Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817250 | RHN57038.1 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817250 | sp|Q0WSN2|DAR2_ARATH | 64.648 | 512 | 149 | 9 | 8 | 491 | 21 | 528 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817250 | A0A396HX06 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0817250 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737810 | Msa0817250 | 0.913441 | 6.129740e-84 | -8.615850e-47 |
| Msa0817250 | Msa0817280 | 0.914387 | 2.034682e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817250 | MtrunA17_Chr5g0436051 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Msa0817250 | MtrunA17_Chr3g0112601 | 70.986 | 517 | 120 | 6 | 1 | 491 | 1 | 513 | 0.0 | 739 |
| Msa0817250 | MtrunA17_Chr1g0154501 | 50.731 | 479 | 205 | 8 | 32 | 490 | 1 | 468 | 3.53e-166 | 478 |
| Msa0817250 | MtrunA17_Chr8g0373781 | 49.813 | 536 | 187 | 10 | 32 | 490 | 1 | 531 | 7.26e-165 | 476 |
| Msa0817250 | MtrunA17_Chr5g0403301 | 56.357 | 291 | 99 | 3 | 207 | 490 | 37 | 306 | 3.80e-109 | 326 |
| Msa0817250 | MtrunA17_Chr5g0403261 | 37.228 | 368 | 137 | 8 | 32 | 307 | 1 | 366 | 2.95e-74 | 238 |
| Msa0817250 | MtrunA17_Chr5g0403271 | 64.706 | 153 | 49 | 1 | 343 | 490 | 1 | 153 | 1.58e-59 | 192 |
| Msa0817250 | MtrunA17_Chr5g0403291 | 57.576 | 66 | 28 | 0 | 141 | 206 | 382 | 447 | 1.48e-20 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817250 | AT2G39830.1 | 64.648 | 512 | 149 | 9 | 8 | 491 | 21 | 528 | 0.0 | 639 |
| Msa0817250 | AT2G39830.2 | 64.272 | 515 | 149 | 10 | 8 | 491 | 21 | 531 | 0.0 | 634 |
| Msa0817250 | AT2G39830.3 | 64.244 | 509 | 147 | 9 | 8 | 491 | 21 | 519 | 0.0 | 630 |
| Msa0817250 | AT2G39830.4 | 62.175 | 423 | 132 | 8 | 8 | 406 | 21 | 439 | 5.94e-179 | 509 |
| Msa0817250 | AT4G36860.1 | 59.145 | 421 | 144 | 5 | 92 | 490 | 139 | 553 | 2.30e-168 | 486 |
| Msa0817250 | AT4G36860.3 | 59.145 | 421 | 144 | 5 | 92 | 490 | 163 | 577 | 2.79e-168 | 487 |
| Msa0817250 | AT1G19270.1 | 46.154 | 533 | 213 | 7 | 32 | 491 | 1 | 532 | 1.00e-160 | 466 |
| Msa0817250 | AT1G19270.2 | 46.154 | 533 | 213 | 7 | 32 | 491 | 1 | 532 | 1.00e-160 | 466 |
| Msa0817250 | AT4G36860.2 | 58.075 | 322 | 109 | 4 | 92 | 393 | 139 | 454 | 6.40e-127 | 377 |
| Msa0817250 | AT5G66610.3 | 50.847 | 354 | 161 | 5 | 142 | 484 | 73 | 424 | 4.82e-115 | 346 |
| Msa0817250 | AT5G66620.1 | 49.722 | 360 | 159 | 5 | 142 | 483 | 285 | 640 | 8.95e-115 | 352 |
| Msa0817250 | AT5G66620.3 | 42.418 | 455 | 231 | 7 | 56 | 483 | 181 | 631 | 2.26e-114 | 351 |
| Msa0817250 | AT5G66620.4 | 42.418 | 455 | 231 | 7 | 56 | 483 | 181 | 631 | 2.26e-114 | 351 |
| Msa0817250 | AT5G66610.1 | 50.847 | 354 | 161 | 5 | 142 | 484 | 200 | 551 | 4.05e-114 | 348 |
| Msa0817250 | AT5G66610.2 | 47.244 | 381 | 161 | 6 | 142 | 484 | 200 | 578 | 2.37e-108 | 334 |
| Msa0817250 | AT5G66630.1 | 46.667 | 360 | 167 | 7 | 142 | 483 | 346 | 698 | 1.88e-102 | 322 |
| Msa0817250 | AT5G66640.1 | 45.869 | 351 | 160 | 6 | 161 | 483 | 90 | 438 | 7.75e-94 | 292 |
| Msa0817250 | AT5G66640.7 | 45.869 | 351 | 160 | 6 | 161 | 483 | 90 | 438 | 7.75e-94 | 292 |
| Msa0817250 | AT5G17890.1 | 47.527 | 364 | 166 | 7 | 143 | 483 | 1240 | 1601 | 2.24e-93 | 310 |
| Msa0817250 | AT5G66640.4 | 45.869 | 351 | 160 | 6 | 161 | 483 | 121 | 469 | 3.35e-93 | 291 |
| Msa0817250 | AT5G66640.5 | 45.869 | 351 | 160 | 6 | 161 | 483 | 122 | 470 | 3.56e-93 | 291 |
| Msa0817250 | AT5G66640.3 | 46.769 | 325 | 145 | 5 | 187 | 483 | 7 | 331 | 5.33e-90 | 278 |
| Msa0817250 | AT5G66640.2 | 41.595 | 351 | 171 | 8 | 161 | 483 | 121 | 465 | 9.62e-77 | 249 |
| Msa0817250 | AT5G66640.6 | 41.311 | 351 | 172 | 7 | 161 | 483 | 122 | 466 | 9.67e-77 | 249 |
| Msa0817250 | AT5G66620.2 | 45.291 | 223 | 107 | 4 | 142 | 353 | 276 | 494 | 1.71e-62 | 212 |
Find 127 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGCAAACTTCACATTT+TGG | 0.182828 | 5_3:-52229697 | None:intergenic |
| AGGCATAAACCTCTTGTTTC+TGG | 0.186251 | 5_3:-52230802 | None:intergenic |
| AATATGTGTATATACCTTTA+AGG | 0.205624 | 5_3:-52231300 | None:intergenic |
| GTCTCATGTTGAAAACAAAT+TGG | 0.214527 | 5_3:+52231545 | Msa0817250:CDS |
| TTAAAACAAGATTTGTGATA+TGG | 0.216060 | 5_3:-52229661 | None:intergenic |
| TCTTCCCTCACTCTCCCTTA+TGG | 0.245389 | 5_3:+52227634 | Msa0817250:exon |
| CTGTATTCATTGGGATAAAA+TGG | 0.256062 | 5_3:-52229314 | None:intergenic |
| AATGAAGCTGTTAATAAATA+TGG | 0.258522 | 5_3:+52231636 | Msa0817250:CDS |
| ACAGCAATTCTTGTTCTATA+TGG | 0.261118 | 5_3:+52231050 | Msa0817250:CDS |
| CATGAGATGGACAATACTTT+TGG | 0.265205 | 5_3:-52230313 | None:intergenic |
| CATGCATGGTTACGCCTTAA+AGG | 0.286050 | 5_3:+52231286 | Msa0817250:CDS |
| AGTATAGATGCCACCCCTTT+TGG | 0.293022 | 5_3:+52230288 | Msa0817250:intron |
| GGAGAAAATGATGAAGATTA+TGG | 0.298017 | 5_3:+52229236 | Msa0817250:CDS |
| AATGATTCTTCTCCAGCTTA+TGG | 0.306927 | 5_3:+52231594 | Msa0817250:CDS |
| CTTTCTCATCCATGTATATA+TGG | 0.313577 | 5_3:+52227683 | Msa0817250:CDS |
| ATTGGAGGCCATAGACTTAT+AGG | 0.316467 | 5_3:+52230984 | Msa0817250:CDS |
