AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817280 MtrunA17_Chr5g0436051 95.833 504 8 1 1 491 113 616 0.0 1013
Msa0817280 MtrunA17_Chr3g0112601 70.986 517 120 6 1 491 1 513 0.0 739
Msa0817280 MtrunA17_Chr1g0154501 50.731 479 205 8 32 490 1 468 3.53e-166 478
Msa0817280 MtrunA17_Chr8g0373781 49.813 536 187 10 32 490 1 531 7.26e-165 476
Msa0817280 MtrunA17_Chr5g0403301 56.357 291 99 3 207 490 37 306 3.80e-109 326
Msa0817280 MtrunA17_Chr5g0403261 37.228 368 137 8 32 307 1 366 2.95e-74 238
Msa0817280 MtrunA17_Chr5g0403271 64.706 153 49 1 343 490 1 153 1.58e-59 192
Msa0817280 MtrunA17_Chr5g0403291 57.576 66 28 0 141 206 382 447 1.48e-20 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817280 AT2G39830.1 64.648 512 149 9 8 491 21 528 0.0 639
Msa0817280 AT2G39830.2 64.272 515 149 10 8 491 21 531 0.0 634
Msa0817280 AT2G39830.3 64.244 509 147 9 8 491 21 519 0.0 630
Msa0817280 AT2G39830.4 62.175 423 132 8 8 406 21 439 5.94e-179 509
Msa0817280 AT4G36860.1 59.145 421 144 5 92 490 139 553 2.30e-168 486
Msa0817280 AT4G36860.3 59.145 421 144 5 92 490 163 577 2.79e-168 487
Msa0817280 AT1G19270.1 46.154 533 213 7 32 491 1 532 1.00e-160 466
Msa0817280 AT1G19270.2 46.154 533 213 7 32 491 1 532 1.00e-160 466
Msa0817280 AT4G36860.2 58.075 322 109 4 92 393 139 454 6.40e-127 377
Msa0817280 AT5G66610.3 50.847 354 161 5 142 484 73 424 4.82e-115 346
Msa0817280 AT5G66620.1 49.722 360 159 5 142 483 285 640 8.95e-115 352
Msa0817280 AT5G66620.3 42.418 455 231 7 56 483 181 631 2.26e-114 351
Msa0817280 AT5G66620.4 42.418 455 231 7 56 483 181 631 2.26e-114 351
Msa0817280 AT5G66610.1 50.847 354 161 5 142 484 200 551 4.05e-114 348
Msa0817280 AT5G66610.2 47.244 381 161 6 142 484 200 578 2.37e-108 334
Msa0817280 AT5G66630.1 46.667 360 167 7 142 483 346 698 1.88e-102 322
Msa0817280 AT5G66640.1 45.869 351 160 6 161 483 90 438 7.75e-94 292
Msa0817280 AT5G66640.7 45.869 351 160 6 161 483 90 438 7.75e-94 292
Msa0817280 AT5G17890.1 47.527 364 166 7 143 483 1240 1601 2.24e-93 310
Msa0817280 AT5G66640.4 45.869 351 160 6 161 483 121 469 3.35e-93 291
Msa0817280 AT5G66640.5 45.869 351 160 6 161 483 122 470 3.56e-93 291
Msa0817280 AT5G66640.3 46.769 325 145 5 187 483 7 331 5.33e-90 278
Msa0817280 AT5G66640.2 41.595 351 171 8 161 483 121 465 9.62e-77 249
Msa0817280 AT5G66640.6 41.311 351 172 7 161 483 122 466 9.67e-77 249
Msa0817280 AT5G66620.2 45.291 223 107 4 142 353 276 494 1.71e-62 212

Find 127 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGCAAACTTCACATTT+TGG 0.182828 5_3:+52275506 None:intergenic
AGGCATAAACCTCTTGTTTC+TGG 0.186251 5_3:+52274398 None:intergenic
AATATGTGTATATACCTTTA+AGG 0.205624 5_3:+52273899 None:intergenic
GTCTCATGTTGAAAACAAAT+TGG 0.214527 5_3:-52273653 Msa0817280:CDS
TTAAAACAAGATTTGTGATA+TGG 0.216060 5_3:+52275542 None:intergenic
TCTTCCCTCACTCTCCCTTA+TGG 0.245389 5_3:-52277568 Msa0817280:exon
CTGTATTCATTGGGATAAAA+TGG 0.256062 5_3:+52275889 None:intergenic
AATGAAGCTGTTAATAAATA+TGG 0.258522 5_3:-52273562 Msa0817280:CDS
ACAGCAATTCTTGTTCTATA+TGG 0.261118 5_3:-52274150 Msa0817280:CDS
CATGAGATGGACAATACTTT+TGG 0.265205 5_3:+52274887 None:intergenic
CATGCATGGTTACGCCTTAA+AGG 0.286050 5_3:-52273913 Msa0817280:intron
AGTATAGATGCCACCCCTTT+TGG 0.293022 5_3:-52274912 Msa0817280:intron
GGAGAAAATGATGAAGATTA+TGG 0.298017 5_3:-52275967 Msa0817280:CDS
AATGATTCTTCTCCAGCTTA+TGG 0.306927 5_3:-52273604 Msa0817280:CDS
CTTTCTCATCCATGTATATA+TGG 0.313577 5_3:-52277519 Msa0817280:intron
ATTGGAGGCCATAGACTTAT+AGG 0.316467 5_3:-52274216 Msa0817280:CDS
GAACACATGTTCTCTAAGTA+TGG 0.327365 5_3:-52273484 Msa0817280:three_prime_UTR
AAGATTTCACCTGTATTCAT+TGG 0.335163 5_3:+52275879 None:intergenic
AACTACCTCGCGCTCGGTAA+TGG 0.338884 5_3:+52275672 None:intergenic
GAAAGTCTGGTTTCATGAAA+TGG 0.348540 5_3:-52276958 Msa0817280:CDS
AACAAGAGGTTTATGCCTTT+CGG 0.351720 5_3:-52274393 Msa0817280:CDS
ACGACCACTCCTTCCTCTAT+TGG 0.353168 5_3:+52276910 None:intergenic
GTGCATGGAATCTGCTATAA+TGG 0.356084 5_3:-52274654 Msa0817280:CDS
ACTACCTCGCGCTCGGTAAT+GGG 0.362527 5_3:+52275673 None:intergenic
ATAATCTATGGAAATTGTTT+AGG 0.366827 5_3:-52275751 Msa0817280:CDS
AGTCTATGGCCTCCAATTCT+TGG 0.369796 5_3:+52274222 None:intergenic
CAGAAGGAGAAAGAGGATTT+AGG 0.374040 5_3:-52276156 Msa0817280:CDS
GCACTTAATGATGCTATTGT+TGG 0.375277 5_3:-52274527 Msa0817280:CDS
ATGAAACCAGACTTTCTCTC+TGG 0.376624 5_3:+52276965 None:intergenic
TTCTCATGCCTATAAGTCTA+TGG 0.380772 5_3:+52274208 None:intergenic
