATAAGCTACCTCAA+GGG | - | chr5_4:50594440-50594459 | None:intergenic | 40.0% | |
| TAATCCCATAAGCTACCTCA+AGG | - | chr5_4:50594441-50594460 | None:intergenic | 40.0% | |
| GCGATACCATATTGGAGTAT+GGG | - | chr5_4:50594476-50594495 | None:intergenic | 40.0% | |
| TGCGATACCATATTGGAGTA+TGG | - | chr5_4:50594477-50594496 | None:intergenic | 40.0% | |
| TGTCCAATACTAGATGTGAG+GGG | + | chr5_4:50594536-50594555 | Msa0856190:intron | 40.0% | |
| !!! | TGTGACTGAACTAGCTTTTG+GGG | + | chr5_4:50594599-50594618 | Msa0856190:intron | 40.0% |
| AGAATTCAAGAGGGCAAACA+TGG | + | chr5_4:50594672-50594691 | Msa0856190:intron | 40.0% | |
| GCATATGTGTCACAATACTG+AGG | + | chr5_4:50594698-50594717 | Msa0856190:intron | 40.0% | |
| TCACAATACTGAGGATTGCA+GGG | + | chr5_4:50594707-50594726 | Msa0856190:intron | 40.0% | |
| GAAAATCACAAGGCGGTTAT+TGG | + | chr5_4:50594790-50594809 | Msa0856190:CDS | 40.0% | |
| AGTCCAAAAAACTCGTCTGA+CGG | + | chr5_4:50594870-50594889 | Msa0856190:intron | 40.0% | |
| TGACGGAACAACACATATCA+TGG | + | chr5_4:50594887-50594906 | Msa0856190:intron | 40.0% | |
| AAGTCAAGGTGAGAATTAGC+TGG | + | chr5_4:50594956-50594975 | Msa0856190:intron | 40.0% | |
| GAATTAGCTGGCCATATATG+AGG | + | chr5_4:50594968-50594987 | Msa0856190:intron | 40.0% | |
| !! | ATCCCAAGTCGGTTTTTCTT+CGG | - | chr5_4:50595030-50595049 | None:intergenic | 40.0% |
| TTATAAAACGGTATGGGGGA+TGG | + | chr5_4:50595066-50595085 | Msa0856190:intron | 40.0% | |
| TATAAAACGGTATGGGGGAT+GGG | + | chr5_4:50595067-50595086 | Msa0856190:intron | 40.0% | |
| !!! | TTTTGTGTTGATTCCCTCCA+AGG | + | chr5_4:50595158-50595177 | Msa0856190:intron | 40.0% |
| AGCCTCAAGAGATGGTTATT+GGG | + | chr5_4:50595319-50595338 | Msa0856190:intron | 40.0% | |
| TTCCCAATAACCATCTCTTG+AGG | - | chr5_4:50595324-50595343 | None:intergenic | 40.0% | |
| AGATGGTTATTGGGAAACAG+TGG | + | chr5_4:50595328-50595347 | Msa0856190:intron | 40.0% | |
| !!! | GAGGCAGCTTGTTAAGTTTT+CGG | + | chr5_4:50595356-50595375 | Msa0856190:intron | 40.0% |
| ! | TAAGTTTTCGGCCTAACCTA+AGG | + | chr5_4:50595368-50595387 | Msa0856190:intron | 40.0% |
| GATGAACTGAACCTTAGGTT+AGG | - | chr5_4:50595382-50595401 | None:intergenic | 40.0% | |
| GCGTTAACAAGGAAATGAGA+AGG | + | chr5_4:50595538-50595557 | Msa0856190:intron | 40.0% | |
| GTGGTGAAAAATTCCATTCG+CGG | + | chr5_4:50595639-50595658 | Msa0856190:intron | 40.0% | |
| ! | GTTGATGTTGTTAGTGTTGG+AGG | + | chr5_4:50595682-50595701 | Msa0856190:intron | 40.0% |
| !!! | GACTTTGGTCTTGGTGTTTT+GGG | - | chr5_4:50596017-50596036 | None:intergenic | 40.0% |
| !!! | TGACTTTGGTCTTGGTGTTT+TGG | - | chr5_4:50596018-50596037 | None:intergenic | 40.0% |
| !! | TGATTTGGTGACTTTGGTCT+TGG | - | chr5_4:50596026-50596045 | None:intergenic | 40.0% |
| AGACAAAGGCCTTAACGTTT+CGG | - | chr5_4:50596079-50596098 | None:intergenic | 40.0% | |