| GAACACATGTTCTCTAAGTA+TGG | 0.327365 | 5_3:+52231714 | Msa0817250:three_prime_UTR |
| AAGATTTCACCTGTATTCAT+TGG | 0.335163 | 5_3:-52229324 | None:intergenic |
| AACTACCTCGCGCTCGGTAA+TGG | 0.338884 | 5_3:-52229531 | None:intergenic |
| GAAAGTCTGGTTTCATGAAA+TGG | 0.348540 | 5_3:+52228244 | Msa0817250:CDS |
| AACAAGAGGTTTATGCCTTT+CGG | 0.351720 | 5_3:+52230807 | Msa0817250:CDS |
| ACGACCACTCCTTCCTCTAT+TGG | 0.353168 | 5_3:-52228292 | None:intergenic |
| GTGCATGGAATCTGCTATAA+TGG | 0.356084 | 5_3:+52230546 | Msa0817250:CDS |
| ACTACCTCGCGCTCGGTAAT+GGG | 0.362527 | 5_3:-52229530 | None:intergenic |
| ATAATCTATGGAAATTGTTT+AGG | 0.366827 | 5_3:+52229452 | Msa0817250:CDS |
| AGTCTATGGCCTCCAATTCT+TGG | 0.369796 | 5_3:-52230978 | None:intergenic |
| CAGAAGGAGAAAGAGGATTT+AGG | 0.374040 | 5_3:+52229047 | Msa0817250:CDS |
| GCACTTAATGATGCTATTGT+TGG | 0.375277 | 5_3:+52230673 | Msa0817250:CDS |
| ATGAAACCAGACTTTCTCTC+TGG | 0.376624 | 5_3:-52228237 | None:intergenic |
| TTCTCATGCCTATAAGTCTA+TGG | 0.380772 | 5_3:-52230992 | None:intergenic |
| AACCTCTTGTTTCTGGCAAA+TGG | 0.381781 | 5_3:-52230795 | None:intergenic |
| AATAATAAGCTAAATACATT+AGG | 0.385158 | 5_3:-52231924 | None:intergenic |
| CATTAGCCCATCAAGGATAT+AGG | 0.386946 | 5_3:+52229207 | Msa0817250:intron |
| ATTGTTCTACAAGTGACTAT+TGG | 0.392656 | 5_3:+52231764 | Msa0817250:three_prime_UTR |
| ATGGCATGCAGGTTACTAAC+AGG | 0.396063 | 5_3:+52231238 | Msa0817250:intron |
| CTCGAACATATTCGTTTGAC+TGG | 0.400738 | 5_3:+52231672 | Msa0817250:CDS |
| CATAATAATCTCTGATTGAA+TGG | 0.404836 | 5_3:-52230594 | None:intergenic |
| CTGTAGTTGTGAAAGATTAG+AGG | 0.408619 | 5_3:+52230358 | Msa0817250:CDS |
| TGCAATCAGGAGATAATCTA+TGG | 0.410658 | 5_3:+52229440 | Msa0817250:CDS |
| AGGCTCGAACAACTTCTATA+TGG | 0.413581 | 5_3:+52231842 | Msa0817250:three_prime_UTR |
| TGTTGTTTCAGATTCATAGA+AGG | 0.415721 | 5_3:+52230955 | Msa0817250:intron |
| TTGTTTACCAAAGCTCTAGA+TGG | 0.420805 | 5_3:-52228357 | None:intergenic |
| GAATCTGCTATAATGGATAC+TGG | 0.421279 | 5_3:+52230553 | Msa0817250:CDS |
| ATTCATAGAAGGCCAAGAAT+TGG | 0.426756 | 5_3:+52230966 | Msa0817250:CDS |
| AGATTTCACCTGTATTCATT+GGG | 0.428419 | 5_3:-52229323 | None:intergenic |
| TTATCCAACTTGGTCTCTTG+TGG | 0.433491 | 5_3:+52231793 | Msa0817250:three_prime_UTR |
| CATATGCCTTCCTCTACTTC+AGG | 0.435073 | 5_3:-52231411 | None:intergenic |
| TTCAAAGGTGGGTCCAATAG+AGG | 0.438064 | 5_3:+52228279 | Msa0817250:CDS |
| ATCAGAAGAAGGAGCCATAA+GGG | 0.441052 | 5_3:-52227648 | None:intergenic |
| TCAATCAGAGATTATTATGA+AGG | 0.445893 | 5_3:+52230598 | Msa0817250:CDS |
| CAAGACATGCCTTCCTCTGC+AGG | 0.450171 | 5_3:-52228327 | None:intergenic |
| TCTTCTCCAGCTTATGGTGG+TGG | 0.452845 | 5_3:+52231600 | Msa0817250:CDS |
| TCTCATGTTGAAAACAAATT+GGG | 0.452858 | 5_3:+52231546 | Msa0817250:CDS |
| GCGTGCTCCATCTAGAGCTT+TGG | 0.454192 | 5_3:+52228350 | Msa0817250:CDS |
| TAAAATGGTGCAGGAGCATA+AGG | 0.458370 | 5_3:-52229299 | None:intergenic |
| TCACACCCAGAGAGAAAGTC+TGG | 0.460029 | 5_3:+52228231 | Msa0817250:CDS |
| TAAGGGAGAGTGAGGGAAGA+AGG | 0.460899 | 5_3:-52227631 | None:intergenic |
| AGACTTTGCACCTTTCTTTG+AGG | 0.470152 | 5_3:-52231526 | None:intergenic |
| GAGTGGCATCGAAAGCAGTC+TGG | 0.476246 | 5_3:-52229497 | None:intergenic |
| ATGCAATGAGAGTTTGTTGC+TGG | 0.480588 | 5_3:-52231474 | None:intergenic |
| TGGAAATTGTTTAGGCTGCA+TGG | 0.497463 | 5_3:+52229460 | Msa0817250:CDS |
| GATCAGAAGAAGGAGCCATA+AGG | 0.497642 | 5_3:-52227649 | None:intergenic |
| GAAGATATGAAGAGACCAAA+TGG | 0.499622 | 5_3:+52229095 | Msa0817250:CDS |
| TTCTCTTTCAACAAGAAGCA+TGG | 0.501914 | 5_3:-52230650 | None:intergenic |
| CTAAAACCACCACCATAAGC+TGG | 0.509878 | 5_3:-52231606 | None:intergenic |
| CTGCAGAGGAAGGCATGTCT+TGG | 0.516391 | 5_3:+52228328 | Msa0817250:CDS |
| TAGAGCTCAGAAGGAGAAAG+AGG | 0.516816 | 5_3:+52229040 | Msa0817250:CDS |
| ACCATGCATGCATCAACTCA+TGG | 0.520688 | 5_3:-52231273 | None:intergenic |
| TGATCGTGCTAGAGCTCAGA+AGG | 0.527771 | 5_3:+52229031 | Msa0817250:CDS |
| TTATTTGCATTAGCCCATCA+AGG | 0.527904 | 5_3:+52229200 | Msa0817250:intron |
| TCTCTGATTGAATGGTATAG+AGG | 0.533543 | 5_3:-52230586 | None:intergenic |
| AGGAGCCATAAGGGAGAGTG+AGG | 0.534142 | 5_3:-52227639 | None:intergenic |
| GTGGATTGCTTCAAAACTCA+AGG | 0.534190 | 5_3:+52231812 | Msa0817250:three_prime_UTR |
| GGATCAAACTACCTCGCGCT+CGG | 0.536169 | 5_3:-52229537 | None:intergenic |
| GCTGCTTCTTCCTCAAAGAA+AGG | 0.536522 | 5_3:+52231516 | Msa0817250:CDS |
| AGAGTGAGGGAAGAAGGAAG+AGG | 0.536709 | 5_3:-52227625 | None:intergenic |
| CATAGAAGGCCAAGAATTGG+AGG | 0.541624 | 5_3:+52230969 | Msa0817250:CDS |
| GTCAGGTTCTGTCATATATG+TGG | 0.544593 | 5_3:+52231433 | Msa0817250:CDS |
| TCTCTTTCAACAAGAAGCAT+GGG | 0.545613 | 5_3:-52230649 | None:intergenic |
| AAGCTTGTGCTTAGAGTGCA+TGG | 0.547235 | 5_3:+52230531 | Msa0817250:CDS |
| CCCATCAAGGATATAGGTGG+GGG | 0.548766 | 5_3:+52229213 | Msa0817250:CDS |
| CACCATTTGCCAGAAACAAG+AGG | 0.548780 | 5_3:+52230793 | Msa0817250:CDS |
