Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737810 | RHN57038.1 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737810 | sp|Q0WSN2|DAR2_ARATH | 64.648 | 512 | 149 | 9 | 8 | 491 | 21 | 528 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737810 | A0A396HX06 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0737810 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737810 | Msa0785440 | 0.813816 | 2.113697e-51 | -8.615850e-47 |
| Msa0737810 | Msa0817250 | 0.913441 | 6.129740e-84 | -8.615850e-47 |
| Msa0737810 | Msa0817280 | 0.995603 | 6.011506e-218 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737810 | MtrunA17_Chr5g0436051 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Msa0737810 | MtrunA17_Chr3g0112601 | 70.986 | 517 | 120 | 6 | 1 | 491 | 1 | 513 | 0.0 | 739 |
| Msa0737810 | MtrunA17_Chr1g0154501 | 50.731 | 479 | 205 | 8 | 32 | 490 | 1 | 468 | 3.53e-166 | 478 |
| Msa0737810 | MtrunA17_Chr8g0373781 | 49.813 | 536 | 187 | 10 | 32 | 490 | 1 | 531 | 7.26e-165 | 476 |
| Msa0737810 | MtrunA17_Chr5g0403301 | 56.357 | 291 | 99 | 3 | 207 | 490 | 37 | 306 | 3.80e-109 | 326 |
| Msa0737810 | MtrunA17_Chr5g0403261 | 37.228 | 368 | 137 | 8 | 32 | 307 | 1 | 366 | 2.95e-74 | 238 |
| Msa0737810 | MtrunA17_Chr5g0403271 | 64.706 | 153 | 49 | 1 | 343 | 490 | 1 | 153 | 1.58e-59 | 192 |
| Msa0737810 | MtrunA17_Chr5g0403291 | 57.576 | 66 | 28 | 0 | 141 | 206 | 382 | 447 | 1.48e-20 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737810 | AT2G39830.1 | 64.648 | 512 | 149 | 9 | 8 | 491 | 21 | 528 | 0.0 | 639 |
| Msa0737810 | AT2G39830.2 | 64.272 | 515 | 149 | 10 | 8 | 491 | 21 | 531 | 0.0 | 634 |
| Msa0737810 | AT2G39830.3 | 64.244 | 509 | 147 | 9 | 8 | 491 | 21 | 519 | 0.0 | 630 |
| Msa0737810 | AT2G39830.4 | 62.175 | 423 | 132 | 8 | 8 | 406 | 21 | 439 | 5.94e-179 | 509 |
| Msa0737810 | AT4G36860.1 | 59.145 | 421 | 144 | 5 | 92 | 490 | 139 | 553 | 2.30e-168 | 486 |
| Msa0737810 | AT4G36860.3 | 59.145 | 421 | 144 | 5 | 92 | 490 | 163 | 577 | 2.79e-168 | 487 |
| Msa0737810 | AT1G19270.1 | 46.154 | 533 | 213 | 7 | 32 | 491 | 1 | 532 | 1.00e-160 | 466 |
| Msa0737810 | AT1G19270.2 | 46.154 | 533 | 213 | 7 | 32 | 491 | 1 | 532 | 1.00e-160 | 466 |
| Msa0737810 | AT4G36860.2 | 58.075 | 322 | 109 | 4 | 92 | 393 | 139 | 454 | 6.40e-127 | 377 |
| Msa0737810 | AT5G66610.3 | 50.847 | 354 | 161 | 5 | 142 | 484 | 73 | 424 | 4.82e-115 | 346 |
| Msa0737810 | AT5G66620.1 | 49.722 | 360 | 159 | 5 | 142 | 483 | 285 | 640 | 8.95e-115 | 352 |
| Msa0737810 | AT5G66620.3 | 42.418 | 455 | 231 | 7 | 56 | 483 | 181 | 631 | 2.26e-114 | 351 |
| Msa0737810 | AT5G66620.4 | 42.418 | 455 | 231 | 7 | 56 | 483 | 181 | 631 | 2.26e-114 | 351 |
| Msa0737810 | AT5G66610.1 | 50.847 | 354 | 161 | 5 | 142 | 484 | 200 | 551 | 4.05e-114 | 348 |
| Msa0737810 | AT5G66610.2 | 47.244 | 381 | 161 | 6 | 142 | 484 | 200 | 578 | 2.37e-108 | 334 |
| Msa0737810 | AT5G66630.1 | 46.667 | 360 | 167 | 7 | 142 | 483 | 346 | 698 | 1.88e-102 | 322 |
| Msa0737810 | AT5G66640.1 | 45.869 | 351 | 160 | 6 | 161 | 483 | 90 | 438 | 7.75e-94 | 292 |
| Msa0737810 | AT5G66640.7 | 45.869 | 351 | 160 | 6 | 161 | 483 | 90 | 438 | 7.75e-94 | 292 |
| Msa0737810 | AT5G17890.1 | 47.527 | 364 | 166 | 7 | 143 | 483 | 1240 | 1601 | 2.24e-93 | 310 |
| Msa0737810 | AT5G66640.4 | 45.869 | 351 | 160 | 6 | 161 | 483 | 121 | 469 | 3.35e-93 | 291 |
| Msa0737810 | AT5G66640.5 | 45.869 | 351 | 160 | 6 | 161 | 483 | 122 | 470 | 3.56e-93 | 291 |
| Msa0737810 | AT5G66640.3 | 46.769 | 325 | 145 | 5 | 187 | 483 | 7 | 331 | 5.33e-90 | 278 |
| Msa0737810 | AT5G66640.2 | 41.595 | 351 | 171 | 8 | 161 | 483 | 121 | 465 | 9.62e-77 | 249 |
| Msa0737810 | AT5G66640.6 | 41.311 | 351 | 172 | 7 | 161 | 483 | 122 | 466 | 9.67e-77 | 249 |
| Msa0737810 | AT5G66620.2 | 45.291 | 223 | 107 | 4 | 142 | 353 | 276 | 494 | 1.71e-62 | 212 |
Find 127 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGCAAACTTCACATTT+TGG | 0.182828 | 5_1:+55286660 | None:intergenic |
| AGGCATAAACCTCTTGTTTC+TGG | 0.186251 | 5_1:+55285552 | None:intergenic |
| AATATGTGTATATACCTTTA+AGG | 0.205624 | 5_1:+55285053 | None:intergenic |
| GTCTCATGTTGAAAACAAAT+TGG | 0.214527 | 5_1:-55284807 | Msa0737810:CDS |
| TTAAAACAAGATTTGTGATA+TGG | 0.216060 | 5_1:+55286696 | None:intergenic |
| TCTTCCCTCACTCTCCCTTA+TGG | 0.245389 | 5_1:-55288722 | Msa0737810:exon |
| CTGTATTCATTGGGATAAAA+TGG | 0.256062 | 5_1:+55287043 | None:intergenic |
| AATGAAGCTGTTAATAAATA+TGG | 0.258522 | 5_1:-55284716 | Msa0737810:CDS |
| ACAGCAATTCTTGTTCTATA+TGG | 0.261118 | 5_1:-55285304 | Msa0737810:CDS |
| CATGAGATGGACAATACTTT+TGG | 0.265205 | 5_1:+55286041 | None:intergenic |
| CATGCATGGTTACGCCTTAA+AGG | 0.286050 | 5_1:-55285067 | Msa0737810:intron |
| AGTATAGATGCCACCCCTTT+TGG | 0.293022 | 5_1:-55286066 | Msa0737810:intron |
| GGAGAAAATGATGAAGATTA+TGG | 0.298017 | 5_1:-55287121 | Msa0737810:CDS |
| AATGATTCTTCTCCAGCTTA+TGG | 0.306927 | 5_1:-55284758 | Msa0737810:CDS |
| CTTTCTCATCCATGTATATA+TGG | 0.313577 | 5_1:-55288673 | Msa0737810:intron |