AACCTCTTGTTTCTGGCAAA+TGG 0.381781 5_3:+52274405 None:intergenic
AATAATAAGCTAAATACATT+AGG 0.385158 5_3:+52273274 None:intergenic
CATTAGCCCATCAAGGATAT+AGG 0.386946 5_3:-52275996 Msa0817280:intron
ATTGTTCTACAAGTGACTAT+TGG 0.392656 5_3:-52273434 Msa0817280:three_prime_UTR
ATGGCATGCAGGTTACTAAC+AGG 0.396063 5_3:-52273961 Msa0817280:intron
CTCGAACATATTCGTTTGAC+TGG 0.400738 5_3:-52273526 Msa0817280:CDS
CATAATAATCTCTGATTGAA+TGG 0.404836 5_3:+52274606 None:intergenic
CTGTAGTTGTGAAAGATTAG+AGG 0.408619 5_3:-52274842 Msa0817280:intron
TGCAATCAGGAGATAATCTA+TGG 0.410658 5_3:-52275763 Msa0817280:CDS
AGGCTCGAACAACTTCTATA+TGG 0.413581 5_3:-52273356 Msa0817280:three_prime_UTR
TGTTGTTTCAGATTCATAGA+AGG 0.415721 5_3:-52274245 Msa0817280:intron
TTGTTTACCAAAGCTCTAGA+TGG 0.420805 5_3:+52276845 None:intergenic
GAATCTGCTATAATGGATAC+TGG 0.421279 5_3:-52274647 Msa0817280:CDS
ATTCATAGAAGGCCAAGAAT+TGG 0.426756 5_3:-52274234 Msa0817280:CDS
AGATTTCACCTGTATTCATT+GGG 0.428419 5_3:+52275880 None:intergenic
TTATCCAACTTGGTCTCTTG+TGG 0.433491 5_3:-52273405 Msa0817280:three_prime_UTR
CATATGCCTTCCTCTACTTC+AGG 0.435073 5_3:+52273787 None:intergenic
TTCAAAGGTGGGTCCAATAG+AGG 0.438064 5_3:-52276923 Msa0817280:CDS
ATCAGAAGAAGGAGCCATAA+GGG 0.441052 5_3:+52277554 None:intergenic
TCAATCAGAGATTATTATGA+AGG 0.445893 5_3:-52274602 Msa0817280:CDS
CAAGACATGCCTTCCTCTGC+AGG 0.450171 5_3:+52276875 None:intergenic
TCTTCTCCAGCTTATGGTGG+TGG 0.452845 5_3:-52273598 Msa0817280:CDS
TCTCATGTTGAAAACAAATT+GGG 0.452858 5_3:-52273652 Msa0817280:CDS
GCGTGCTCCATCTAGAGCTT+TGG 0.454192 5_3:-52276852 Msa0817280:intron
TAAAATGGTGCAGGAGCATA+AGG 0.458370 5_3:+52275904 None:intergenic
TCACACCCAGAGAGAAAGTC+TGG 0.460029 5_3:-52276971 Msa0817280:CDS
TAAGGGAGAGTGAGGGAAGA+AGG 0.460899 5_3:+52277571 None:intergenic
AGACTTTGCACCTTTCTTTG+AGG 0.470152 5_3:+52273672 None:intergenic
GAGTGGCATCGAAAGCAGTC+TGG 0.476246 5_3:+52275706 None:intergenic
ATGCAATGAGAGTTTGTTGC+TGG 0.480588 5_3:+52273724 None:intergenic
TGGAAATTGTTTAGGCTGCA+TGG 0.497463 5_3:-52275743 Msa0817280:CDS
GATCAGAAGAAGGAGCCATA+AGG 0.497642 5_3:+52277553 None:intergenic
GAAGATATGAAGAGACCAAA+TGG 0.499622 5_3:-52276108 Msa0817280:intron
TTCTCTTTCAACAAGAAGCA+TGG 0.501914 5_3:+52274550 None:intergenic
CTAAAACCACCACCATAAGC+TGG 0.509878 5_3:+52273592 None:intergenic
CTGCAGAGGAAGGCATGTCT+TGG 0.516391 5_3:-52276874 Msa0817280:CDS
TAGAGCTCAGAAGGAGAAAG+AGG 0.516816 5_3:-52276163 Msa0817280:CDS
ACCATGCATGCATCAACTCA+TGG 0.520688 5_3:+52273926 None:intergenic
TGATCGTGCTAGAGCTCAGA+AGG 0.527771 5_3:-52276172 Msa0817280:CDS
TTATTTGCATTAGCCCATCA+AGG 0.527904 5_3:-52276003 Msa0817280:intron
TCTCTGATTGAATGGTATAG+AGG 0.533543 5_3:+52274614 None:intergenic
AGGAGCCATAAGGGAGAGTG+AGG 0.534142 5_3:+52277563 None:intergenic
GTGGATTGCTTCAAAACTCA+AGG 0.534190 5_3:-52273386 Msa0817280:three_prime_UTR
GGATCAAACTACCTCGCGCT+CGG 0.536169 5_3:+52275666 None:intergenic
GCTGCTTCTTCCTCAAAGAA+AGG 0.536522 5_3:-52273682 Msa0817280:CDS
AGAGTGAGGGAAGAAGGAAG+AGG 0.536709 5_3:+52277577 None:intergenic
CATAGAAGGCCAAGAATTGG+AGG 0.541624 5_3:-52274231 Msa0817280:CDS
GTCAGGTTCTGTCATATATG+TGG 0.544593 5_3:-52273765 Msa0817280:CDS
TCTCTTTCAACAAGAAGCAT+GGG 0.545613 5_3:+52274551 None:intergenic
AAGCTTGTGCTTAGAGTGCA+TGG 0.547235 5_3:-52274669 Msa0817280:CDS
CCCATCAAGGATATAGGTGG+GGG 0.548766 5_3:-52275990 Msa0817280:CDS
CACCATTTGCCAGAAACAAG+AGG 0.548780 5_3:-52274407 Msa0817280:CDS
TCATTGGGATAAAATGGTGC+AGG 0.553987 5_3:+52275895 None:intergenic
TGAAACCAGACTTTCTCTCT+GGG 0.553994 5_3:+52276966 None:intergenic
CATTATGATCCTGCAGAGGA+AGG 0.555932 5_3:-52276884 Msa0817280:CDS
AACATGTGTTCTTATTACAC+AGG 0.561919 5_3:+52273496 None:intergenic
GATTCTTCTCCAGCTTATGG+TGG 0.562395 5_3:-52273601 Msa0817280:CDS
AGTAGAGGAAGGCATATGTC+AGG 0.562990 5_3:-52273782 Msa0817280:CDS
CTATAGTATTTCGTATTCCG+AGG 0.568127 5_3:+52274707 None:intergenic
CCATGCATGCATCAACTCAT+GGG 0.575521 5_3:+52273927 None:intergenic
AGCCCATCAAGGATATAGGT+GGG 0.576893 5_3:-52275992 Msa0817280:CDS
CCCATGAGTTGATGCATGCA+TGG 0.580940 5_3:-52273927 Msa0817280:CDS
AGCAACAAACTCTCATTGCA+TGG 0.581985 5_3:-52273722 Msa0817280:CDS
TCACAGTTTGCTCTTCCGAA+AGG 0.583186 5_3:+52274378 None:intergenic
CTGAAGAAAGTGACATTGCA+TGG 0.583861 5_3:+52276133 None:intergenic
AAATGATGAAGATTATGGAA+AGG 0.584158 5_3:-52275962 Msa0817280:CDS
GTATTGTCATATTCATGAGA+TGG 0.585321 5_3:+52274874 None:intergenic
GCCCATCAAGGATATAGGTG+GGG 0.591148 5_3:-52275991 Msa0817280:CDS