| TCATTGGGATAAAATGGTGC+AGG | 0.553987 | 5_3:-52229308 | None:intergenic |
| TGAAACCAGACTTTCTCTCT+GGG | 0.553994 | 5_3:-52228236 | None:intergenic |
| CATTATGATCCTGCAGAGGA+AGG | 0.555932 | 5_3:+52228318 | Msa0817250:CDS |
| AACATGTGTTCTTATTACAC+AGG | 0.561919 | 5_3:-52231702 | None:intergenic |
| GATTCTTCTCCAGCTTATGG+TGG | 0.562395 | 5_3:+52231597 | Msa0817250:CDS |
| AGTAGAGGAAGGCATATGTC+AGG | 0.562990 | 5_3:+52231416 | Msa0817250:CDS |
| CTATAGTATTTCGTATTCCG+AGG | 0.568127 | 5_3:-52230493 | None:intergenic |
| CCATGCATGCATCAACTCAT+GGG | 0.575521 | 5_3:-52231272 | None:intergenic |
| AGCCCATCAAGGATATAGGT+GGG | 0.576893 | 5_3:+52229211 | Msa0817250:intron |
| CCCATGAGTTGATGCATGCA+TGG | 0.580940 | 5_3:+52231272 | Msa0817250:CDS |
| AGCAACAAACTCTCATTGCA+TGG | 0.581985 | 5_3:+52231476 | Msa0817250:CDS |
| TCACAGTTTGCTCTTCCGAA+AGG | 0.583186 | 5_3:-52230822 | None:intergenic |
| CTGAAGAAAGTGACATTGCA+TGG | 0.583861 | 5_3:-52229070 | None:intergenic |
| AAATGATGAAGATTATGGAA+AGG | 0.584158 | 5_3:+52229241 | Msa0817250:CDS |
| GTATTGTCATATTCATGAGA+TGG | 0.585321 | 5_3:-52230326 | None:intergenic |
| GCCCATCAAGGATATAGGTG+GGG | 0.591148 | 5_3:+52229212 | Msa0817250:intron |
| CAATCTCAGTCCTGAAGTAG+AGG | 0.592599 | 5_3:+52231401 | Msa0817250:CDS |
| TGAGGAAGAAGCAGCAGCTG+TGG | 0.594186 | 5_3:-52231508 | None:intergenic |
| TAGCCCATCAAGGATATAGG+TGG | 0.597899 | 5_3:+52229210 | Msa0817250:intron |
| TGATTGATATGATCAGAAGA+AGG | 0.604305 | 5_3:-52227659 | None:intergenic |
| CATCAAGGATATAGGTGGGG+GGG | 0.609524 | 5_3:+52229215 | Msa0817250:CDS |
| CATTGAACAGAAGACTATGT+GGG | 0.609543 | 5_3:+52229414 | Msa0817250:intron |
| TCAAAACTCAAGGCAGAGAG+AGG | 0.611009 | 5_3:+52231822 | Msa0817250:three_prime_UTR |
| AATACTATAGACTCGAGGAC+GGG | 0.611229 | 5_3:+52230506 | Msa0817250:CDS |
| CTCAGTCCTGAAGTAGAGGA+AGG | 0.619865 | 5_3:+52231405 | Msa0817250:CDS |
| TTGTACTCTGACATCCTCAC+AGG | 0.622459 | 5_3:-52231866 | None:intergenic |
| CAATCCACAAGAGACCAAGT+TGG | 0.625624 | 5_3:-52231797 | None:intergenic |
| AATGGTGCAGGAGCATAAGG+AGG | 0.625823 | 5_3:-52229296 | None:intergenic |
| AGTAAAGTACCATATATACA+TGG | 0.626223 | 5_3:-52227692 | None:intergenic |
| TTCTCCCATTACCGAGCGCG+AGG | 0.628667 | 5_3:+52229526 | Msa0817250:CDS |
| AAGGTGGGTCCAATAGAGGA+AGG | 0.645391 | 5_3:+52228283 | Msa0817250:CDS |
| GGAGCCATAAGGGAGAGTGA+GGG | 0.648423 | 5_3:-52227638 | None:intergenic |
| ATTGAACAGAAGACTATGTG+GGG | 0.648467 | 5_3:+52229415 | Msa0817250:intron |
| AAATACTATAGACTCGAGGA+CGG | 0.654015 | 5_3:+52230505 | Msa0817250:CDS |
| GCATTGAACAGAAGACTATG+TGG | 0.658253 | 5_3:+52229413 | Msa0817250:intron |
| TTGTTCTATATGGTCTACCA+AGG | 0.659611 | 5_3:+52231060 | Msa0817250:CDS |
| AACTTCTATATGGTCCTGTG+AGG | 0.664585 | 5_3:+52231852 | Msa0817250:three_prime_UTR |
| ACATGTGTTCTTATTACACA+GGG | 0.664721 | 5_3:-52231701 | None:intergenic |
| GGGTCCAATAGAGGAAGGAG+TGG | 0.672837 | 5_3:+52228288 | Msa0817250:CDS |
| ATGGTGCAGGAGCATAAGGA+GGG | 0.678829 | 5_3:-52229295 | None:intergenic |
| CCATCAAGGATATAGGTGGG+GGG | 0.680331 | 5_3:+52229214 | Msa0817250:CDS |
| TAATGGGAGAATGACAAGAG+TGG | 0.685159 | 5_3:-52229514 | None:intergenic |
| TACGAAATACTATAGACTCG+AGG | 0.695310 | 5_3:+52230501 | Msa0817250:CDS |
| TCATCATTATGATCCTGCAG+AGG | 0.695986 | 5_3:+52228314 | Msa0817250:CDS |
| TTGAACAGAAGACTATGTGG+GGG | 0.724066 | 5_3:+52229416 | Msa0817250:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATAATTGAATATAATA+TGG | - | chr5_3:52228936-52228955 | None:intergenic | 10.0% |
| !!! | TTTTGTAATTTTTCTTAAGT+GGG | - | chr5_3:52227825-52227844 | None:intergenic | 15.0% |
| !!! | TTTTTGTAATTTTTCTTAAG+TGG | - | chr5_3:52227826-52227845 | None:intergenic | 15.0% |
| !!! | TTTCATTTGATTTCATTAAA+AGG | + | chr5_3:52227886-52227905 | Msa0817250:intron | 15.0% |
| !!! | TTCATTTGATTTCATTAAAA+GGG | + | chr5_3:52227887-52227906 | Msa0817250:intron | 15.0% |
| !!! | ATACTTTTTTGACTTATTTT+TGG | + | chr5_3:52228793-52228812 | Msa0817250:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGACTCA+AGG | + | chr5_3:52228970-52228989 | Msa0817250:intron | 15.0% |
| !!! | ATTTTGCTATCATTTATAAT+TGG | + | chr5_3:52229375-52229394 | Msa0817250:intron | 15.0% |
| !! | TATAGATTAAAGTTATTCAT+TGG | - | chr5_3:52230437-52230456 | None:intergenic | 15.0% |
| !!! | TAAAATTGAAATGTTTTTAC+CGG | + | chr5_3:52231207-52231226 | Msa0817250:intron | 15.0% |
| !! | AATAATAAGCTAAATACATT+AGG | - | chr5_3:52231927-52231946 | None:intergenic | 15.0% |
| !! | AGTTCAAATAATAGTTTCAT+GGG | - | chr5_3:52227859-52227878 | None:intergenic | 20.0% |
| !! | AAGTTCAAATAATAGTTTCA+TGG | - | chr5_3:52227860-52227879 | None:intergenic | 20.0% |
| !!! | TTTTCATATGAATCCAAAAA+AGG | + | chr5_3:52227956-52227975 | Msa0817250:intron | 20.0% |
| !! | CTTATTGAATCATGAAAATT+TGG | + | chr5_3:52228184-52228203 | Msa0817250:intron | 20.0% |
| !! | GTATTATTTGGACTAATAAT+TGG | + | chr5_3:52228861-52228880 | Msa0817250:intron | 20.0% |
| !! | ACAATACTATTGATGTAATT+AGG | + | chr5_3:52229007-52229026 | Msa0817250:intron | 20.0% |
