Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227910 | XP_003616274.1 | 85.981 | 214 | 0 | 1 | 1 | 214 | 1 | 184 | 5.50e-125 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227910 | sp|Q8W4C8|ARL8C_ARATH | 80.751 | 213 | 11 | 1 | 1 | 213 | 1 | 183 | 1.60e-122 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227910 | A0A7J6HWU6 | 83.568 | 213 | 31 | 1 | 1 | 213 | 1 | 209 | 4.85e-123 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227910 | Msa0815890 | 0.820824 | 5.592891e-53 | -8.615850e-47 |
| Msa0227910 | Msa0856190 | 0.965857 | 3.753992e-125 | -8.615850e-47 |
| Msa0227910 | Msa0863370 | 0.801538 | 8.587713e-49 | -8.615850e-47 |
| Msa0227910 | Msa0945840 | 0.910176 | 2.509452e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227910 | MtrunA17_Chr5g0434561 | 85.981 | 214 | 0 | 1 | 1 | 214 | 1 | 184 | 5.06e-129 | 361 |
| Msa0227910 | MtrunA17_Chr5g0401071 | 71.226 | 212 | 31 | 1 | 1 | 212 | 1 | 182 | 3.75e-107 | 305 |
| Msa0227910 | MtrunA17_Chr4g0012371 | 65.128 | 195 | 38 | 1 | 20 | 214 | 1 | 165 | 5.19e-88 | 256 |
| Msa0227910 | MtrunA17_Chr7g0270301 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.07e-24 | 95.9 |
| Msa0227910 | MtrunA17_Chr1g0194261 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.14e-24 | 95.9 |
| Msa0227910 | MtrunA17_Chr6g0450081 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.60e-24 | 94.7 |
| Msa0227910 | MtrunA17_Chr5g0413451 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.66e-24 | 94.7 |
| Msa0227910 | MtrunA17_Chr5g0413441 | 29.126 | 206 | 113 | 3 | 1 | 206 | 1 | 173 | 2.66e-24 | 94.7 |
| Msa0227910 | MtrunA17_Chr5g0401761 | 29.082 | 196 | 108 | 2 | 11 | 206 | 9 | 173 | 3.83e-24 | 94.4 |
| Msa0227910 | MtrunA17_Chr4g0072861 | 29.592 | 196 | 107 | 2 | 11 | 206 | 9 | 173 | 1.14e-23 | 93.2 |
| Msa0227910 | MtrunA17_Chr1g0188111 | 31.395 | 172 | 87 | 2 | 14 | 185 | 12 | 152 | 3.92e-22 | 89.0 |
| Msa0227910 | MtrunA17_Chr2g0287721 | 27.700 | 213 | 111 | 3 | 2 | 208 | 7 | 182 | 5.56e-22 | 89.4 |
| Msa0227910 | MtrunA17_Chr4g0039591 | 28.902 | 173 | 92 | 2 | 13 | 185 | 11 | 152 | 5.71e-21 | 86.3 |
| Msa0227910 | MtrunA17_Chr5g0395631 | 26.590 | 173 | 96 | 2 | 13 | 185 | 11 | 152 | 4.30e-19 | 81.3 |
| Msa0227910 | MtrunA17_Chr5g0395641 | 29.143 | 175 | 91 | 3 | 13 | 185 | 11 | 154 | 8.41e-19 | 80.5 |
| Msa0227910 | MtrunA17_Chr8g0373271 | 27.749 | 191 | 104 | 4 | 20 | 208 | 17 | 175 | 3.57e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227910 | AT5G37680.1 | 80.751 | 213 | 11 | 1 | 1 | 213 | 1 | 183 | 1.63e-123 | 347 |
| Msa0227910 | AT5G67560.1 | 69.626 | 214 | 35 | 1 | 1 | 214 | 1 | 184 | 6.95e-106 | 303 |
| Msa0227910 | AT3G49870.1 | 68.692 | 214 | 37 | 1 | 1 | 214 | 1 | 184 | 5.69e-104 | 298 |
| Msa0227910 | AT3G49870.2 | 67.692 | 195 | 33 | 1 | 20 | 214 | 1 | 165 | 2.27e-91 | 265 |
| Msa0227910 | AT5G37680.2 | 75.449 | 167 | 11 | 1 | 48 | 214 | 1 | 137 | 2.46e-87 | 254 |
| Msa0227910 | AT3G49860.1 | 59.898 | 197 | 49 | 1 | 18 | 214 | 10 | 176 | 8.37e-79 | 234 |
| Msa0227910 | AT1G10630.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.57e-24 | 95.9 |
| Msa0227910 | AT1G10630.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.57e-24 | 95.9 |
| Msa0227910 | AT1G23490.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT1G70490.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT1G70490.7 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT1G70490.4 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT1G70490.3 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT1G70490.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT1G70490.6 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT1G70490.5 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 1.60e-24 | 95.9 |
| Msa0227910 | AT3G62290.3 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0227910 | AT3G62290.1 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0227910 | AT3G62290.2 | 29.612 | 206 | 112 | 3 | 1 | 206 | 1 | 173 | 3.13e-24 | 95.1 |
| Msa0227910 | AT2G47170.2 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0227910 | AT2G47170.1 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0227910 | AT2G47170.3 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.52e-24 | 94.7 |
| Msa0227910 | AT5G14670.2 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.87e-24 | 94.7 |
| Msa0227910 | AT5G14670.3 | 29.534 | 193 | 105 | 2 | 14 | 206 | 12 | 173 | 3.87e-24 | 94.7 |
| Msa0227910 | AT5G14670.1 | 31.395 | 172 | 87 | 2 | 14 | 185 | 12 | 152 | 5.60e-24 | 94.4 |
| Msa0227910 | AT2G24765.1 | 27.551 | 196 | 111 | 2 | 11 | 206 | 9 | 173 | 1.03e-21 | 88.6 |
| Msa0227910 | AT3G22950.1 | 30.814 | 172 | 88 | 2 | 14 | 185 | 12 | 152 | 1.32e-21 | 88.2 |
| Msa0227910 | AT3G22950.2 | 30.814 | 172 | 88 | 2 | 14 | 185 | 12 | 152 | 1.32e-21 | 88.2 |
| Msa0227910 | AT5G52210.1 | 28.302 | 212 | 109 | 3 | 2 | 207 | 7 | 181 | 1.38e-21 | 88.6 |
| Msa0227910 | AT5G52210.2 | 28.302 | 212 | 109 | 3 | 2 | 207 | 7 | 181 | 1.38e-21 | 88.6 |
| Msa0227910 | AT5G17060.2 | 28.324 | 173 | 93 | 2 | 13 | 185 | 11 | 152 | 5.98e-21 | 86.7 |
| Msa0227910 | AT5G17060.1 | 28.324 | 173 | 93 | 2 | 13 | 185 | 11 | 152 | 5.98e-21 | 86.7 |
| Msa0227910 | AT3G03120.1 | 27.746 | 173 | 94 | 2 | 13 | 185 | 11 | 152 | 3.57e-20 | 84.7 |
| Msa0227910 | AT2G15310.1 | 25.824 | 182 | 101 | 3 | 17 | 198 | 15 | 162 | 1.30e-18 | 80.9 |
| Msa0227910 | AT2G24765.2 | 28.000 | 150 | 77 | 2 | 11 | 160 | 9 | 127 | 1.04e-16 | 73.9 |