CAATCTCAGTCCTGAAGTAG+AGG 0.592599 5_3:-52273797 Msa0817280:CDS
TGAGGAAGAAGCAGCAGCTG+TGG 0.594186 5_3:+52273690 None:intergenic
TAGCCCATCAAGGATATAGG+TGG 0.597899 5_3:-52275993 Msa0817280:CDS
TGATTGATATGATCAGAAGA+AGG 0.604305 5_3:+52277543 None:intergenic
CATCAAGGATATAGGTGGGG+GGG 0.609524 5_3:-52275988 Msa0817280:CDS
CATTGAACAGAAGACTATGT+GGG 0.609543 5_3:-52275789 Msa0817280:intron
TCAAAACTCAAGGCAGAGAG+AGG 0.611009 5_3:-52273376 Msa0817280:three_prime_UTR
AATACTATAGACTCGAGGAC+GGG 0.611229 5_3:-52274694 Msa0817280:CDS
CTCAGTCCTGAAGTAGAGGA+AGG 0.619865 5_3:-52273793 Msa0817280:CDS
TTGTACTCTGACATCCTCAC+AGG 0.622459 5_3:+52273332 None:intergenic
CAATCCACAAGAGACCAAGT+TGG 0.625624 5_3:+52273401 None:intergenic
AATGGTGCAGGAGCATAAGG+AGG 0.625823 5_3:+52275907 None:intergenic
AGTAAAGTACCATATATACA+TGG 0.626223 5_3:+52277510 None:intergenic
TTCTCCCATTACCGAGCGCG+AGG 0.628667 5_3:-52275677 Msa0817280:intron
AAGGTGGGTCCAATAGAGGA+AGG 0.645391 5_3:-52276919 Msa0817280:CDS
GGAGCCATAAGGGAGAGTGA+GGG 0.648423 5_3:+52277564 None:intergenic
ATTGAACAGAAGACTATGTG+GGG 0.648467 5_3:-52275788 Msa0817280:intron
AAATACTATAGACTCGAGGA+CGG 0.654015 5_3:-52274695 Msa0817280:CDS
GCATTGAACAGAAGACTATG+TGG 0.658253 5_3:-52275790 Msa0817280:intron
TTGTTCTATATGGTCTACCA+AGG 0.659611 5_3:-52274140 Msa0817280:intron
AACTTCTATATGGTCCTGTG+AGG 0.664585 5_3:-52273346 Msa0817280:three_prime_UTR
ACATGTGTTCTTATTACACA+GGG 0.664721 5_3:+52273497 None:intergenic
GGGTCCAATAGAGGAAGGAG+TGG 0.672837 5_3:-52276914 Msa0817280:CDS
ATGGTGCAGGAGCATAAGGA+GGG 0.678829 5_3:+52275908 None:intergenic
CCATCAAGGATATAGGTGGG+GGG 0.680331 5_3:-52275989 Msa0817280:CDS
TAATGGGAGAATGACAAGAG+TGG 0.685159 5_3:+52275689 None:intergenic
TACGAAATACTATAGACTCG+AGG 0.695310 5_3:-52274699 Msa0817280:CDS
TCATCATTATGATCCTGCAG+AGG 0.695986 5_3:-52276888 Msa0817280:CDS
TTGAACAGAAGACTATGTGG+GGG 0.724066 5_3:-52275787 Msa0817280:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATAATTGAATATAATA+TGG + chr5_3:52274582-52274601 None:intergenic 10.0%
!!! TTTTGTAATTTTTCTTAAGT+GGG + chr5_3:52273471-52273490 None:intergenic 15.0%
!!! TTTTTGTAATTTTTCTTAAG+TGG + chr5_3:52273472-52273491 None:intergenic 15.0%
!!! TTTCATTTGATTTCATTAAA+AGG - chr5_3:52273532-52273551 Msa0817280:CDS 15.0%
!!! TTCATTTGATTTCATTAAAA+GGG - chr5_3:52273533-52273552 Msa0817280:CDS 15.0%
!!! ATACTTTTTTGACTTATTTT+TGG - chr5_3:52274439-52274458 Msa0817280:intron 15.0%
!!! TTTTTTTTTTTTTTGACTCA+AGG - chr5_3:52274615-52274634 Msa0817280:CDS 15.0%
!!! ATTTTGCTATCATTTATAAT+TGG - chr5_3:52275020-52275039 Msa0817280:intron 15.0%
!! TATAGATTAAAGTTATTCAT+TGG + chr5_3:52276085-52276104 None:intergenic 15.0%
!!! TAAAATTGAAATGTTTTTAC+CGG - chr5_3:52276856-52276875 Msa0817280:CDS 15.0%
!! AATAATAAGCTAAATACATT+AGG + chr5_3:52277577-52277596 None:intergenic 15.0%
!! AGTTCAAATAATAGTTTCAT+GGG + chr5_3:52273505-52273524 None:intergenic 20.0%
!! AAGTTCAAATAATAGTTTCA+TGG + chr5_3:52273506-52273525 None:intergenic 20.0%
!!! TTTTCATATGAATCCAAAAA+AGG - chr5_3:52273602-52273621 Msa0817280:CDS 20.0%
!! CTTATTGAATCATGAAAATT+TGG - chr5_3:52273830-52273849 Msa0817280:intron 20.0%
!! GTATTATTTGGACTAATAAT+TGG - chr5_3:52274507-52274526 Msa0817280:intron 20.0%
!! ACAATACTATTGATGTAATT+AGG - chr5_3:52274652-52274671 Msa0817280:CDS 20.0%
!! ATAATCTATGGAAATTGTTT+AGG - chr5_3:52275097-52275116 Msa0817280:intron 20.0%
!! TTAAAACAAGATTTGTGATA+TGG + chr5_3:52275309-52275328 None:intergenic 20.0%
!! AATTATGAAACAATTTAGAG+TGG + chr5_3:52276046-52276065 None:intergenic 20.0%
!! AACAATATAGAGTAATTAAG+AGG + chr5_3:52276407-52276426 None:intergenic 20.0%
!!! TGATCTACAATTTTTTCATA+AGG + chr5_3:52276780-52276799 None:intergenic 20.0%
!!! TAAATTGATGATTCACTAAA+TGG + chr5_3:52276812-52276831 None:intergenic 20.0%
!! AATATGTGTATATACCTTTA+AGG + chr5_3:52276952-52276971 None:intergenic 20.0%
!! AATGAAGCTGTTAATAAATA+TGG - chr5_3:52277286-52277305 Msa0817280:intron 20.0%
!! AGTAAAGTACCATATATACA+TGG + chr5_3:52273341-52273360 None:intergenic 25.0%
! TTTGAATATCAAAGTGCATA+AGG + chr5_3:52273419-52273438 None:intergenic 25.0%
! TTGGAGTAAAATTGTGTAAA+GGG + chr5_3:52273448-52273467 None:intergenic 25.0%
! ATGAATGTAATAACATGTGT+CGG - chr5_3:52273734-52273753 Msa0817280:CDS 25.0%
! ATTGAATCATGAAAATTTGG+TGG - chr5_3:52273833-52273852 Msa0817280:intron 25.0%
! TGAAGAAAAATGAAATTGAG+TGG + chr5_3:52274031-52274050 None:intergenic 25.0%
!!! TGATTCTTGTTTGTTATGAA+TGG - chr5_3:52274067-52274086 Msa0817280:intron 25.0%