| !! | ATAATCTATGGAAATTGTTT+AGG | + | chr5_3:52229452-52229471 | Msa0817250:CDS | 20.0% |
| !! | TTAAAACAAGATTTGTGATA+TGG | - | chr5_3:52229664-52229683 | None:intergenic | 20.0% |
| !! | AATTATGAAACAATTTAGAG+TGG | - | chr5_3:52230398-52230417 | None:intergenic | 20.0% |
| !! | AACAATATAGAGTAATTAAG+AGG | - | chr5_3:52230759-52230778 | None:intergenic | 20.0% |
| !!! | ATGATCTACAATTTTTCATA+AGG | - | chr5_3:52231132-52231151 | None:intergenic | 20.0% |
| !!! | TAAATTGATGATTCACTAAA+TGG | - | chr5_3:52231163-52231182 | None:intergenic | 20.0% |
| !! | AATATGTGTATATACCTTTA+AGG | - | chr5_3:52231303-52231322 | None:intergenic | 20.0% |
| !! | AATGAAGCTGTTAATAAATA+TGG | + | chr5_3:52231636-52231655 | Msa0817250:CDS | 20.0% |
| !! | AGTAAAGTACCATATATACA+TGG | - | chr5_3:52227695-52227714 | None:intergenic | 25.0% |
| ! | TTTGAATATCAAAGTGCATA+AGG | - | chr5_3:52227773-52227792 | None:intergenic | 25.0% |
| ! | TTGGAGTAAAATTGTGTAAA+GGG | - | chr5_3:52227802-52227821 | None:intergenic | 25.0% |
| ! | ATGAATGTAATAACATGTGT+CGG | + | chr5_3:52228088-52228107 | Msa0817250:intron | 25.0% |
| ! | ATTGAATCATGAAAATTTGG+TGG | + | chr5_3:52228187-52228206 | Msa0817250:intron | 25.0% |
| ! | TGAAGAAAAATGAAATTGAG+TGG | - | chr5_3:52228385-52228404 | None:intergenic | 25.0% |
| !!! | TGATTCTTGTTTGTTATGAA+TGG | + | chr5_3:52228421-52228440 | Msa0817250:intron | 25.0% |
| !!! | TGTGTGATTTTTTAGAAACA+TGG | + | chr5_3:52228556-52228575 | Msa0817250:intron | 25.0% |
| ! | CTTATTATGTACTAAATCCA+CGG | + | chr5_3:52228626-52228645 | Msa0817250:intron | 25.0% |
| !! | ATTATTTGGTGATTTGTAAG+AGG | - | chr5_3:52228656-52228675 | None:intergenic | 25.0% |
| ! | GCGTTAACATAGTAATTATT+TGG | - | chr5_3:52228670-52228689 | None:intergenic | 25.0% |
| !!! | AGTATACTTTCTAAAGTTTG+AGG | - | chr5_3:52228778-52228797 | None:intergenic | 25.0% |
| ! | AAGTGAGACTTAGTATTATT+TGG | + | chr5_3:52228849-52228868 | Msa0817250:intron | 25.0% |
| ! | AAAATTAAGTACCAACCATT+TGG | - | chr5_3:52229113-52229132 | None:intergenic | 25.0% |
| ! | AAATGATGAAGATTATGGAA+AGG | + | chr5_3:52229241-52229260 | Msa0817250:CDS | 25.0% |
| ! | CAACAAACAAAAAAATAGTC+AGG | - | chr5_3:52229613-52229632 | None:intergenic | 25.0% |
| ! | CTAATGTCATAGTTCTTATA+AGG | - | chr5_3:52229800-52229819 | None:intergenic | 25.0% |
| ! | GAAGTAAATTATCAATGAGA+GGG | - | chr5_3:52229900-52229919 | None:intergenic | 25.0% |
| ! | TGAAGTAAATTATCAATGAG+AGG | - | chr5_3:52229901-52229920 | None:intergenic | 25.0% |
| !!! | AAGTTATTCATTGGTTGTTT+TGG | - | chr5_3:52230428-52230447 | None:intergenic | 25.0% |
| ! | CATAATAATCTCTGATTGAA+TGG | - | chr5_3:52230597-52230616 | None:intergenic | 25.0% |
| ! | TCAATCAGAGATTATTATGA+AGG | + | chr5_3:52230598-52230617 | Msa0817250:CDS | 25.0% |
| ! | TGTGTTAAAATATCATACAC+TGG | - | chr5_3:52230848-52230867 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTGATTAGAATG+TGG | + | chr5_3:52230876-52230895 | Msa0817250:intron | 25.0% |
| !!! | CATTTTCTTATTAGCTTTTG+AGG | - | chr5_3:52231023-52231042 | None:intergenic | 25.0% |
| ! | TTTCATAAGGTAATTTCTGA+GGG | - | chr5_3:52231119-52231138 | None:intergenic | 25.0% |
| !! | TTTTCATAAGGTAATTTCTG+AGG | - | chr5_3:52231120-52231139 | None:intergenic | 25.0% |
| !!! | GTTTTTACCGGATATTTTTA+TGG | + | chr5_3:52231219-52231238 | Msa0817250:intron | 25.0% |
| !! | CATATTTTTCATCCTTATGT+TGG | + | chr5_3:52231317-52231336 | Msa0817250:intron | 25.0% |
| ! | TCTCATGTTGAAAACAAATT+GGG | + | chr5_3:52231546-52231565 | Msa0817250:CDS | 25.0% |
| TGATTGATATGATCAGAAGA+AGG | - | chr5_3:52227662-52227681 | None:intergenic | 30.0% | |
| CTTTCTCATCCATGTATATA+TGG | + | chr5_3:52227683-52227702 | Msa0817250:CDS | 30.0% | |
| AGAAAAAGAGAAAAGAGAGA+AGG | - | chr5_3:52227720-52227739 | None:intergenic | 30.0% | |
| GTTGGAGTAAAATTGTGTAA+AGG | - | chr5_3:52227803-52227822 | None:intergenic | 30.0% | |
| ! | GTAATTTTTCTTAAGTGGGT+TGG | - | chr5_3:52227821-52227840 | None:intergenic | 30.0% |
| !!! | CTAGACAATCATACCTTTTT+TGG | - | chr5_3:52227972-52227991 | None:intergenic | 30.0% |
| TTTGATGTTTGTGTTTGTGA+CGG | - | chr5_3:52228017-52228036 | None:intergenic | 30.0% | |
| ACAAACACAAACATCAAACA+TGG | + | chr5_3:52228019-52228038 | Msa0817250:intron | 30.0% | |
| ! | TTAGTAAGCTTTTCAAAGGT+GGG | + | chr5_3:52228268-52228287 | Msa0817250:CDS | 30.0% |
| !! | TTCTTGTTTGTTATGAATGG+AGG | + | chr5_3:52228424-52228443 | Msa0817250:intron | 30.0% |
| TGTTGGAACTTATTGAATGT+TGG | - | chr5_3:52228534-52228553 | None:intergenic | 30.0% | |
| CTAAAAAATCACACACATGT+TGG | - | chr5_3:52228551-52228570 | None:intergenic | 30.0% | |
| !!! | GTGATTTTTTAGAAACATGG+TGG | + | chr5_3:52228559-52228578 | Msa0817250:intron | 30.0% |
| TTCATCTTGATGAGATCAAT+AGG | - | chr5_3:52228831-52228850 | None:intergenic | 30.0% | |
| GGAGAAAATGATGAAGATTA+TGG | + | chr5_3:52229236-52229255 | Msa0817250:CDS | 30.0% | |
| CTGTATTCATTGGGATAAAA+TGG | - | chr5_3:52229317-52229336 | None:intergenic | 30.0% | |