| Msa0227910 | AT3G03120.2 | 27.333 | 150 | 78 | 2 | 13 | 162 | 11 | 129 | 1.20e-16 | 73.9 |
| Msa0227910 | AT2G18390.1 | 27.749 | 191 | 104 | 4 | 20 | 208 | 17 | 175 | 2.18e-15 | 71.6 |
Find 66 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAATTCACTTCGAGTTAT+TGG | 0.140016 | 2_1:-79205578 | None:intergenic |
| AACAAATTGCTTCGTTGATT+TGG | 0.213779 | 2_1:+79206269 | Msa0227910:three_prime_UTR |
| GAAAATCACAAGGCGGTTAT+TGG | 0.233317 | 2_1:+79203645 | Msa0227910:CDS |
| CTTGATATTGTACCAAGTTT+TGG | 0.243962 | 2_1:+79206092 | Msa0227910:three_prime_UTR |
| GGGATTCCTTTGCTTGTTCT+TGG | 0.246105 | 2_1:+79205629 | Msa0227910:CDS |
| ACAATAAAGCTTTGGGATCT+TGG | 0.278062 | 2_1:+79202536 | Msa0227910:CDS |
| AAGCAATTTGTTTAAATTGT+TGG | 0.310341 | 2_1:-79206258 | None:intergenic |
| TTCTTCCTATTCTCAACAAA+TGG | 0.313436 | 2_1:+79201782 | Msa0227910:exon |
| ATGGAAGATTTGACCAAGTT+TGG | 0.317834 | 2_1:-79206043 | None:intergenic |
| TCTGGGATTCTCTTCTCAAT+TGG | 0.329088 | 2_1:+79201808 | Msa0227910:CDS |
| GAGATGGAGCTTTCTCTTGT+AGG | 0.329952 | 2_1:+79202183 | Msa0227910:CDS |
| TTGACCCACAACTAAAATTA+AGG | 0.339003 | 2_1:-79205999 | None:intergenic |
| ATTCTCAACAAATGGGTCTC+TGG | 0.360022 | 2_1:+79201790 | Msa0227910:exon |
| GAGATTCATCCTTTGTTGAT+AGG | 0.386303 | 2_1:+79203603 | Msa0227910:CDS |
| GAAATGTCACAATAAAGCTT+TGG | 0.389200 | 2_1:+79202528 | Msa0227910:CDS |
| AAAATCACAAGGCGGTTATT+GGG | 0.390592 | 2_1:+79203646 | Msa0227910:CDS |
| ACATTCCACAAACCATTCAT+TGG | 0.393712 | 2_1:+79201741 | Msa0227910:five_prime_UTR |
| CTGACCAAACCTTCCTTGAA+TGG | 0.415538 | 2_1:+79205608 | Msa0227910:CDS |
| TTGATCTACCAATGCTTGCT+TGG | 0.418148 | 2_1:-79205681 | None:intergenic |
| AAATGTCACAATAAAGCTTT+GGG | 0.418458 | 2_1:+79202529 | Msa0227910:CDS |
| CTCTTCTCAATTGGCTCCGC+AGG | 0.421148 | 2_1:+79201817 | Msa0227910:CDS |
| AAGAGGACAAGAATTGGAAA+GGG | 0.428893 | 2_1:+79201578 | None:intergenic |
| GTTGAGAATAGGAAGAAAGA+AGG | 0.434689 | 2_1:-79201776 | None:intergenic |
| AATCCCATTCAAGGAAGGTT+TGG | 0.436571 | 2_1:-79205612 | None:intergenic |
| AGCGACCAATGAATGGTTTG+TGG | 0.443931 | 2_1:-79201746 | None:intergenic |
| CTTGTAGGTCTTCAGAATGC+TGG | 0.454580 | 2_1:+79202198 | Msa0227910:CDS |
| TGACCAAACCTTCCTTGAAT+GGG | 0.458229 | 2_1:+79205609 | Msa0227910:CDS |
| GAATGGTTTGTGGAATGTTA+AGG | 0.461935 | 2_1:-79201736 | None:intergenic |
| TTCTCAACAAATGGGTCTCT+GGG | 0.469026 | 2_1:+79201791 | Msa0227910:exon |
| TCTTCCTATTCTCAACAAAT+GGG | 0.470674 | 2_1:+79201783 | Msa0227910:exon |
| GAGACCCATTTGTTGAGAAT+AGG | 0.470753 | 2_1:-79201787 | None:intergenic |
| AAACTTTAGCGACCAATGAA+TGG | 0.477552 | 2_1:-79201753 | None:intergenic |
| AATTGCTTCGTTGATTTGGA+AGG | 0.481442 | 2_1:+79206273 | Msa0227910:three_prime_UTR |
| AACAGAAACCATCCAAAACT+TGG | 0.482714 | 2_1:-79206104 | None:intergenic |
| CATTCAAGGAAGGTTTGGTC+AGG | 0.486407 | 2_1:-79205607 | None:intergenic |
| TTGCTACATGATTTCATGCA+AGG | 0.505231 | 2_1:+79205874 | Msa0227910:CDS |
| AAGCAAAGGAATCCCATTCA+AGG | 0.513568 | 2_1:-79205621 | None:intergenic |
| AGCTCTTTCCAAGCAAGCAT+TGG | 0.513878 | 2_1:+79205673 | Msa0227910:CDS |
| ACATAGATGTGGTCATCGAC+TGG | 0.530688 | 2_1:+79205906 | Msa0227910:CDS |
| AAAGAGGACAAGAATTGGAA+AGG | 0.538629 | 2_1:+79201577 | None:intergenic |
| TTTGGGATCTTGGTGGTCAA+CGG | 0.548867 | 2_1:+79202546 | Msa0227910:CDS |
| TTGTGGAATGTTAAGGAAGG+AGG | 0.549544 | 2_1:-79201729 | None:intergenic |
| TTGTGTACAGTAACCAAACT+TGG | 0.550375 | 2_1:+79206030 | Msa0227910:three_prime_UTR |
| ATAAAGCTTTGGGATCTTGG+TGG | 0.559424 | 2_1:+79202539 | Msa0227910:CDS |
| AATATGCGAAAAGTGACAAA+GGG | 0.561008 | 2_1:+79202506 | Msa0227910:CDS |
| TTGTTTCCAAGAACAAGCAA+AGG | 0.570676 | 2_1:-79205635 | None:intergenic |
| AGTAAGATGTTGATACGATA+CGG | 0.571733 | 2_1:-79201689 | None:intergenic |
| GTCTATGCATTACACTGGAA+AGG | 0.572286 | 2_1:-79205977 | None:intergenic |
| TTTACTCAAGAAACATTGCA+TGG | 0.572723 | 2_1:-79206062 | None:intergenic |
| GTATTATTGTGATCTAAATG+TGG | 0.574237 | 2_1:+79206174 | Msa0227910:three_prime_UTR |
| TTAAGGTCTATGCATTACAC+TGG | 0.574461 | 2_1:-79205982 | None:intergenic |
| AGAGGACAAGAATTGGAAAG+GGG | 0.576237 | 2_1:+79201579 | None:intergenic |
| ATGTGGGAGCGCTACTGTCG+CGG | 0.588919 | 2_1:+79202581 | Msa0227910:CDS |
| AAAGGAATCCCATTCAAGGA+AGG | 0.597544 | 2_1:-79205617 | None:intergenic |
| CAATATGCGAAAAGTGACAA+AGG | 0.599692 | 2_1:+79202505 | Msa0227910:CDS |
| GGTTTGTGGAATGTTAAGGA+AGG | 0.600095 | 2_1:-79201732 | None:intergenic |
| GGGATCTTGGTGGTCAACGG+AGG | 0.604641 | 2_1:+79202549 | Msa0227910:CDS |
| ACGGAGGTTTCGAACAATGT+GGG | 0.644507 | 2_1:+79202565 | Msa0227910:CDS |
| GTAGATTCACACACAAAACA+AGG | 0.649203 | 2_1:+79201611 | Msa0227910:five_prime_UTR |
| GGATTCTGTAAACATAGATG+TGG | 0.658596 | 2_1:+79205895 | Msa0227910:CDS |
| AATTGGAAAGGGGAATCACA+AGG | 0.659154 | 2_1:+79201589 | None:intergenic |
| AACGGAGGTTTCGAACAATG+TGG | 0.660702 | 2_1:+79202564 | Msa0227910:CDS |
| TTGATGAGACCTATCAACAA+AGG | 0.681666 | 2_1:-79203612 | None:intergenic |
| CCAGTATCAAGAAAATCACA+AGG | 0.685548 | 2_1:+79203635 | Msa0227910:CDS |
| TGAGTCAATTAAAGACAGAG+AGG | 0.706022 | 2_1:+79205847 | Msa0227910:CDS |
| GTATCAAGAAAATCACAAGG+CGG | 0.799782 | 2_1:+79203638 | Msa0227910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTTGTTTAAAAATATT+TGG | + | chr2_1:79206152-79206171 | Msa0227910:three_prime_UTR | 10.0% |
| !! | AAATTCATACAAAATTACTT+GGG | - | chr2_1:79202106-79202125 | None:intergenic | 15.0% |
| !!! | TAATTTTAACTCATTATTAC+TGG | + | chr2_1:79202275-79202294 | Msa0227910:intron | 15.0% |
| !! | TAACATAGAATTTAAATGTT+GGG | + | chr2_1:79202861-79202880 | Msa0227910:intron | 15.0% |
| !! | AGAAATTATAGATGATTATT+AGG | + | chr2_1:79203202-79203221 | Msa0227910:intron | 15.0% |
| !!! | ATGCTCTTTTTTTTTTTAAA+CGG | + | chr2_1:79204702-79204721 | Msa0227910:intron | 15.0% |
| !! | AATTGTTAAGAAAGAAAGAA+AGG | - | chr2_1:79201856-79201875 | None:intergenic | 20.0% |
| !! | ATCATATGATATATAGTAAC+TGG | - | chr2_1:79201935-79201954 | None:intergenic | 20.0% |
| !! | TTACTCTAATACAAATTTAG+AGG | - | chr2_1:79202020-79202039 | None:intergenic | 20.0% |
| !! | CAAATTCATACAAAATTACT+TGG | - | chr2_1:79202107-79202126 | None:intergenic | 20.0% |
| !!! | CTTATTTTTTAAACAAGAGA+TGG | + | chr2_1:79202167-79202186 | Msa0227910:CDS | 20.0% |
| !! | ACATTTGAATTCAGAATTTA+AGG | + | chr2_1:79202427-79202446 | Msa0227910:intron | 20.0% |
| !! | GTAACATAGAATTTAAATGT+TGG | + | chr2_1:79202860-79202879 | Msa0227910:intron | 20.0% |
| !! | TAAAGATAAAGTTACCTTAT+TGG | - | chr2_1:79204371-79204390 | None:intergenic | 20.0% |
| !!! | TTAAAAAAAAAAAGAGCATC+TGG | - | chr2_1:79204701-79204720 | None:intergenic | 20.0% |
| !!! | ATCTTGATAATAAAAAACAG+TGG | - | chr2_1:79205103-79205122 | None:intergenic | 20.0% |
| !! | TTTATTATCAAGATGTTGAT+TGG | + | chr2_1:79205109-79205128 | Msa0227910:intron | 20.0% |
| !! | GTTCAAACATAGAAATATAA+AGG | + | chr2_1:79205154-79205173 | Msa0227910:intron | 20.0% |
| !!! | AGACTTTTATTGAACAATTT+TGG | + | chr2_1:79205184-79205203 | Msa0227910:intron | 20.0% |
| !!! | TTTTATGAATAAACAGAGAA+AGG | - | chr2_1:79205327-79205346 | None:intergenic | 20.0% |
| !!! | AGTTATGTTTTTATTACGTA+AGG | - | chr2_1:79205362-79205381 | None:intergenic | 20.0% |
| !!! | AAGCAATTTGTTTAAATTGT+TGG | - | chr2_1:79206261-79206280 | None:intergenic | 20.0% |
| ! | ATGATATATAGTAACTGGAA+TGG | - | chr2_1:79201930-79201949 | None:intergenic | 25.0% |
| ! | ATTAGAGTAAAGATCCAATT+TGG | + | chr2_1:79202030-79202049 | Msa0227910:intron | 25.0% |
| ! | AAAATTGCGAATAACCAAAT+TGG | - | chr2_1:79202047-79202066 | None:intergenic | 25.0% |
| ! | AAAGTAAAGATACTTACAGT+TGG | - | chr2_1:79202401-79202420 | None:intergenic | 25.0% |
| !!! | GAATTTTGCTATTGAACTTT+AGG | + | chr2_1:79202475-79202494 | Msa0227910:intron | 25.0% |
| ! | AAATGTCACAATAAAGCTTT+GGG | + | chr2_1:79202529-79202548 | Msa0227910:CDS | 25.0% |
| !!! | TCCTTTGTCATTTTTTTTGA+AGG | + | chr2_1:79202682-79202701 | Msa0227910:intron | 25.0% |
| ! | ACCTTCAAAAAAAATGACAA+AGG | - | chr2_1:79202686-79202705 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGAAGGTTGTGT+TGG | + | chr2_1:79202691-79202710 | Msa0227910:intron | 25.0% |
| ! | GGAGAAATAAGAAAATACTA+AGG | + | chr2_1:79202829-79202848 | Msa0227910:intron | 25.0% |
| !!! | TAGTTGTTTTATATGCAGTA+GGG | + | chr2_1:79202899-79202918 | Msa0227910:intron | 25.0% |
| ! | CAGCAATGATTGAATTAATA+TGG | + | chr2_1:79202946-79202965 | Msa0227910:intron | 25.0% |
| !!! | ATTAATATGGTGTTGTTCTA+AGG | + | chr2_1:79202959-79202978 | Msa0227910:intron | 25.0% |
| !! | TGTGATAATTGTTTTCTCAT+AGG | + | chr2_1:79203030-79203049 | Msa0227910:intron | 25.0% |
| ! | TTTATTATAAACCCTATAGC+TGG | + | chr2_1:79203134-79203153 | Msa0227910:intron | 25.0% |
| !! | ACCTATTCTAGATCTAAAAT+TGG | + | chr2_1:79203352-79203371 | Msa0227910:intron | 25.0% |
| !!! | TCCAATTTTAGATCTAGAAT+AGG | - | chr2_1:79203356-79203375 | None:intergenic | 25.0% |
| ! | ATTGGACATATTTATACAAG+TGG | - | chr2_1:79203379-79203398 | None:intergenic | 25.0% |
| ! | TACTTGTCATTCTTAGAATT+TGG | - | chr2_1:79203491-79203510 | None:intergenic | 25.0% |
| !! | AAATTCTAAGAATGACAAGT+AGG | + | chr2_1:79203490-79203509 | Msa0227910:intron | 25.0% |
| !! | AATTCTAAGAATGACAAGTA+GGG | + | chr2_1:79203491-79203510 | Msa0227910:intron | 25.0% |
| ! | TGAAGTAGACTCTTATAAAA+CGG | + | chr2_1:79203910-79203929 | Msa0227910:intron | 25.0% |
| ! | AAAGCTAACAATTCTTCAAA+GGG | - | chr2_1:79203960-79203979 | None:intergenic | 25.0% |
| ! | AAAAGCTAACAATTCTTCAA+AGG | - | chr2_1:79203961-79203980 | None:intergenic | 25.0% |
| ! | AGTTCATCCTAAAATGATTT+CGG | + | chr2_1:79204250-79204269 | Msa0227910:intron | 25.0% |
| !! | TTTCGGTTAGTCAATATAAT+TGG | + | chr2_1:79204267-79204286 | Msa0227910:intron | 25.0% |
| !! | TTCGGTTAGTCAATATAATT+GGG | + | chr2_1:79204268-79204287 | Msa0227910:intron | 25.0% |
| ! | AATATAATTGGGTCAAAACA+TGG | + | chr2_1:79204279-79204298 | Msa0227910:intron | 25.0% |
| ! | ATATAATTGGGTCAAAACAT+GGG | + | chr2_1:79204280-79204299 | Msa0227910:intron | 25.0% |
| ! | TAAGGTAACTTTATCTTTAG+TGG | + | chr2_1:79204372-79204391 | Msa0227910:intron | 25.0% |
| ! | TCAACAGTTTGTCTATATAT+TGG | - | chr2_1:79204522-79204541 | None:intergenic | 25.0% |
| ! | TGGTTATAAAAACAAGTATC+AGG | - | chr2_1:79205083-79205102 | None:intergenic | 25.0% |
| !! | CTATAGTAAAATCTAAAGTC+TGG | - | chr2_1:79205219-79205238 | None:intergenic | 25.0% |
| !! | CAGACTTTAGATTTTACTAT+AGG | + | chr2_1:79205217-79205236 | Msa0227910:intron | 25.0% |
| ! | TTACAGAATTATAAGAGTCT+TGG | + | chr2_1:79205249-79205268 | Msa0227910:intron | 25.0% |
| ! | TTATCAGAGAAAAATACAAG+AGG | - | chr2_1:79205406-79205425 | None:intergenic | 25.0% |
| !! | TTTAATTCACTTCGAGTTAT+TGG | - | chr2_1:79205581-79205600 | None:intergenic | 25.0% |
| !!! | ACAGTAATGATGATGATTTT+CGG | - | chr2_1:79205732-79205751 | None:intergenic | 25.0% |
| !!! | ATAGACCTTAATTTTAGTTG+TGG | + | chr2_1:79205994-79206013 | Msa0227910:three_prime_UTR | 25.0% |
| !!! | TAGACCTTAATTTTAGTTGT+GGG | + | chr2_1:79205995-79206014 | Msa0227910:three_prime_UTR | 25.0% |
| ! | GTATTATTGTGATCTAAATG+TGG | + | chr2_1:79206174-79206193 | Msa0227910:three_prime_UTR | 25.0% |
| TAAAAACACAAAACGAACGT+AGG | - | chr2_1:79201664-79201683 | None:intergenic | 30.0% | |
| AGTAAGATGTTGATACGATA+CGG | - | chr2_1:79201692-79201711 | None:intergenic | 30.0% | |
| TTCTTCCTATTCTCAACAAA+TGG | + | chr2_1:79201782-79201801 | Msa0227910:exon | 30.0% | |
| TCTTCCTATTCTCAACAAAT+GGG | + | chr2_1:79201783-79201802 | Msa0227910:exon | 30.0% | |
| AGAAAGAAAGAAAGGAAAGT+GGG | - | chr2_1:79201848-79201867 | None:intergenic | 30.0% | |
| AAGAAAGAAAGAAAGGAAAG+TGG | - | chr2_1:79201849-79201868 | None:intergenic | 30.0% | |
| TTAGAGGTTTAACAACATCA+AGG | - | chr2_1:79202004-79202023 | None:intergenic | 30.0% | |
| ! | GATTGTGAATTTGTGTGTTT+TGG | + | chr2_1:79202141-79202160 | Msa0227910:intron | 30.0% |
| !!! | TTTGTTTTGTTTGACAGACA+GGG | + | chr2_1:79202354-79202373 | Msa0227910:intron | 30.0% |
| !! | TTTGCTATTGAACTTTAGGT+TGG | + | chr2_1:79202479-79202498 | Msa0227910:intron | 30.0% |
| ! | TTGCTATTGAACTTTAGGTT+GGG | + | chr2_1:79202480-79202499 | Msa0227910:intron | 30.0% |
| AATATGCGAAAAGTGACAAA+GGG | + | chr2_1:79202506-79202525 | Msa0227910:CDS | 30.0% | |
| GAAATGTCACAATAAAGCTT+TGG | + | chr2_1:79202528-79202547 | Msa0227910:CDS | 30.0% | |
| !! | CTAGTTGTTTTATATGCAGT+AGG | + | chr2_1:79202898-79202917 | Msa0227910:intron | 30.0% |
| AAAAGGGCTACTAAGTAAAT+TGG | - | chr2_1:79203252-79203271 | None:intergenic | 30.0% | |
| TCATTCTTAGAATTTGGACT+AGG | - | chr2_1:79203485-79203504 | None:intergenic | 30.0% | |
| !! | ATTGGTTTGATCTTCTCAAA+GGG | + | chr2_1:79203859-79203878 | Msa0227910:intron | 30.0% |
| TAGACTCTTATAAAACGGTA+TGG | + | chr2_1:79203915-79203934 | Msa0227910:intron | 30.0% | |
| AGACTCTTATAAAACGGTAT+GGG | + | chr2_1:79203916-79203935 | Msa0227910:intron | 30.0% | |
| ! | ACGTATTGTTAAGGTAGTTT+TGG | - | chr2_1:79204042-79204061 | None:intergenic | 30.0% |
| GAAATACTCACGTATTGTTA+AGG | - | chr2_1:79204051-79204070 | None:intergenic | 30.0% | |
| !! | TGAACCTTCCATTTTAAAGA+TGG | - | chr2_1:79204089-79204108 | None:intergenic | 30.0% |
| ! | TGACTAACCGAAATCATTTT+AGG | - | chr2_1:79204260-79204279 | None:intergenic | 30.0% |
| AAATTGAGGAACAATTAGTG+TGG | + | chr2_1:79204342-79204361 | Msa0227910:intron | 30.0% | |
| ! | CTTTTCAATGAATGAAGAAG+AGG | + | chr2_1:79204630-79204649 | Msa0227910:intron | 30.0% |
| TCCTCATTCTTTCAAACATT+AGG | + | chr2_1:79204666-79204685 | Msa0227910:intron | 30.0% | |
| CCTCATTCTTTCAAACATTA+GGG | + | chr2_1:79204667-79204686 | Msa0227910:intron | 30.0% | |
| TAAAAACAAGTATCAGGAAG+TGG | - | chr2_1:79205077-79205096 | None:intergenic | 30.0% | |
| !!! | TTGAACAATTTTGGTTACTG+AGG | + | chr2_1:79205193-79205212 | Msa0227910:intron | 30.0% |
| AGTTATTGTATGGTTATGGT+AGG | - | chr2_1:79205281-79205300 | None:intergenic | 30.0% | |
| GGATAGTTATTGTATGGTTA+TGG | - | chr2_1:79205285-79205304 | None:intergenic | 30.0% | |
| TGAATAAACAGAGAAAGGAA+AGG | - | chr2_1:79205322-79205341 | None:intergenic | 30.0% | |
| TTAACACATGCTTCATATTG+TGG | + | chr2_1:79205432-79205451 | Msa0227910:intron | 30.0% | |
| ! | GTTTGTTCTTTCGAGTAATT+AGG | + | chr2_1:79205462-79205481 | Msa0227910:intron | 30.0% |
| TAATTAGGAGTTGCATTTCT+TGG | + | chr2_1:79205477-79205496 | Msa0227910:intron | 30.0% | |
| AGTTGTGTTTGCTTTAATCA+TGG | + | chr2_1:79205509-79205528 | Msa0227910:intron | 30.0% | |
| TTGACCCACAACTAAAATTA+AGG | - | chr2_1:79206002-79206021 | None:intergenic | 30.0% | |
| TTTACTCAAGAAACATTGCA+TGG | - | chr2_1:79206065-79206084 | None:intergenic | 30.0% | |
| ! | CTTGATATTGTACCAAGTTT+TGG | + | chr2_1:79206092-79206111 | Msa0227910:three_prime_UTR | 30.0% |
| !!! | ATATTGTACCAAGTTTTGGA+TGG | + | chr2_1:79206096-79206115 | Msa0227910:three_prime_UTR | 30.0% |
| TGGAAAAAAGATCAGTATTG+AGG | + | chr2_1:79206194-79206213 | Msa0227910:three_prime_UTR | 30.0% | |
| ! | ATTGTTGGCACATTTTCATA+TGG | - | chr2_1:79206246-79206265 | None:intergenic | 30.0% |
| ! | AACAAATTGCTTCGTTGATT+TGG | + | chr2_1:79206269-79206288 | Msa0227910:three_prime_UTR | 30.0% |
| GTAGATTCACACACAAAACA+AGG | + | chr2_1:79201611-79201630 | Msa0227910:five_prime_UTR | 35.0% | |
| ! | GAATGGTTTGTGGAATGTTA+AGG | - | chr2_1:79201739-79201758 | None:intergenic | 35.0% |
| ACATTCCACAAACCATTCAT+TGG | + | chr2_1:79201741-79201760 | Msa0227910:five_prime_UTR | 35.0% | |
| AAACTTTAGCGACCAATGAA+TGG | - | chr2_1:79201756-79201775 | None:intergenic | 35.0% | |
| GTTGAGAATAGGAAGAAAGA+AGG | - | chr2_1:79201779-79201798 | None:intergenic | 35.0% | |
| GTGACTATGGTTTCATAGTT+TGG | + | chr2_1:79202318-79202337 | Msa0227910:intron | 35.0% | |
| !!! | GTTTGTTTTGTTTGACAGAC+AGG | + | chr2_1:79202353-79202372 | Msa0227910:intron | 35.0% |
| !!! | TTGTTTTGTTTGACAGACAG+GGG | + | chr2_1:79202355-79202374 | Msa0227910:intron | 35.0% |
| CAATATGCGAAAAGTGACAA+AGG | + | chr2_1:79202505-79202524 | Msa0227910:CDS | 35.0% | |
| !! | ACAATAAAGCTTTGGGATCT+TGG | + | chr2_1:79202536-79202555 | Msa0227910:CDS | 35.0% |
| TTCTGTTAGAACCCAAAGTT+AGG | + | chr2_1:79202758-79202777 | Msa0227910:intron | 35.0% | |
| CAGAAAACAAGCCTAAAATG+TGG | + | chr2_1:79202793-79202812 | Msa0227910:intron | 35.0% | |
| !! | AATATGGTGTTGTTCTAAGG+AGG | + | chr2_1:79202962-79202981 | Msa0227910:intron | 35.0% |
| ! | GGAGGACTTATGTAAGTTTT+TGG | + | chr2_1:79202980-79202999 | Msa0227910:intron | 35.0% |
| ! | TTGGATTGGATCACAAAAGT+CGG | - | chr2_1:79203161-79203180 | None:intergenic | 35.0% |
| ! | TTTTGTGATCCAATCCAAGA+GGG | + | chr2_1:79203163-79203182 | Msa0227910:intron | 35.0% |
| ! | GCTATATTTCAAGTCGATGT+GGG | - | chr2_1:79203230-79203249 | None:intergenic | 35.0% |
| ! | AGATTAGCCAAGGCTTAAAA+GGG | - | chr2_1:79203268-79203287 | None:intergenic | 35.0% |
| ! | AAGATTAGCCAAGGCTTAAA+AGG | - | chr2_1:79203269-79203288 | None:intergenic | 35.0% |
| AATAGGTTGCGATACCATAT+TGG | - | chr2_1:79203339-79203358 | None:intergenic | 35.0% | |
| TATGTCCAATACTAGATGTG+AGG | + | chr2_1:79203389-79203408 | Msa0227910:intron | 35.0% | |
| ATGTCCAATACTAGATGTGA+GGG | + | chr2_1:79203390-79203409 | Msa0227910:intron | 35.0% | |
| !!! | AATGTGACTGAACTAGCTTT+TGG | + | chr2_1:79203452-79203471 | Msa0227910:intron | 35.0% |
| !!! | ATGTGACTGAACTAGCTTTT+GGG | + | chr2_1:79203453-79203472 | Msa0227910:intron | 35.0% |
| ATCTGTTGGAAGAATTCAAG+AGG | + | chr2_1:79203517-79203536 | Msa0227910:intron | 35.0% | |
| TCTGTTGGAAGAATTCAAGA+GGG | + | chr2_1:79203518-79203537 | Msa0227910:intron | 35.0% | |
| GAGATTCATCCTTTGTTGAT+AGG | + | chr2_1:79203603-79203622 | Msa0227910:CDS | 35.0% | |
| TTGATGAGACCTATCAACAA+AGG | - | chr2_1:79203615-79203634 | None:intergenic | 35.0% | |
| ! | CCTTGTGATTTTCTTGATAC+TGG | - | chr2_1:79203638-79203657 | None:intergenic | 35.0% |
| CCAGTATCAAGAAAATCACA+AGG | + | chr2_1:79203635-79203654 | Msa0227910:CDS | 35.0% | |
| GTATCAAGAAAATCACAAGG+CGG | + | chr2_1:79203638-79203657 | Msa0227910:CDS | 35.0% | |
| AAAATCACAAGGCGGTTATT+GGG | + | chr2_1:79203646-79203665 | Msa0227910:CDS | 35.0% | |
| CTAACTGTTCTGTCAAACAT+AGG | - | chr2_1:79203707-79203726 | None:intergenic | 35.0% | |
| AACACATATCATGGATCACT+AGG | + | chr2_1:79203751-79203770 | Msa0227910:intron | 35.0% | |
| AAACACAACTGAAGAAGTCA+AGG | + | chr2_1:79203797-79203816 | Msa0227910:intron | 35.0% | |
| AATTAGCTGGCCATATATGA+GGG | + | chr2_1:79203824-79203843 | Msa0227910:intron | 35.0% | |
| !! | CATTGGTTTGATCTTCTCAA+AGG | + | chr2_1:79203858-79203877 | Msa0227910:intron | 35.0% |
| TACTTCAACTTATCCCAAGT+CGG | - | chr2_1:79203897-79203916 | None:intergenic | 35.0% | |
| GACTCTTATAAAACGGTATG+GGG | + | chr2_1:79203917-79203936 | Msa0227910:intron | 35.0% | |
| ACTCTTATAAAACGGTATGG+GGG | + | chr2_1:79203918-79203937 | Msa0227910:intron | 35.0% | |
| !!! | TTGTTAGCTTTTCGACTGTT+CGG | + | chr2_1:79203969-79203988 | Msa0227910:intron | 35.0% |
| GGTACTATTGAGCAATATAG+AGG | + | chr2_1:79203990-79204009 | Msa0227910:intron | 35.0% | |
| !!! | TTAAGGTAGTTTTGGTACCT+TGG | - | chr2_1:79204034-79204053 | None:intergenic | 35.0% |
| ATACGTGAGTATTTCATGAG+TGG | + | chr2_1:79204056-79204075 | Msa0227910:intron | 35.0% | |
| ! | GTCTTCAGCCATCTTTAAAA+TGG | + | chr2_1:79204078-79204097 | Msa0227910:intron | 35.0% |
| !! | TCAGCCATCTTTAAAATGGA+AGG | + | chr2_1:79204082-79204101 | Msa0227910:intron | 35.0% |
| ! | ATCAACTGCACTCTATTTTG+AGG | - | chr2_1:79204122-79204141 | None:intergenic | 35.0% |
| TAGAGTGCAGTTGATTAGAA+TGG | + | chr2_1:79204127-79204146 | Msa0227910:intron | 35.0% | |
| GTTGATTAGAATGGCTTAGA+TGG | + | chr2_1:79204136-79204155 | Msa0227910:intron | 35.0% | |
| ATTAGAATGGCTTAGATGGA+AGG | + | chr2_1:79204140-79204159 | Msa0227910:intron | 35.0% | |
| ! | TTTAGGATGAACTGAACCTT+AGG | - | chr2_1:79204243-79204262 | None:intergenic | 35.0% |
| CTTGCTAGAACTTGAATCTA+TGG | - | chr2_1:79204308-79204327 | None:intergenic | 35.0% | |
| ACACGTGATCATACAAATTG+AGG | + | chr2_1:79204328-79204347 | Msa0227910:intron | 35.0% | |
| AATTAGTGTGGCTTCCAATA+AGG | + | chr2_1:79204354-79204373 | Msa0227910:intron | 35.0% | |
| TATCTTTAGTGGCGTTAACA+AGG | + | chr2_1:79204383-79204402 | Msa0227910:intron | 35.0% | |
| CGTTAACAAGGAAATGAGAA+GGG | + | chr2_1:79204395-79204414 | Msa0227910:intron | 35.0% | |
| GTTAACAAGGAAATGAGAAG+GGG | + | chr2_1:79204396-79204415 | Msa0227910:intron | 35.0% | |
| TTAACAAGGAAATGAGAAGG+GGG | + | chr2_1:79204397-79204416 | Msa0227910:intron | 35.0% | |
| AACTTAGAACGTAGAGCTAA+AGG | + | chr2_1:79204458-79204477 | Msa0227910:intron | 35.0% | |
| ACTTAGAACGTAGAGCTAAA+GGG | + | chr2_1:79204459-79204478 | Msa0227910:intron | 35.0% | |
| ACTGTTGATGTTGTTAGTGT+TGG | + | chr2_1:79204534-79204553 | Msa0227910:intron | 35.0% | |
| CCCTAATGTTTGAAAGAATG+AGG | - | chr2_1:79204670-79204689 | None:intergenic | 35.0% | |
| ! | TGTAACTTTGCTCCATTTTC+GGG | - | chr2_1:79204769-79204788 | None:intergenic | 35.0% |
| ! | CTGTAACTTTGCTCCATTTT+CGG | - | chr2_1:79204770-79204789 | None:intergenic | 35.0% |
| !! | TTGTCTTGATTTGGTGACTT+TGG | - | chr2_1:79204887-79204906 | None:intergenic | 35.0% |
| TTATGGCTCTTGTCTTGATT+TGG | - | chr2_1:79204896-79204915 | None:intergenic | 35.0% | |
| GGTTCTTTCATAGTCTGTTA+TGG | - | chr2_1:79204913-79204932 | None:intergenic | 35.0% | |
| ATGAAAGAACCGAAACGTTA+AGG | + | chr2_1:79204922-79204941 | Msa0227910:intron | 35.0% | |
| ! | GTGATGGGATAGTTATTGTA+TGG | - | chr2_1:79205291-79205310 | None:intergenic | 35.0% |
| ! | AGGAGAGTACAGAAATCAAT+TGG | - | chr2_1:79205386-79205405 | None:intergenic | 35.0% |
| TTAATCATGGATGCAATTGC+AGG | + | chr2_1:79205522-79205541 | Msa0227910:intron | 35.0% | |
| TTGTTTCCAAGAACAAGCAA+AGG | - | chr2_1:79205638-79205657 | None:intergenic | 35.0% | |
| TGAGTCAATTAAAGACAGAG+AGG | + | chr2_1:79205847-79205866 | Msa0227910:CDS | 35.0% | |
| TTGCTACATGATTTCATGCA+AGG | + | chr2_1:79205874-79205893 | Msa0227910:CDS | 35.0% | |
| GGATTCTGTAAACATAGATG+TGG | + | chr2_1:79205895-79205914 | Msa0227910:CDS | 35.0% | |
| TTAAGGTCTATGCATTACAC+TGG | - | chr2_1:79205985-79206004 | None:intergenic | 35.0% | |
| TTGTGTACAGTAACCAAACT+TGG | + | chr2_1:79206030-79206049 | Msa0227910:three_prime_UTR | 35.0% | |
| ATGGAAGATTTGACCAAGTT+TGG | - | chr2_1:79206046-79206065 | None:intergenic | 35.0% | |
| AACAGAAACCATCCAAAACT+TGG | - | chr2_1:79206107-79206126 | None:intergenic | 35.0% | |
| TTGTGGAATGTTAAGGAAGG+AGG | - | chr2_1:79201732-79201751 | None:intergenic | 40.0% | |
| GGTTTGTGGAATGTTAAGGA+AGG | - | chr2_1:79201735-79201754 | None:intergenic | 40.0% | |
| ! | GAGACCCATTTGTTGAGAAT+AGG | - | chr2_1:79201790-79201809 | None:intergenic | 40.0% |
| ATTCTCAACAAATGGGTCTC+TGG | + | chr2_1:79201790-79201809 | Msa0227910:exon | 40.0% | |
| TTCTCAACAAATGGGTCTCT+GGG | + | chr2_1:79201791-79201810 | Msa0227910:exon | 40.0% | |
| ! | TCTGGGATTCTCTTCTCAAT+TGG | + | chr2_1:79201808-79201827 | Msa0227910:CDS | 40.0% |
| GTTGCTTGTTCTTGTGACTA+TGG | + | chr2_1:79202305-79202324 | Msa0227910:intron | 40.0% | |
| !!! | TGTTTTGTTTGACAGACAGG+GGG | + | chr2_1:79202356-79202375 | Msa0227910:intron | 40.0% |
| !! | ATAAAGCTTTGGGATCTTGG+TGG | + | chr2_1:79202539-79202558 | Msa0227910:CDS | 40.0% |
| ATGATCCAGGACCTAACTTT+GGG | - | chr2_1:79202772-79202791 | None:intergenic | 40.0% | |
| ! | GAGTACACAAGCCACATTTT+AGG | - | chr2_1:79202807-79202826 | None:intergenic | 40.0% |
| ! | AAATGTGGCTTGTGTACTCT+AGG | + | chr2_1:79202808-79202827 | Msa0227910:intron | 40.0% |
| ! | GTTTTCTCATAGGAGAGTCT+CGG | + | chr2_1:79203040-79203059 | Msa0227910:intron | 40.0% |
| !! | GAACTTCCCTATTAGCCTTA+AGG | - | chr2_1:79203066-79203085 | None:intergenic | 40.0% |
| AAGTTCATCTACCATATCCG+CGG | + | chr2_1:79203080-79203099 | Msa0227910:intron | 40.0% | |
| ! | CTTTTGTGATCCAATCCAAG+AGG | + | chr2_1:79203162-79203181 | Msa0227910:intron | 40.0% |
| TTTGTGATCCAATCCAAGAG+GGG | + | chr2_1:79203164-79203183 | Msa0227910:intron | 40.0% | |
| ! | GGCTATATTTCAAGTCGATG+TGG | - | chr2_1:79203231-79203250 | None:intergenic | 40.0% |
| ! | TTAGTAGCCCTTTTAAGCCT+TGG | + | chr2_1:79203258-79203277 | Msa0227910:intron | 40.0% |
| AATCCCATAAGCTACCTCAA+GGG | - | chr2_1:79203295-79203314 | None:intergenic | 40.0% | |
| TAATCCCATAAGCTACCTCA+AGG | - | chr2_1:79203296-79203315 | None:intergenic | 40.0% | |
| GCGATACCATATTGGAGTAT+GGG | - | chr2_1:79203331-79203350 | None:intergenic | 40.0% | |
| TGCGATACCATATTGGAGTA+TGG | - | chr2_1:79203332-79203351 | None:intergenic | 40.0% | |
| TGTCCAATACTAGATGTGAG+GGG | + | chr2_1:79203391-79203410 | Msa0227910:intron | 40.0% | |
| !!! | TGTGACTGAACTAGCTTTTG+GGG | + | chr2_1:79203454-79203473 | Msa0227910:intron | 40.0% |
| AGAATTCAAGAGGGCAAACA+TGG | + | chr2_1:79203527-79203546 | Msa0227910:intron | 40.0% | |
| GCATATGTGTCACAATACTG+AGG | + | chr2_1:79203553-79203572 | Msa0227910:intron | 40.0% | |
| TCACAATACTGAGGATTGCA+GGG | + | chr2_1:79203562-79203581 | Msa0227910:intron | 40.0% | |
| GAAAATCACAAGGCGGTTAT+TGG | + | chr2_1:79203645-79203664 | Msa0227910:CDS | 40.0% | |
| AGTCCAAAAAACTCGTCTGA+CGG | + | chr2_1:79203725-79203744 | Msa0227910:intron | 40.0% | |
| TGACGGAACAACACATATCA+TGG | + | chr2_1:79203742-79203761 | Msa0227910:intron | 40.0% | |
| AAGTCAAGGTGAGAATTAGC+TGG | + | chr2_1:79203811-79203830 | Msa0227910:intron | 40.0% | |
| GAATTAGCTGGCCATATATG+AGG | + | chr2_1:79203823-79203842 | Msa0227910:intron | 40.0% | |
| ATTAGCTGGCCATATATGAG+GGG | + | chr2_1:79203825-79203844 | Msa0227910:intron | 40.0% | |
| !! | ATCCCAAGTCGGTTTTTCTT+CGG | - | chr2_1:79203886-79203905 | None:intergenic | 40.0% |
| TTATAAAACGGTATGGGGGA+TGG | + | chr2_1:79203922-79203941 | Msa0227910:intron | 40.0% | |
| TATAAAACGGTATGGGGGAT+GGG | + | chr2_1:79203923-79203942 | Msa0227910:intron | 40.0% | |
| !!! | TTTTGTGTTGATTCCCTCCA+AGG | + | chr2_1:79204014-79204033 | Msa0227910:intron | 40.0% |
| AGCCTCAAGAGATGGTTATT+GGG | + | chr2_1:79204175-79204194 | Msa0227910:intron | 40.0% | |
| TTCCCAATAACCATCTCTTG+AGG | - | chr2_1:79204180-79204199 | None:intergenic | 40.0% | |
| AGATGGTTATTGGGAAACAG+TGG | + | chr2_1:79204184-79204203 | Msa0227910:intron | 40.0% | |
| !!! | GAGGCAGCTTGTTAAGTTTT+CGG | + | chr2_1:79204212-79204231 | Msa0227910:intron | 40.0% |
| ! | TAAGTTTTCGGCCTAACCTA+AGG | + | chr2_1:79204224-79204243 | Msa0227910:intron | 40.0% |
| GATGAACTGAACCTTAGGTT+AGG | - | chr2_1:79204238-79204257 | None:intergenic | 40.0% | |
| GCGTTAACAAGGAAATGAGA+AGG | + | chr2_1:79204394-79204413 | Msa0227910:intron | 40.0% | |
| TGTGGTGAAAATTCCATTCG+CGG | + | chr2_1:79204494-79204513 | Msa0227910:intron | 40.0% | |
| ! | GTTGATGTTGTTAGTGTTGG+AGG | + | chr2_1:79204537-79204556 | Msa0227910:intron | 40.0% |
| !! | TGACTTTGGTCTTGGTGTTT+GGG | - | chr2_1:79204873-79204892 | None:intergenic | 40.0% |
| !! | TGATTTGGTGACTTTGGTCT+TGG | - | chr2_1:79204881-79204900 | None:intergenic | 40.0% |
| AGACAAAGGCCTTAACGTTT+CGG | - | chr2_1:79204934-79204953 | None:intergenic | 40.0% | |
| ACCGCCTGTTTCAAGAATTT+GGG | + | chr2_1:79205022-79205041 | Msa0227910:intron | 40.0% | |
| ACCCAAATTCTTGAAACAGG+CGG | - | chr2_1:79205026-79205045 | None:intergenic | 40.0% | |
| GGTACCCAAATTCTTGAAAC+AGG | - | chr2_1:79205029-79205048 | None:intergenic | 40.0% | |
| TTCAAGAATTTGGGTACCTC+AGG | + | chr2_1:79205031-79205050 | Msa0227910:intron | 40.0% | |
| ! | ATCAAGATGTTGATTGGTCG+TGG | + | chr2_1:79205115-79205134 | Msa0227910:intron | 40.0% |
| AGAGAAAGGAAAGGAGAAAG+GGG | - | chr2_1:79205313-79205332 | None:intergenic | 40.0% | |
| CAGAGAAAGGAAAGGAGAAA+GGG | - | chr2_1:79205314-79205333 | None:intergenic | 40.0% | |
| ACAGAGAAAGGAAAGGAGAA+AGG | - | chr2_1:79205315-79205334 | None:intergenic | 40.0% | |
| TGACCAAACCTTCCTTGAAT+GGG | + | chr2_1:79205609-79205628 | Msa0227910:CDS | 40.0% | |
| AATCCCATTCAAGGAAGGTT+TGG | - | chr2_1:79205615-79205634 | None:intergenic | 40.0% | |
| AAAGGAATCCCATTCAAGGA+AGG | - | chr2_1:79205620-79205639 | None:intergenic | 40.0% | |
| AAGCAAAGGAATCCCATTCA+AGG | - | chr2_1:79205624-79205643 | None:intergenic | 40.0% | |
| TTGATCTACCAATGCTTGCT+TGG | - | chr2_1:79205684-79205703 | None:intergenic | 40.0% | |
| AACCTTTGATTGTTCGACGT+TGG | + | chr2_1:79205808-79205827 | Msa0227910:intron | 40.0% | |
| AACCAACGTCGAACAATCAA+AGG | - | chr2_1:79205813-79205832 | None:intergenic | 40.0% | |
| GTCTATGCATTACACTGGAA+AGG | - | chr2_1:79205980-79205999 | None:intergenic | 40.0% | |
| AGCGACCAATGAATGGTTTG+TGG | - | chr2_1:79201749-79201768 | None:intergenic | 45.0% | |
| !! | AGGAAAGTGGGTTTTACCTG+CGG | - | chr2_1:79201836-79201855 | None:intergenic | 45.0% |
| GAGATGGAGCTTTCTCTTGT+AGG | + | chr2_1:79202183-79202202 | Msa0227910:CDS | 45.0% | |
| CTTGTAGGTCTTCAGAATGC+TGG | + | chr2_1:79202198-79202217 | Msa0227910:CDS | 45.0% | |
| ! | TTTGGGATCTTGGTGGTCAA+CGG | + | chr2_1:79202546-79202565 | Msa0227910:CDS | 45.0% |
| AACGGAGGTTTCGAACAATG+TGG | + | chr2_1:79202564-79202583 | Msa0227910:CDS | 45.0% | |
| ACGGAGGTTTCGAACAATGT+GGG | + | chr2_1:79202565-79202584 | Msa0227910:CDS | 45.0% | |
| TAGAACCCAAAGTTAGGTCC+TGG | + | chr2_1:79202764-79202783 | Msa0227910:intron | 45.0% | |
| CATGATCCAGGACCTAACTT+TGG | - | chr2_1:79202773-79202792 | None:intergenic | 45.0% | |
| !! | GCTTGTTTTCTGCATGATCC+AGG | - | chr2_1:79202785-79202804 | None:intergenic | 45.0% |
| TCTCGGCCTTAAGGCTAATA+GGG | + | chr2_1:79203057-79203076 | Msa0227910:intron | 45.0% | |
| AGTTCATCTACCATATCCGC+GGG | + | chr2_1:79203081-79203100 | Msa0227910:intron | 45.0% | |
| ! | ACAAAGAGTACATCAACCCG+CGG | - | chr2_1:79203100-79203119 | None:intergenic | 45.0% |
| CAAAAGTCGGACCAGCTATA+GGG | - | chr2_1:79203148-79203167 | None:intergenic | 45.0% | |
| ACAAAAGTCGGACCAGCTAT+AGG | - | chr2_1:79203149-79203168 | None:intergenic | 45.0% | |
| ATCCCATAAGCTACCTCAAG+GGG | - | chr2_1:79203294-79203313 | None:intergenic | 45.0% | |
| ! | CCATATTGGAGTATGGGCTA+GGG | - | chr2_1:79203325-79203344 | None:intergenic | 45.0% |
| ACCATATTGGAGTATGGGCT+AGG | - | chr2_1:79203326-79203345 | None:intergenic | 45.0% | |
| GTCCAATACTAGATGTGAGG+GGG | + | chr2_1:79203392-79203411 | Msa0227910:intron | 45.0% | |
| TCCAATACTAGATGTGAGGG+GGG | + | chr2_1:79203393-79203412 | Msa0227910:intron | 45.0% | |
| ! | GACAAGTAGGGTTGATCTGT+TGG | + | chr2_1:79203503-79203522 | Msa0227910:intron | 45.0% |
| GTCACAATACTGAGGATTGC+AGG | + | chr2_1:79203561-79203580 | Msa0227910:intron | 45.0% | |
| !!! | GTTCCGTCAGACGAGTTTTT+TGG | - | chr2_1:79203731-79203750 | None:intergenic | 45.0% |
| ! | GACCGAAGAAAAACCGACTT+GGG | + | chr2_1:79203881-79203900 | Msa0227910:intron | 45.0% |
| !!! | GGTAGTTTTGGTACCTTGGA+GGG | - | chr2_1:79204030-79204049 | None:intergenic | 45.0% |
| !!! | AGGTAGTTTTGGTACCTTGG+AGG | - | chr2_1:79204031-79204050 | None:intergenic | 45.0% |
| CAGCCTCAAGAGATGGTTAT+TGG | + | chr2_1:79204174-79204193 | Msa0227910:intron | 45.0% | |
| TGGTTATTGGGAAACAGTGG+TGG | + | chr2_1:79204187-79204206 | Msa0227910:intron | 45.0% | |
| TTATTGGGAAACAGTGGTGG+TGG | + | chr2_1:79204190-79204209 | Msa0227910:intron | 45.0% | |
| AAAGGGTTGTGCTTCAAGTG+TGG | + | chr2_1:79204476-79204495 | Msa0227910:intron | 45.0% | |
| !! | CTATATATTGGTGCCGCGAA+TGG | - | chr2_1:79204510-79204529 | None:intergenic | 45.0% |
| GGTTCATCTTGTGCTCGATT+TGG | - | chr2_1:79204748-79204767 | None:intergenic | 45.0% | |
| GCACAAGATGAACCCGAAAA+TGG | + | chr2_1:79204754-79204773 | Msa0227910:intron | 45.0% | |
| ACAACAAAACACCCAGCCAA+AGG | + | chr2_1:79204796-79204815 | Msa0227910:intron | 45.0% | |
| !! | GTGACTTTGGTCTTGGTGTT+TGG | - | chr2_1:79204874-79204893 | None:intergenic | 45.0% |
| ATTCTTGAAACAGGCGGTGT+AGG | - | chr2_1:79205020-79205039 | None:intergenic | 45.0% | |
| CACCGCCTGTTTCAAGAATT+TGG | + | chr2_1:79205021-79205040 | Msa0227910:intron | 45.0% | |
| TACCTCAGGTCGTAATAGCT+TGG | + | chr2_1:79205045-79205064 | Msa0227910:intron | 45.0% | |
| ATCCAAGCTATTACGACCTG+AGG | - | chr2_1:79205050-79205069 | None:intergenic | 45.0% | |
| TCGTGGATGCTGATAGAAAC+TGG | + | chr2_1:79205132-79205151 | Msa0227910:intron | 45.0% | |
| ! | CATTCAAGGAAGGTTTGGTC+AGG | - | chr2_1:79205610-79205629 | None:intergenic | 45.0% |
| CTGACCAAACCTTCCTTGAA+TGG | + | chr2_1:79205608-79205627 | Msa0227910:CDS | 45.0% | |
| GGGATTCCTTTGCTTGTTCT+TGG | + | chr2_1:79205629-79205648 | Msa0227910:CDS | 45.0% | |
| AGCTCTTTCCAAGCAAGCAT+TGG | + | chr2_1:79205673-79205692 | Msa0227910:CDS | 45.0% | |
| ! | TCGACGTTGGTTGATTTCAG+AGG | + | chr2_1:79205821-79205840 | Msa0227910:intron | 45.0% |
| ACATAGATGTGGTCATCGAC+TGG | + | chr2_1:79205906-79205925 | Msa0227910:CDS | 45.0% | |
| ATAGGAGAGTCTCGGCCTTA+AGG | + | chr2_1:79203048-79203067 | Msa0227910:intron | 50.0% | |
| GTCTCGGCCTTAAGGCTAAT+AGG | + | chr2_1:79203056-79203075 | Msa0227910:intron | 50.0% | |
| AGTACATCAACCCGCGGATA+TGG | - | chr2_1:79203094-79203113 | None:intergenic | 50.0% | |
| !! | GCGGGTTGATGTACTCTTTG+TGG | + | chr2_1:79203099-79203118 | Msa0227910:intron | 50.0% |
| TGATCCAATCCAAGAGGGGA+GGG | + | chr2_1:79203168-79203187 | Msa0227910:intron | 50.0% | |
| AATTCACAACCCTCCCCTCT+TGG | - | chr2_1:79203180-79203199 | None:intergenic | 50.0% | |
| ! | CAAGGGGTGAAGATTAGCCA+AGG | - | chr2_1:79203278-79203297 | None:intergenic | 50.0% |
| TGGCTAATCTTCACCCCTTG+AGG | + | chr2_1:79203278-79203297 | Msa0227910:intron | 50.0% | |
| TCACCCCTTGAGGTAGCTTA+TGG | + | chr2_1:79203288-79203307 | Msa0227910:intron | 50.0% | |
| CACCCCTTGAGGTAGCTTAT+GGG | + | chr2_1:79203289-79203308 | Msa0227910:intron | 50.0% | |
| CCCTAGCCCATACTCCAATA+TGG | + | chr2_1:79203322-79203341 | Msa0227910:intron | 50.0% | |
| ACCCCCCTCACATCTAGTAT+TGG | - | chr2_1:79203397-79203416 | None:intergenic | 50.0% | |
| AATACTAGATGTGAGGGGGG+TGG | + | chr2_1:79203396-79203415 | Msa0227910:intron | 50.0% | |
| GCTGTTCCTCCCCTCATATA+TGG | - | chr2_1:79203837-79203856 | None:intergenic | 50.0% | |
| GGACCGAAGAAAAACCGACT+TGG | + | chr2_1:79203880-79203899 | Msa0227910:intron | 50.0% | |
| !! | GGTCTTGGTGTTTGGGATCT+TGG | - | chr2_1:79204866-79204885 | None:intergenic | 50.0% |
| CAAAGAAGCCATAGCGTCAC+AGG | - | chr2_1:79204967-79204986 | None:intergenic | 50.0% | |
| CTGTGACGCTATGGCTTCTT+TGG | + | chr2_1:79204965-79204984 | Msa0227910:intron | 50.0% | |
| GGAAAGGAGAAAGGGGTGAT+GGG | - | chr2_1:79205306-79205325 | None:intergenic | 50.0% | |
| AGGAAAGGAGAAAGGGGTGA+TGG | - | chr2_1:79205307-79205326 | None:intergenic | 50.0% | |
| ! | CTCTTCTCAATTGGCTCCGC+AGG | + | chr2_1:79201817-79201836 | Msa0227910:CDS | 55.0% |
| ACAGACAGGGGGATACAGTG+AGG | + | chr2_1:79202367-79202386 | Msa0227910:intron | 55.0% | |
| GTGATCCAATCCAAGAGGGG+AGG | + | chr2_1:79203167-79203186 | Msa0227910:intron | 55.0% | |
| ACAACCCTCCCCTCTTGGAT+TGG | - | chr2_1:79203175-79203194 | None:intergenic | 55.0% | |
| AGCTGGCCATATATGAGGGG+AGG | + | chr2_1:79203828-79203847 | Msa0227910:intron | 55.0% | |
| TGAGGGGAGGAACAGCTCAT+TGG | + | chr2_1:79203841-79203860 | Msa0227910:intron | 55.0% | |
| CACTCTGCAGCCTCAAGAGA+TGG | + | chr2_1:79204167-79204186 | Msa0227910:intron | 55.0% | |
| !! | TTGGGAAACAGTGGTGGTGG+AGG | + | chr2_1:79204193-79204212 | Msa0227910:intron | 55.0% |
| TGACTCGTGACGTGAGCCTT+TGG | - | chr2_1:79204815-79204834 | None:intergenic | 55.0% | |
| AGAAGCCATAGCGTCACAGG+CGG | - | chr2_1:79204964-79204983 | None:intergenic | 55.0% | |
| AAACAGGCGGTGTAGGTGGT+AGG | - | chr2_1:79205013-79205032 | None:intergenic | 55.0% | |
| CTTGAAACAGGCGGTGTAGG+TGG | - | chr2_1:79205017-79205036 | None:intergenic | 55.0% | |
| ! | GGGATCTTGGTGGTCAACGG+AGG | + | chr2_1:79202549-79202568 | Msa0227910:CDS | 60.0% |
| !! | ATGTGGGAGCGCTACTGTCG+CGG | + | chr2_1:79202581-79202600 | Msa0227910:CDS | 60.0% |
| CGTGACGTGAGCCTTTGGCT+GGG | - | chr2_1:79204810-79204829 | None:intergenic | 60.0% | |
| TCGTGACGTGAGCCTTTGGC+TGG | - | chr2_1:79204811-79204830 | None:intergenic | 60.0% | |
| CAGGCGGAGGTCAGAGACAA+AGG | - | chr2_1:79204948-79204967 | None:intergenic | 60.0% | |
| !! | GTGTAGGTGGTAGGCGTCGA+AGG | - | chr2_1:79205004-79205023 | None:intergenic | 60.0% |
| GACCTCCGCCTGTGACGCTA+TGG | + | chr2_1:79204956-79204975 | Msa0227910:intron | 65.0% | |
| AGCCATAGCGTCACAGGCGG+AGG | - | chr2_1:79204961-79204980 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 79201591 | 79206292 | 79201591 | ID=Msa0227910;Name=Msa0227910 |
| chr2_1 | mRNA | 79201591 | 79206292 | 79201591 | ID=Msa0227910-mRNA-1;Parent=Msa0227910;Name=Msa0227910-mRNA-1;_AED=0.13;_eAED=0.13;_QI=210|0.66|0.85|0.85|1|1|7|334|214 |
| chr2_1 | exon | 79201591 | 79201838 | 79201591 | ID=Msa0227910-mRNA-1:exon:24117;Parent=Msa0227910-mRNA-1 |
| chr2_1 | exon | 79202167 | 79202248 | 79202167 | ID=Msa0227910-mRNA-1:exon:24118;Parent=Msa0227910-mRNA-1 |
| chr2_1 | exon | 79202371 | 79202403 | 79202371 | ID=Msa0227910-mRNA-1:exon:24119;Parent=Msa0227910-mRNA-1 |
| chr2_1 | exon | 79202497 | 79202618 | 79202497 | ID=Msa0227910-mRNA-1:exon:24120;Parent=Msa0227910-mRNA-1 |
| chr2_1 | exon | 79203583 | 79203672 | 79203583 | ID=Msa0227910-mRNA-1:exon:24121;Parent=Msa0227910-mRNA-1 |
| chr2_1 | exon | 79205544 | 79205705 | 79205544 | ID=Msa0227910-mRNA-1:exon:24122;Parent=Msa0227910-mRNA-1 |
| chr2_1 | exon | 79205841 | 79206292 | 79205841 | ID=Msa0227910-mRNA-1:exon:24123;Parent=Msa0227910-mRNA-1 |
| chr2_1 | five_prime_UTR | 79201591 | 79201800 | 79201591 | ID=Msa0227910-mRNA-1:five_prime_utr;Parent=Msa0227910-mRNA-1 |
| chr2_1 | CDS | 79201801 | 79201838 | 79201801 | ID=Msa0227910-mRNA-1:cds;Parent=Msa0227910-mRNA-1 |
| chr2_1 | CDS | 79202167 | 79202248 | 79202167 | ID=Msa0227910-mRNA-1:cds;Parent=Msa0227910-mRNA-1 |
| chr2_1 | CDS | 79202371 | 79202403 | 79202371 | ID=Msa0227910-mRNA-1:cds;Parent=Msa0227910-mRNA-1 |
| chr2_1 | CDS | 79202497 | 79202618 | 79202497 | ID=Msa0227910-mRNA-1:cds;Parent=Msa0227910-mRNA-1 |
| chr2_1 | CDS | 79203583 | 79203672 | 79203583 | ID=Msa0227910-mRNA-1:cds;Parent=Msa0227910-mRNA-1 |
| chr2_1 | CDS | 79205544 | 79205705 | 79205544 | ID=Msa0227910-mRNA-1:cds;Parent=Msa0227910-mRNA-1 |
| chr2_1 | CDS | 79205841 | 79205958 | 79205841 | ID=Msa0227910-mRNA-1:cds;Parent=Msa0227910-mRNA-1 |
| chr2_1 | three_prime_UTR | 79205959 | 79206292 | 79205959 | ID=Msa0227910-mRNA-1:three_prime_utr;Parent=Msa0227910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