!!! TGTGTGATTTTTTAGAAACA+TGG - chr5_3:52274202-52274221 Msa0817280:CDS 25.0%
! CTTATTATGTACTAAATCCA+CGG - chr5_3:52274272-52274291 Msa0817280:intron 25.0%
!! ATTATTTGGTGATTTGTAAG+AGG + chr5_3:52274302-52274321 None:intergenic 25.0%
! GCGTTAACATAGTAATTATT+TGG + chr5_3:52274316-52274335 None:intergenic 25.0%
!!! AGTATACTTTCTAAAGTTTG+AGG + chr5_3:52274424-52274443 None:intergenic 25.0%
! AAGTGAGACTTAGTATTATT+TGG - chr5_3:52274495-52274514 Msa0817280:intron 25.0%
! AAAATTAAGTACCAACCATT+TGG + chr5_3:52274758-52274777 None:intergenic 25.0%
! AAATGATGAAGATTATGGAA+AGG - chr5_3:52274886-52274905 Msa0817280:CDS 25.0%
! CAACAAACAAAAAAATAGTC+AGG + chr5_3:52275258-52275277 None:intergenic 25.0%
! CTAATGTCATAGTTCTTATA+AGG + chr5_3:52275445-52275464 None:intergenic 25.0%
! GAAGTAAATTATCAATGAGA+GGG + chr5_3:52275545-52275564 None:intergenic 25.0%
! TGAAGTAAATTATCAATGAG+AGG + chr5_3:52275546-52275565 None:intergenic 25.0%
!!! AAGTTATTCATTGGTTGTTT+TGG + chr5_3:52276076-52276095 None:intergenic 25.0%
! CATAATAATCTCTGATTGAA+TGG + chr5_3:52276245-52276264 None:intergenic 25.0%
! TCAATCAGAGATTATTATGA+AGG - chr5_3:52276246-52276265 Msa0817280:intron 25.0%
! TGTGTTAAAATATCATACAC+TGG + chr5_3:52276496-52276515 None:intergenic 25.0%
!! TGTTTTCTTTGATTAGAATG+TGG - chr5_3:52276524-52276543 Msa0817280:intron 25.0%
!!! CATTTTCTTATTAGCTTTTG+AGG + chr5_3:52276671-52276690 None:intergenic 25.0%
! TTTCATAAGGTAATTTCTGA+GGG + chr5_3:52276767-52276786 None:intergenic 25.0%
!! TTTTCATAAGGTAATTTCTG+AGG + chr5_3:52276768-52276787 None:intergenic 25.0%
!!! GTTTTTACCGGATATTTTTA+TGG - chr5_3:52276868-52276887 Msa0817280:CDS 25.0%
!! CATATTTTTCATCCTTATGT+TGG - chr5_3:52276966-52276985 Msa0817280:CDS 25.0%
! TTGTTCATCTTGAAATATGT+AGG - chr5_3:52277022-52277041 Msa0817280:intron 25.0%
! TCTCATGTTGAAAACAAATT+GGG - chr5_3:52277196-52277215 Msa0817280:intron 25.0%
TGATTGATATGATCAGAAGA+AGG + chr5_3:52273308-52273327 None:intergenic 30.0%
CTTTCTCATCCATGTATATA+TGG - chr5_3:52273329-52273348 Msa0817280:three_prime_UTR 30.0%
AGAAAAAGAGAAAAGAGAGA+AGG + chr5_3:52273366-52273385 None:intergenic 30.0%
GTTGGAGTAAAATTGTGTAA+AGG + chr5_3:52273449-52273468 None:intergenic 30.0%
! GTAATTTTTCTTAAGTGGGT+TGG + chr5_3:52273467-52273486 None:intergenic 30.0%
!!! CTAGACAATCATACCTTTTT+TGG + chr5_3:52273618-52273637 None:intergenic 30.0%
TTTGATGTTTGTGTTTGTGA+CGG + chr5_3:52273663-52273682 None:intergenic 30.0%
ACAAACACAAACATCAAACA+TGG - chr5_3:52273665-52273684 Msa0817280:CDS 30.0%
! TTAGTAAGCTTTTCAAAGGT+GGG - chr5_3:52273914-52273933 Msa0817280:CDS 30.0%
!! TTCTTGTTTGTTATGAATGG+AGG - chr5_3:52274070-52274089 Msa0817280:intron 30.0%
TGTTGGAACTTATTGAATGT+TGG + chr5_3:52274180-52274199 None:intergenic 30.0%
CTAAAAAATCACACACATGT+TGG + chr5_3:52274197-52274216 None:intergenic 30.0%
!!! GTGATTTTTTAGAAACATGG+TGG - chr5_3:52274205-52274224 Msa0817280:CDS 30.0%
TTCATCTTGATGAGATCAAT+AGG + chr5_3:52274477-52274496 None:intergenic 30.0%
GGAGAAAATGATGAAGATTA+TGG - chr5_3:52274881-52274900 Msa0817280:CDS 30.0%
CTGTATTCATTGGGATAAAA+TGG + chr5_3:52274962-52274981 None:intergenic 30.0%
! CATTTTATCCCAATGAATAC+AGG - chr5_3:52274960-52274979 Msa0817280:intron 30.0%
AGATTTCACCTGTATTCATT+GGG + chr5_3:52274971-52274990 None:intergenic 30.0%
AAGATTTCACCTGTATTCAT+TGG + chr5_3:52274972-52274991 None:intergenic 30.0%
GATCTCAAAATCTCATAAAG+AGG + chr5_3:52275206-52275225 None:intergenic 30.0%
GGAAGATTAATCTTACAAAC+TGG + chr5_3:52275365-52275384 None:intergenic 30.0%
AGAATAACTTGAGTAAGCAA+AGG + chr5_3:52275386-52275405 None:intergenic 30.0%
!! TTCAAAAGTCCAGCTTTATT+CGG + chr5_3:52275502-52275521 None:intergenic 30.0%
AATTATCAATGAGAGGGAAA+TGG + chr5_3:52275539-52275558 None:intergenic 30.0%
!!! TAAGTTGTTTTTCGCAAACA+GGG + chr5_3:52275638-52275657 None:intergenic 30.0%
!!! TTAAGTTGTTTTTCGCAAAC+AGG + chr5_3:52275639-52275658 None:intergenic 30.0%
TTGTATAAACTCTACCAAAC+AGG - chr5_3:52275799-52275818 Msa0817280:intron 30.0%
TCAAAAAAGCTAGTCAAAAC+AGG - chr5_3:52275847-52275866 Msa0817280:intron 30.0%
! ATGAGATGGACAATACTTTT+GGG + chr5_3:52275963-52275982 None:intergenic 30.0%
GTATTGTCATATTCATGAGA+TGG + chr5_3:52275977-52275996 None:intergenic 30.0%
!! TACTCTATATTGTTTCTGTC+AGG - chr5_3:52276413-52276432 Msa0817280:intron 30.0%
!! ACTCTATATTGTTTCTGTCA+GGG - chr5_3:52276414-52276433 Msa0817280:intron 30.0%
!! TGTTGTTTCAGATTCATAGA+AGG - chr5_3:52276603-52276622 Msa0817280:intron 30.0%