| ! | CATTTTATCCCAATGAATAC+AGG | + | chr5_3:52229315-52229334 | Msa0817250:CDS | 30.0% |
| AGATTTCACCTGTATTCATT+GGG | - | chr5_3:52229326-52229345 | None:intergenic | 30.0% | |
| AAGATTTCACCTGTATTCAT+TGG | - | chr5_3:52229327-52229346 | None:intergenic | 30.0% | |
| GATCTCAAAATCTCATAAAG+AGG | - | chr5_3:52229561-52229580 | None:intergenic | 30.0% | |
| GGAAGATTAATCTTACAAAC+TGG | - | chr5_3:52229720-52229739 | None:intergenic | 30.0% | |
| AGAATAACTTGAGTAAGCAA+AGG | - | chr5_3:52229741-52229760 | None:intergenic | 30.0% | |
| !! | TTCAAAAGTCCAGCTTTATT+CGG | - | chr5_3:52229857-52229876 | None:intergenic | 30.0% |
| AATTATCAATGAGAGGGAAA+TGG | - | chr5_3:52229894-52229913 | None:intergenic | 30.0% | |
| !!! | TAAGTTGTTTTTCGCAAACA+GGG | - | chr5_3:52229993-52230012 | None:intergenic | 30.0% |
| !!! | TTAAGTTGTTTTTCGCAAAC+AGG | - | chr5_3:52229994-52230013 | None:intergenic | 30.0% |
| TTGTATAAACTCTACCAAAC+AGG | + | chr5_3:52230151-52230170 | Msa0817250:intron | 30.0% | |
| TCAAAAAAGCTAGTCAAAAC+AGG | + | chr5_3:52230199-52230218 | Msa0817250:intron | 30.0% | |
| ! | ATGAGATGGACAATACTTTT+GGG | - | chr5_3:52230315-52230334 | None:intergenic | 30.0% |
| GTATTGTCATATTCATGAGA+TGG | - | chr5_3:52230329-52230348 | None:intergenic | 30.0% | |
| !! | TACTCTATATTGTTTCTGTC+AGG | + | chr5_3:52230765-52230784 | Msa0817250:intron | 30.0% |
| !! | ACTCTATATTGTTTCTGTCA+GGG | + | chr5_3:52230766-52230785 | Msa0817250:intron | 30.0% |
| !! | TGTTGTTTCAGATTCATAGA+AGG | + | chr5_3:52230955-52230974 | Msa0817250:intron | 30.0% |
| ACAGCAATTCTTGTTCTATA+TGG | + | chr5_3:52231050-52231069 | Msa0817250:CDS | 30.0% | |
| TTCATAAGGTAATTTCTGAG+GGG | - | chr5_3:52231118-52231137 | None:intergenic | 30.0% | |
| TTTAGTGCTTGAAATAGAAC+AGG | + | chr5_3:52231179-52231198 | Msa0817250:intron | 30.0% | |
| CTTGTTCATCTTGAAAATGT+AGG | + | chr5_3:52231372-52231391 | Msa0817250:intron | 30.0% | |
| GTCTCATGTTGAAAACAAAT+TGG | + | chr5_3:52231545-52231564 | Msa0817250:CDS | 30.0% | |
| ACATGTGTTCTTATTACACA+GGG | - | chr5_3:52231704-52231723 | None:intergenic | 30.0% | |
| AACATGTGTTCTTATTACAC+AGG | - | chr5_3:52231705-52231724 | None:intergenic | 30.0% | |
| ATTGTTCTACAAGTGACTAT+TGG | + | chr5_3:52231764-52231783 | Msa0817250:three_prime_UTR | 30.0% | |
| !!! | TTGGTCTTTTTTATCCAACT+TGG | + | chr5_3:52231783-52231802 | Msa0817250:three_prime_UTR | 30.0% |
| GGTGTTTCATGTAAGTAACA+TGG | - | chr5_3:52227996-52228015 | None:intergenic | 35.0% | |
| GTTTGTGATCACTATTCAAG+AGG | + | chr5_3:52228150-52228169 | Msa0817250:intron | 35.0% | |
| !! | ATGAAAATTTGGTGGTGATC+AGG | + | chr5_3:52228195-52228214 | Msa0817250:intron | 35.0% |
| !! | TGAAAATTTGGTGGTGATCA+GGG | + | chr5_3:52228196-52228215 | Msa0817250:intron | 35.0% |
| ! | GAAAGTCTGGTTTCATGAAA+TGG | + | chr5_3:52228244-52228263 | Msa0817250:CDS | 35.0% |
| ! | TGGCTTAGTAAGCTTTTCAA+AGG | + | chr5_3:52228264-52228283 | Msa0817250:CDS | 35.0% |
| ! | CTTAGTAAGCTTTTCAAAGG+TGG | + | chr5_3:52228267-52228286 | Msa0817250:CDS | 35.0% |
| !! | TTGTTTACCAAAGCTCTAGA+TGG | - | chr5_3:52228360-52228379 | None:intergenic | 35.0% |
| GAAACATATGTGCAACTAAG+GGG | - | chr5_3:52228512-52228531 | None:intergenic | 35.0% | |
| GGAAACATATGTGCAACTAA+GGG | - | chr5_3:52228513-52228532 | None:intergenic | 35.0% | |
| TGGAAACATATGTGCAACTA+AGG | - | chr5_3:52228514-52228533 | None:intergenic | 35.0% | |
| TATGTTAACGCATTCTCTAG+TGG | + | chr5_3:52228679-52228698 | Msa0817250:intron | 35.0% | |
| GAAGATATGAAGAGACCAAA+TGG | + | chr5_3:52229095-52229114 | Msa0817250:CDS | 35.0% | |
| ATATGAAGAGACCAAATGGT+TGG | + | chr5_3:52229099-52229118 | Msa0817250:intron | 35.0% | |
| !!! | AAAAGTGCTTTTTGCTCACT+TGG | + | chr5_3:52229138-52229157 | Msa0817250:intron | 35.0% |
| TTATTTGCATTAGCCCATCA+AGG | + | chr5_3:52229200-52229219 | Msa0817250:intron | 35.0% | |
| !! | TAATTGGTAATGTGTGTGTG+TGG | + | chr5_3:52229391-52229410 | Msa0817250:intron | 35.0% |
| CATTGAACAGAAGACTATGT+GGG | + | chr5_3:52229414-52229433 | Msa0817250:intron | 35.0% | |
| ATTGAACAGAAGACTATGTG+GGG | + | chr5_3:52229415-52229434 | Msa0817250:intron | 35.0% | |
| TGCAATCAGGAGATAATCTA+TGG | + | chr5_3:52229440-52229459 | Msa0817250:CDS | 35.0% | |
| ! | TGATCCAAGTTTTCTTTGTC+AGG | + | chr5_3:52229631-52229650 | Msa0817250:intron | 35.0% |
| ! | GATCCAAGTTTTCTTTGTCA+GGG | + | chr5_3:52229632-52229651 | Msa0817250:intron | 35.0% |
| ! | GGAAGCAAACTTCACATTTT+GGG | - | chr5_3:52229699-52229718 | None:intergenic | 35.0% |
| ! | TGGAAGCAAACTTCACATTT+TGG | - | chr5_3:52229700-52229719 | None:intergenic | 35.0% |
| ACATGTGTCTATGCTATAAG+TGG | - | chr5_3:52230021-52230040 | None:intergenic | 35.0% | |
| ATCAAACCAGCAGCATTTAT+AGG | - | chr5_3:52230266-52230285 | None:intergenic | 35.0% | |
| !!! | AATACTTTTGGGACCAAAAG+GGG | - | chr5_3:52230304-52230323 | None:intergenic | 35.0% |
| !!! | CAATACTTTTGGGACCAAAA+GGG | - | chr5_3:52230305-52230324 | None:intergenic | 35.0% |
| !!! | ACAATACTTTTGGGACCAAA+AGG | - | chr5_3:52230306-52230325 | None:intergenic | 35.0% |
| ! | CATGAGATGGACAATACTTT+TGG | - | chr5_3:52230316-52230335 | None:intergenic | 35.0% |
| CTGTAGTTGTGAAAGATTAG+AGG | + | chr5_3:52230358-52230377 | Msa0817250:CDS | 35.0% | |
| CTATAGTATTTCGTATTCCG+AGG | - | chr5_3:52230496-52230515 | None:intergenic | 35.0% | |
| TACGAAATACTATAGACTCG+AGG | + | chr5_3:52230501-52230520 | Msa0817250:CDS | 35.0% | |
| AAATACTATAGACTCGAGGA+CGG | + | chr5_3:52230505-52230524 | Msa0817250:CDS | 35.0% | |
| !! | GAATCTGCTATAATGGATAC+TGG | + | chr5_3:52230553-52230572 | Msa0817250:CDS | 35.0% |
| TCTCTGATTGAATGGTATAG+AGG | - | chr5_3:52230589-52230608 | None:intergenic | 35.0% | |
| ! | TCTCTTTCAACAAGAAGCAT+GGG | - | chr5_3:52230652-52230671 | None:intergenic | 35.0% |
| TTCTCTTTCAACAAGAAGCA+TGG | - | chr5_3:52230653-52230672 | None:intergenic | 35.0% | |
| GCACTTAATGATGCTATTGT+TGG | + | chr5_3:52230673-52230692 | Msa0817250:CDS | 35.0% | |
| AACAAGAGGTTTATGCCTTT+CGG | + | chr5_3:52230807-52230826 | Msa0817250:CDS | 35.0% | |
| ATTCATAGAAGGCCAAGAAT+TGG | + | chr5_3:52230966-52230985 | Msa0817250:CDS | 35.0% | |
| TTCTCATGCCTATAAGTCTA+TGG | - | chr5_3:52230995-52231014 | None:intergenic | 35.0% | |
| TTGTTCTATATGGTCTACCA+AGG | + | chr5_3:52231060-52231079 | Msa0817250:CDS | 35.0% | |
| CTGCATGCCATAAAAATATC+CGG | - | chr5_3:52231229-52231248 | None:intergenic | 35.0% | |
| GAAGTTGGAATACCAACATA+AGG | - | chr5_3:52231332-52231351 | None:intergenic | 35.0% | |
| AGTCATGTATGCTTAGAAGT+TGG | - | chr5_3:52231347-52231366 | None:intergenic | 35.0% | |
| AATGATTCTTCTCCAGCTTA+TGG | + | chr5_3:52231594-52231613 | Msa0817250:CDS | 35.0% | |
| GAACACATGTTCTCTAAGTA+TGG | + | chr5_3:52231714-52231733 | Msa0817250:three_prime_UTR | 35.0% | |
| ATCAGAAGAAGGAGCCATAA+GGG | - | chr5_3:52227651-52227670 | None:intergenic | 40.0% | |
| ! | AACCCAATTGAAGGCATGTT+CGG | - | chr5_3:52228133-52228152 | None:intergenic | 40.0% |
| GTGATCACAAACCCAATTGA+AGG | - | chr5_3:52228142-52228161 | None:intergenic | 40.0% | |
| !! | GAAAATTTGGTGGTGATCAG+GGG | + | chr5_3:52228197-52228216 | Msa0817250:intron | 40.0% |
| TGAAACCAGACTTTCTCTCT+GGG | - | chr5_3:52228239-52228258 | None:intergenic | 40.0% | |
| ATGAAACCAGACTTTCTCTC+TGG | - | chr5_3:52228240-52228259 | None:intergenic | 40.0% | |
| TCATCATTATGATCCTGCAG+AGG | + | chr5_3:52228314-52228333 | Msa0817250:CDS | 40.0% | |
| TTCCATTCCCTTGACTAAGA+TGG | + | chr5_3:52228901-52228920 | Msa0817250:intron | 40.0% | |
| TTCCATCTTAGTCAAGGGAA+TGG | - | chr5_3:52228906-52228925 | None:intergenic | 40.0% | |
| TCCTCTTCCATCTTAGTCAA+GGG | - | chr5_3:52228911-52228930 | None:intergenic | 40.0% | |
| TTCCTCTTCCATCTTAGTCA+AGG | - | chr5_3:52228912-52228931 | None:intergenic | 40.0% | |
| CAGAAGGAGAAAGAGGATTT+AGG | + | chr5_3:52229047-52229066 | Msa0817250:CDS | 40.0% | |
| CTGAAGAAAGTGACATTGCA+TGG | - | chr5_3:52229073-52229092 | None:intergenic | 40.0% | |
| CATTAGCCCATCAAGGATAT+AGG | + | chr5_3:52229207-52229226 | Msa0817250:intron | 40.0% | |
| ! | TAAAATGGTGCAGGAGCATA+AGG | - | chr5_3:52229302-52229321 | None:intergenic | 40.0% |
| TCATTGGGATAAAATGGTGC+AGG | - | chr5_3:52229311-52229330 | None:intergenic | 40.0% | |
| GCATTGAACAGAAGACTATG+TGG | + | chr5_3:52229413-52229432 | Msa0817250:intron | 40.0% | |
| TTGAACAGAAGACTATGTGG+GGG | + | chr5_3:52229416-52229435 | Msa0817250:intron | 40.0% | |
| TGGAAATTGTTTAGGCTGCA+TGG | + | chr5_3:52229460-52229479 | Msa0817250:CDS | 40.0% | |
| TAATGGGAGAATGACAAGAG+TGG | - | chr5_3:52229517-52229536 | None:intergenic | 40.0% | |
| CTTCCCTGACAAAGAAAACT+TGG | - | chr5_3:52229638-52229657 | None:intergenic | 40.0% | |
| TCGGAGACTAGAATGCTAAT+TGG | - | chr5_3:52229838-52229857 | None:intergenic | 40.0% | |
| TTCTAGTCTCCGAATAAAGC+TGG | + | chr5_3:52229845-52229864 | Msa0817250:intron | 40.0% | |
| GTCAACTCCTGTCTATCAAT+TGG | + | chr5_3:52229946-52229965 | Msa0817250:intron | 40.0% | |
| TGTTAGGCCAATTGATAGAC+AGG | - | chr5_3:52229956-52229975 | None:intergenic | 40.0% | |
| GGCCTAACATCTTCACATTT+AGG | + | chr5_3:52229967-52229986 | Msa0817250:intron | 40.0% | |
| GGCCTAAATGTGAAGATGTT+AGG | - | chr5_3:52229972-52229991 | None:intergenic | 40.0% | |
| ATAGACACATGTTGCACAAG+TGG | + | chr5_3:52230029-52230048 | Msa0817250:intron | 40.0% | |
| ! | TAAGCACTTTTGAGCCTGTT+TGG | - | chr5_3:52230168-52230187 | None:intergenic | 40.0% |
| CAGATTCCTATAAATGCTGC+TGG | + | chr5_3:52230257-52230276 | Msa0817250:intron | 40.0% | |
| TTATCTTCCTCTTGAAGCCT+CGG | + | chr5_3:52230476-52230495 | Msa0817250:intron | 40.0% | |
| AATACTATAGACTCGAGGAC+GGG | + | chr5_3:52230506-52230525 | Msa0817250:CDS | 40.0% | |
| GTGCATGGAATCTGCTATAA+TGG | + | chr5_3:52230546-52230565 | Msa0817250:CDS | 40.0% | |
| !! | AACCTCTTGTTTCTGGCAAA+TGG | - | chr5_3:52230798-52230817 | None:intergenic | 40.0% |
| ! | AGGCATAAACCTCTTGTTTC+TGG | - | chr5_3:52230805-52230824 | None:intergenic | 40.0% |
| ATTGGAGGCCATAGACTTAT+AGG | + | chr5_3:52230984-52231003 | Msa0817250:CDS | 40.0% | |
| ATGGTCTACCAAGGTAACTA+TGG | + | chr5_3:52231069-52231088 | Msa0817250:intron | 40.0% | |