| ATTGGAGGCCATAGACTTAT+AGG | 0.316467 | 5_1:-55285370 | Msa0737810:CDS |
| GAACACATGTTCTCTAAGTA+TGG | 0.327365 | 5_1:-55284638 | Msa0737810:three_prime_UTR |
| AAGATTTCACCTGTATTCAT+TGG | 0.335163 | 5_1:+55287033 | None:intergenic |
| AACTACCTCGCGCTCGGTAA+TGG | 0.338884 | 5_1:+55286826 | None:intergenic |
| GAAAGTCTGGTTTCATGAAA+TGG | 0.348540 | 5_1:-55288112 | Msa0737810:CDS |
| AACAAGAGGTTTATGCCTTT+CGG | 0.351720 | 5_1:-55285547 | Msa0737810:CDS |
| ACGACCACTCCTTCCTCTAT+TGG | 0.353168 | 5_1:+55288064 | None:intergenic |
| GTGCATGGAATCTGCTATAA+TGG | 0.356084 | 5_1:-55285808 | Msa0737810:CDS |
| ACTACCTCGCGCTCGGTAAT+GGG | 0.362527 | 5_1:+55286827 | None:intergenic |
| ATAATCTATGGAAATTGTTT+AGG | 0.366827 | 5_1:-55286905 | Msa0737810:CDS |
| AGTCTATGGCCTCCAATTCT+TGG | 0.369796 | 5_1:+55285376 | None:intergenic |
| CAGAAGGAGAAAGAGGATTT+AGG | 0.374040 | 5_1:-55287310 | Msa0737810:CDS |
| GCACTTAATGATGCTATTGT+TGG | 0.375277 | 5_1:-55285681 | Msa0737810:CDS |
| ATGAAACCAGACTTTCTCTC+TGG | 0.376624 | 5_1:+55288119 | None:intergenic |
| TTCTCATGCCTATAAGTCTA+TGG | 0.380772 | 5_1:+55285362 | None:intergenic |
| AACCTCTTGTTTCTGGCAAA+TGG | 0.381781 | 5_1:+55285559 | None:intergenic |
| AATAATAAGCTAAATACATT+AGG | 0.385158 | 5_1:+55284428 | None:intergenic |
| CATTAGCCCATCAAGGATAT+AGG | 0.386946 | 5_1:-55287150 | Msa0737810:intron |
| ATTGTTCTACAAGTGACTAT+TGG | 0.392656 | 5_1:-55284588 | Msa0737810:three_prime_UTR |
| ATGGCATGCAGGTTACTAAC+AGG | 0.396063 | 5_1:-55285115 | Msa0737810:intron |
| CTCGAACATATTCGTTTGAC+TGG | 0.400738 | 5_1:-55284680 | Msa0737810:CDS |
| CATAATAATCTCTGATTGAA+TGG | 0.404836 | 5_1:+55285760 | None:intergenic |
| CTGTAGTTGTGAAAGATTAG+AGG | 0.408619 | 5_1:-55285996 | Msa0737810:intron |
| TGCAATCAGGAGATAATCTA+TGG | 0.410658 | 5_1:-55286917 | Msa0737810:CDS |
| AGGCTCGAACAACTTCTATA+TGG | 0.413581 | 5_1:-55284510 | Msa0737810:three_prime_UTR |
| TGTTGTTTCAGATTCATAGA+AGG | 0.415721 | 5_1:-55285399 | Msa0737810:intron |
| TTGTTTACCAAAGCTCTAGA+TGG | 0.420805 | 5_1:+55287999 | None:intergenic |
| GAATCTGCTATAATGGATAC+TGG | 0.421279 | 5_1:-55285801 | Msa0737810:CDS |
| ATTCATAGAAGGCCAAGAAT+TGG | 0.426756 | 5_1:-55285388 | Msa0737810:CDS |
| AGATTTCACCTGTATTCATT+GGG | 0.428419 | 5_1:+55287034 | None:intergenic |
| TTATCCAACTTGGTCTCTTG+TGG | 0.433491 | 5_1:-55284559 | Msa0737810:three_prime_UTR |
| CATATGCCTTCCTCTACTTC+AGG | 0.435073 | 5_1:+55284941 | None:intergenic |
| TTCAAAGGTGGGTCCAATAG+AGG | 0.438064 | 5_1:-55288077 | Msa0737810:CDS |
| ATCAGAAGAAGGAGCCATAA+GGG | 0.441052 | 5_1:+55288708 | None:intergenic |
| TCAATCAGAGATTATTATGA+AGG | 0.445893 | 5_1:-55285756 | Msa0737810:CDS |
| CAAGACATGCCTTCCTCTGC+AGG | 0.450171 | 5_1:+55288029 | None:intergenic |
| TCTTCTCCAGCTTATGGTGG+TGG | 0.452845 | 5_1:-55284752 | Msa0737810:CDS |
| TCTCATGTTGAAAACAAATT+GGG | 0.452858 | 5_1:-55284806 | Msa0737810:CDS |
| GCGTGCTCCATCTAGAGCTT+TGG | 0.454192 | 5_1:-55288006 | Msa0737810:intron |
| TAAAATGGTGCAGGAGCATA+AGG | 0.458370 | 5_1:+55287058 | None:intergenic |
| TCACACCCAGAGAGAAAGTC+TGG | 0.460029 | 5_1:-55288125 | Msa0737810:CDS |
| TAAGGGAGAGTGAGGGAAGA+AGG | 0.460899 | 5_1:+55288725 | None:intergenic |
| AGACTTTGCACCTTTCTTTG+AGG | 0.470152 | 5_1:+55284826 | None:intergenic |
| GAGTGGCATCGAAAGCAGTC+TGG | 0.476246 | 5_1:+55286860 | None:intergenic |
| ATGCAATGAGAGTTTGTTGC+TGG | 0.480588 | 5_1:+55284878 | None:intergenic |
| TGGAAATTGTTTAGGCTGCA+TGG | 0.497463 | 5_1:-55286897 | Msa0737810:CDS |
| GATCAGAAGAAGGAGCCATA+AGG | 0.497642 | 5_1:+55288707 | None:intergenic |
| GAAGATATGAAGAGACCAAA+TGG | 0.499622 | 5_1:-55287262 | Msa0737810:intron |
| TTCTCTTTCAACAAGAAGCA+TGG | 0.501914 | 5_1:+55285704 | None:intergenic |
| CTAAAACCACCACCATAAGC+TGG | 0.509878 | 5_1:+55284746 | None:intergenic |
| CTGCAGAGGAAGGCATGTCT+TGG | 0.516391 | 5_1:-55288028 | Msa0737810:CDS |
| TAGAGCTCAGAAGGAGAAAG+AGG | 0.516816 | 5_1:-55287317 | Msa0737810:CDS |
| ACCATGCATGCATCAACTCA+TGG | 0.520688 | 5_1:+55285080 | None:intergenic |
| TGATCGTGCTAGAGCTCAGA+AGG | 0.527771 | 5_1:-55287326 | Msa0737810:CDS |
| TTATTTGCATTAGCCCATCA+AGG | 0.527904 | 5_1:-55287157 | Msa0737810:intron |
| TCTCTGATTGAATGGTATAG+AGG | 0.533543 | 5_1:+55285768 | None:intergenic |
| AGGAGCCATAAGGGAGAGTG+AGG | 0.534142 | 5_1:+55288717 | None:intergenic |
| GTGGATTGCTTCAAAACTCA+AGG | 0.534190 | 5_1:-55284540 | Msa0737810:three_prime_UTR |
| GGATCAAACTACCTCGCGCT+CGG | 0.536169 | 5_1:+55286820 | None:intergenic |
| GCTGCTTCTTCCTCAAAGAA+AGG | 0.536522 | 5_1:-55284836 | Msa0737810:CDS |
| AGAGTGAGGGAAGAAGGAAG+AGG | 0.536709 | 5_1:+55288731 | None:intergenic |
| CATAGAAGGCCAAGAATTGG+AGG | 0.541624 | 5_1:-55285385 | Msa0737810:CDS |
| GTCAGGTTCTGTCATATATG+TGG | 0.544593 | 5_1:-55284919 | Msa0737810:CDS |
| TCTCTTTCAACAAGAAGCAT+GGG | 0.545613 | 5_1:+55285705 | None:intergenic |
| AAGCTTGTGCTTAGAGTGCA+TGG | 0.547235 | 5_1:-55285823 | Msa0737810:CDS |
| CCCATCAAGGATATAGGTGG+GGG | 0.548766 | 5_1:-55287144 | Msa0737810:CDS |
| CACCATTTGCCAGAAACAAG+AGG | 0.548780 | 5_1:-55285561 | Msa0737810:CDS |
| TCATTGGGATAAAATGGTGC+AGG | 0.553987 | 5_1:+55287049 | None:intergenic |
| TGAAACCAGACTTTCTCTCT+GGG | 0.553994 | 5_1:+55288120 | None:intergenic |
| CATTATGATCCTGCAGAGGA+AGG | 0.555932 | 5_1:-55288038 | Msa0737810:CDS |
| AACATGTGTTCTTATTACAC+AGG | 0.561919 | 5_1:+55284650 | None:intergenic |
| GATTCTTCTCCAGCTTATGG+TGG | 0.562395 | 5_1:-55284755 | Msa0737810:CDS |
| AGTAGAGGAAGGCATATGTC+AGG | 0.562990 | 5_1:-55284936 | Msa0737810:CDS |
| CTATAGTATTTCGTATTCCG+AGG | 0.568127 | 5_1:+55285861 | None:intergenic |
| CCATGCATGCATCAACTCAT+GGG | 0.575521 | 5_1:+55285081 | None:intergenic |
| AGCCCATCAAGGATATAGGT+GGG | 0.576893 | 5_1:-55287146 | Msa0737810:CDS |
| CCCATGAGTTGATGCATGCA+TGG | 0.580940 | 5_1:-55285081 | Msa0737810:CDS |
| AGCAACAAACTCTCATTGCA+TGG | 0.581985 | 5_1:-55284876 | Msa0737810:CDS |
| TCACAGTTTGCTCTTCCGAA+AGG | 0.583186 | 5_1:+55285532 | None:intergenic |
| CTGAAGAAAGTGACATTGCA+TGG | 0.583861 | 5_1:+55287287 | None:intergenic |
| AAATGATGAAGATTATGGAA+AGG | 0.584158 | 5_1:-55287116 | Msa0737810:CDS |
| GTATTGTCATATTCATGAGA+TGG | 0.585321 | 5_1:+55286028 | None:intergenic |
| GCCCATCAAGGATATAGGTG+GGG | 0.591148 | 5_1:-55287145 | Msa0737810:CDS |
| CAATCTCAGTCCTGAAGTAG+AGG | 0.592599 | 5_1:-55284951 | Msa0737810:CDS |
| TGAGGAAGAAGCAGCAGCTG+TGG | 0.594186 | 5_1:+55284844 | None:intergenic |
| TAGCCCATCAAGGATATAGG+TGG | 0.597899 | 5_1:-55287147 | Msa0737810:CDS |
| TGATTGATATGATCAGAAGA+AGG | 0.604305 | 5_1:+55288697 | None:intergenic |
| CATCAAGGATATAGGTGGGG+GGG | 0.609524 | 5_1:-55287142 | Msa0737810:CDS |
| CATTGAACAGAAGACTATGT+GGG | 0.609543 | 5_1:-55286943 | Msa0737810:intron |
| TCAAAACTCAAGGCAGAGAG+AGG | 0.611009 | 5_1:-55284530 | Msa0737810:three_prime_UTR |
| AATACTATAGACTCGAGGAC+GGG | 0.611229 | 5_1:-55285848 | Msa0737810:CDS |
| CTCAGTCCTGAAGTAGAGGA+AGG | 0.619865 | 5_1:-55284947 | Msa0737810:CDS |
| TTGTACTCTGACATCCTCAC+AGG | 0.622459 | 5_1:+55284486 | None:intergenic |
| CAATCCACAAGAGACCAAGT+TGG | 0.625624 | 5_1:+55284555 | None:intergenic |
| AATGGTGCAGGAGCATAAGG+AGG | 0.625823 | 5_1:+55287061 | None:intergenic |
| AGTAAAGTACCATATATACA+TGG | 0.626223 | 5_1:+55288664 | None:intergenic |
| TTCTCCCATTACCGAGCGCG+AGG | 0.628667 | 5_1:-55286831 | Msa0737810:intron |
| AAGGTGGGTCCAATAGAGGA+AGG | 0.645391 | 5_1:-55288073 | Msa0737810:CDS |
| GGAGCCATAAGGGAGAGTGA+GGG | 0.648423 | 5_1:+55288718 | None:intergenic |
| ATTGAACAGAAGACTATGTG+GGG | 0.648467 | 5_1:-55286942 | Msa0737810:intron |
| AAATACTATAGACTCGAGGA+CGG | 0.654015 | 5_1:-55285849 | Msa0737810:CDS |
| GCATTGAACAGAAGACTATG+TGG | 0.658253 | 5_1:-55286944 | Msa0737810:intron |
| TTGTTCTATATGGTCTACCA+AGG | 0.659611 | 5_1:-55285294 | Msa0737810:intron |
| AACTTCTATATGGTCCTGTG+AGG | 0.664585 | 5_1:-55284500 | Msa0737810:three_prime_UTR |
| ACATGTGTTCTTATTACACA+GGG | 0.664721 | 5_1:+55284651 | None:intergenic |
| GGGTCCAATAGAGGAAGGAG+TGG | 0.672837 | 5_1:-55288068 | Msa0737810:CDS |
| ATGGTGCAGGAGCATAAGGA+GGG | 0.678829 | 5_1:+55287062 | None:intergenic |
| CCATCAAGGATATAGGTGGG+GGG | 0.680331 | 5_1:-55287143 | Msa0737810:CDS |
| TAATGGGAGAATGACAAGAG+TGG | 0.685159 | 5_1:+55286843 | None:intergenic |
| TACGAAATACTATAGACTCG+AGG | 0.695310 | 5_1:-55285853 | Msa0737810:CDS |
| TCATCATTATGATCCTGCAG+AGG | 0.695986 | 5_1:-55288042 | Msa0737810:CDS |
| TTGAACAGAAGACTATGTGG+GGG | 0.724066 | 5_1:-55286941 | Msa0737810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATAATTGAATATAATA+TGG | + | chr5_1:55285736-55285755 | None:intergenic | 10.0% |
| !!! | TTTTGTAATTTTTCTTAAGT+GGG | + | chr5_1:55284625-55284644 | None:intergenic | 15.0% |
| !!! | TTTTTGTAATTTTTCTTAAG+TGG | + | chr5_1:55284626-55284645 | None:intergenic | 15.0% |
| !!! | TTTCATTTGATTTCATTAAA+AGG | - | chr5_1:55284686-55284705 | Msa0737810:CDS | 15.0% |
| !!! | TTCATTTGATTTCATTAAAA+GGG | - | chr5_1:55284687-55284706 | Msa0737810:CDS | 15.0% |
| !!! | ATACTTTTTTGACTTATTTT+TGG | - | chr5_1:55285593-55285612 | Msa0737810:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGACTCA+AGG | - | chr5_1:55285769-55285788 | Msa0737810:CDS | 15.0% |
| !!! | ATTTTGCTATCATTTATAAT+TGG | - | chr5_1:55286174-55286193 | Msa0737810:intron | 15.0% |
| !! | TATAGATTAAAGTTATTCAT+TGG | + | chr5_1:55287239-55287258 | None:intergenic | 15.0% |
| !!! | TAAAATTGAAATGTTTTTAC+CGG | - | chr5_1:55288010-55288029 | Msa0737810:CDS | 15.0% |
| !! | AATAATAAGCTAAATACATT+AGG | + | chr5_1:55288731-55288750 | None:intergenic | 15.0% |
| !! | AGTTCAAATAATAGTTTCAT+GGG | + | chr5_1:55284659-55284678 | None:intergenic | 20.0% |
| !! | AAGTTCAAATAATAGTTTCA+TGG | + | chr5_1:55284660-55284679 | None:intergenic | 20.0% |
| !!! | TTTTCATATGAATCCAAAAA+AGG | - | chr5_1:55284756-55284775 | Msa0737810:CDS | 20.0% |
| !! | CTTATTGAATCATGAAAATT+TGG | - | chr5_1:55284984-55285003 | Msa0737810:intron | 20.0% |
| !! | GTATTATTTGGACTAATAAT+TGG | - | chr5_1:55285661-55285680 | Msa0737810:intron | 20.0% |
| !! | ACAATACTATTGATGTAATT+AGG | - | chr5_1:55285806-55285825 | Msa0737810:CDS | 20.0% |
| !! | ATAATCTATGGAAATTGTTT+AGG | - | chr5_1:55286251-55286270 | Msa0737810:intron | 20.0% |
| !! | TTAAAACAAGATTTGTGATA+TGG | + | chr5_1:55286463-55286482 | None:intergenic | 20.0% |
| !! | AATTATGAAACAATTTAGAG+TGG | + | chr5_1:55287200-55287219 | None:intergenic | 20.0% |
| !! | AACAATATAGAGTAATTAAG+AGG | + | chr5_1:55287561-55287580 | None:intergenic | 20.0% |
| !!! | TGATCTACAATTTTTTCATA+AGG | + | chr5_1:55287934-55287953 | None:intergenic | 20.0% |
| !!! | TAAATTGATGATTCACTAAA+TGG | + | chr5_1:55287966-55287985 | None:intergenic | 20.0% |
| !! | AATATGTGTATATACCTTTA+AGG | + | chr5_1:55288106-55288125 | None:intergenic | 20.0% |
| !! | AATGAAGCTGTTAATAAATA+TGG | - | chr5_1:55288440-55288459 | Msa0737810:intron | 20.0% |
| !! | AGTAAAGTACCATATATACA+TGG | + | chr5_1:55284495-55284514 | None:intergenic | 25.0% |
| ! | TTTGAATATCAAAGTGCATA+AGG | + | chr5_1:55284573-55284592 | None:intergenic | 25.0% |
| ! | TTGGAGTAAAATTGTGTAAA+GGG | + | chr5_1:55284602-55284621 | None:intergenic | 25.0% |
| ! | ATGAATGTAATAACATGTGT+CGG | - | chr5_1:55284888-55284907 | Msa0737810:CDS | 25.0% |
| ! | ATTGAATCATGAAAATTTGG+TGG | - | chr5_1:55284987-55285006 | Msa0737810:intron | 25.0% |
| ! | TGAAGAAAAATGAAATTGAG+TGG | + | chr5_1:55285185-55285204 | None:intergenic | 25.0% |
| !!! | TGATTCTTGTTTGTTATGAA+TGG | - | chr5_1:55285221-55285240 | Msa0737810:intron | 25.0% |
| !!! | TGTGTGATTTTTTAGAAACA+TGG | - | chr5_1:55285356-55285375 | Msa0737810:CDS | 25.0% |
| ! | CTTATTATGTACTAAATCCA+CGG | - | chr5_1:55285426-55285445 | Msa0737810:intron | 25.0% |
| !! | ATTATTTGGTGATTTGTAAG+AGG | + | chr5_1:55285456-55285475 | None:intergenic | 25.0% |
| ! | GCGTTAACATAGTAATTATT+TGG | + | chr5_1:55285470-55285489 | None:intergenic | 25.0% |
| !!! | AGTATACTTTCTAAAGTTTG+AGG | + | chr5_1:55285578-55285597 | None:intergenic | 25.0% |
| ! | AAGTGAGACTTAGTATTATT+TGG | - | chr5_1:55285649-55285668 | Msa0737810:intron | 25.0% |
| ! | AAAATTAAGTACCAACCATT+TGG | + | chr5_1:55285912-55285931 | None:intergenic | 25.0% |
| ! | AAATGATGAAGATTATGGAA+AGG | - | chr5_1:55286040-55286059 | Msa0737810:CDS | 25.0% |
| ! | CAACAAACAAAAAAATAGTC+AGG | + | chr5_1:55286412-55286431 | None:intergenic | 25.0% |
| ! | CTAATGTCATAGTTCTTATA+AGG | + | chr5_1:55286599-55286618 | None:intergenic | 25.0% |
| ! | GAAGTAAATTATCAATGAGA+GGG | + | chr5_1:55286699-55286718 | None:intergenic | 25.0% |
| ! | TGAAGTAAATTATCAATGAG+AGG | + | chr5_1:55286700-55286719 | None:intergenic | 25.0% |
| !!! | AAGTTATTCATTGGTTGTTT+TGG | + | chr5_1:55287230-55287249 | None:intergenic | 25.0% |
| ! | CATAATAATCTCTGATTGAA+TGG | + | chr5_1:55287399-55287418 | None:intergenic | 25.0% |
| ! | TCAATCAGAGATTATTATGA+AGG | - | chr5_1:55287400-55287419 | Msa0737810:intron | 25.0% |
| ! | TGTGTTAAAATATCATACAC+TGG | + | chr5_1:55287650-55287669 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTGATTAGAATG+TGG | - | chr5_1:55287678-55287697 | Msa0737810:intron | 25.0% |
| !!! | CATTTTCTTATTAGCTTTTG+AGG | + | chr5_1:55287825-55287844 | None:intergenic | 25.0% |
| ! | TTTCATAAGGTAATTTCTGA+GGG | + | chr5_1:55287921-55287940 | None:intergenic | 25.0% |
| !! | TTTTCATAAGGTAATTTCTG+AGG | + | chr5_1:55287922-55287941 | None:intergenic | 25.0% |
| !!! | GTTTTTACCGGATATTTTTA+TGG | - | chr5_1:55288022-55288041 | Msa0737810:CDS | 25.0% |
| !! | CATATTTTTCATCCTTATGT+TGG | - | chr5_1:55288120-55288139 | Msa0737810:CDS | 25.0% |
| ! | TTGTTCATCTTGAAATATGT+AGG | - | chr5_1:55288176-55288195 | Msa0737810:intron | 25.0% |
| ! | TCTCATGTTGAAAACAAATT+GGG | - | chr5_1:55288350-55288369 | Msa0737810:intron | 25.0% |
| TGATTGATATGATCAGAAGA+AGG | + | chr5_1:55284462-55284481 | None:intergenic | 30.0% | |
| CTTTCTCATCCATGTATATA+TGG | - | chr5_1:55284483-55284502 | Msa0737810:three_prime_UTR | 30.0% | |
| AGAAAAAGAGAAAAGAGAGA+AGG | + | chr5_1:55284520-55284539 | None:intergenic | 30.0% | |
| GTTGGAGTAAAATTGTGTAA+AGG | + | chr5_1:55284603-55284622 | None:intergenic | 30.0% | |
| ! | GTAATTTTTCTTAAGTGGGT+TGG | + | chr5_1:55284621-55284640 | None:intergenic | 30.0% |
| !!! | CTAGACAATCATACCTTTTT+TGG | + | chr5_1:55284772-55284791 | None:intergenic | 30.0% |
| TTTGATGTTTGTGTTTGTGA+CGG | + | chr5_1:55284817-55284836 | None:intergenic | 30.0% | |
| ACAAACACAAACATCAAACA+TGG | - | chr5_1:55284819-55284838 | Msa0737810:CDS | 30.0% | |
| ! | TTAGTAAGCTTTTCAAAGGT+GGG | - | chr5_1:55285068-55285087 | Msa0737810:CDS | 30.0% |
| !! | TTCTTGTTTGTTATGAATGG+AGG | - | chr5_1:55285224-55285243 | Msa0737810:intron | 30.0% |
| TGTTGGAACTTATTGAATGT+TGG | + | chr5_1:55285334-55285353 | None:intergenic | 30.0% | |
| CTAAAAAATCACACACATGT+TGG | + | chr5_1:55285351-55285370 | None:intergenic | 30.0% | |
| !!! | GTGATTTTTTAGAAACATGG+TGG | - | chr5_1:55285359-55285378 | Msa0737810:CDS | 30.0% |
| TTCATCTTGATGAGATCAAT+AGG | + | chr5_1:55285631-55285650 | None:intergenic | 30.0% | |
| GGAGAAAATGATGAAGATTA+TGG | - | chr5_1:55286035-55286054 | Msa0737810:CDS | 30.0% | |
| CTGTATTCATTGGGATAAAA+TGG | + | chr5_1:55286116-55286135 | None:intergenic | 30.0% | |
| ! | CATTTTATCCCAATGAATAC+AGG | - | chr5_1:55286114-55286133 | Msa0737810:intron | 30.0% |
| AGATTTCACCTGTATTCATT+GGG | + | chr5_1:55286125-55286144 | None:intergenic | 30.0% | |
| AAGATTTCACCTGTATTCAT+TGG | + | chr5_1:55286126-55286145 | None:intergenic | 30.0% | |
| GATCTCAAAATCTCATAAAG+AGG | + | chr5_1:55286360-55286379 | None:intergenic | 30.0% | |
| GGAAGATTAATCTTACAAAC+TGG | + | chr5_1:55286519-55286538 | None:intergenic | 30.0% | |
| AGAATAACTTGAGTAAGCAA+AGG | + | chr5_1:55286540-55286559 | None:intergenic | 30.0% | |
| !! | TTCAAAAGTCCAGCTTTATT+CGG | + | chr5_1:55286656-55286675 | None:intergenic | 30.0% |
| AATTATCAATGAGAGGGAAA+TGG | + | chr5_1:55286693-55286712 | None:intergenic | 30.0% | |
| !!! | TAAGTTGTTTTTCGCAAACA+GGG | + | chr5_1:55286792-55286811 | None:intergenic | 30.0% |
| !!! | TTAAGTTGTTTTTCGCAAAC+AGG | + | chr5_1:55286793-55286812 | None:intergenic | 30.0% |
| TTGTATAAACTCTACCAAAC+AGG | - | chr5_1:55286953-55286972 | Msa0737810:intron | 30.0% | |
| TCAAAAAAGCTAGTCAAAAC+AGG | - | chr5_1:55287001-55287020 | Msa0737810:intron | 30.0% | |
| ! | ATGAGATGGACAATACTTTT+GGG | + | chr5_1:55287117-55287136 | None:intergenic | 30.0% |
| GTATTGTCATATTCATGAGA+TGG | + | chr5_1:55287131-55287150 | None:intergenic | 30.0% | |
| !! | TACTCTATATTGTTTCTGTC+AGG | - | chr5_1:55287567-55287586 | Msa0737810:intron | 30.0% |
| !! | ACTCTATATTGTTTCTGTCA+GGG | - | chr5_1:55287568-55287587 | Msa0737810:intron | 30.0% |
| !! | TGTTGTTTCAGATTCATAGA+AGG | - | chr5_1:55287757-55287776 | Msa0737810:intron | 30.0% |
| ACAGCAATTCTTGTTCTATA+TGG | - | chr5_1:55287852-55287871 | Msa0737810:intron | 30.0% | |
| TTCATAAGGTAATTTCTGAG+GGG | + | chr5_1:55287920-55287939 | None:intergenic | 30.0% | |
| TTTAGTGCTTGAAATAGAAC+AGG | - | chr5_1:55287982-55288001 | Msa0737810:intron | 30.0% | |
| GTCTCATGTTGAAAACAAAT+TGG | - | chr5_1:55288349-55288368 | Msa0737810:intron | 30.0% | |
| ACATGTGTTCTTATTACACA+GGG | + | chr5_1:55288508-55288527 | None:intergenic | 30.0% | |
| AACATGTGTTCTTATTACAC+AGG | + | chr5_1:55288509-55288528 | None:intergenic | 30.0% | |
| ATTGTTCTACAAGTGACTAT+TGG | - | chr5_1:55288568-55288587 | Msa0737810:intron | 30.0% | |
| !!! | TTGGTCTTTTTTATCCAACT+TGG | - | chr5_1:55288587-55288606 | Msa0737810:intron | 30.0% |
| GGTGTTTCATGTAAGTAACA+TGG | + | chr5_1:55284796-55284815 | None:intergenic | 35.0% | |
| GTTTGTGATCACTATTCAAG+AGG | - | chr5_1:55284950-55284969 | Msa0737810:CDS | 35.0% | |
| !! | ATGAAAATTTGGTGGTGATC+AGG | - | chr5_1:55284995-55285014 | Msa0737810:intron | 35.0% |
| !! | TGAAAATTTGGTGGTGATCA+GGG | - | chr5_1:55284996-55285015 | Msa0737810:intron | 35.0% |
| ! | GAAAGTCTGGTTTCATGAAA+TGG | - | chr5_1:55285044-55285063 | Msa0737810:intron | 35.0% |
| ! | TGGCTTAGTAAGCTTTTCAA+AGG | - | chr5_1:55285064-55285083 | Msa0737810:intron | 35.0% |
| ! | CTTAGTAAGCTTTTCAAAGG+TGG | - | chr5_1:55285067-55285086 | Msa0737810:intron | 35.0% |
| !! | TTGTTTACCAAAGCTCTAGA+TGG | + | chr5_1:55285160-55285179 | None:intergenic | 35.0% |
| GAAACATATGTGCAACTAAG+GGG | + | chr5_1:55285312-55285331 | None:intergenic | 35.0% | |
| GGAAACATATGTGCAACTAA+GGG | + | chr5_1:55285313-55285332 | None:intergenic | 35.0% | |
| TGGAAACATATGTGCAACTA+AGG | + | chr5_1:55285314-55285333 | None:intergenic | 35.0% | |
| TATGTTAACGCATTCTCTAG+TGG | - | chr5_1:55285479-55285498 | Msa0737810:intron | 35.0% | |
| GAAGATATGAAGAGACCAAA+TGG | - | chr5_1:55285894-55285913 | Msa0737810:intron | 35.0% | |
| ATATGAAGAGACCAAATGGT+TGG | - | chr5_1:55285898-55285917 | Msa0737810:intron | 35.0% | |
| !!! | AAAAGTGCTTTTTGCTCACT+TGG | - | chr5_1:55285937-55285956 | Msa0737810:intron | 35.0% |
| TTATTTGCATTAGCCCATCA+AGG | - | chr5_1:55285999-55286018 | Msa0737810:CDS | 35.0% | |
| !! | TAATTGGTAATGTGTGTGTG+TGG | - | chr5_1:55286190-55286209 | Msa0737810:intron | 35.0% |
| CATTGAACAGAAGACTATGT+GGG | - | chr5_1:55286213-55286232 | Msa0737810:intron | 35.0% | |
| ATTGAACAGAAGACTATGTG+GGG | - | chr5_1:55286214-55286233 | Msa0737810:intron | 35.0% | |
| TGCAATCAGGAGATAATCTA+TGG | - | chr5_1:55286239-55286258 | Msa0737810:intron | 35.0% | |
| ! | TGATCCAAGTTTTCTTTGTC+AGG | - | chr5_1:55286430-55286449 | Msa0737810:intron | 35.0% |
| ! | GATCCAAGTTTTCTTTGTCA+GGG | - | chr5_1:55286431-55286450 | Msa0737810:intron | 35.0% |
| ! | GGAAGCAAACTTCACATTTT+GGG | + | chr5_1:55286498-55286517 | None:intergenic | 35.0% |
| ! | TGGAAGCAAACTTCACATTT+TGG | + | chr5_1:55286499-55286518 | None:intergenic | 35.0% |
| ACATGTGTCTATGCTATAAG+TGG | + | chr5_1:55286820-55286839 | None:intergenic | 35.0% | |
| ATCAAACCAGCAGCATTTAT+AGG | + | chr5_1:55287068-55287087 | None:intergenic | 35.0% | |
| !!! | AATACTTTTGGGACCAAAAG+GGG | + | chr5_1:55287106-55287125 | None:intergenic | 35.0% |
| !!! | CAATACTTTTGGGACCAAAA+GGG | + | chr5_1:55287107-55287126 | None:intergenic | 35.0% |
| !!! | ACAATACTTTTGGGACCAAA+AGG | + | chr5_1:55287108-55287127 | None:intergenic | 35.0% |
| ! | CATGAGATGGACAATACTTT+TGG | + | chr5_1:55287118-55287137 | None:intergenic | 35.0% |
| CTGTAGTTGTGAAAGATTAG+AGG | - | chr5_1:55287160-55287179 | Msa0737810:intron | 35.0% | |
| CTATAGTATTTCGTATTCCG+AGG | + | chr5_1:55287298-55287317 | None:intergenic | 35.0% | |
| TACGAAATACTATAGACTCG+AGG | - | chr5_1:55287303-55287322 | Msa0737810:CDS | 35.0% | |
| AAATACTATAGACTCGAGGA+CGG | - | chr5_1:55287307-55287326 | Msa0737810:CDS | 35.0% | |
| !! | GAATCTGCTATAATGGATAC+TGG | - | chr5_1:55287355-55287374 | Msa0737810:intron | 35.0% |
| TCTCTGATTGAATGGTATAG+AGG | + | chr5_1:55287391-55287410 | None:intergenic | 35.0% | |
| ! | TCTCTTTCAACAAGAAGCAT+GGG | + | chr5_1:55287454-55287473 | None:intergenic | 35.0% |
| TTCTCTTTCAACAAGAAGCA+TGG | + | chr5_1:55287455-55287474 | None:intergenic | 35.0% | |
| GCACTTAATGATGCTATTGT+TGG | - | chr5_1:55287475-55287494 | Msa0737810:intron | 35.0% | |
| AACAAGAGGTTTATGCCTTT+CGG | - | chr5_1:55287609-55287628 | Msa0737810:intron | 35.0% | |
| ATTCATAGAAGGCCAAGAAT+TGG | - | chr5_1:55287768-55287787 | Msa0737810:intron | 35.0% | |
| TTCTCATGCCTATAAGTCTA+TGG | + | chr5_1:55287797-55287816 | None:intergenic | 35.0% | |
| TTGTTCTATATGGTCTACCA+AGG | - | chr5_1:55287862-55287881 | Msa0737810:intron | 35.0% | |
| CTGCATGCCATAAAAATATC+CGG | + | chr5_1:55288032-55288051 | None:intergenic | 35.0% | |
| GAAGTTGGAATACCAACATA+AGG | + | chr5_1:55288135-55288154 | None:intergenic | 35.0% | |
| AGTCATGTATGCTTAGAAGT+TGG | + | chr5_1:55288150-55288169 | None:intergenic | 35.0% | |
| AATGATTCTTCTCCAGCTTA+TGG | - | chr5_1:55288398-55288417 | Msa0737810:intron | 35.0% | |
| GAACACATGTTCTCTAAGTA+TGG | - | chr5_1:55288518-55288537 | Msa0737810:intron | 35.0% | |
| ATCAGAAGAAGGAGCCATAA+GGG | + | chr5_1:55284451-55284470 | None:intergenic | 40.0% | |
| ! | AACCCAATTGAAGGCATGTT+CGG | + | chr5_1:55284933-55284952 | None:intergenic | 40.0% |
| GTGATCACAAACCCAATTGA+AGG | + | chr5_1:55284942-55284961 | None:intergenic | 40.0% | |
| !! | GAAAATTTGGTGGTGATCAG+GGG | - | chr5_1:55284997-55285016 | Msa0737810:intron | 40.0% |
| TGAAACCAGACTTTCTCTCT+GGG | + | chr5_1:55285039-55285058 | None:intergenic | 40.0% | |
| ATGAAACCAGACTTTCTCTC+TGG | + | chr5_1:55285040-55285059 | None:intergenic | 40.0% | |
| TCATCATTATGATCCTGCAG+AGG | - | chr5_1:55285114-55285133 | Msa0737810:intron | 40.0% | |
| TTCCATTCCCTTGACTAAGA+TGG | - | chr5_1:55285701-55285720 | Msa0737810:CDS | 40.0% | |
| TTCCATCTTAGTCAAGGGAA+TGG | + | chr5_1:55285706-55285725 | None:intergenic | 40.0% | |
| TCCTCTTCCATCTTAGTCAA+GGG | + | chr5_1:55285711-55285730 | None:intergenic | 40.0% | |
| TTCCTCTTCCATCTTAGTCA+AGG | + | chr5_1:55285712-55285731 | None:intergenic | 40.0% | |
| CAGAAGGAGAAAGAGGATTT+AGG | - | chr5_1:55285846-55285865 | Msa0737810:CDS | 40.0% | |
| CTGAAGAAAGTGACATTGCA+TGG | + | chr5_1:55285872-55285891 | None:intergenic | 40.0% | |
| CATTAGCCCATCAAGGATAT+AGG | - | chr5_1:55286006-55286025 | Msa0737810:CDS | 40.0% | |
| ! | TAAAATGGTGCAGGAGCATA+AGG | + | chr5_1:55286101-55286120 | None:intergenic | 40.0% |
| TCATTGGGATAAAATGGTGC+AGG | + | chr5_1:55286110-55286129 | None:intergenic | 40.0% | |
| GCATTGAACAGAAGACTATG+TGG | - | chr5_1:55286212-55286231 | Msa0737810:intron | 40.0% | |
| TTGAACAGAAGACTATGTGG+GGG | - | chr5_1:55286215-55286234 | Msa0737810:intron | 40.0% | |
| TGGAAATTGTTTAGGCTGCA+TGG | - | chr5_1:55286259-55286278 | Msa0737810:intron | 40.0% | |
| TAATGGGAGAATGACAAGAG+TGG | + | chr5_1:55286316-55286335 | None:intergenic | 40.0% | |
| CTTCCCTGACAAAGAAAACT+TGG | + | chr5_1:55286437-55286456 | None:intergenic | 40.0% | |
| TCGGAGACTAGAATGCTAAT+TGG | + | chr5_1:55286637-55286656 | None:intergenic | 40.0% | |
| TTCTAGTCTCCGAATAAAGC+TGG | - | chr5_1:55286644-55286663 | Msa0737810:intron | 40.0% | |
| GTCAACTCCTGTCTATCAAT+TGG | - | chr5_1:55286745-55286764 | Msa0737810:intron | 40.0% | |
| TGTTAGGCCAATTGATAGAC+AGG | + | chr5_1:55286755-55286774 | None:intergenic | 40.0% | |
| GGCCTAACATCTTCACATTT+AGG | - | chr5_1:55286766-55286785 | Msa0737810:intron | 40.0% | |
| GGCCTAAATGTGAAGATGTT+AGG | + | chr5_1:55286771-55286790 | None:intergenic | 40.0% | |
| ATAGACACATGTTGCACAAG+TGG | - | chr5_1:55286828-55286847 | Msa0737810:intron | 40.0% | |
| ! | TAAGCACTTTTGAGCCTGTT+TGG | + | chr5_1:55286970-55286989 | None:intergenic | 40.0% |
| CAGATTCCTATAAATGCTGC+TGG | - | chr5_1:55287059-55287078 | Msa0737810:CDS | 40.0% | |
| TTATCTTCCTCTTGAAGCCT+CGG | - | chr5_1:55287278-55287297 | Msa0737810:CDS | 40.0% | |
| AATACTATAGACTCGAGGAC+GGG | - | chr5_1:55287308-55287327 | Msa0737810:CDS | 40.0% | |
| GTGCATGGAATCTGCTATAA+TGG | - | chr5_1:55287348-55287367 | Msa0737810:intron | 40.0% | |
| !! | AACCTCTTGTTTCTGGCAAA+TGG | + | chr5_1:55287600-55287619 | None:intergenic | 40.0% |
| ! | AGGCATAAACCTCTTGTTTC+TGG | + | chr5_1:55287607-55287626 | None:intergenic | 40.0% |
| ATTGGAGGCCATAGACTTAT+AGG | - | chr5_1:55287786-55287805 | Msa0737810:intron | 40.0% | |
| ATGGTCTACCAAGGTAACTA+TGG | - | chr5_1:55287871-55287890 | Msa0737810:intron | 40.0% | |
| AACTATGGACAGTGGAAACT+TGG | - | chr5_1:55287886-55287905 | Msa0737810:intron | 40.0% | |
| !! | CGGATATTTTTATGGCATGC+AGG | - | chr5_1:55288030-55288049 | Msa0737810:CDS | 40.0% |
| GTCAGGTTCTGTCATATATG+TGG | - | chr5_1:55288237-55288256 | Msa0737810:intron | 40.0% | |
| !! | ATGCAATGAGAGTTTGTTGC+TGG | + | chr5_1:55288281-55288300 | None:intergenic | 40.0% |
| AGCAACAAACTCTCATTGCA+TGG | - | chr5_1:55288280-55288299 | Msa0737810:intron | 40.0% | |
| AGACTTTGCACCTTTCTTTG+AGG | + | chr5_1:55288333-55288352 | None:intergenic | 40.0% | |
| CTCGAACATATTCGTTTGAC+TGG | - | chr5_1:55288476-55288495 | Msa0737810:intron | 40.0% | |
| TTATCCAACTTGGTCTCTTG+TGG | - | chr5_1:55288597-55288616 | Msa0737810:intron | 40.0% | |
| ! | GTGGATTGCTTCAAAACTCA+AGG | - | chr5_1:55288616-55288635 | Msa0737810:intron | 40.0% |
| AGGCTCGAACAACTTCTATA+TGG | - | chr5_1:55288646-55288665 | Msa0737810:intron | 40.0% | |
| AACTTCTATATGGTCCTGTG+AGG | - | chr5_1:55288656-55288675 | Msa0737810:intron | 40.0% | |
| GATCAGAAGAAGGAGCCATA+AGG | + | chr5_1:55284452-55284471 | None:intergenic | 45.0% | |
| ACACCGAACATGCCTTCAAT+TGG | - | chr5_1:55284927-55284946 | Msa0737810:CDS | 45.0% | |
| CACCGAACATGCCTTCAATT+GGG | - | chr5_1:55284928-55284947 | Msa0737810:CDS | 45.0% | |
| TTCAAAGGTGGGTCCAATAG+AGG | - | chr5_1:55285079-55285098 | Msa0737810:CDS | 45.0% | |
| CATTATGATCCTGCAGAGGA+AGG | - | chr5_1:55285118-55285137 | Msa0737810:intron | 45.0% | |
| ACATATGTGCAACTAAGGGG+AGG | + | chr5_1:55285309-55285328 | None:intergenic | 45.0% | |
| GATTTGTAAGAGGATCACCG+TGG | + | chr5_1:55285446-55285465 | None:intergenic | 45.0% | |
| TCCCTTGACTAAGATGGAAG+AGG | - | chr5_1:55285707-55285726 | Msa0737810:CDS | 45.0% | |
| TAGAGCTCAGAAGGAGAAAG+AGG | - | chr5_1:55285839-55285858 | Msa0737810:CDS | 45.0% | |
| TAGCCCATCAAGGATATAGG+TGG | - | chr5_1:55286009-55286028 | Msa0737810:CDS | 45.0% | |
| AGCCCATCAAGGATATAGGT+GGG | - | chr5_1:55286010-55286029 | Msa0737810:CDS | 45.0% | |
| ! | AGTATAGATGCCACCCCTTT+TGG | - | chr5_1:55287090-55287109 | Msa0737810:CDS | 45.0% |
| AAGCTTGTGCTTAGAGTGCA+TGG | - | chr5_1:55287333-55287352 | Msa0737810:intron | 45.0% | |
| CACCATTTGCCAGAAACAAG+AGG | - | chr5_1:55287595-55287614 | Msa0737810:intron | 45.0% | |
| ! | TCACAGTTTGCTCTTCCGAA+AGG | + | chr5_1:55287627-55287646 | None:intergenic | 45.0% |
| CATAGAAGGCCAAGAATTGG+AGG | - | chr5_1:55287771-55287790 | Msa0737810:intron | 45.0% | |
| AGTCTATGGCCTCCAATTCT+TGG | + | chr5_1:55287783-55287802 | None:intergenic | 45.0% | |
| ACCAAGGTAACTATGGACAG+TGG | - | chr5_1:55287878-55287897 | Msa0737810:intron | 45.0% | |
| TCCACTGTCCATAGTTACCT+TGG | + | chr5_1:55287882-55287901 | None:intergenic | 45.0% | |
| ATGGCATGCAGGTTACTAAC+AGG | - | chr5_1:55288041-55288060 | Msa0737810:CDS | 45.0% | |
| CCATGCATGCATCAACTCAT+GGG | + | chr5_1:55288078-55288097 | None:intergenic | 45.0% | |
| ACCATGCATGCATCAACTCA+TGG | + | chr5_1:55288079-55288098 | None:intergenic | 45.0% | |
| CATGCATGGTTACGCCTTAA+AGG | - | chr5_1:55288089-55288108 | Msa0737810:CDS | 45.0% | |
| CAATCTCAGTCCTGAAGTAG+AGG | - | chr5_1:55288205-55288224 | Msa0737810:intron | 45.0% | |
| CATATGCCTTCCTCTACTTC+AGG | + | chr5_1:55288218-55288237 | None:intergenic | 45.0% | |
| ! | AGTAGAGGAAGGCATATGTC+AGG | - | chr5_1:55288220-55288239 | Msa0737810:intron | 45.0% |
| GCTGCTTCTTCCTCAAAGAA+AGG | - | chr5_1:55288320-55288339 | Msa0737810:intron | 45.0% | |
| GATTCTTCTCCAGCTTATGG+TGG | - | chr5_1:55288401-55288420 | Msa0737810:intron | 45.0% | |
| CTAAAACCACCACCATAAGC+TGG | + | chr5_1:55288413-55288432 | None:intergenic | 45.0% | |
| CAATCCACAAGAGACCAAGT+TGG | + | chr5_1:55288604-55288623 | None:intergenic | 45.0% | |
| TCAAAACTCAAGGCAGAGAG+AGG | - | chr5_1:55288626-55288645 | Msa0737810:intron | 45.0% | |
| TTGTACTCTGACATCCTCAC+AGG | + | chr5_1:55288673-55288692 | None:intergenic | 45.0% | |
| AGAGTGAGGGAAGAAGGAAG+AGG | + | chr5_1:55284428-55284447 | None:intergenic | 50.0% | |
| TAAGGGAGAGTGAGGGAAGA+AGG | + | chr5_1:55284434-55284453 | None:intergenic | 50.0% | |
| TCTTCCCTCACTCTCCCTTA+TGG | - | chr5_1:55284434-55284453 | Msa0737810:three_prime_UTR | 50.0% | |
| TCACACCCAGAGAGAAAGTC+TGG | - | chr5_1:55285031-55285050 | Msa0737810:intron | 50.0% | |
| AAGGTGGGTCCAATAGAGGA+AGG | - | chr5_1:55285083-55285102 | Msa0737810:CDS | 50.0% | |
| ACGACCACTCCTTCCTCTAT+TGG | + | chr5_1:55285095-55285114 | None:intergenic | 50.0% | |
| TGTCGTGAACATTAGCGCAG+TGG | + | chr5_1:55285546-55285565 | None:intergenic | 50.0% | |
| TGATCGTGCTAGAGCTCAGA+AGG | - | chr5_1:55285830-55285849 | Msa0737810:CDS | 50.0% | |
| GCCCATCAAGGATATAGGTG+GGG | - | chr5_1:55286011-55286030 | Msa0737810:CDS | 50.0% | |
| CCCCCACCTATATCCTTGAT+GGG | + | chr5_1:55286015-55286034 | None:intergenic | 50.0% | |
| CCCATCAAGGATATAGGTGG+GGG | - | chr5_1:55286012-55286031 | Msa0737810:CDS | 50.0% | |
| CCATCAAGGATATAGGTGGG+GGG | - | chr5_1:55286013-55286032 | Msa0737810:CDS | 50.0% | |
| CATCAAGGATATAGGTGGGG+GGG | - | chr5_1:55286014-55286033 | Msa0737810:CDS | 50.0% | |
| ! | ATGGTGCAGGAGCATAAGGA+GGG | + | chr5_1:55286097-55286116 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGAGCATAAGG+AGG | + | chr5_1:55286098-55286117 | None:intergenic | 50.0% |
| !!! | ACTTTTGGGACCAAAAGGGG+TGG | + | chr5_1:55287103-55287122 | None:intergenic | 50.0% |
| TCGTATTCCGAGGCTTCAAG+AGG | + | chr5_1:55287288-55287307 | None:intergenic | 50.0% | |
| !! | CCCATGAGTTGATGCATGCA+TGG | - | chr5_1:55288075-55288094 | Msa0737810:CDS | 50.0% |
| CTCAGTCCTGAAGTAGAGGA+AGG | - | chr5_1:55288209-55288228 | Msa0737810:intron | 50.0% | |
| TCTTCTCCAGCTTATGGTGG+TGG | - | chr5_1:55288404-55288423 | Msa0737810:intron | 50.0% | |
| GGAGCCATAAGGGAGAGTGA+GGG | + | chr5_1:55284441-55284460 | None:intergenic | 55.0% | |
| AGGAGCCATAAGGGAGAGTG+AGG | + | chr5_1:55284442-55284461 | None:intergenic | 55.0% | |
| GGGTCCAATAGAGGAAGGAG+TGG | - | chr5_1:55285088-55285107 | Msa0737810:CDS | 55.0% | |
| CAAGACATGCCTTCCTCTGC+AGG | + | chr5_1:55285130-55285149 | None:intergenic | 55.0% | |
| ! | CTGCAGAGGAAGGCATGTCT+TGG | - | chr5_1:55285128-55285147 | Msa0737810:intron | 55.0% |
| ! | GCGTGCTCCATCTAGAGCTT+TGG | - | chr5_1:55285150-55285169 | Msa0737810:intron | 55.0% |
| CCCCCCACCTATATCCTTGA+TGG | + | chr5_1:55286016-55286035 | None:intergenic | 55.0% | |
| ACTATGTGGGGGCTGCAATC+AGG | - | chr5_1:55286226-55286245 | Msa0737810:intron | 55.0% | |
| ! | GAGTGGCATCGAAAGCAGTC+TGG | + | chr5_1:55286299-55286318 | None:intergenic | 55.0% |
| ACTACCTCGCGCTCGGTAAT+GGG | + | chr5_1:55286332-55286351 | None:intergenic | 55.0% | |
| AACTACCTCGCGCTCGGTAA+TGG | + | chr5_1:55286333-55286352 | None:intergenic | 55.0% | |
| GGATCAAACTACCTCGCGCT+CGG | + | chr5_1:55286339-55286358 | None:intergenic | 55.0% | |
| TGAGGAAGAAGCAGCAGCTG+TGG | + | chr5_1:55288315-55288334 | None:intergenic | 55.0% | |
| TTCTCCCATTACCGAGCGCG+AGG | - | chr5_1:55286325-55286344 | Msa0737810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 55284385 | 55288793 | 55284385 | ID=Msa0737810;Name=Msa0737810 |
| chr5_1 | mRNA | 55284385 | 55288793 | 55284385 | ID=Msa0737810-mRNA-1;Parent=Msa0737810;Name=Msa0737810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|0.90|0.83|1|0.81|0.83|12|279|491 |
| chr5_1 | exon | 55284385 | 55284980 | 55284385 | ID=Msa0737810-mRNA-1:exon:15580;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55285068 | 55285126 | 55285068 | ID=Msa0737810-mRNA-1:exon:15579;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55285295 | 55285410 | 55285295 | ID=Msa0737810-mRNA-1:exon:15578;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55285527 | 55285589 | 55285527 | ID=Msa0737810-mRNA-1:exon:15577;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55285671 | 55285883 | 55285671 | ID=Msa0737810-mRNA-1:exon:15576;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55285997 | 55286081 | 55285997 | ID=Msa0737810-mRNA-1:exon:15575;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55286660 | 55286739 | 55286660 | ID=Msa0737810-mRNA-1:exon:15574;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55286832 | 55286955 | 55286832 | ID=Msa0737810-mRNA-1:exon:15573;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55287043 | 55287166 | 55287043 | ID=Msa0737810-mRNA-1:exon:15572;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55287263 | 55287350 | 55287263 | ID=Msa0737810-mRNA-1:exon:15571;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55288007 | 55288161 | 55288007 | ID=Msa0737810-mRNA-1:exon:15570;Parent=Msa0737810-mRNA-1 |
| chr5_1 | exon | 55288674 | 55288793 | 55288674 | ID=Msa0737810-mRNA-1:exon:15569;Parent=Msa0737810-mRNA-1 |
| chr5_1 | five_prime_UTR | 55288726 | 55288793 | 55288726 | ID=Msa0737810-mRNA-1:five_prime_utr;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55288674 | 55288725 | 55288674 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55288007 | 55288161 | 55288007 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55287263 | 55287350 | 55287263 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55287043 | 55287166 | 55287043 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55286832 | 55286955 | 55286832 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55286660 | 55286739 | 55286660 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55285997 | 55286081 | 55285997 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55285671 | 55285883 | 55285671 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55285527 | 55285589 | 55285527 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55285295 | 55285410 | 55285295 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55285068 | 55285126 | 55285068 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | CDS | 55284664 | 55284980 | 55284664 | ID=Msa0737810-mRNA-1:cds;Parent=Msa0737810-mRNA-1 |
| chr5_1 | three_prime_UTR | 55284385 | 55284663 | 55284385 | ID=Msa0737810-mRNA-1:three_prime_utr;Parent=Msa0737810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