ACAGCAATTCTTGTTCTATA+TGG - chr5_3:52276698-52276717 Msa0817280:intron 30.0%
TTCATAAGGTAATTTCTGAG+GGG + chr5_3:52276766-52276785 None:intergenic 30.0%
TTTAGTGCTTGAAATAGAAC+AGG - chr5_3:52276828-52276847 Msa0817280:intron 30.0%
GTCTCATGTTGAAAACAAAT+TGG - chr5_3:52277195-52277214 Msa0817280:intron 30.0%
ACATGTGTTCTTATTACACA+GGG + chr5_3:52277354-52277373 None:intergenic 30.0%
AACATGTGTTCTTATTACAC+AGG + chr5_3:52277355-52277374 None:intergenic 30.0%
ATTGTTCTACAAGTGACTAT+TGG - chr5_3:52277414-52277433 Msa0817280:intron 30.0%
!!! TTGGTCTTTTTTATCCAACT+TGG - chr5_3:52277433-52277452 Msa0817280:intron 30.0%
GGTGTTTCATGTAAGTAACA+TGG + chr5_3:52273642-52273661 None:intergenic 35.0%
GTTTGTGATCACTATTCAAG+AGG - chr5_3:52273796-52273815 Msa0817280:CDS 35.0%
!! ATGAAAATTTGGTGGTGATC+AGG - chr5_3:52273841-52273860 Msa0817280:intron 35.0%
!! TGAAAATTTGGTGGTGATCA+GGG - chr5_3:52273842-52273861 Msa0817280:intron 35.0%
! GAAAGTCTGGTTTCATGAAA+TGG - chr5_3:52273890-52273909 Msa0817280:intron 35.0%
! TGGCTTAGTAAGCTTTTCAA+AGG - chr5_3:52273910-52273929 Msa0817280:intron 35.0%
! CTTAGTAAGCTTTTCAAAGG+TGG - chr5_3:52273913-52273932 Msa0817280:intron 35.0%
!! TTGTTTACCAAAGCTCTAGA+TGG + chr5_3:52274006-52274025 None:intergenic 35.0%
GAAACATATGTGCAACTAAG+GGG + chr5_3:52274158-52274177 None:intergenic 35.0%
GGAAACATATGTGCAACTAA+GGG + chr5_3:52274159-52274178 None:intergenic 35.0%
TGGAAACATATGTGCAACTA+AGG + chr5_3:52274160-52274179 None:intergenic 35.0%
TATGTTAACGCATTCTCTAG+TGG - chr5_3:52274325-52274344 Msa0817280:intron 35.0%
GAAGATATGAAGAGACCAAA+TGG - chr5_3:52274740-52274759 Msa0817280:intron 35.0%
ATATGAAGAGACCAAATGGT+TGG - chr5_3:52274744-52274763 Msa0817280:intron 35.0%
!!! AAAAGTGCTTTTTGCTCACT+TGG - chr5_3:52274783-52274802 Msa0817280:intron 35.0%
TTATTTGCATTAGCCCATCA+AGG - chr5_3:52274845-52274864 Msa0817280:CDS 35.0%
!! TAATTGGTAATGTGTGTGTG+TGG - chr5_3:52275036-52275055 Msa0817280:intron 35.0%
CATTGAACAGAAGACTATGT+GGG - chr5_3:52275059-52275078 Msa0817280:intron 35.0%
ATTGAACAGAAGACTATGTG+GGG - chr5_3:52275060-52275079 Msa0817280:intron 35.0%
TGCAATCAGGAGATAATCTA+TGG - chr5_3:52275085-52275104 Msa0817280:intron 35.0%
! TGATCCAAGTTTTCTTTGTC+AGG - chr5_3:52275276-52275295 Msa0817280:intron 35.0%
! GATCCAAGTTTTCTTTGTCA+GGG - chr5_3:52275277-52275296 Msa0817280:intron 35.0%
! GGAAGCAAACTTCACATTTT+GGG + chr5_3:52275344-52275363 None:intergenic 35.0%
! TGGAAGCAAACTTCACATTT+TGG + chr5_3:52275345-52275364 None:intergenic 35.0%
ACATGTGTCTATGCTATAAG+TGG + chr5_3:52275666-52275685 None:intergenic 35.0%
ATCAAACCAGCAGCATTTAT+AGG + chr5_3:52275914-52275933 None:intergenic 35.0%
!!! AATACTTTTGGGACCAAAAG+GGG + chr5_3:52275952-52275971 None:intergenic 35.0%
!!! CAATACTTTTGGGACCAAAA+GGG + chr5_3:52275953-52275972 None:intergenic 35.0%
!!! ACAATACTTTTGGGACCAAA+AGG + chr5_3:52275954-52275973 None:intergenic 35.0%
! CATGAGATGGACAATACTTT+TGG + chr5_3:52275964-52275983 None:intergenic 35.0%
CTGTAGTTGTGAAAGATTAG+AGG - chr5_3:52276006-52276025 Msa0817280:intron 35.0%
CTATAGTATTTCGTATTCCG+AGG + chr5_3:52276144-52276163 None:intergenic 35.0%
TACGAAATACTATAGACTCG+AGG - chr5_3:52276149-52276168 Msa0817280:CDS 35.0%
AAATACTATAGACTCGAGGA+CGG - chr5_3:52276153-52276172 Msa0817280:CDS 35.0%
!! GAATCTGCTATAATGGATAC+TGG - chr5_3:52276201-52276220 Msa0817280:intron 35.0%
TCTCTGATTGAATGGTATAG+AGG + chr5_3:52276237-52276256 None:intergenic 35.0%
! TCTCTTTCAACAAGAAGCAT+GGG + chr5_3:52276300-52276319 None:intergenic 35.0%
TTCTCTTTCAACAAGAAGCA+TGG + chr5_3:52276301-52276320 None:intergenic 35.0%
GCACTTAATGATGCTATTGT+TGG - chr5_3:52276321-52276340 Msa0817280:intron 35.0%
AACAAGAGGTTTATGCCTTT+CGG - chr5_3:52276455-52276474 Msa0817280:intron 35.0%
ATTCATAGAAGGCCAAGAAT+TGG - chr5_3:52276614-52276633 Msa0817280:intron 35.0%
TTCTCATGCCTATAAGTCTA+TGG + chr5_3:52276643-52276662 None:intergenic 35.0%
TTGTTCTATATGGTCTACCA+AGG - chr5_3:52276708-52276727 Msa0817280:intron 35.0%
CTGCATGCCATAAAAATATC+CGG + chr5_3:52276878-52276897 None:intergenic 35.0%
GAAGTTGGAATACCAACATA+AGG + chr5_3:52276981-52277000 None:intergenic 35.0%
AGTCATGTATGCTTAGAAGT+TGG + chr5_3:52276996-52277015 None:intergenic 35.0%
AATGATTCTTCTCCAGCTTA+TGG - chr5_3:52277244-52277263 Msa0817280:intron 35.0%
GAACACATGTTCTCTAAGTA+TGG - chr5_3:52277364-52277383 Msa0817280:intron 35.0%
ATCAGAAGAAGGAGCCATAA+GGG + chr5_3:52273297-52273316 None:intergenic 40.0%
! AACCCAATTGAAGGCATGTT+CGG + chr5_3:52273779-52273798 None:intergenic 40.0%