| AACTATGGACAGTGGAAACT+TGG | + | chr5_3:52231084-52231103 | Msa0817250:intron | 40.0% | |
| !! | CGGATATTTTTATGGCATGC+AGG | + | chr5_3:52231227-52231246 | Msa0817250:intron | 40.0% |
| GTCAGGTTCTGTCATATATG+TGG | + | chr5_3:52231433-52231452 | Msa0817250:CDS | 40.0% | |
| !! | ATGCAATGAGAGTTTGTTGC+TGG | - | chr5_3:52231477-52231496 | None:intergenic | 40.0% |
| AGCAACAAACTCTCATTGCA+TGG | + | chr5_3:52231476-52231495 | Msa0817250:CDS | 40.0% | |
| AGACTTTGCACCTTTCTTTG+AGG | - | chr5_3:52231529-52231548 | None:intergenic | 40.0% | |
| CTCGAACATATTCGTTTGAC+TGG | + | chr5_3:52231672-52231691 | Msa0817250:CDS | 40.0% | |
| TTATCCAACTTGGTCTCTTG+TGG | + | chr5_3:52231793-52231812 | Msa0817250:three_prime_UTR | 40.0% | |
| ! | GTGGATTGCTTCAAAACTCA+AGG | + | chr5_3:52231812-52231831 | Msa0817250:three_prime_UTR | 40.0% |
| AGGCTCGAACAACTTCTATA+TGG | + | chr5_3:52231842-52231861 | Msa0817250:three_prime_UTR | 40.0% | |
| AACTTCTATATGGTCCTGTG+AGG | + | chr5_3:52231852-52231871 | Msa0817250:three_prime_UTR | 40.0% | |
| GATCAGAAGAAGGAGCCATA+AGG | - | chr5_3:52227652-52227671 | None:intergenic | 45.0% | |
| ACACCGAACATGCCTTCAAT+TGG | + | chr5_3:52228127-52228146 | Msa0817250:intron | 45.0% | |
| CACCGAACATGCCTTCAATT+GGG | + | chr5_3:52228128-52228147 | Msa0817250:intron | 45.0% | |
| TTCAAAGGTGGGTCCAATAG+AGG | + | chr5_3:52228279-52228298 | Msa0817250:CDS | 45.0% | |
| CATTATGATCCTGCAGAGGA+AGG | + | chr5_3:52228318-52228337 | Msa0817250:CDS | 45.0% | |
| ACATATGTGCAACTAAGGGG+AGG | - | chr5_3:52228509-52228528 | None:intergenic | 45.0% | |
| GATTTGTAAGAGGATCACCG+TGG | - | chr5_3:52228646-52228665 | None:intergenic | 45.0% | |
| TCCCTTGACTAAGATGGAAG+AGG | + | chr5_3:52228907-52228926 | Msa0817250:intron | 45.0% | |
| TAGAGCTCAGAAGGAGAAAG+AGG | + | chr5_3:52229040-52229059 | Msa0817250:CDS | 45.0% | |
| TAGCCCATCAAGGATATAGG+TGG | + | chr5_3:52229210-52229229 | Msa0817250:intron | 45.0% | |
| AGCCCATCAAGGATATAGGT+GGG | + | chr5_3:52229211-52229230 | Msa0817250:intron | 45.0% | |
| ! | AGTATAGATGCCACCCCTTT+TGG | + | chr5_3:52230288-52230307 | Msa0817250:intron | 45.0% |
| AAGCTTGTGCTTAGAGTGCA+TGG | + | chr5_3:52230531-52230550 | Msa0817250:CDS | 45.0% | |
| CACCATTTGCCAGAAACAAG+AGG | + | chr5_3:52230793-52230812 | Msa0817250:CDS | 45.0% | |
| ! | TCACAGTTTGCTCTTCCGAA+AGG | - | chr5_3:52230825-52230844 | None:intergenic | 45.0% |
| CATAGAAGGCCAAGAATTGG+AGG | + | chr5_3:52230969-52230988 | Msa0817250:CDS | 45.0% | |
| AGTCTATGGCCTCCAATTCT+TGG | - | chr5_3:52230981-52231000 | None:intergenic | 45.0% | |
| ACCAAGGTAACTATGGACAG+TGG | + | chr5_3:52231076-52231095 | Msa0817250:intron | 45.0% | |
| TCCACTGTCCATAGTTACCT+TGG | - | chr5_3:52231080-52231099 | None:intergenic | 45.0% | |
| ATGGCATGCAGGTTACTAAC+AGG | + | chr5_3:52231238-52231257 | Msa0817250:intron | 45.0% | |
| CCATGCATGCATCAACTCAT+GGG | - | chr5_3:52231275-52231294 | None:intergenic | 45.0% | |
| ACCATGCATGCATCAACTCA+TGG | - | chr5_3:52231276-52231295 | None:intergenic | 45.0% | |
| CATGCATGGTTACGCCTTAA+AGG | + | chr5_3:52231286-52231305 | Msa0817250:CDS | 45.0% | |
| CAATCTCAGTCCTGAAGTAG+AGG | + | chr5_3:52231401-52231420 | Msa0817250:CDS | 45.0% | |
| CATATGCCTTCCTCTACTTC+AGG | - | chr5_3:52231414-52231433 | None:intergenic | 45.0% | |
| ! | AGTAGAGGAAGGCATATGTC+AGG | + | chr5_3:52231416-52231435 | Msa0817250:CDS | 45.0% |
| GCTGCTTCTTCCTCAAAGAA+AGG | + | chr5_3:52231516-52231535 | Msa0817250:CDS | 45.0% | |
| GATTCTTCTCCAGCTTATGG+TGG | + | chr5_3:52231597-52231616 | Msa0817250:CDS | 45.0% | |
| CTAAAACCACCACCATAAGC+TGG | - | chr5_3:52231609-52231628 | None:intergenic | 45.0% | |
| CAATCCACAAGAGACCAAGT+TGG | - | chr5_3:52231800-52231819 | None:intergenic | 45.0% | |
| TCAAAACTCAAGGCAGAGAG+AGG | + | chr5_3:52231822-52231841 | Msa0817250:three_prime_UTR | 45.0% | |
| TTGTACTCTGACATCCTCAC+AGG | - | chr5_3:52231869-52231888 | None:intergenic | 45.0% | |
| AGAGTGAGGGAAGAAGGAAG+AGG | - | chr5_3:52227628-52227647 | None:intergenic | 50.0% | |
| TAAGGGAGAGTGAGGGAAGA+AGG | - | chr5_3:52227634-52227653 | None:intergenic | 50.0% | |
| TCTTCCCTCACTCTCCCTTA+TGG | + | chr5_3:52227634-52227653 | Msa0817250:exon | 50.0% | |
| TCACACCCAGAGAGAAAGTC+TGG | + | chr5_3:52228231-52228250 | Msa0817250:CDS | 50.0% | |
| AAGGTGGGTCCAATAGAGGA+AGG | + | chr5_3:52228283-52228302 | Msa0817250:CDS | 50.0% | |
| ACGACCACTCCTTCCTCTAT+TGG | - | chr5_3:52228295-52228314 | None:intergenic | 50.0% | |
| TGTCGTGAACATTAGCGCAG+TGG | - | chr5_3:52228746-52228765 | None:intergenic | 50.0% | |
| TGATCGTGCTAGAGCTCAGA+AGG | + | chr5_3:52229031-52229050 | Msa0817250:CDS | 50.0% | |
| GCCCATCAAGGATATAGGTG+GGG | + | chr5_3:52229212-52229231 | Msa0817250:intron | 50.0% | |
| CCCCCACCTATATCCTTGAT+GGG | - | chr5_3:52229216-52229235 | None:intergenic | 50.0% | |
| CCCATCAAGGATATAGGTGG+GGG | + | chr5_3:52229213-52229232 | Msa0817250:CDS | 50.0% | |
| CCATCAAGGATATAGGTGGG+GGG | + | chr5_3:52229214-52229233 | Msa0817250:CDS | 50.0% | |
