Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816670 | sp|Q0JHU5|ERG1_ORYSJ | 45.395 | 152 | 81 | 1 | 4 | 153 | 5 | 156 | 9.18e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816670 | G7KBR3 | 95.597 | 159 | 6 | 1 | 1 | 158 | 1 | 159 | 4.94e-109 | 316 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737500 | Msa0816670 | 0.835652 | 1.481133e-56 | -8.615850e-47 |
| Msa0779280 | Msa0816670 | 0.815840 | 7.522050e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816670 | MtrunA17_Chr5g0435261 | 95.597 | 159 | 6 | 1 | 1 | 158 | 1 | 159 | 9.51e-113 | 316 |
| Msa0816670 | MtrunA17_Chr5g0435251 | 60.000 | 155 | 60 | 2 | 1 | 155 | 1 | 153 | 1.12e-59 | 182 |
| Msa0816670 | MtrunA17_Chr8g0350031 | 42.675 | 157 | 75 | 5 | 1 | 154 | 1 | 145 | 5.51e-36 | 122 |
| Msa0816670 | MtrunA17_Chr8g0350021 | 40.127 | 157 | 79 | 5 | 1 | 154 | 1 | 145 | 8.37e-33 | 113 |
| Msa0816670 | MtrunA17_Chr8g0348941 | 31.944 | 144 | 96 | 2 | 1 | 143 | 1 | 143 | 3.45e-20 | 82.4 |
| Msa0816670 | MtrunA17_Chr1g0147471 | 43.750 | 64 | 32 | 1 | 27 | 90 | 2 | 61 | 4.09e-16 | 68.6 |
| Msa0816670 | MtrunA17_Chr7g0246521 | 42.857 | 56 | 28 | 1 | 27 | 82 | 2 | 53 | 4.75e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816670 | AT3G55470.2 | 45.752 | 153 | 82 | 1 | 1 | 153 | 1 | 152 | 1.73e-44 | 144 |
| Msa0816670 | AT3G55470.1 | 45.455 | 154 | 82 | 2 | 1 | 153 | 1 | 153 | 1.21e-42 | 139 |
| Msa0816670 | AT1G63220.1 | 39.623 | 159 | 80 | 6 | 1 | 155 | 1 | 147 | 1.19e-27 | 100 |
| Msa0816670 | AT4G00467.2 | 33.088 | 136 | 86 | 2 | 1 | 134 | 1 | 133 | 5.91e-21 | 84.7 |
| Msa0816670 | AT4G00467.1 | 33.088 | 136 | 86 | 2 | 1 | 134 | 1 | 133 | 1.07e-20 | 84.3 |
| Msa0816670 | AT1G63220.2 | 35.849 | 159 | 72 | 6 | 1 | 155 | 1 | 133 | 1.33e-20 | 82.4 |
| Msa0816670 | AT4G34150.1 | 36.082 | 97 | 57 | 3 | 5 | 101 | 11 | 102 | 5.80e-13 | 64.7 |
Find 39 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATAGCACTTGTTTCTT+TGG | 0.198258 | 5_3:+51173476 | Msa0816670:CDS |
| TTCTTTCTAGCAAGTATTAA+AGG | 0.201526 | 5_3:+51174356 | Msa0816670:three_prime_UTR |
| TTATCTCAAGGGGTCCAAAA+TGG | 0.279883 | 5_3:+51173960 | Msa0816670:CDS |
| GTAGCTTAGCAACCCCATTT+TGG | 0.295242 | 5_3:-51173974 | None:intergenic |
| GTAGAGGCAGAAATCATATA+TGG | 0.321352 | 5_3:+51173693 | Msa0816670:CDS |
| AGATATGGCAATTGGGATAA+TGG | 0.328865 | 5_3:+51173427 | Msa0816670:exon |
| CAAAATCATTCTCAAAATAA+TGG | 0.341138 | 5_3:+51173766 | Msa0816670:CDS |
| ACACTTAAAGATATGGCAAT+TGG | 0.360757 | 5_3:+51173419 | Msa0816670:exon |
| TATCTCAAGGGGTCCAAAAT+GGG | 0.371197 | 5_3:+51173961 | Msa0816670:CDS |
| TCTTTCTAGCAAGTATTAAA+GGG | 0.405096 | 5_3:+51174357 | Msa0816670:three_prime_UTR |
| TTCTCATACACTTAAAGATA+TGG | 0.438648 | 5_3:+51173412 | Msa0816670:exon |
| CACTTAAAGATATGGCAATT+GGG | 0.452310 | 5_3:+51173420 | Msa0816670:exon |
| TGATATTGTATCAAAACATA+AGG | 0.472307 | 5_3:-51173638 | None:intergenic |
| CAATCTCTCCACGATAAGAT+TGG | 0.475600 | 5_3:-51174028 | None:intergenic |
| CAAAGAAACAAGTGCTATTG+AGG | 0.483426 | 5_3:-51173475 | None:intergenic |
| CAATATTAATATAGGTGGAA+TGG | 0.483603 | 5_3:+51173610 | Msa0816670:intron |