GTGATCACAAACCCAATTGA+AGG + chr5_3:52273788-52273807 None:intergenic 40.0%
!! GAAAATTTGGTGGTGATCAG+GGG - chr5_3:52273843-52273862 Msa0817280:intron 40.0%
TGAAACCAGACTTTCTCTCT+GGG + chr5_3:52273885-52273904 None:intergenic 40.0%
ATGAAACCAGACTTTCTCTC+TGG + chr5_3:52273886-52273905 None:intergenic 40.0%
TCATCATTATGATCCTGCAG+AGG - chr5_3:52273960-52273979 Msa0817280:intron 40.0%
TTCCATTCCCTTGACTAAGA+TGG - chr5_3:52274547-52274566 Msa0817280:CDS 40.0%
TTCCATCTTAGTCAAGGGAA+TGG + chr5_3:52274552-52274571 None:intergenic 40.0%
TCCTCTTCCATCTTAGTCAA+GGG + chr5_3:52274557-52274576 None:intergenic 40.0%
TTCCTCTTCCATCTTAGTCA+AGG + chr5_3:52274558-52274577 None:intergenic 40.0%
CAGAAGGAGAAAGAGGATTT+AGG - chr5_3:52274692-52274711 Msa0817280:CDS 40.0%
CTGAAGAAAGTGACATTGCA+TGG + chr5_3:52274718-52274737 None:intergenic 40.0%
CATTAGCCCATCAAGGATAT+AGG - chr5_3:52274852-52274871 Msa0817280:CDS 40.0%
! TAAAATGGTGCAGGAGCATA+AGG + chr5_3:52274947-52274966 None:intergenic 40.0%
TCATTGGGATAAAATGGTGC+AGG + chr5_3:52274956-52274975 None:intergenic 40.0%
GCATTGAACAGAAGACTATG+TGG - chr5_3:52275058-52275077 Msa0817280:intron 40.0%
TTGAACAGAAGACTATGTGG+GGG - chr5_3:52275061-52275080 Msa0817280:intron 40.0%
TGGAAATTGTTTAGGCTGCA+TGG - chr5_3:52275105-52275124 Msa0817280:intron 40.0%
TAATGGGAGAATGACAAGAG+TGG + chr5_3:52275162-52275181 None:intergenic 40.0%
CTTCCCTGACAAAGAAAACT+TGG + chr5_3:52275283-52275302 None:intergenic 40.0%
TCGGAGACTAGAATGCTAAT+TGG + chr5_3:52275483-52275502 None:intergenic 40.0%
TTCTAGTCTCCGAATAAAGC+TGG - chr5_3:52275490-52275509 Msa0817280:intron 40.0%
GTCAACTCCTGTCTATCAAT+TGG - chr5_3:52275591-52275610 Msa0817280:intron 40.0%
TGTTAGGCCAATTGATAGAC+AGG + chr5_3:52275601-52275620 None:intergenic 40.0%
GGCCTAACATCTTCACATTT+AGG - chr5_3:52275612-52275631 Msa0817280:intron 40.0%
GGCCTAAATGTGAAGATGTT+AGG + chr5_3:52275617-52275636 None:intergenic 40.0%
ATAGACACATGTTGCACAAG+TGG - chr5_3:52275674-52275693 Msa0817280:intron 40.0%
! TAAGCACTTTTGAGCCTGTT+TGG + chr5_3:52275816-52275835 None:intergenic 40.0%
CAGATTCCTATAAATGCTGC+TGG - chr5_3:52275905-52275924 Msa0817280:CDS 40.0%
TTATCTTCCTCTTGAAGCCT+CGG - chr5_3:52276124-52276143 Msa0817280:CDS 40.0%
AATACTATAGACTCGAGGAC+GGG - chr5_3:52276154-52276173 Msa0817280:CDS 40.0%
GTGCATGGAATCTGCTATAA+TGG - chr5_3:52276194-52276213 Msa0817280:intron 40.0%
!! AACCTCTTGTTTCTGGCAAA+TGG + chr5_3:52276446-52276465 None:intergenic 40.0%
! AGGCATAAACCTCTTGTTTC+TGG + chr5_3:52276453-52276472 None:intergenic 40.0%
ATTGGAGGCCATAGACTTAT+AGG - chr5_3:52276632-52276651 Msa0817280:intron 40.0%
ATGGTCTACCAAGGTAACTA+TGG - chr5_3:52276717-52276736 Msa0817280:intron 40.0%
AACTATGGACAGTGGAAACT+TGG - chr5_3:52276732-52276751 Msa0817280:intron 40.0%
!! CGGATATTTTTATGGCATGC+AGG - chr5_3:52276876-52276895 Msa0817280:CDS 40.0%
GTCAGGTTCTGTCATATATG+TGG - chr5_3:52277083-52277102 Msa0817280:intron 40.0%
!! ATGCAATGAGAGTTTGTTGC+TGG + chr5_3:52277127-52277146 None:intergenic 40.0%
AGCAACAAACTCTCATTGCA+TGG - chr5_3:52277126-52277145 Msa0817280:intron 40.0%
AGACTTTGCACCTTTCTTTG+AGG + chr5_3:52277179-52277198 None:intergenic 40.0%
CTCGAACATATTCGTTTGAC+TGG - chr5_3:52277322-52277341 Msa0817280:intron 40.0%
TTATCCAACTTGGTCTCTTG+TGG - chr5_3:52277443-52277462 Msa0817280:intron 40.0%
! GTGGATTGCTTCAAAACTCA+AGG - chr5_3:52277462-52277481 Msa0817280:intron 40.0%
AGGCTCGAACAACTTCTATA+TGG - chr5_3:52277492-52277511 Msa0817280:intron 40.0%
AACTTCTATATGGTCCTGTG+AGG - chr5_3:52277502-52277521 Msa0817280:intron 40.0%
GATCAGAAGAAGGAGCCATA+AGG + chr5_3:52273298-52273317 None:intergenic 45.0%
ACACCGAACATGCCTTCAAT+TGG - chr5_3:52273773-52273792 Msa0817280:CDS 45.0%
CACCGAACATGCCTTCAATT+GGG - chr5_3:52273774-52273793 Msa0817280:CDS 45.0%
TTCAAAGGTGGGTCCAATAG+AGG - chr5_3:52273925-52273944 Msa0817280:CDS 45.0%
CATTATGATCCTGCAGAGGA+AGG - chr5_3:52273964-52273983 Msa0817280:intron 45.0%
ACATATGTGCAACTAAGGGG+AGG + chr5_3:52274155-52274174 None:intergenic 45.0%
GATTTGTAAGAGGATCACCG+TGG + chr5_3:52274292-52274311 None:intergenic 45.0%
TCCCTTGACTAAGATGGAAG+AGG - chr5_3:52274553-52274572 Msa0817280:CDS 45.0%
TAGAGCTCAGAAGGAGAAAG+AGG - chr5_3:52274685-52274704 Msa0817280:CDS 45.0%
TAGCCCATCAAGGATATAGG+TGG - chr5_3:52274855-52274874 Msa0817280:CDS 45.0%
AGCCCATCAAGGATATAGGT+GGG - chr5_3:52274856-52274875 Msa0817280:CDS 45.0%
! AGTATAGATGCCACCCCTTT+TGG - chr5_3:52275936-52275955 Msa0817280:CDS 45.0%