| ACCGCCTGTTTCAAGAATTT+GGG | + | chr5_4:50596167-50596186 | Msa0856190:intron | 40.0% | |
| ACCCAAATTCTTGAAACAGG+CGG | - | chr5_4:50596171-50596190 | None:intergenic | 40.0% | |
| GGTACCCAAATTCTTGAAAC+AGG | - | chr5_4:50596174-50596193 | None:intergenic | 40.0% | |
| TTCAAGAATTTGGGTACCTC+AGG | + | chr5_4:50596176-50596195 | Msa0856190:intron | 40.0% | |
| ! | ATCAAGATGTTGATTGGTCG+TGG | + | chr5_4:50596260-50596279 | Msa0856190:intron | 40.0% |
| AGAGAAAGGAAAGGAGAAAG+GGG | - | chr5_4:50596458-50596477 | None:intergenic | 40.0% | |
| CAGAGAAAGGAAAGGAGAAA+GGG | - | chr5_4:50596459-50596478 | None:intergenic | 40.0% | |
| ACAGAGAAAGGAAAGGAGAA+AGG | - | chr5_4:50596460-50596479 | None:intergenic | 40.0% | |
| TGACCAAACCTTCCTTGAAT+GGG | + | chr5_4:50596754-50596773 | Msa0856190:CDS | 40.0% | |
| AATCCCATTCAAGGAAGGTT+TGG | - | chr5_4:50596760-50596779 | None:intergenic | 40.0% | |
| AAAGGAATCCCATTCAAGGA+AGG | - | chr5_4:50596765-50596784 | None:intergenic | 40.0% | |
| AAGCAAAGGAATCCCATTCA+AGG | - | chr5_4:50596769-50596788 | None:intergenic | 40.0% | |
| TTGATCTACCAATGCTTGCT+TGG | - | chr5_4:50596829-50596848 | None:intergenic | 40.0% | |
| AACCTTTGATTGTTCGACGT+TGG | + | chr5_4:50596953-50596972 | Msa0856190:intron | 40.0% | |
| AACCAACGTCGAACAATCAA+AGG | - | chr5_4:50596958-50596977 | None:intergenic | 40.0% | |
| GTCTATGCATTACACTGGAA+AGG | - | chr5_4:50597125-50597144 | None:intergenic | 40.0% | |
| AGCGACCAATGAATGGTTTG+TGG | - | chr5_4:50592903-50592922 | None:intergenic | 45.0% | |
| !! | AGGAAAGTGGGTTTTACCTG+CGG | - | chr5_4:50592990-50593009 | None:intergenic | 45.0% |
| GAGATGGAGCTTTCTCTTGT+AGG | + | chr5_4:50593327-50593346 | Msa0856190:CDS | 45.0% | |
| CTTGTAGGTCTTCAGAATGC+TGG | + | chr5_4:50593342-50593361 | Msa0856190:CDS | 45.0% | |
| ! | TTTGGGATCTTGGTGGTCAA+CGG | + | chr5_4:50593690-50593709 | Msa0856190:CDS | 45.0% |
| AACGGAGGTTTCGAACAATG+TGG | + | chr5_4:50593708-50593727 | Msa0856190:CDS | 45.0% | |
| ACGGAGGTTTCGAACAATGT+GGG | + | chr5_4:50593709-50593728 | Msa0856190:CDS | 45.0% | |
| TAGAACCCAAAGTTAGGTCC+TGG | + | chr5_4:50593908-50593927 | Msa0856190:intron | 45.0% | |
| CATGATCCAGGACCTAACTT+TGG | - | chr5_4:50593917-50593936 | None:intergenic | 45.0% | |
| !! | GCTTGTTTTCTGCATGATCC+AGG | - | chr5_4:50593929-50593948 | None:intergenic | 45.0% |
| TCTCGGCCTTAAGGCTAATA+GGG | + | chr5_4:50594202-50594221 | Msa0856190:intron | 45.0% | |
| AGTTCATCTACCATATCCGC+GGG | + | chr5_4:50594226-50594245 | Msa0856190:intron | 45.0% | |
| ! | ACAAAGAGTACATCAACCCG+CGG | - | chr5_4:50594245-50594264 | None:intergenic | 45.0% |
| CAAAAGTCGGACCAGCTATA+GGG | - | chr5_4:50594293-50594312 | None:intergenic | 45.0% | |
| ACAAAAGTCGGACCAGCTAT+AGG | - | chr5_4:50594294-50594313 | None:intergenic | 45.0% | |
| ATCCCATAAGCTACCTCAAG+GGG | - | chr5_4:50594439-50594458 | None:intergenic | 45.0% | |
| ! | CCATATTGGAGTATGGGCTA+GGG | - | chr5_4:50594470-50594489 | None:intergenic | 45.0% |
| ACCATATTGGAGTATGGGCT+AGG | - | chr5_4:50594471-50594490 | None:intergenic | 45.0% | |
| GTCCAATACTAGATGTGAGG+GGG | + | chr5_4:50594537-50594556 | Msa0856190:intron | 45.0% | |
| TCCAATACTAGATGTGAGGG+GGG | + | chr5_4:50594538-50594557 | Msa0856190:intron | 45.0% | |
| ! | GACAAGTAGGGTTGATCTGT+TGG | + | chr5_4:50594648-50594667 | Msa0856190:intron | 45.0% |
| GTCACAATACTGAGGATTGC+AGG | + | chr5_4:50594706-50594725 | Msa0856190:intron | 45.0% | |
| !!! | GTTCCGTCAGACGAGTTTTT+TGG | - | chr5_4:50594876-50594895 | None:intergenic | 45.0% |
| AGCTGTTCCTCCCTCATATA+TGG | - | chr5_4:50594982-50595001 | None:intergenic | 45.0% | |
| ! | GACCGAAGAAAAACCGACTT+GGG | + | chr5_4:50595025-50595044 | Msa0856190:intron | 45.0% |
| !!! | GGTAGTTTTGGTACCTTGGA+GGG | - | chr5_4:50595174-50595193 | None:intergenic | 45.0% |
| !!! | AGGTAGTTTTGGTACCTTGG+AGG | - | chr5_4:50595175-50595194 | None:intergenic | 45.0% |
| CAGCCTCAAGAGATGGTTAT+TGG | + | chr5_4:50595318-50595337 | Msa0856190:intron | 45.0% | |
| TGGTTATTGGGAAACAGTGG+TGG | + | chr5_4:50595331-50595350 | Msa0856190:intron | 45.0% | |
| TTATTGGGAAACAGTGGTGG+TGG | + | chr5_4:50595334-50595353 | Msa0856190:intron | 45.0% | |
| AAAGGGTTGTGCTTCAAGTG+TGG | + | chr5_4:50595620-50595639 | Msa0856190:intron | 45.0% | |
| !! | CTATATATTGGTGCCGCGAA+TGG | - | chr5_4:50595655-50595674 | None:intergenic | 45.0% |
| GGTTCATCTTGTGCTCGATT+TGG | - | chr5_4:50595892-50595911 | None:intergenic | 45.0% | |
| GCACAAGATGAACCCGAAAA+TGG | + | chr5_4:50595898-50595917 | Msa0856190:intron | 45.0% | |
| ACAACAAAACACCCAGCCAA+AGG | + | chr5_4:50595940-50595959 | Msa0856190:intron | 45.0% | |
| !!! | GTCTTGGTGTTTTGGGATCT+TGG | - | chr5_4:50596010-50596029 | None:intergenic | 45.0% |
| ATTCTTGAAACAGGCGGTGT+AGG | - | chr5_4:50596165-50596184 | None:intergenic | 45.0% | |
| CACCGCCTGTTTCAAGAATT+TGG | + | chr5_4:50596166-50596185 | Msa0856190:intron | 45.0% | |
| TACCTCAGGTCGTAATAGCT+TGG | + | chr5_4:50596190-50596209 | Msa0856190:intron | 45.0% | |
| ATCCAAGCTATTACGACCTG+AGG | - | chr5_4:50596195-50596214 | None:intergenic | 45.0% | |
| TCGTGGATGCTGATAGAAAC+TGG | + | chr5_4:50596277-50596296 | Msa0856190:intron | 45.0% | |
| ! | CATTCAAGGAAGGTTTGGTC+AGG | - | chr5_4:50596755-50596774 | None:intergenic | 45.0% |
| CTGACCAAACCTTCCTTGAA+TGG | + | chr5_4:50596753-50596772 | Msa0856190:CDS | 45.0% | |
| GGGATTCCTTTGCTTGTTCT+TGG | + | chr5_4:50596774-50596793 | Msa0856190:CDS | 45.0% | |
| AGCTCTTTCCAAGCAAGCAT+TGG | + | chr5_4:50596818-50596837 | Msa0856190:CDS | 45.0% | |
| ! | TCGACGTTGGTTGATTTCAG+AGG | + | chr5_4:50596966-50596985 | Msa0856190:intron | 45.0% |
| ACATAGATGTGGTCATCGAC+TGG | + | chr5_4:50597051-50597070 | Msa0856190:CDS | 45.0% | |
| ATAGGAGAGTCTCGGCCTTA+AGG | + | chr5_4:50594193-50594212 | Msa0856190:intron | 50.0% | |
| GTCTCGGCCTTAAGGCTAAT+AGG | + | chr5_4:50594201-50594220 | Msa0856190:intron | 50.0% | |
| AGTACATCAACCCGCGGATA+TGG | - | chr5_4:50594239-50594258 | None:intergenic | 50.0% | |
| !! | GCGGGTTGATGTACTCTTTG+TGG | + | chr5_4:50594244-50594263 | Msa0856190:intron | 50.0% |
| TGATCCAATCCAAGAGGGGA+GGG | + | chr5_4:50594313-50594332 | Msa0856190:intron | 50.0% | |
| AATTCACAACCCTCCCCTCT+TGG | - | chr5_4:50594325-50594344 | None:intergenic | 50.0% | |
| ! | CAAGGGGTGAAGATTAGCCA+AGG | - | chr5_4:50594423-50594442 | None:intergenic | 50.0% |
| TGGCTAATCTTCACCCCTTG+AGG | + | chr5_4:50594423-50594442 | Msa0856190:intron | 50.0% | |
| TCACCCCTTGAGGTAGCTTA+TGG | + | chr5_4:50594433-50594452 | Msa0856190:intron | 50.0% | |
| CACCCCTTGAGGTAGCTTAT+GGG | + | chr5_4:50594434-50594453 | Msa0856190:intron | 50.0% | |
| CCCTAGCCCATACTCCAATA+TGG | + | chr5_4:50594467-50594486 | Msa0856190:intron | 50.0% | |
| ACCCCCCTCACATCTAGTAT+TGG | - | chr5_4:50594542-50594561 | None:intergenic | 50.0% | |
| AATACTAGATGTGAGGGGGG+TGG | + | chr5_4:50594541-50594560 | Msa0856190:intron | 50.0% | |
| TAGCTGGCCATATATGAGGG+AGG | + | chr5_4:50594972-50594991 | Msa0856190:intron | 50.0% | |
| ATGAGGGAGGAACAGCTCAT+TGG | + | chr5_4:50594985-50595004 | Msa0856190:intron | 50.0% | |
| GGACCGAAGAAAAACCGACT+TGG | + | chr5_4:50595024-50595043 | Msa0856190:intron | 50.0% | |
| CAAAGAAGCCATAGCGTCAC+AGG | - | chr5_4:50596112-50596131 | None:intergenic | 50.0% | |
| CTGTGACGCTATGGCTTCTT+TGG | + | chr5_4:50596110-50596129 | Msa0856190:intron | 50.0% | |
| GGAAAGGAGAAAGGGGTGAT+GGG | - | chr5_4:50596451-50596470 | None:intergenic | 50.0% | |
| AGGAAAGGAGAAAGGGGTGA+TGG | - | chr5_4:50596452-50596471 | None:intergenic | 50.0% | |
| ! | CTCTTCTCAATTGGCTCCGC+AGG | + | chr5_4:50592971-50592990 | Msa0856190:CDS | 55.0% |
| ACAGACAGGGGGATACAGTG+AGG | + | chr5_4:50593511-50593530 | Msa0856190:intron | 55.0% | |
| GTGATCCAATCCAAGAGGGG+AGG | + | chr5_4:50594312-50594331 | Msa0856190:intron | 55.0% | |
| ACAACCCTCCCCTCTTGGAT+TGG | - | chr5_4:50594320-50594339 | None:intergenic | 55.0% | |
| CACTCTGCAGCCTCAAGAGA+TGG | + | chr5_4:50595311-50595330 | Msa0856190:intron | 55.0% | |
| !! | TTGGGAAACAGTGGTGGTGG+AGG | + | chr5_4:50595337-50595356 | Msa0856190:intron | 55.0% |
| TGACTCGTGACGTGAGCCTT+TGG | - | chr5_4:50595959-50595978 | None:intergenic | 55.0% | |
| AGAAGCCATAGCGTCACAGG+CGG | - | chr5_4:50596109-50596128 | None:intergenic | 55.0% | |
| AAACAGGCGGTGTAGGTGGT+AGG | - | chr5_4:50596158-50596177 | None:intergenic | 55.0% | |
| CTTGAAACAGGCGGTGTAGG+TGG | - | chr5_4:50596162-50596181 | None:intergenic | 55.0% | |
| ! | GGGATCTTGGTGGTCAACGG+AGG | + | chr5_4:50593693-50593712 | Msa0856190:CDS | 60.0% |
| !! | ATGTGGGAGCGCTACTGTCG+CGG | + | chr5_4:50593725-50593744 | Msa0856190:CDS | 60.0% |
| CGTGACGTGAGCCTTTGGCT+GGG | - | chr5_4:50595954-50595973 | None:intergenic | 60.0% | |
| TCGTGACGTGAGCCTTTGGC+TGG | - | chr5_4:50595955-50595974 | None:intergenic | 60.0% | |
| CAGGCGGAGGTCAGAGACAA+AGG | - | chr5_4:50596093-50596112 | None:intergenic | 60.0% | |
| !! | GTGTAGGTGGTAGGCGTCGA+AGG | - | chr5_4:50596149-50596168 | None:intergenic | 60.0% |
| GACCTCCGCCTGTGACGCTA+TGG | + | chr5_4:50596101-50596120 | Msa0856190:intron | 65.0% | |
| AGCCATAGCGTCACAGGCGG+AGG | - | chr5_4:50596106-50596125 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 50592744 | 50597437 | 50592744 | ID=Msa0856190;Name=Msa0856190 |
| chr5_4 | mRNA | 50592744 | 50597437 | 50592744 | ID=Msa0856190-mRNA-1;Parent=Msa0856190;Name=Msa0856190-mRNA-1;_AED=0.13;_eAED=0.13;_QI=211|0.66|0.85|0.85|0.83|0.71|7|334|214 |
| chr5_4 | exon | 50592744 | 50592992 | 50592744 | ID=Msa0856190-mRNA-1:exon:15866;Parent=Msa0856190-mRNA-1 |
| chr5_4 | exon | 50593311 | 50593392 | 50593311 | ID=Msa0856190-mRNA-1:exon:15867;Parent=Msa0856190-mRNA-1 |
| chr5_4 | exon | 50593515 | 50593547 | 50593515 | ID=Msa0856190-mRNA-1:exon:15868;Parent=Msa0856190-mRNA-1 |
| chr5_4 | exon | 50593641 | 50593762 | 50593641 | ID=Msa0856190-mRNA-1:exon:15869;Parent=Msa0856190-mRNA-1 |
| chr5_4 | exon | 50594728 | 50594817 | 50594728 | ID=Msa0856190-mRNA-1:exon:15870;Parent=Msa0856190-mRNA-1 |
| chr5_4 | exon | 50596689 | 50596850 | 50596689 | ID=Msa0856190-mRNA-1:exon:15871;Parent=Msa0856190-mRNA-1 |
| chr5_4 | exon | 50596986 | 50597437 | 50596986 | ID=Msa0856190-mRNA-1:exon:15872;Parent=Msa0856190-mRNA-1 |
| chr5_4 | five_prime_UTR | 50592744 | 50592954 | 50592744 | ID=Msa0856190-mRNA-1:five_prime_utr;Parent=Msa0856190-mRNA-1 |
| chr5_4 | CDS | 50592955 | 50592992 | 50592955 | ID=Msa0856190-mRNA-1:cds;Parent=Msa0856190-mRNA-1 |
| chr5_4 | CDS | 50593311 | 50593392 | 50593311 | ID=Msa0856190-mRNA-1:cds;Parent=Msa0856190-mRNA-1 |
| chr5_4 | CDS | 50593515 | 50593547 | 50593515 | ID=Msa0856190-mRNA-1:cds;Parent=Msa0856190-mRNA-1 |
| chr5_4 | CDS | 50593641 | 50593762 | 50593641 | ID=Msa0856190-mRNA-1:cds;Parent=Msa0856190-mRNA-1 |
| chr5_4 | CDS | 50594728 | 50594817 | 50594728 | ID=Msa0856190-mRNA-1:cds;Parent=Msa0856190-mRNA-1 |
| chr5_4 | CDS | 50596689 | 50596850 | 50596689 | ID=Msa0856190-mRNA-1:cds;Parent=Msa0856190-mRNA-1 |
| chr5_4 | CDS | 50596986 | 50597103 | 50596986 | ID=Msa0856190-mRNA-1:cds;Parent=Msa0856190-mRNA-1 |
| chr5_4 | three_prime_UTR | 50597104 | 50597437 | 50597104 | ID=Msa0856190-mRNA-1:three_prime_utr;Parent=Msa0856190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