| GTACATCTTGTGAAAGCAAA+AGG | 0.483814 | 5_3:+51173452 | Msa0816670:CDS |
| CCACACGGCTCCTATGCTCT+TGG | 0.487013 | 5_3:-51173664 | None:intergenic |
| TAAAAGATTTATTATCTCAA+GGG | 0.487430 | 5_3:+51173949 | Msa0816670:CDS |
| GTAAAAGATTTATTATCTCA+AGG | 0.493399 | 5_3:+51173948 | Msa0816670:CDS |
| CATAGGAGCCGTGTGGCTAA+AGG | 0.495986 | 5_3:+51173671 | Msa0816670:CDS |
| AATTCATTCGCAGGTGGAAG+AGG | 0.506526 | 5_3:+51174186 | Msa0816670:intron |
| TGCCTCTACCTTTAGCCACA+CGG | 0.519437 | 5_3:-51173679 | None:intergenic |
| AGCCGTGTGGCTAAAGGTAG+AGG | 0.540209 | 5_3:+51173677 | Msa0816670:CDS |
| TAGAGGCAGAAATCATATAT+GGG | 0.541180 | 5_3:+51173694 | Msa0816670:CDS |
| TTGAAGAAGACATAGGAGGA+TGG | 0.550578 | 5_3:+51174215 | Msa0816670:CDS |
| GATAAATGTATGTTGTTACA+TGG | 0.553610 | 5_3:+51174379 | Msa0816670:three_prime_UTR |
| GAATTAATTGAAGAAGACAT+AGG | 0.564791 | 5_3:+51174208 | Msa0816670:CDS |
| AATATCAAGGCCAAGAGCAT+AGG | 0.578423 | 5_3:+51173654 | Msa0816670:CDS |
| AAAAGATTTATTATCTCAAG+GGG | 0.586205 | 5_3:+51173950 | Msa0816670:CDS |
| CGAACAACTCTATACTTGAG+AGG | 0.601631 | 5_3:-51173999 | None:intergenic |
| ATCTCAAGGGGTCCAAAATG+GGG | 0.615098 | 5_3:+51173962 | Msa0816670:CDS |
| TTAATTGAAGAAGACATAGG+AGG | 0.621683 | 5_3:+51174211 | Msa0816670:CDS |
| ATGTTCAAAGTAGAAAACAA+TGG | 0.628110 | 5_3:+51173728 | Msa0816670:CDS |
| TGTTGTTACATGGAACCTCT+AGG | 0.632829 | 5_3:+51174389 | Msa0816670:three_prime_UTR |
| TATTAATATAGGTGGAATGG+AGG | 0.638048 | 5_3:+51173613 | Msa0816670:intron |
| CGTGCAGACCAATCTTATCG+TGG | 0.690565 | 5_3:+51174020 | Msa0816670:CDS |
| ACAACTCTATACTTGAGAGG+TGG | 0.693150 | 5_3:-51173996 | None:intergenic |
| CCAAGAGCATAGGAGCCGTG+TGG | 0.728413 | 5_3:+51173664 | Msa0816670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_3:51174074-51174093 | None:intergenic | 10.0% |
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_3:51174074-51174093 | None:intergenic | 10.0% |
| !!! | TTTTTTGAATTTAAATCTTC+AGG | + | chr5_3:51173373-51173392 | Msa0816670:five_prime_UTR | 15.0% |
| !!! | TTTTTGAATTTAAATCTTCA+GGG | + | chr5_3:51173374-51173393 | Msa0816670:five_prime_UTR | 15.0% |
| !!! | TTTTACAATATTAATATAGG+TGG | + | chr5_3:51173605-51173624 | Msa0816670:intron | 15.0% |
| !! | TAAAAGATTTATTATCTCAA+GGG | + | chr5_3:51173949-51173968 | Msa0816670:CDS | 15.0% |
| !!! | TTTTTTGAATTTAAATCTTC+AGG | + | chr5_3:51173373-51173392 | Msa0816670:five_prime_UTR | 15.0% |
| !!! | TTTTTGAATTTAAATCTTCA+GGG | + | chr5_3:51173374-51173393 | Msa0816670:five_prime_UTR | 15.0% |
| !!! | TTTTACAATATTAATATAGG+TGG | + | chr5_3:51173605-51173624 | Msa0816670:intron | 15.0% |
| !! | TAAAAGATTTATTATCTCAA+GGG | + | chr5_3:51173949-51173968 | Msa0816670:CDS | 15.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_3:51173575-51173594 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_3:51173576-51173595 | None:intergenic | 20.0% |
| !! | TGATATTGTATCAAAACATA+AGG | - | chr5_3:51173641-51173660 | None:intergenic | 20.0% |
| !!! | TATGTTTTGATACAATATCA+AGG | + | chr5_3:51173641-51173660 | Msa0816670:CDS | 20.0% |
| !! | CAAAATCATTCTCAAAATAA+TGG | + | chr5_3:51173766-51173785 | Msa0816670:CDS | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_3:51173851-51173870 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_3:51173864-51173883 | None:intergenic | 20.0% |
| !!! | TTTTACATAGATTCTGTTTA+AGG | - | chr5_3:51173934-51173953 | None:intergenic | 20.0% |
| !! | GTAAAAGATTTATTATCTCA+AGG | + | chr5_3:51173948-51173967 | Msa0816670:CDS | 20.0% |
| !! | AAAAGATTTATTATCTCAAG+GGG | + | chr5_3:51173950-51173969 | Msa0816670:CDS | 20.0% |
| !!! | TTCACATTTCATTTTTGTTA+AGG | + | chr5_3:51174093-51174112 | Msa0816670:intron | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_3:51174116-51174135 | Msa0816670:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_3:51174163-51174182 | Msa0816670:intron | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_3:51174284-51174303 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAACATCCTAG+AGG | - | chr5_3:51174407-51174426 | None:intergenic | 20.0% |
| !! | TATGATATGATATGATACAA+GGG | - | chr5_3:51173575-51173594 | None:intergenic | 20.0% |
| !! | ATATGATATGATATGATACA+AGG | - | chr5_3:51173576-51173595 | None:intergenic | 20.0% |
| !! | TGATATTGTATCAAAACATA+AGG | - | chr5_3:51173641-51173660 | None:intergenic | 20.0% |
| !!! | TATGTTTTGATACAATATCA+AGG | + | chr5_3:51173641-51173660 | Msa0816670:CDS | 20.0% |
| !! | CAAAATCATTCTCAAAATAA+TGG | + | chr5_3:51173766-51173785 | Msa0816670:CDS | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_3:51173851-51173870 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_3:51173864-51173883 | None:intergenic | 20.0% |
| !!! | TTTTACATAGATTCTGTTTA+AGG | - | chr5_3:51173934-51173953 | None:intergenic | 20.0% |
| !! | GTAAAAGATTTATTATCTCA+AGG | + | chr5_3:51173948-51173967 | Msa0816670:CDS | 20.0% |
| !! | AAAAGATTTATTATCTCAAG+GGG | + | chr5_3:51173950-51173969 | Msa0816670:CDS | 20.0% |
| !!! | TTCACATTTCATTTTTGTTA+AGG | + | chr5_3:51174093-51174112 | Msa0816670:intron | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_3:51174116-51174135 | Msa0816670:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_3:51174163-51174182 | Msa0816670:intron | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_3:51174284-51174303 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAACATCCTAG+AGG | - | chr5_3:51174407-51174426 | None:intergenic | 20.0% |
| ! | TTCTCATACACTTAAAGATA+TGG | + | chr5_3:51173412-51173431 | Msa0816670:exon | 25.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_3:51173521-51173540 | None:intergenic | 25.0% |
| !!! | TTTTGCCCTTTTTTTTATTG+AGG | + | chr5_3:51173534-51173553 | Msa0816670:intron | 25.0% |
| !!! | TTTGCCCTTTTTTTTATTGA+GGG | + | chr5_3:51173535-51173554 | Msa0816670:intron | 25.0% |
| ! | GAATCCCTCAATAAAAAAAA+GGG | - | chr5_3:51173542-51173561 | None:intergenic | 25.0% |
| ! | TGAATCCCTCAATAAAAAAA+AGG | - | chr5_3:51173543-51173562 | None:intergenic | 25.0% |
| ! | CAATATTAATATAGGTGGAA+TGG | + | chr5_3:51173610-51173629 | Msa0816670:intron | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_3:51173728-51173747 | Msa0816670:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_3:51174208-51174227 | Msa0816670:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_3:51174356-51174375 | Msa0816670:three_prime_UTR | 25.0% |
| !! | TCTTTCTAGCAAGTATTAAA+GGG | + | chr5_3:51174357-51174376 | Msa0816670:three_prime_UTR | 25.0% |
| ! | GATAAATGTATGTTGTTACA+TGG | + | chr5_3:51174379-51174398 | Msa0816670:three_prime_UTR | 25.0% |
| ! | TTCTCATACACTTAAAGATA+TGG | + | chr5_3:51173412-51173431 | Msa0816670:exon | 25.0% |
| ! | GGCAAAATATATGAATGTAA+GGG | - | chr5_3:51173521-51173540 | None:intergenic | 25.0% |
| !!! | TTTTGCCCTTTTTTTTATTG+AGG | + | chr5_3:51173534-51173553 | Msa0816670:intron | 25.0% |
| !!! | TTTGCCCTTTTTTTTATTGA+GGG | + | chr5_3:51173535-51173554 | Msa0816670:intron | 25.0% |
| ! | GAATCCCTCAATAAAAAAAA+GGG | - | chr5_3:51173542-51173561 | None:intergenic | 25.0% |
| ! | TGAATCCCTCAATAAAAAAA+AGG | - | chr5_3:51173543-51173562 | None:intergenic | 25.0% |
| ! | CAATATTAATATAGGTGGAA+TGG | + | chr5_3:51173610-51173629 | Msa0816670:intron | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_3:51173728-51173747 | Msa0816670:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_3:51174208-51174227 | Msa0816670:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_3:51174356-51174375 | Msa0816670:three_prime_UTR | 25.0% |
| !! | TCTTTCTAGCAAGTATTAAA+GGG | + | chr5_3:51174357-51174376 | Msa0816670:three_prime_UTR | 25.0% |
| ! | GATAAATGTATGTTGTTACA+TGG | + | chr5_3:51174379-51174398 | Msa0816670:three_prime_UTR | 25.0% |
| ACACTTAAAGATATGGCAAT+TGG | + | chr5_3:51173419-51173438 | Msa0816670:exon | 30.0% | |
| CACTTAAAGATATGGCAATT+GGG | + | chr5_3:51173420-51173439 | Msa0816670:exon | 30.0% | |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_3:51173522-51173541 | None:intergenic | 30.0% | |
| TATTAATATAGGTGGAATGG+AGG | + | chr5_3:51173613-51173632 | Msa0816670:intron | 30.0% | |
| TAGAGGCAGAAATCATATAT+GGG | + | chr5_3:51173694-51173713 | Msa0816670:CDS | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_3:51173847-51173866 | None:intergenic | 30.0% | |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_3:51174055-51174074 | Msa0816670:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_3:51174211-51174230 | Msa0816670:CDS | 30.0% | |
| ACACTTAAAGATATGGCAAT+TGG | + | chr5_3:51173419-51173438 | Msa0816670:exon | 30.0% | |
| CACTTAAAGATATGGCAATT+GGG | + | chr5_3:51173420-51173439 | Msa0816670:exon | 30.0% | |
| GGGCAAAATATATGAATGTA+AGG | - | chr5_3:51173522-51173541 | None:intergenic | 30.0% | |
| TATTAATATAGGTGGAATGG+AGG | + | chr5_3:51173613-51173632 | Msa0816670:intron | 30.0% | |
| TAGAGGCAGAAATCATATAT+GGG | + | chr5_3:51173694-51173713 | Msa0816670:CDS | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_3:51173847-51173866 | None:intergenic | 30.0% | |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_3:51174055-51174074 | Msa0816670:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_3:51174211-51174230 | Msa0816670:CDS | 30.0% | |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_3:51173427-51173446 | Msa0816670:exon | 35.0% | |
| GTACATCTTGTGAAAGCAAA+AGG | + | chr5_3:51173452-51173471 | Msa0816670:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_3:51173478-51173497 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_3:51173476-51173495 | Msa0816670:CDS | 35.0% |
| GTAGAGGCAGAAATCATATA+TGG | + | chr5_3:51173693-51173712 | Msa0816670:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_3:51173800-51173819 | Msa0816670:CDS | 35.0% |
| AGATATGGCAATTGGGATAA+TGG | + | chr5_3:51173427-51173446 | Msa0816670:exon | 35.0% | |
| GTACATCTTGTGAAAGCAAA+AGG | + | chr5_3:51173452-51173471 | Msa0816670:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_3:51173478-51173497 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_3:51173476-51173495 | Msa0816670:CDS | 35.0% |
| GTAGAGGCAGAAATCATATA+TGG | + | chr5_3:51173693-51173712 | Msa0816670:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_3:51173800-51173819 | Msa0816670:CDS | 35.0% |
| ! | AATATCAAGGCCAAGAGCAT+AGG | + | chr5_3:51173654-51173673 | Msa0816670:CDS | 40.0% |
| TTATCTCAAGGGGTCCAAAA+TGG | + | chr5_3:51173960-51173979 | Msa0816670:CDS | 40.0% | |
| TATCTCAAGGGGTCCAAAAT+GGG | + | chr5_3:51173961-51173980 | Msa0816670:CDS | 40.0% | |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_3:51173999-51174018 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_3:51174002-51174021 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_3:51174031-51174050 | None:intergenic | 40.0% | |
| CTTTGTTGGAATTCATTCGC+AGG | + | chr5_3:51174177-51174196 | Msa0816670:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_3:51174215-51174234 | Msa0816670:CDS | 40.0% | |
| TGTTGTTACATGGAACCTCT+AGG | + | chr5_3:51174389-51174408 | Msa0816670:three_prime_UTR | 40.0% | |
| ! | AATATCAAGGCCAAGAGCAT+AGG | + | chr5_3:51173654-51173673 | Msa0816670:CDS | 40.0% |
| TTATCTCAAGGGGTCCAAAA+TGG | + | chr5_3:51173960-51173979 | Msa0816670:CDS | 40.0% | |
| TATCTCAAGGGGTCCAAAAT+GGG | + | chr5_3:51173961-51173980 | Msa0816670:CDS | 40.0% | |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_3:51173999-51174018 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_3:51174002-51174021 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_3:51174031-51174050 | None:intergenic | 40.0% | |
| CTTTGTTGGAATTCATTCGC+AGG | + | chr5_3:51174177-51174196 | Msa0816670:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_3:51174215-51174234 | Msa0816670:CDS | 40.0% | |
| TGTTGTTACATGGAACCTCT+AGG | + | chr5_3:51174389-51174408 | Msa0816670:three_prime_UTR | 40.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_3:51173831-51173850 | None:intergenic | 45.0% |
| ATCTCAAGGGGTCCAAAATG+GGG | + | chr5_3:51173962-51173981 | Msa0816670:CDS | 45.0% | |
| ! | GTAGCTTAGCAACCCCATTT+TGG | - | chr5_3:51173977-51173996 | None:intergenic | 45.0% |
| TGTTGGAATTCATTCGCAGG+TGG | + | chr5_3:51174180-51174199 | Msa0816670:intron | 45.0% | |
| AATTCATTCGCAGGTGGAAG+AGG | + | chr5_3:51174186-51174205 | Msa0816670:intron | 45.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_3:51173831-51173850 | None:intergenic | 45.0% |
| ATCTCAAGGGGTCCAAAATG+GGG | + | chr5_3:51173962-51173981 | Msa0816670:CDS | 45.0% | |
| ! | GTAGCTTAGCAACCCCATTT+TGG | - | chr5_3:51173977-51173996 | None:intergenic | 45.0% |
| TGTTGGAATTCATTCGCAGG+TGG | + | chr5_3:51174180-51174199 | Msa0816670:intron | 45.0% | |
| AATTCATTCGCAGGTGGAAG+AGG | + | chr5_3:51174186-51174205 | Msa0816670:intron | 45.0% | |
| !!! | TATTTTTACAATATTAATAT+AGG | + | chr5_3:51173602-51173621 | Msa0816670:intron | 5.0% |
| !!! | TATTTTTACAATATTAATAT+AGG | + | chr5_3:51173602-51173621 | Msa0816670:intron | 5.0% |
| TGCCTCTACCTTTAGCCACA+CGG | - | chr5_3:51173682-51173701 | None:intergenic | 50.0% | |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_3:51174020-51174039 | Msa0816670:CDS | 50.0% | |
| TGCCTCTACCTTTAGCCACA+CGG | - | chr5_3:51173682-51173701 | None:intergenic | 50.0% | |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_3:51174020-51174039 | Msa0816670:CDS | 50.0% | |
| CATAGGAGCCGTGTGGCTAA+AGG | + | chr5_3:51173671-51173690 | Msa0816670:CDS | 55.0% | |
| AGCCGTGTGGCTAAAGGTAG+AGG | + | chr5_3:51173677-51173696 | Msa0816670:CDS | 55.0% | |
| CATAGGAGCCGTGTGGCTAA+AGG | + | chr5_3:51173671-51173690 | Msa0816670:CDS | 55.0% | |
| AGCCGTGTGGCTAAAGGTAG+AGG | + | chr5_3:51173677-51173696 | Msa0816670:CDS | 55.0% | |
| CCACACGGCTCCTATGCTCT+TGG | - | chr5_3:51173667-51173686 | None:intergenic | 60.0% | |
| ! | CCAAGAGCATAGGAGCCGTG+TGG | + | chr5_3:51173664-51173683 | Msa0816670:CDS | 60.0% |
| CCACACGGCTCCTATGCTCT+TGG | - | chr5_3:51173667-51173686 | None:intergenic | 60.0% | |
| ! | CCAAGAGCATAGGAGCCGTG+TGG | + | chr5_3:51173664-51173683 | Msa0816670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 51173345 | 51174472 | 51173345 | ID=Msa0816670;Name=Msa0816670 |
| chr5_3 | mRNA | 51173345 | 51174472 | 51173345 | ID=Msa0816670-mRNA-1;Parent=Msa0816670;Name=Msa0816670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=86|1|1|1|1|1|4|208|158 |
| chr5_3 | exon | 51173345 | 51173497 | 51173345 | ID=Msa0816670-mRNA-1:exon:15328;Parent=Msa0816670-mRNA-1 |
| chr5_3 | exon | 51173624 | 51173831 | 51173624 | ID=Msa0816670-mRNA-1:exon:15329;Parent=Msa0816670-mRNA-1 |
| chr5_3 | exon | 51173941 | 51174076 | 51173941 | ID=Msa0816670-mRNA-1:exon:15330;Parent=Msa0816670-mRNA-1 |
| chr5_3 | exon | 51174199 | 51174472 | 51174199 | ID=Msa0816670-mRNA-1:exon:15331;Parent=Msa0816670-mRNA-1 |
| chr5_3 | five_prime_UTR | 51173345 | 51173430 | 51173345 | ID=Msa0816670-mRNA-1:five_prime_utr;Parent=Msa0816670-mRNA-1 |
| chr5_3 | CDS | 51173431 | 51173497 | 51173431 | ID=Msa0816670-mRNA-1:cds;Parent=Msa0816670-mRNA-1 |
| chr5_3 | CDS | 51173624 | 51173831 | 51173624 | ID=Msa0816670-mRNA-1:cds;Parent=Msa0816670-mRNA-1 |
| chr5_3 | CDS | 51173941 | 51174076 | 51173941 | ID=Msa0816670-mRNA-1:cds;Parent=Msa0816670-mRNA-1 |
| chr5_3 | CDS | 51174199 | 51174264 | 51174199 | ID=Msa0816670-mRNA-1:cds;Parent=Msa0816670-mRNA-1 |
| chr5_3 | three_prime_UTR | 51174265 | 51174472 | 51174265 | ID=Msa0816670-mRNA-1:three_prime_utr;Parent=Msa0816670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