AAGCTTGTGCTTAGAGTGCA+TGG - chr5_3:52276179-52276198 Msa0817280:intron 45.0%
CACCATTTGCCAGAAACAAG+AGG - chr5_3:52276441-52276460 Msa0817280:intron 45.0%
! TCACAGTTTGCTCTTCCGAA+AGG + chr5_3:52276473-52276492 None:intergenic 45.0%
CATAGAAGGCCAAGAATTGG+AGG - chr5_3:52276617-52276636 Msa0817280:intron 45.0%
AGTCTATGGCCTCCAATTCT+TGG + chr5_3:52276629-52276648 None:intergenic 45.0%
ACCAAGGTAACTATGGACAG+TGG - chr5_3:52276724-52276743 Msa0817280:intron 45.0%
TCCACTGTCCATAGTTACCT+TGG + chr5_3:52276728-52276747 None:intergenic 45.0%
ATGGCATGCAGGTTACTAAC+AGG - chr5_3:52276887-52276906 Msa0817280:CDS 45.0%
CCATGCATGCATCAACTCAT+GGG + chr5_3:52276924-52276943 None:intergenic 45.0%
ACCATGCATGCATCAACTCA+TGG + chr5_3:52276925-52276944 None:intergenic 45.0%
CATGCATGGTTACGCCTTAA+AGG - chr5_3:52276935-52276954 Msa0817280:CDS 45.0%
CAATCTCAGTCCTGAAGTAG+AGG - chr5_3:52277051-52277070 Msa0817280:intron 45.0%
CATATGCCTTCCTCTACTTC+AGG + chr5_3:52277064-52277083 None:intergenic 45.0%
! AGTAGAGGAAGGCATATGTC+AGG - chr5_3:52277066-52277085 Msa0817280:intron 45.0%
GCTGCTTCTTCCTCAAAGAA+AGG - chr5_3:52277166-52277185 Msa0817280:intron 45.0%
GATTCTTCTCCAGCTTATGG+TGG - chr5_3:52277247-52277266 Msa0817280:intron 45.0%
CTAAAACCACCACCATAAGC+TGG + chr5_3:52277259-52277278 None:intergenic 45.0%
CAATCCACAAGAGACCAAGT+TGG + chr5_3:52277450-52277469 None:intergenic 45.0%
TCAAAACTCAAGGCAGAGAG+AGG - chr5_3:52277472-52277491 Msa0817280:intron 45.0%
TTGTACTCTGACATCCTCAC+AGG + chr5_3:52277519-52277538 None:intergenic 45.0%
AGAGTGAGGGAAGAAGGAAG+AGG + chr5_3:52273274-52273293 None:intergenic 50.0%
TAAGGGAGAGTGAGGGAAGA+AGG + chr5_3:52273280-52273299 None:intergenic 50.0%
TCTTCCCTCACTCTCCCTTA+TGG - chr5_3:52273280-52273299 Msa0817280:three_prime_UTR 50.0%
TCACACCCAGAGAGAAAGTC+TGG - chr5_3:52273877-52273896 Msa0817280:intron 50.0%
AAGGTGGGTCCAATAGAGGA+AGG - chr5_3:52273929-52273948 Msa0817280:CDS 50.0%
ACGACCACTCCTTCCTCTAT+TGG + chr5_3:52273941-52273960 None:intergenic 50.0%
TGTCGTGAACATTAGCGCAG+TGG + chr5_3:52274392-52274411 None:intergenic 50.0%
TGATCGTGCTAGAGCTCAGA+AGG - chr5_3:52274676-52274695 Msa0817280:CDS 50.0%
GCCCATCAAGGATATAGGTG+GGG - chr5_3:52274857-52274876 Msa0817280:CDS 50.0%
CCCCCACCTATATCCTTGAT+GGG + chr5_3:52274861-52274880 None:intergenic 50.0%
CCCATCAAGGATATAGGTGG+GGG - chr5_3:52274858-52274877 Msa0817280:CDS 50.0%
CCATCAAGGATATAGGTGGG+GGG - chr5_3:52274859-52274878 Msa0817280:CDS 50.0%
CATCAAGGATATAGGTGGGG+GGG - chr5_3:52274860-52274879 Msa0817280:CDS 50.0%
! ATGGTGCAGGAGCATAAGGA+GGG + chr5_3:52274943-52274962 None:intergenic 50.0%
! AATGGTGCAGGAGCATAAGG+AGG + chr5_3:52274944-52274963 None:intergenic 50.0%
!!! ACTTTTGGGACCAAAAGGGG+TGG + chr5_3:52275949-52275968 None:intergenic 50.0%
TCGTATTCCGAGGCTTCAAG+AGG + chr5_3:52276134-52276153 None:intergenic 50.0%
!! CCCATGAGTTGATGCATGCA+TGG - chr5_3:52276921-52276940 Msa0817280:CDS 50.0%
CTCAGTCCTGAAGTAGAGGA+AGG - chr5_3:52277055-52277074 Msa0817280:intron 50.0%
TCTTCTCCAGCTTATGGTGG+TGG - chr5_3:52277250-52277269 Msa0817280:intron 50.0%
GGAGCCATAAGGGAGAGTGA+GGG + chr5_3:52273287-52273306 None:intergenic 55.0%
AGGAGCCATAAGGGAGAGTG+AGG + chr5_3:52273288-52273307 None:intergenic 55.0%
GGGTCCAATAGAGGAAGGAG+TGG - chr5_3:52273934-52273953 Msa0817280:CDS 55.0%
CAAGACATGCCTTCCTCTGC+AGG + chr5_3:52273976-52273995 None:intergenic 55.0%
! CTGCAGAGGAAGGCATGTCT+TGG - chr5_3:52273974-52273993 Msa0817280:intron 55.0%
! GCGTGCTCCATCTAGAGCTT+TGG - chr5_3:52273996-52274015 Msa0817280:intron 55.0%
CCCCCCACCTATATCCTTGA+TGG + chr5_3:52274862-52274881 None:intergenic 55.0%
ACTATGTGGGGGCTGCAATC+AGG - chr5_3:52275072-52275091 Msa0817280:intron 55.0%
! GAGTGGCATCGAAAGCAGTC+TGG + chr5_3:52275145-52275164 None:intergenic 55.0%
ACTACCTCGCGCTCGGTAAT+GGG + chr5_3:52275178-52275197 None:intergenic 55.0%
AACTACCTCGCGCTCGGTAA+TGG + chr5_3:52275179-52275198 None:intergenic 55.0%
GGATCAAACTACCTCGCGCT+CGG + chr5_3:52275185-52275204 None:intergenic 55.0%
TGAGGAAGAAGCAGCAGCTG+TGG + chr5_3:52277161-52277180 None:intergenic 55.0%
TTCTCCCATTACCGAGCGCG+AGG - chr5_3:52275171-52275190 Msa0817280:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 52273231 52277639 52273231 ID=Msa0817280;Name=Msa0817280
chr5_3 mRNA 52273231 52277639 52273231 ID=Msa0817280-mRNA-1;Parent=Msa0817280;Name=Msa0817280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|0.90|0.83|1|0.81|0.83|12|279|491
chr5_3 exon 52273231 52273826 52273231 ID=Msa0817280-mRNA-1:exon:15722;Parent=Msa0817280-mRNA-1