| CATCAAGGATATAGGTGGGG+GGG | + | chr5_3:52229215-52229234 | Msa0817250:CDS | 50.0% | |
| ! | ATGGTGCAGGAGCATAAGGA+GGG | - | chr5_3:52229298-52229317 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGAGCATAAGG+AGG | - | chr5_3:52229299-52229318 | None:intergenic | 50.0% |
| !!! | ACTTTTGGGACCAAAAGGGG+TGG | - | chr5_3:52230301-52230320 | None:intergenic | 50.0% |
| TCGTATTCCGAGGCTTCAAG+AGG | - | chr5_3:52230486-52230505 | None:intergenic | 50.0% | |
| !! | CCCATGAGTTGATGCATGCA+TGG | + | chr5_3:52231272-52231291 | Msa0817250:CDS | 50.0% |
| CTCAGTCCTGAAGTAGAGGA+AGG | + | chr5_3:52231405-52231424 | Msa0817250:CDS | 50.0% | |
| TCTTCTCCAGCTTATGGTGG+TGG | + | chr5_3:52231600-52231619 | Msa0817250:CDS | 50.0% | |
| GGAGCCATAAGGGAGAGTGA+GGG | - | chr5_3:52227641-52227660 | None:intergenic | 55.0% | |
| AGGAGCCATAAGGGAGAGTG+AGG | - | chr5_3:52227642-52227661 | None:intergenic | 55.0% | |
| GGGTCCAATAGAGGAAGGAG+TGG | + | chr5_3:52228288-52228307 | Msa0817250:CDS | 55.0% | |
| CAAGACATGCCTTCCTCTGC+AGG | - | chr5_3:52228330-52228349 | None:intergenic | 55.0% | |
| ! | CTGCAGAGGAAGGCATGTCT+TGG | + | chr5_3:52228328-52228347 | Msa0817250:CDS | 55.0% |
| ! | GCGTGCTCCATCTAGAGCTT+TGG | + | chr5_3:52228350-52228369 | Msa0817250:CDS | 55.0% |
| CCCCCCACCTATATCCTTGA+TGG | - | chr5_3:52229217-52229236 | None:intergenic | 55.0% | |
| ACTATGTGGGGGCTGCAATC+AGG | + | chr5_3:52229427-52229446 | Msa0817250:CDS | 55.0% | |
| ! | GAGTGGCATCGAAAGCAGTC+TGG | - | chr5_3:52229500-52229519 | None:intergenic | 55.0% |
| ACTACCTCGCGCTCGGTAAT+GGG | - | chr5_3:52229533-52229552 | None:intergenic | 55.0% | |
| AACTACCTCGCGCTCGGTAA+TGG | - | chr5_3:52229534-52229553 | None:intergenic | 55.0% | |
| GGATCAAACTACCTCGCGCT+CGG | - | chr5_3:52229540-52229559 | None:intergenic | 55.0% | |
| TGAGGAAGAAGCAGCAGCTG+TGG | - | chr5_3:52231511-52231530 | None:intergenic | 55.0% | |
| TTCTCCCATTACCGAGCGCG+AGG | + | chr5_3:52229526-52229545 | Msa0817250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 52227585 | 52231989 | 52227585 | ID=Msa0817250;Name=Msa0817250 |
| chr5_3 | mRNA | 52227585 | 52231989 | 52227585 | ID=Msa0817250-mRNA-1;Parent=Msa0817250;Name=Msa0817250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=68|0.90|0.83|1|0.81|0.91|12|279|491 |
| chr5_3 | exon | 52227585 | 52227704 | 52227585 | ID=Msa0817250-mRNA-1:exon:15687;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52228217 | 52228371 | 52228217 | ID=Msa0817250-mRNA-1:exon:15688;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52229029 | 52229116 | 52229029 | ID=Msa0817250-mRNA-1:exon:15689;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52229213 | 52229336 | 52229213 | ID=Msa0817250-mRNA-1:exon:15690;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52229424 | 52229547 | 52229424 | ID=Msa0817250-mRNA-1:exon:15691;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52229640 | 52229719 | 52229640 | ID=Msa0817250-mRNA-1:exon:15692;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52230295 | 52230379 | 52230295 | ID=Msa0817250-mRNA-1:exon:15693;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52230493 | 52230705 | 52230493 | ID=Msa0817250-mRNA-1:exon:15694;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52230787 | 52230849 | 52230787 | ID=Msa0817250-mRNA-1:exon:15695;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52230966 | 52231081 | 52230966 | ID=Msa0817250-mRNA-1:exon:15696;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52231249 | 52231307 | 52231249 | ID=Msa0817250-mRNA-1:exon:15697;Parent=Msa0817250-mRNA-1 |
| chr5_3 | exon | 52231394 | 52231989 | 52231394 | ID=Msa0817250-mRNA-1:exon:15698;Parent=Msa0817250-mRNA-1 |
| chr5_3 | five_prime_UTR | 52227585 | 52227652 | 52227585 | ID=Msa0817250-mRNA-1:five_prime_utr;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52227653 | 52227704 | 52227653 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52228217 | 52228371 | 52228217 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52229029 | 52229116 | 52229029 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52229213 | 52229336 | 52229213 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52229424 | 52229547 | 52229424 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52229640 | 52229719 | 52229640 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52230295 | 52230379 | 52230295 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52230493 | 52230705 | 52230493 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52230787 | 52230849 | 52230787 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52230966 | 52231081 | 52230966 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52231249 | 52231307 | 52231249 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | CDS | 52231394 | 52231710 | 52231394 | ID=Msa0817250-mRNA-1:cds;Parent=Msa0817250-mRNA-1 |
| chr5_3 | three_prime_UTR | 52231711 | 52231989 | 52231711 | ID=Msa0817250-mRNA-1:three_prime_utr;Parent=Msa0817250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