chr5_3 exon 52273914 52273972 52273914 ID=Msa0817280-mRNA-1:exon:15721;Parent=Msa0817280-mRNA-1
chr5_3 exon 52274141 52274256 52274141 ID=Msa0817280-mRNA-1:exon:15720;Parent=Msa0817280-mRNA-1
chr5_3 exon 52274373 52274435 52274373 ID=Msa0817280-mRNA-1:exon:15719;Parent=Msa0817280-mRNA-1
chr5_3 exon 52274517 52274729 52274517 ID=Msa0817280-mRNA-1:exon:15718;Parent=Msa0817280-mRNA-1
chr5_3 exon 52274843 52274927 52274843 ID=Msa0817280-mRNA-1:exon:15717;Parent=Msa0817280-mRNA-1
chr5_3 exon 52275506 52275585 52275506 ID=Msa0817280-mRNA-1:exon:15716;Parent=Msa0817280-mRNA-1
chr5_3 exon 52275678 52275801 52275678 ID=Msa0817280-mRNA-1:exon:15715;Parent=Msa0817280-mRNA-1
chr5_3 exon 52275889 52276012 52275889 ID=Msa0817280-mRNA-1:exon:15714;Parent=Msa0817280-mRNA-1
chr5_3 exon 52276109 52276196 52276109 ID=Msa0817280-mRNA-1:exon:15713;Parent=Msa0817280-mRNA-1
chr5_3 exon 52276853 52277007 52276853 ID=Msa0817280-mRNA-1:exon:15712;Parent=Msa0817280-mRNA-1
chr5_3 exon 52277520 52277639 52277520 ID=Msa0817280-mRNA-1:exon:15711;Parent=Msa0817280-mRNA-1
chr5_3 five_prime_UTR 52277572 52277639 52277572 ID=Msa0817280-mRNA-1:five_prime_utr;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52277520 52277571 52277520 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52276853 52277007 52276853 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52276109 52276196 52276109 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52275889 52276012 52275889 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52275678 52275801 52275678 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52275506 52275585 52275506 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52274843 52274927 52274843 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52274517 52274729 52274517 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52274373 52274435 52274373 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52274141 52274256 52274141 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52273914 52273972 52273914 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 CDS 52273510 52273826 52273510 ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1
chr5_3 three_prime_UTR 52273231 52273509 52273231 ID=Msa0817280-mRNA-1:three_prime_utr;Parent=Msa0817280-mRNA-1
Gene Sequence

>Msa0817280

ATGGCTCCTTCTTCTGATCATATCAATCATCTTTCTCATCCATGTATATATGGGGATTATGTGTCTTCACACCCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGTGGGTCCAATAGAGGAAGGAGTGGTCGTCATCATTATGATCCTGCAGAGGAAGGCATGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATTTAGGCCATGCAATGTCACTTTCTTCAGCAGAAGATATGAAGAGACCAAATGCCCATCAAGGATATAGGTGGGGGGGAGAAAATGATGAAGATTATGGAAAGGCACTTCATGATAACTTTAACTCATCTGCACACCCTCCTTATGCTCCTGCACCATTTTATCCCAATGAATACAGAAGACTATGTGGGGGCTGCAATCAGGAGATAATCTATGGAAATTGTTTAGGCTGCATGGATACTTATTTTCATCCAGACTGCTTTCGATGCCACTCTTGTCATTCTCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATCTTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGACAATACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGCCTCGGAATACGAAATACTATAGACTCGAGGACGGGCGAAGCTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGACTGTCAGCCTCTATACCATTCAATCAGAGATTATTATGAAGGAATGCATATGAAAATTGATCAGCAAGTTCCCATGCTTCTTGTTGAAAGAGAAGCACTTAATGATGCTATTGTTGGAGAGAAGACTGGATTTCACCATTTGCCAGAAACAAGAGGTTTATGCCTTTCGGAAGAGCAAACTGTGACCAGTATTCATAGAAGGCCAAGAATTGGAGGCCATAGACTTATAGGCATGAGAACTCAACCTCAAAAGCTAATAAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTACCAAGGTTACTAACAGGTGCTATACTTGCCCATGAGTTGATGCATGCATGGTTACGCCTTAAAGGTTATCGCAATCTCAGTCCTGAAGTAGAGGAAGGCATATGTCAGGTTCTGTCATATATGTGGCTTGAGTCAGAAGTTATGCCAGCAACAAACTCTCATTGCATGGCATCAACATCCACAGCTGCTGCTTCTTCCTCAAAGAAAGGTGCAAAGTCTCATGTTGAAAACAAATTGGGTGAATTCTTCAAGAATCAAATTGTCAATGATTCTTCTCCAGCTTATGGTGGTGGTTTTAGAGCTGCAAATGAAGCTGTTAATAAATATGGTCTACGTAGTACTCTCGAACATATTCGTTTGACTGGTTTTATCCCTGTGTAA

Protein sequence

>Msa0817280

MAPSSDHINHLSHPCIYGDYVSSHPERKSGFMKWLSKLFKGGSNRGRSGRHHYDPAEEGMSWRAPSRALDDRARAQKEKEDLGHAMSLSSAEDMKRPNAHQGYRWGGENDEDYGKALHDNFNSSAHPPYAPAPFYPNEYRRLCGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCHSPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQCHPFWSQKYCPSHEYDNTARCCSCERLEPRNTKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMKIDQQVPMLLVEREALNDAIVGEKTGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLSPEVEEGICQVLSYMWLESEVMPATNSHCMASTSTAAASSSKKGAKSHVENKLGEFFKNQIVNDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGFIPV*