Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817280 | sp|Q0WSN2|DAR2_ARATH | 64.648 | 512 | 149 | 9 | 8 | 491 | 21 | 528 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817280 | A0A396HX06 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0817280 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737810 | Msa0817280 | 0.995603 | 6.011506e-218 | -8.615850e-47 |
| Msa0785440 | Msa0817280 | 0.818580 | 1.819846e-52 | -8.615850e-47 |
| Msa0817250 | Msa0817280 | 0.914387 | 2.034682e-84 | -8.615850e-47 |
| Msa0817280 | Msa0857540 | 0.800365 | 1.491583e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817280 | MtrunA17_Chr5g0436051 | 95.833 | 504 | 8 | 1 | 1 | 491 | 113 | 616 | 0.0 | 1013 |
| Msa0817280 | MtrunA17_Chr3g0112601 | 70.986 | 517 | 120 | 6 | 1 | 491 | 1 | 513 | 0.0 | 739 |
| Msa0817280 | MtrunA17_Chr1g0154501 | 50.731 | 479 | 205 | 8 | 32 | 490 | 1 | 468 | 3.53e-166 | 478 |
| Msa0817280 | MtrunA17_Chr8g0373781 | 49.813 | 536 | 187 | 10 | 32 | 490 | 1 | 531 | 7.26e-165 | 476 |
| Msa0817280 | MtrunA17_Chr5g0403301 | 56.357 | 291 | 99 | 3 | 207 | 490 | 37 | 306 | 3.80e-109 | 326 |
| Msa0817280 | MtrunA17_Chr5g0403261 | 37.228 | 368 | 137 | 8 | 32 | 307 | 1 | 366 | 2.95e-74 | 238 |
| Msa0817280 | MtrunA17_Chr5g0403271 | 64.706 | 153 | 49 | 1 | 343 | 490 | 1 | 153 | 1.58e-59 | 192 |
| Msa0817280 | MtrunA17_Chr5g0403291 | 57.576 | 66 | 28 | 0 | 141 | 206 | 382 | 447 | 1.48e-20 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817280 | AT2G39830.1 | 64.648 | 512 | 149 | 9 | 8 | 491 | 21 | 528 | 0.0 | 639 |
| Msa0817280 | AT2G39830.2 | 64.272 | 515 | 149 | 10 | 8 | 491 | 21 | 531 | 0.0 | 634 |
| Msa0817280 | AT2G39830.3 | 64.244 | 509 | 147 | 9 | 8 | 491 | 21 | 519 | 0.0 | 630 |
| Msa0817280 | AT2G39830.4 | 62.175 | 423 | 132 | 8 | 8 | 406 | 21 | 439 | 5.94e-179 | 509 |
| Msa0817280 | AT4G36860.1 | 59.145 | 421 | 144 | 5 | 92 | 490 | 139 | 553 | 2.30e-168 | 486 |
| Msa0817280 | AT4G36860.3 | 59.145 | 421 | 144 | 5 | 92 | 490 | 163 | 577 | 2.79e-168 | 487 |
| Msa0817280 | AT1G19270.1 | 46.154 | 533 | 213 | 7 | 32 | 491 | 1 | 532 | 1.00e-160 | 466 |
| Msa0817280 | AT1G19270.2 | 46.154 | 533 | 213 | 7 | 32 | 491 | 1 | 532 | 1.00e-160 | 466 |
| Msa0817280 | AT4G36860.2 | 58.075 | 322 | 109 | 4 | 92 | 393 | 139 | 454 | 6.40e-127 | 377 |
| Msa0817280 | AT5G66610.3 | 50.847 | 354 | 161 | 5 | 142 | 484 | 73 | 424 | 4.82e-115 | 346 |
| Msa0817280 | AT5G66620.1 | 49.722 | 360 | 159 | 5 | 142 | 483 | 285 | 640 | 8.95e-115 | 352 |
| Msa0817280 | AT5G66620.3 | 42.418 | 455 | 231 | 7 | 56 | 483 | 181 | 631 | 2.26e-114 | 351 |
| Msa0817280 | AT5G66620.4 | 42.418 | 455 | 231 | 7 | 56 | 483 | 181 | 631 | 2.26e-114 | 351 |
| Msa0817280 | AT5G66610.1 | 50.847 | 354 | 161 | 5 | 142 | 484 | 200 | 551 | 4.05e-114 | 348 |
| Msa0817280 | AT5G66610.2 | 47.244 | 381 | 161 | 6 | 142 | 484 | 200 | 578 | 2.37e-108 | 334 |
| Msa0817280 | AT5G66630.1 | 46.667 | 360 | 167 | 7 | 142 | 483 | 346 | 698 | 1.88e-102 | 322 |
| Msa0817280 | AT5G66640.1 | 45.869 | 351 | 160 | 6 | 161 | 483 | 90 | 438 | 7.75e-94 | 292 |
| Msa0817280 | AT5G66640.7 | 45.869 | 351 | 160 | 6 | 161 | 483 | 90 | 438 | 7.75e-94 | 292 |
| Msa0817280 | AT5G17890.1 | 47.527 | 364 | 166 | 7 | 143 | 483 | 1240 | 1601 | 2.24e-93 | 310 |
| Msa0817280 | AT5G66640.4 | 45.869 | 351 | 160 | 6 | 161 | 483 | 121 | 469 | 3.35e-93 | 291 |
| Msa0817280 | AT5G66640.5 | 45.869 | 351 | 160 | 6 | 161 | 483 | 122 | 470 | 3.56e-93 | 291 |
| Msa0817280 | AT5G66640.3 | 46.769 | 325 | 145 | 5 | 187 | 483 | 7 | 331 | 5.33e-90 | 278 |
| Msa0817280 | AT5G66640.2 | 41.595 | 351 | 171 | 8 | 161 | 483 | 121 | 465 | 9.62e-77 | 249 |
| Msa0817280 | AT5G66640.6 | 41.311 | 351 | 172 | 7 | 161 | 483 | 122 | 466 | 9.67e-77 | 249 |
| Msa0817280 | AT5G66620.2 | 45.291 | 223 | 107 | 4 | 142 | 353 | 276 | 494 | 1.71e-62 | 212 |
Find 127 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGCAAACTTCACATTT+TGG | 0.182828 | 5_3:+52275506 | None:intergenic |
| AGGCATAAACCTCTTGTTTC+TGG | 0.186251 | 5_3:+52274398 | None:intergenic |
| AATATGTGTATATACCTTTA+AGG | 0.205624 | 5_3:+52273899 | None:intergenic |
| GTCTCATGTTGAAAACAAAT+TGG | 0.214527 | 5_3:-52273653 | Msa0817280:CDS |
| TTAAAACAAGATTTGTGATA+TGG | 0.216060 | 5_3:+52275542 | None:intergenic |
| TCTTCCCTCACTCTCCCTTA+TGG | 0.245389 | 5_3:-52277568 | Msa0817280:exon |
| CTGTATTCATTGGGATAAAA+TGG | 0.256062 | 5_3:+52275889 | None:intergenic |
| AATGAAGCTGTTAATAAATA+TGG | 0.258522 | 5_3:-52273562 | Msa0817280:CDS |
| ACAGCAATTCTTGTTCTATA+TGG | 0.261118 | 5_3:-52274150 | Msa0817280:CDS |
| CATGAGATGGACAATACTTT+TGG | 0.265205 | 5_3:+52274887 | None:intergenic |
| CATGCATGGTTACGCCTTAA+AGG | 0.286050 | 5_3:-52273913 | Msa0817280:intron |
| AGTATAGATGCCACCCCTTT+TGG | 0.293022 | 5_3:-52274912 | Msa0817280:intron |
| GGAGAAAATGATGAAGATTA+TGG | 0.298017 | 5_3:-52275967 | Msa0817280:CDS |
| AATGATTCTTCTCCAGCTTA+TGG | 0.306927 | 5_3:-52273604 | Msa0817280:CDS |
| CTTTCTCATCCATGTATATA+TGG | 0.313577 | 5_3:-52277519 | Msa0817280:intron |
| ATTGGAGGCCATAGACTTAT+AGG | 0.316467 | 5_3:-52274216 | Msa0817280:CDS |
| GAACACATGTTCTCTAAGTA+TGG | 0.327365 | 5_3:-52273484 | Msa0817280:three_prime_UTR |
| AAGATTTCACCTGTATTCAT+TGG | 0.335163 | 5_3:+52275879 | None:intergenic |
| AACTACCTCGCGCTCGGTAA+TGG | 0.338884 | 5_3:+52275672 | None:intergenic |
| GAAAGTCTGGTTTCATGAAA+TGG | 0.348540 | 5_3:-52276958 | Msa0817280:CDS |
| AACAAGAGGTTTATGCCTTT+CGG | 0.351720 | 5_3:-52274393 | Msa0817280:CDS |
| ACGACCACTCCTTCCTCTAT+TGG | 0.353168 | 5_3:+52276910 | None:intergenic |
| GTGCATGGAATCTGCTATAA+TGG | 0.356084 | 5_3:-52274654 | Msa0817280:CDS |
| ACTACCTCGCGCTCGGTAAT+GGG | 0.362527 | 5_3:+52275673 | None:intergenic |
| ATAATCTATGGAAATTGTTT+AGG | 0.366827 | 5_3:-52275751 | Msa0817280:CDS |
| AGTCTATGGCCTCCAATTCT+TGG | 0.369796 | 5_3:+52274222 | None:intergenic |
| CAGAAGGAGAAAGAGGATTT+AGG | 0.374040 | 5_3:-52276156 | Msa0817280:CDS |
| GCACTTAATGATGCTATTGT+TGG | 0.375277 | 5_3:-52274527 | Msa0817280:CDS |
| ATGAAACCAGACTTTCTCTC+TGG | 0.376624 | 5_3:+52276965 | None:intergenic |
| TTCTCATGCCTATAAGTCTA+TGG | 0.380772 | 5_3:+52274208 | None:intergenic |
| AACCTCTTGTTTCTGGCAAA+TGG | 0.381781 | 5_3:+52274405 | None:intergenic |
| AATAATAAGCTAAATACATT+AGG | 0.385158 | 5_3:+52273274 | None:intergenic |
| CATTAGCCCATCAAGGATAT+AGG | 0.386946 | 5_3:-52275996 | Msa0817280:intron |
| ATTGTTCTACAAGTGACTAT+TGG | 0.392656 | 5_3:-52273434 | Msa0817280:three_prime_UTR |
| ATGGCATGCAGGTTACTAAC+AGG | 0.396063 | 5_3:-52273961 | Msa0817280:intron |
| CTCGAACATATTCGTTTGAC+TGG | 0.400738 | 5_3:-52273526 | Msa0817280:CDS |
| CATAATAATCTCTGATTGAA+TGG | 0.404836 | 5_3:+52274606 | None:intergenic |
| CTGTAGTTGTGAAAGATTAG+AGG | 0.408619 | 5_3:-52274842 | Msa0817280:intron |
| TGCAATCAGGAGATAATCTA+TGG | 0.410658 | 5_3:-52275763 | Msa0817280:CDS |
| AGGCTCGAACAACTTCTATA+TGG | 0.413581 | 5_3:-52273356 | Msa0817280:three_prime_UTR |
| TGTTGTTTCAGATTCATAGA+AGG | 0.415721 | 5_3:-52274245 | Msa0817280:intron |
| TTGTTTACCAAAGCTCTAGA+TGG | 0.420805 | 5_3:+52276845 | None:intergenic |
| GAATCTGCTATAATGGATAC+TGG | 0.421279 | 5_3:-52274647 | Msa0817280:CDS |
| ATTCATAGAAGGCCAAGAAT+TGG | 0.426756 | 5_3:-52274234 | Msa0817280:CDS |
| AGATTTCACCTGTATTCATT+GGG | 0.428419 | 5_3:+52275880 | None:intergenic |
| TTATCCAACTTGGTCTCTTG+TGG | 0.433491 | 5_3:-52273405 | Msa0817280:three_prime_UTR |
| CATATGCCTTCCTCTACTTC+AGG | 0.435073 | 5_3:+52273787 | None:intergenic |
| TTCAAAGGTGGGTCCAATAG+AGG | 0.438064 | 5_3:-52276923 | Msa0817280:CDS |
| ATCAGAAGAAGGAGCCATAA+GGG | 0.441052 | 5_3:+52277554 | None:intergenic |
| TCAATCAGAGATTATTATGA+AGG | 0.445893 | 5_3:-52274602 | Msa0817280:CDS |
| CAAGACATGCCTTCCTCTGC+AGG | 0.450171 | 5_3:+52276875 | None:intergenic |
| TCTTCTCCAGCTTATGGTGG+TGG | 0.452845 | 5_3:-52273598 | Msa0817280:CDS |
| TCTCATGTTGAAAACAAATT+GGG | 0.452858 | 5_3:-52273652 | Msa0817280:CDS |
| GCGTGCTCCATCTAGAGCTT+TGG | 0.454192 | 5_3:-52276852 | Msa0817280:intron |
| TAAAATGGTGCAGGAGCATA+AGG | 0.458370 | 5_3:+52275904 | None:intergenic |
| TCACACCCAGAGAGAAAGTC+TGG | 0.460029 | 5_3:-52276971 | Msa0817280:CDS |
| TAAGGGAGAGTGAGGGAAGA+AGG | 0.460899 | 5_3:+52277571 | None:intergenic |
| AGACTTTGCACCTTTCTTTG+AGG | 0.470152 | 5_3:+52273672 | None:intergenic |
| GAGTGGCATCGAAAGCAGTC+TGG | 0.476246 | 5_3:+52275706 | None:intergenic |
| ATGCAATGAGAGTTTGTTGC+TGG | 0.480588 | 5_3:+52273724 | None:intergenic |
| TGGAAATTGTTTAGGCTGCA+TGG | 0.497463 | 5_3:-52275743 | Msa0817280:CDS |
| GATCAGAAGAAGGAGCCATA+AGG | 0.497642 | 5_3:+52277553 | None:intergenic |
| GAAGATATGAAGAGACCAAA+TGG | 0.499622 | 5_3:-52276108 | Msa0817280:intron |
| TTCTCTTTCAACAAGAAGCA+TGG | 0.501914 | 5_3:+52274550 | None:intergenic |
| CTAAAACCACCACCATAAGC+TGG | 0.509878 | 5_3:+52273592 | None:intergenic |
| CTGCAGAGGAAGGCATGTCT+TGG | 0.516391 | 5_3:-52276874 | Msa0817280:CDS |
| TAGAGCTCAGAAGGAGAAAG+AGG | 0.516816 | 5_3:-52276163 | Msa0817280:CDS |
| ACCATGCATGCATCAACTCA+TGG | 0.520688 | 5_3:+52273926 | None:intergenic |
| TGATCGTGCTAGAGCTCAGA+AGG | 0.527771 | 5_3:-52276172 | Msa0817280:CDS |
| TTATTTGCATTAGCCCATCA+AGG | 0.527904 | 5_3:-52276003 | Msa0817280:intron |
| TCTCTGATTGAATGGTATAG+AGG | 0.533543 | 5_3:+52274614 | None:intergenic |
| AGGAGCCATAAGGGAGAGTG+AGG | 0.534142 | 5_3:+52277563 | None:intergenic |
| GTGGATTGCTTCAAAACTCA+AGG | 0.534190 | 5_3:-52273386 | Msa0817280:three_prime_UTR |
| GGATCAAACTACCTCGCGCT+CGG | 0.536169 | 5_3:+52275666 | None:intergenic |
| GCTGCTTCTTCCTCAAAGAA+AGG | 0.536522 | 5_3:-52273682 | Msa0817280:CDS |
| AGAGTGAGGGAAGAAGGAAG+AGG | 0.536709 | 5_3:+52277577 | None:intergenic |
| CATAGAAGGCCAAGAATTGG+AGG | 0.541624 | 5_3:-52274231 | Msa0817280:CDS |
| GTCAGGTTCTGTCATATATG+TGG | 0.544593 | 5_3:-52273765 | Msa0817280:CDS |
| TCTCTTTCAACAAGAAGCAT+GGG | 0.545613 | 5_3:+52274551 | None:intergenic |
| AAGCTTGTGCTTAGAGTGCA+TGG | 0.547235 | 5_3:-52274669 | Msa0817280:CDS |
| CCCATCAAGGATATAGGTGG+GGG | 0.548766 | 5_3:-52275990 | Msa0817280:CDS |
| CACCATTTGCCAGAAACAAG+AGG | 0.548780 | 5_3:-52274407 | Msa0817280:CDS |
| TCATTGGGATAAAATGGTGC+AGG | 0.553987 | 5_3:+52275895 | None:intergenic |
| TGAAACCAGACTTTCTCTCT+GGG | 0.553994 | 5_3:+52276966 | None:intergenic |
| CATTATGATCCTGCAGAGGA+AGG | 0.555932 | 5_3:-52276884 | Msa0817280:CDS |
| AACATGTGTTCTTATTACAC+AGG | 0.561919 | 5_3:+52273496 | None:intergenic |
| GATTCTTCTCCAGCTTATGG+TGG | 0.562395 | 5_3:-52273601 | Msa0817280:CDS |
| AGTAGAGGAAGGCATATGTC+AGG | 0.562990 | 5_3:-52273782 | Msa0817280:CDS |
| CTATAGTATTTCGTATTCCG+AGG | 0.568127 | 5_3:+52274707 | None:intergenic |
| CCATGCATGCATCAACTCAT+GGG | 0.575521 | 5_3:+52273927 | None:intergenic |
| AGCCCATCAAGGATATAGGT+GGG | 0.576893 | 5_3:-52275992 | Msa0817280:CDS |
| CCCATGAGTTGATGCATGCA+TGG | 0.580940 | 5_3:-52273927 | Msa0817280:CDS |
| AGCAACAAACTCTCATTGCA+TGG | 0.581985 | 5_3:-52273722 | Msa0817280:CDS |
| TCACAGTTTGCTCTTCCGAA+AGG | 0.583186 | 5_3:+52274378 | None:intergenic |
| CTGAAGAAAGTGACATTGCA+TGG | 0.583861 | 5_3:+52276133 | None:intergenic |
| AAATGATGAAGATTATGGAA+AGG | 0.584158 | 5_3:-52275962 | Msa0817280:CDS |
| GTATTGTCATATTCATGAGA+TGG | 0.585321 | 5_3:+52274874 | None:intergenic |
| GCCCATCAAGGATATAGGTG+GGG | 0.591148 | 5_3:-52275991 | Msa0817280:CDS |
| CAATCTCAGTCCTGAAGTAG+AGG | 0.592599 | 5_3:-52273797 | Msa0817280:CDS |
| TGAGGAAGAAGCAGCAGCTG+TGG | 0.594186 | 5_3:+52273690 | None:intergenic |
| TAGCCCATCAAGGATATAGG+TGG | 0.597899 | 5_3:-52275993 | Msa0817280:CDS |
| TGATTGATATGATCAGAAGA+AGG | 0.604305 | 5_3:+52277543 | None:intergenic |
| CATCAAGGATATAGGTGGGG+GGG | 0.609524 | 5_3:-52275988 | Msa0817280:CDS |
| CATTGAACAGAAGACTATGT+GGG | 0.609543 | 5_3:-52275789 | Msa0817280:intron |
| TCAAAACTCAAGGCAGAGAG+AGG | 0.611009 | 5_3:-52273376 | Msa0817280:three_prime_UTR |
| AATACTATAGACTCGAGGAC+GGG | 0.611229 | 5_3:-52274694 | Msa0817280:CDS |
| CTCAGTCCTGAAGTAGAGGA+AGG | 0.619865 | 5_3:-52273793 | Msa0817280:CDS |
| TTGTACTCTGACATCCTCAC+AGG | 0.622459 | 5_3:+52273332 | None:intergenic |
| CAATCCACAAGAGACCAAGT+TGG | 0.625624 | 5_3:+52273401 | None:intergenic |
| AATGGTGCAGGAGCATAAGG+AGG | 0.625823 | 5_3:+52275907 | None:intergenic |
| AGTAAAGTACCATATATACA+TGG | 0.626223 | 5_3:+52277510 | None:intergenic |
| TTCTCCCATTACCGAGCGCG+AGG | 0.628667 | 5_3:-52275677 | Msa0817280:intron |
| AAGGTGGGTCCAATAGAGGA+AGG | 0.645391 | 5_3:-52276919 | Msa0817280:CDS |
| GGAGCCATAAGGGAGAGTGA+GGG | 0.648423 | 5_3:+52277564 | None:intergenic |
| ATTGAACAGAAGACTATGTG+GGG | 0.648467 | 5_3:-52275788 | Msa0817280:intron |
| AAATACTATAGACTCGAGGA+CGG | 0.654015 | 5_3:-52274695 | Msa0817280:CDS |
| GCATTGAACAGAAGACTATG+TGG | 0.658253 | 5_3:-52275790 | Msa0817280:intron |
| TTGTTCTATATGGTCTACCA+AGG | 0.659611 | 5_3:-52274140 | Msa0817280:intron |
| AACTTCTATATGGTCCTGTG+AGG | 0.664585 | 5_3:-52273346 | Msa0817280:three_prime_UTR |
| ACATGTGTTCTTATTACACA+GGG | 0.664721 | 5_3:+52273497 | None:intergenic |
| GGGTCCAATAGAGGAAGGAG+TGG | 0.672837 | 5_3:-52276914 | Msa0817280:CDS |
| ATGGTGCAGGAGCATAAGGA+GGG | 0.678829 | 5_3:+52275908 | None:intergenic |
| CCATCAAGGATATAGGTGGG+GGG | 0.680331 | 5_3:-52275989 | Msa0817280:CDS |
| TAATGGGAGAATGACAAGAG+TGG | 0.685159 | 5_3:+52275689 | None:intergenic |
| TACGAAATACTATAGACTCG+AGG | 0.695310 | 5_3:-52274699 | Msa0817280:CDS |
| TCATCATTATGATCCTGCAG+AGG | 0.695986 | 5_3:-52276888 | Msa0817280:CDS |
| TTGAACAGAAGACTATGTGG+GGG | 0.724066 | 5_3:-52275787 | Msa0817280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATAATTGAATATAATA+TGG | + | chr5_3:52274582-52274601 | None:intergenic | 10.0% |
| !!! | TTTTGTAATTTTTCTTAAGT+GGG | + | chr5_3:52273471-52273490 | None:intergenic | 15.0% |
| !!! | TTTTTGTAATTTTTCTTAAG+TGG | + | chr5_3:52273472-52273491 | None:intergenic | 15.0% |
| !!! | TTTCATTTGATTTCATTAAA+AGG | - | chr5_3:52273532-52273551 | Msa0817280:CDS | 15.0% |
| !!! | TTCATTTGATTTCATTAAAA+GGG | - | chr5_3:52273533-52273552 | Msa0817280:CDS | 15.0% |
| !!! | ATACTTTTTTGACTTATTTT+TGG | - | chr5_3:52274439-52274458 | Msa0817280:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGACTCA+AGG | - | chr5_3:52274615-52274634 | Msa0817280:CDS | 15.0% |
| !!! | ATTTTGCTATCATTTATAAT+TGG | - | chr5_3:52275020-52275039 | Msa0817280:intron | 15.0% |
| !! | TATAGATTAAAGTTATTCAT+TGG | + | chr5_3:52276085-52276104 | None:intergenic | 15.0% |
| !!! | TAAAATTGAAATGTTTTTAC+CGG | - | chr5_3:52276856-52276875 | Msa0817280:CDS | 15.0% |
| !! | AATAATAAGCTAAATACATT+AGG | + | chr5_3:52277577-52277596 | None:intergenic | 15.0% |
| !! | AGTTCAAATAATAGTTTCAT+GGG | + | chr5_3:52273505-52273524 | None:intergenic | 20.0% |
| !! | AAGTTCAAATAATAGTTTCA+TGG | + | chr5_3:52273506-52273525 | None:intergenic | 20.0% |
| !!! | TTTTCATATGAATCCAAAAA+AGG | - | chr5_3:52273602-52273621 | Msa0817280:CDS | 20.0% |
| !! | CTTATTGAATCATGAAAATT+TGG | - | chr5_3:52273830-52273849 | Msa0817280:intron | 20.0% |
| !! | GTATTATTTGGACTAATAAT+TGG | - | chr5_3:52274507-52274526 | Msa0817280:intron | 20.0% |
| !! | ACAATACTATTGATGTAATT+AGG | - | chr5_3:52274652-52274671 | Msa0817280:CDS | 20.0% |
| !! | ATAATCTATGGAAATTGTTT+AGG | - | chr5_3:52275097-52275116 | Msa0817280:intron | 20.0% |
| !! | TTAAAACAAGATTTGTGATA+TGG | + | chr5_3:52275309-52275328 | None:intergenic | 20.0% |
| !! | AATTATGAAACAATTTAGAG+TGG | + | chr5_3:52276046-52276065 | None:intergenic | 20.0% |
| !! | AACAATATAGAGTAATTAAG+AGG | + | chr5_3:52276407-52276426 | None:intergenic | 20.0% |
| !!! | TGATCTACAATTTTTTCATA+AGG | + | chr5_3:52276780-52276799 | None:intergenic | 20.0% |
| !!! | TAAATTGATGATTCACTAAA+TGG | + | chr5_3:52276812-52276831 | None:intergenic | 20.0% |
| !! | AATATGTGTATATACCTTTA+AGG | + | chr5_3:52276952-52276971 | None:intergenic | 20.0% |
| !! | AATGAAGCTGTTAATAAATA+TGG | - | chr5_3:52277286-52277305 | Msa0817280:intron | 20.0% |
| !! | AGTAAAGTACCATATATACA+TGG | + | chr5_3:52273341-52273360 | None:intergenic | 25.0% |
| ! | TTTGAATATCAAAGTGCATA+AGG | + | chr5_3:52273419-52273438 | None:intergenic | 25.0% |
| ! | TTGGAGTAAAATTGTGTAAA+GGG | + | chr5_3:52273448-52273467 | None:intergenic | 25.0% |
| ! | ATGAATGTAATAACATGTGT+CGG | - | chr5_3:52273734-52273753 | Msa0817280:CDS | 25.0% |
| ! | ATTGAATCATGAAAATTTGG+TGG | - | chr5_3:52273833-52273852 | Msa0817280:intron | 25.0% |
| ! | TGAAGAAAAATGAAATTGAG+TGG | + | chr5_3:52274031-52274050 | None:intergenic | 25.0% |
| !!! | TGATTCTTGTTTGTTATGAA+TGG | - | chr5_3:52274067-52274086 | Msa0817280:intron | 25.0% |
| !!! | TGTGTGATTTTTTAGAAACA+TGG | - | chr5_3:52274202-52274221 | Msa0817280:CDS | 25.0% |
| ! | CTTATTATGTACTAAATCCA+CGG | - | chr5_3:52274272-52274291 | Msa0817280:intron | 25.0% |
| !! | ATTATTTGGTGATTTGTAAG+AGG | + | chr5_3:52274302-52274321 | None:intergenic | 25.0% |
| ! | GCGTTAACATAGTAATTATT+TGG | + | chr5_3:52274316-52274335 | None:intergenic | 25.0% |
| !!! | AGTATACTTTCTAAAGTTTG+AGG | + | chr5_3:52274424-52274443 | None:intergenic | 25.0% |
| ! | AAGTGAGACTTAGTATTATT+TGG | - | chr5_3:52274495-52274514 | Msa0817280:intron | 25.0% |
| ! | AAAATTAAGTACCAACCATT+TGG | + | chr5_3:52274758-52274777 | None:intergenic | 25.0% |
| ! | AAATGATGAAGATTATGGAA+AGG | - | chr5_3:52274886-52274905 | Msa0817280:CDS | 25.0% |
| ! | CAACAAACAAAAAAATAGTC+AGG | + | chr5_3:52275258-52275277 | None:intergenic | 25.0% |
| ! | CTAATGTCATAGTTCTTATA+AGG | + | chr5_3:52275445-52275464 | None:intergenic | 25.0% |
| ! | GAAGTAAATTATCAATGAGA+GGG | + | chr5_3:52275545-52275564 | None:intergenic | 25.0% |
| ! | TGAAGTAAATTATCAATGAG+AGG | + | chr5_3:52275546-52275565 | None:intergenic | 25.0% |
| !!! | AAGTTATTCATTGGTTGTTT+TGG | + | chr5_3:52276076-52276095 | None:intergenic | 25.0% |
| ! | CATAATAATCTCTGATTGAA+TGG | + | chr5_3:52276245-52276264 | None:intergenic | 25.0% |
| ! | TCAATCAGAGATTATTATGA+AGG | - | chr5_3:52276246-52276265 | Msa0817280:intron | 25.0% |
| ! | TGTGTTAAAATATCATACAC+TGG | + | chr5_3:52276496-52276515 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTGATTAGAATG+TGG | - | chr5_3:52276524-52276543 | Msa0817280:intron | 25.0% |
| !!! | CATTTTCTTATTAGCTTTTG+AGG | + | chr5_3:52276671-52276690 | None:intergenic | 25.0% |
| ! | TTTCATAAGGTAATTTCTGA+GGG | + | chr5_3:52276767-52276786 | None:intergenic | 25.0% |
| !! | TTTTCATAAGGTAATTTCTG+AGG | + | chr5_3:52276768-52276787 | None:intergenic | 25.0% |
| !!! | GTTTTTACCGGATATTTTTA+TGG | - | chr5_3:52276868-52276887 | Msa0817280:CDS | 25.0% |
| !! | CATATTTTTCATCCTTATGT+TGG | - | chr5_3:52276966-52276985 | Msa0817280:CDS | 25.0% |
| ! | TTGTTCATCTTGAAATATGT+AGG | - | chr5_3:52277022-52277041 | Msa0817280:intron | 25.0% |
| ! | TCTCATGTTGAAAACAAATT+GGG | - | chr5_3:52277196-52277215 | Msa0817280:intron | 25.0% |
| TGATTGATATGATCAGAAGA+AGG | + | chr5_3:52273308-52273327 | None:intergenic | 30.0% | |
| CTTTCTCATCCATGTATATA+TGG | - | chr5_3:52273329-52273348 | Msa0817280:three_prime_UTR | 30.0% | |
| AGAAAAAGAGAAAAGAGAGA+AGG | + | chr5_3:52273366-52273385 | None:intergenic | 30.0% | |
| GTTGGAGTAAAATTGTGTAA+AGG | + | chr5_3:52273449-52273468 | None:intergenic | 30.0% | |
| ! | GTAATTTTTCTTAAGTGGGT+TGG | + | chr5_3:52273467-52273486 | None:intergenic | 30.0% |
| !!! | CTAGACAATCATACCTTTTT+TGG | + | chr5_3:52273618-52273637 | None:intergenic | 30.0% |
| TTTGATGTTTGTGTTTGTGA+CGG | + | chr5_3:52273663-52273682 | None:intergenic | 30.0% | |
| ACAAACACAAACATCAAACA+TGG | - | chr5_3:52273665-52273684 | Msa0817280:CDS | 30.0% | |
| ! | TTAGTAAGCTTTTCAAAGGT+GGG | - | chr5_3:52273914-52273933 | Msa0817280:CDS | 30.0% |
| !! | TTCTTGTTTGTTATGAATGG+AGG | - | chr5_3:52274070-52274089 | Msa0817280:intron | 30.0% |
| TGTTGGAACTTATTGAATGT+TGG | + | chr5_3:52274180-52274199 | None:intergenic | 30.0% | |
| CTAAAAAATCACACACATGT+TGG | + | chr5_3:52274197-52274216 | None:intergenic | 30.0% | |
| !!! | GTGATTTTTTAGAAACATGG+TGG | - | chr5_3:52274205-52274224 | Msa0817280:CDS | 30.0% |
| TTCATCTTGATGAGATCAAT+AGG | + | chr5_3:52274477-52274496 | None:intergenic | 30.0% | |
| GGAGAAAATGATGAAGATTA+TGG | - | chr5_3:52274881-52274900 | Msa0817280:CDS | 30.0% | |
| CTGTATTCATTGGGATAAAA+TGG | + | chr5_3:52274962-52274981 | None:intergenic | 30.0% | |
| ! | CATTTTATCCCAATGAATAC+AGG | - | chr5_3:52274960-52274979 | Msa0817280:intron | 30.0% |
| AGATTTCACCTGTATTCATT+GGG | + | chr5_3:52274971-52274990 | None:intergenic | 30.0% | |
| AAGATTTCACCTGTATTCAT+TGG | + | chr5_3:52274972-52274991 | None:intergenic | 30.0% | |
| GATCTCAAAATCTCATAAAG+AGG | + | chr5_3:52275206-52275225 | None:intergenic | 30.0% | |
| GGAAGATTAATCTTACAAAC+TGG | + | chr5_3:52275365-52275384 | None:intergenic | 30.0% | |
| AGAATAACTTGAGTAAGCAA+AGG | + | chr5_3:52275386-52275405 | None:intergenic | 30.0% | |
| !! | TTCAAAAGTCCAGCTTTATT+CGG | + | chr5_3:52275502-52275521 | None:intergenic | 30.0% |
| AATTATCAATGAGAGGGAAA+TGG | + | chr5_3:52275539-52275558 | None:intergenic | 30.0% | |
| !!! | TAAGTTGTTTTTCGCAAACA+GGG | + | chr5_3:52275638-52275657 | None:intergenic | 30.0% |
| !!! | TTAAGTTGTTTTTCGCAAAC+AGG | + | chr5_3:52275639-52275658 | None:intergenic | 30.0% |
| TTGTATAAACTCTACCAAAC+AGG | - | chr5_3:52275799-52275818 | Msa0817280:intron | 30.0% | |
| TCAAAAAAGCTAGTCAAAAC+AGG | - | chr5_3:52275847-52275866 | Msa0817280:intron | 30.0% | |
| ! | ATGAGATGGACAATACTTTT+GGG | + | chr5_3:52275963-52275982 | None:intergenic | 30.0% |
| GTATTGTCATATTCATGAGA+TGG | + | chr5_3:52275977-52275996 | None:intergenic | 30.0% | |
| !! | TACTCTATATTGTTTCTGTC+AGG | - | chr5_3:52276413-52276432 | Msa0817280:intron | 30.0% |
| !! | ACTCTATATTGTTTCTGTCA+GGG | - | chr5_3:52276414-52276433 | Msa0817280:intron | 30.0% |
| !! | TGTTGTTTCAGATTCATAGA+AGG | - | chr5_3:52276603-52276622 | Msa0817280:intron | 30.0% |
| ACAGCAATTCTTGTTCTATA+TGG | - | chr5_3:52276698-52276717 | Msa0817280:intron | 30.0% | |
| TTCATAAGGTAATTTCTGAG+GGG | + | chr5_3:52276766-52276785 | None:intergenic | 30.0% | |
| TTTAGTGCTTGAAATAGAAC+AGG | - | chr5_3:52276828-52276847 | Msa0817280:intron | 30.0% | |
| GTCTCATGTTGAAAACAAAT+TGG | - | chr5_3:52277195-52277214 | Msa0817280:intron | 30.0% | |
| ACATGTGTTCTTATTACACA+GGG | + | chr5_3:52277354-52277373 | None:intergenic | 30.0% | |
| AACATGTGTTCTTATTACAC+AGG | + | chr5_3:52277355-52277374 | None:intergenic | 30.0% | |
| ATTGTTCTACAAGTGACTAT+TGG | - | chr5_3:52277414-52277433 | Msa0817280:intron | 30.0% | |
| !!! | TTGGTCTTTTTTATCCAACT+TGG | - | chr5_3:52277433-52277452 | Msa0817280:intron | 30.0% |
| GGTGTTTCATGTAAGTAACA+TGG | + | chr5_3:52273642-52273661 | None:intergenic | 35.0% | |
| GTTTGTGATCACTATTCAAG+AGG | - | chr5_3:52273796-52273815 | Msa0817280:CDS | 35.0% | |
| !! | ATGAAAATTTGGTGGTGATC+AGG | - | chr5_3:52273841-52273860 | Msa0817280:intron | 35.0% |
| !! | TGAAAATTTGGTGGTGATCA+GGG | - | chr5_3:52273842-52273861 | Msa0817280:intron | 35.0% |
| ! | GAAAGTCTGGTTTCATGAAA+TGG | - | chr5_3:52273890-52273909 | Msa0817280:intron | 35.0% |
| ! | TGGCTTAGTAAGCTTTTCAA+AGG | - | chr5_3:52273910-52273929 | Msa0817280:intron | 35.0% |
| ! | CTTAGTAAGCTTTTCAAAGG+TGG | - | chr5_3:52273913-52273932 | Msa0817280:intron | 35.0% |
| !! | TTGTTTACCAAAGCTCTAGA+TGG | + | chr5_3:52274006-52274025 | None:intergenic | 35.0% |
| GAAACATATGTGCAACTAAG+GGG | + | chr5_3:52274158-52274177 | None:intergenic | 35.0% | |
| GGAAACATATGTGCAACTAA+GGG | + | chr5_3:52274159-52274178 | None:intergenic | 35.0% | |
| TGGAAACATATGTGCAACTA+AGG | + | chr5_3:52274160-52274179 | None:intergenic | 35.0% | |
| TATGTTAACGCATTCTCTAG+TGG | - | chr5_3:52274325-52274344 | Msa0817280:intron | 35.0% | |
| GAAGATATGAAGAGACCAAA+TGG | - | chr5_3:52274740-52274759 | Msa0817280:intron | 35.0% | |
| ATATGAAGAGACCAAATGGT+TGG | - | chr5_3:52274744-52274763 | Msa0817280:intron | 35.0% | |
| !!! | AAAAGTGCTTTTTGCTCACT+TGG | - | chr5_3:52274783-52274802 | Msa0817280:intron | 35.0% |
| TTATTTGCATTAGCCCATCA+AGG | - | chr5_3:52274845-52274864 | Msa0817280:CDS | 35.0% | |
| !! | TAATTGGTAATGTGTGTGTG+TGG | - | chr5_3:52275036-52275055 | Msa0817280:intron | 35.0% |
| CATTGAACAGAAGACTATGT+GGG | - | chr5_3:52275059-52275078 | Msa0817280:intron | 35.0% | |
| ATTGAACAGAAGACTATGTG+GGG | - | chr5_3:52275060-52275079 | Msa0817280:intron | 35.0% | |
| TGCAATCAGGAGATAATCTA+TGG | - | chr5_3:52275085-52275104 | Msa0817280:intron | 35.0% | |
| ! | TGATCCAAGTTTTCTTTGTC+AGG | - | chr5_3:52275276-52275295 | Msa0817280:intron | 35.0% |
| ! | GATCCAAGTTTTCTTTGTCA+GGG | - | chr5_3:52275277-52275296 | Msa0817280:intron | 35.0% |
| ! | GGAAGCAAACTTCACATTTT+GGG | + | chr5_3:52275344-52275363 | None:intergenic | 35.0% |
| ! | TGGAAGCAAACTTCACATTT+TGG | + | chr5_3:52275345-52275364 | None:intergenic | 35.0% |
| ACATGTGTCTATGCTATAAG+TGG | + | chr5_3:52275666-52275685 | None:intergenic | 35.0% | |
| ATCAAACCAGCAGCATTTAT+AGG | + | chr5_3:52275914-52275933 | None:intergenic | 35.0% | |
| !!! | AATACTTTTGGGACCAAAAG+GGG | + | chr5_3:52275952-52275971 | None:intergenic | 35.0% |
| !!! | CAATACTTTTGGGACCAAAA+GGG | + | chr5_3:52275953-52275972 | None:intergenic | 35.0% |
| !!! | ACAATACTTTTGGGACCAAA+AGG | + | chr5_3:52275954-52275973 | None:intergenic | 35.0% |
| ! | CATGAGATGGACAATACTTT+TGG | + | chr5_3:52275964-52275983 | None:intergenic | 35.0% |
| CTGTAGTTGTGAAAGATTAG+AGG | - | chr5_3:52276006-52276025 | Msa0817280:intron | 35.0% | |
| CTATAGTATTTCGTATTCCG+AGG | + | chr5_3:52276144-52276163 | None:intergenic | 35.0% | |
| TACGAAATACTATAGACTCG+AGG | - | chr5_3:52276149-52276168 | Msa0817280:CDS | 35.0% | |
| AAATACTATAGACTCGAGGA+CGG | - | chr5_3:52276153-52276172 | Msa0817280:CDS | 35.0% | |
| !! | GAATCTGCTATAATGGATAC+TGG | - | chr5_3:52276201-52276220 | Msa0817280:intron | 35.0% |
| TCTCTGATTGAATGGTATAG+AGG | + | chr5_3:52276237-52276256 | None:intergenic | 35.0% | |
| ! | TCTCTTTCAACAAGAAGCAT+GGG | + | chr5_3:52276300-52276319 | None:intergenic | 35.0% |
| TTCTCTTTCAACAAGAAGCA+TGG | + | chr5_3:52276301-52276320 | None:intergenic | 35.0% | |
| GCACTTAATGATGCTATTGT+TGG | - | chr5_3:52276321-52276340 | Msa0817280:intron | 35.0% | |
| AACAAGAGGTTTATGCCTTT+CGG | - | chr5_3:52276455-52276474 | Msa0817280:intron | 35.0% | |
| ATTCATAGAAGGCCAAGAAT+TGG | - | chr5_3:52276614-52276633 | Msa0817280:intron | 35.0% | |
| TTCTCATGCCTATAAGTCTA+TGG | + | chr5_3:52276643-52276662 | None:intergenic | 35.0% | |
| TTGTTCTATATGGTCTACCA+AGG | - | chr5_3:52276708-52276727 | Msa0817280:intron | 35.0% | |
| CTGCATGCCATAAAAATATC+CGG | + | chr5_3:52276878-52276897 | None:intergenic | 35.0% | |
| GAAGTTGGAATACCAACATA+AGG | + | chr5_3:52276981-52277000 | None:intergenic | 35.0% | |
| AGTCATGTATGCTTAGAAGT+TGG | + | chr5_3:52276996-52277015 | None:intergenic | 35.0% | |
| AATGATTCTTCTCCAGCTTA+TGG | - | chr5_3:52277244-52277263 | Msa0817280:intron | 35.0% | |
| GAACACATGTTCTCTAAGTA+TGG | - | chr5_3:52277364-52277383 | Msa0817280:intron | 35.0% | |
| ATCAGAAGAAGGAGCCATAA+GGG | + | chr5_3:52273297-52273316 | None:intergenic | 40.0% | |
| ! | AACCCAATTGAAGGCATGTT+CGG | + | chr5_3:52273779-52273798 | None:intergenic | 40.0% |
| GTGATCACAAACCCAATTGA+AGG | + | chr5_3:52273788-52273807 | None:intergenic | 40.0% | |
| !! | GAAAATTTGGTGGTGATCAG+GGG | - | chr5_3:52273843-52273862 | Msa0817280:intron | 40.0% |
| TGAAACCAGACTTTCTCTCT+GGG | + | chr5_3:52273885-52273904 | None:intergenic | 40.0% | |
| ATGAAACCAGACTTTCTCTC+TGG | + | chr5_3:52273886-52273905 | None:intergenic | 40.0% | |
| TCATCATTATGATCCTGCAG+AGG | - | chr5_3:52273960-52273979 | Msa0817280:intron | 40.0% | |
| TTCCATTCCCTTGACTAAGA+TGG | - | chr5_3:52274547-52274566 | Msa0817280:CDS | 40.0% | |
| TTCCATCTTAGTCAAGGGAA+TGG | + | chr5_3:52274552-52274571 | None:intergenic | 40.0% | |
| TCCTCTTCCATCTTAGTCAA+GGG | + | chr5_3:52274557-52274576 | None:intergenic | 40.0% | |
| TTCCTCTTCCATCTTAGTCA+AGG | + | chr5_3:52274558-52274577 | None:intergenic | 40.0% | |
| CAGAAGGAGAAAGAGGATTT+AGG | - | chr5_3:52274692-52274711 | Msa0817280:CDS | 40.0% | |
| CTGAAGAAAGTGACATTGCA+TGG | + | chr5_3:52274718-52274737 | None:intergenic | 40.0% | |
| CATTAGCCCATCAAGGATAT+AGG | - | chr5_3:52274852-52274871 | Msa0817280:CDS | 40.0% | |
| ! | TAAAATGGTGCAGGAGCATA+AGG | + | chr5_3:52274947-52274966 | None:intergenic | 40.0% |
| TCATTGGGATAAAATGGTGC+AGG | + | chr5_3:52274956-52274975 | None:intergenic | 40.0% | |
| GCATTGAACAGAAGACTATG+TGG | - | chr5_3:52275058-52275077 | Msa0817280:intron | 40.0% | |
| TTGAACAGAAGACTATGTGG+GGG | - | chr5_3:52275061-52275080 | Msa0817280:intron | 40.0% | |
| TGGAAATTGTTTAGGCTGCA+TGG | - | chr5_3:52275105-52275124 | Msa0817280:intron | 40.0% | |
| TAATGGGAGAATGACAAGAG+TGG | + | chr5_3:52275162-52275181 | None:intergenic | 40.0% | |
| CTTCCCTGACAAAGAAAACT+TGG | + | chr5_3:52275283-52275302 | None:intergenic | 40.0% | |
| TCGGAGACTAGAATGCTAAT+TGG | + | chr5_3:52275483-52275502 | None:intergenic | 40.0% | |
| TTCTAGTCTCCGAATAAAGC+TGG | - | chr5_3:52275490-52275509 | Msa0817280:intron | 40.0% | |
| GTCAACTCCTGTCTATCAAT+TGG | - | chr5_3:52275591-52275610 | Msa0817280:intron | 40.0% | |
| TGTTAGGCCAATTGATAGAC+AGG | + | chr5_3:52275601-52275620 | None:intergenic | 40.0% | |
| GGCCTAACATCTTCACATTT+AGG | - | chr5_3:52275612-52275631 | Msa0817280:intron | 40.0% | |
| GGCCTAAATGTGAAGATGTT+AGG | + | chr5_3:52275617-52275636 | None:intergenic | 40.0% | |
| ATAGACACATGTTGCACAAG+TGG | - | chr5_3:52275674-52275693 | Msa0817280:intron | 40.0% | |
| ! | TAAGCACTTTTGAGCCTGTT+TGG | + | chr5_3:52275816-52275835 | None:intergenic | 40.0% |
| CAGATTCCTATAAATGCTGC+TGG | - | chr5_3:52275905-52275924 | Msa0817280:CDS | 40.0% | |
| TTATCTTCCTCTTGAAGCCT+CGG | - | chr5_3:52276124-52276143 | Msa0817280:CDS | 40.0% | |
| AATACTATAGACTCGAGGAC+GGG | - | chr5_3:52276154-52276173 | Msa0817280:CDS | 40.0% | |
| GTGCATGGAATCTGCTATAA+TGG | - | chr5_3:52276194-52276213 | Msa0817280:intron | 40.0% | |
| !! | AACCTCTTGTTTCTGGCAAA+TGG | + | chr5_3:52276446-52276465 | None:intergenic | 40.0% |
| ! | AGGCATAAACCTCTTGTTTC+TGG | + | chr5_3:52276453-52276472 | None:intergenic | 40.0% |
| ATTGGAGGCCATAGACTTAT+AGG | - | chr5_3:52276632-52276651 | Msa0817280:intron | 40.0% | |
| ATGGTCTACCAAGGTAACTA+TGG | - | chr5_3:52276717-52276736 | Msa0817280:intron | 40.0% | |
| AACTATGGACAGTGGAAACT+TGG | - | chr5_3:52276732-52276751 | Msa0817280:intron | 40.0% | |
| !! | CGGATATTTTTATGGCATGC+AGG | - | chr5_3:52276876-52276895 | Msa0817280:CDS | 40.0% |
| GTCAGGTTCTGTCATATATG+TGG | - | chr5_3:52277083-52277102 | Msa0817280:intron | 40.0% | |
| !! | ATGCAATGAGAGTTTGTTGC+TGG | + | chr5_3:52277127-52277146 | None:intergenic | 40.0% |
| AGCAACAAACTCTCATTGCA+TGG | - | chr5_3:52277126-52277145 | Msa0817280:intron | 40.0% | |
| AGACTTTGCACCTTTCTTTG+AGG | + | chr5_3:52277179-52277198 | None:intergenic | 40.0% | |
| CTCGAACATATTCGTTTGAC+TGG | - | chr5_3:52277322-52277341 | Msa0817280:intron | 40.0% | |
| TTATCCAACTTGGTCTCTTG+TGG | - | chr5_3:52277443-52277462 | Msa0817280:intron | 40.0% | |
| ! | GTGGATTGCTTCAAAACTCA+AGG | - | chr5_3:52277462-52277481 | Msa0817280:intron | 40.0% |
| AGGCTCGAACAACTTCTATA+TGG | - | chr5_3:52277492-52277511 | Msa0817280:intron | 40.0% | |
| AACTTCTATATGGTCCTGTG+AGG | - | chr5_3:52277502-52277521 | Msa0817280:intron | 40.0% | |
| GATCAGAAGAAGGAGCCATA+AGG | + | chr5_3:52273298-52273317 | None:intergenic | 45.0% | |
| ACACCGAACATGCCTTCAAT+TGG | - | chr5_3:52273773-52273792 | Msa0817280:CDS | 45.0% | |
| CACCGAACATGCCTTCAATT+GGG | - | chr5_3:52273774-52273793 | Msa0817280:CDS | 45.0% | |
| TTCAAAGGTGGGTCCAATAG+AGG | - | chr5_3:52273925-52273944 | Msa0817280:CDS | 45.0% | |
| CATTATGATCCTGCAGAGGA+AGG | - | chr5_3:52273964-52273983 | Msa0817280:intron | 45.0% | |
| ACATATGTGCAACTAAGGGG+AGG | + | chr5_3:52274155-52274174 | None:intergenic | 45.0% | |
| GATTTGTAAGAGGATCACCG+TGG | + | chr5_3:52274292-52274311 | None:intergenic | 45.0% | |
| TCCCTTGACTAAGATGGAAG+AGG | - | chr5_3:52274553-52274572 | Msa0817280:CDS | 45.0% | |
| TAGAGCTCAGAAGGAGAAAG+AGG | - | chr5_3:52274685-52274704 | Msa0817280:CDS | 45.0% | |
| TAGCCCATCAAGGATATAGG+TGG | - | chr5_3:52274855-52274874 | Msa0817280:CDS | 45.0% | |
| AGCCCATCAAGGATATAGGT+GGG | - | chr5_3:52274856-52274875 | Msa0817280:CDS | 45.0% | |
| ! | AGTATAGATGCCACCCCTTT+TGG | - | chr5_3:52275936-52275955 | Msa0817280:CDS | 45.0% |
| AAGCTTGTGCTTAGAGTGCA+TGG | - | chr5_3:52276179-52276198 | Msa0817280:intron | 45.0% | |
| CACCATTTGCCAGAAACAAG+AGG | - | chr5_3:52276441-52276460 | Msa0817280:intron | 45.0% | |
| ! | TCACAGTTTGCTCTTCCGAA+AGG | + | chr5_3:52276473-52276492 | None:intergenic | 45.0% |
| CATAGAAGGCCAAGAATTGG+AGG | - | chr5_3:52276617-52276636 | Msa0817280:intron | 45.0% | |
| AGTCTATGGCCTCCAATTCT+TGG | + | chr5_3:52276629-52276648 | None:intergenic | 45.0% | |
| ACCAAGGTAACTATGGACAG+TGG | - | chr5_3:52276724-52276743 | Msa0817280:intron | 45.0% | |
| TCCACTGTCCATAGTTACCT+TGG | + | chr5_3:52276728-52276747 | None:intergenic | 45.0% | |
| ATGGCATGCAGGTTACTAAC+AGG | - | chr5_3:52276887-52276906 | Msa0817280:CDS | 45.0% | |
| CCATGCATGCATCAACTCAT+GGG | + | chr5_3:52276924-52276943 | None:intergenic | 45.0% | |
| ACCATGCATGCATCAACTCA+TGG | + | chr5_3:52276925-52276944 | None:intergenic | 45.0% | |
| CATGCATGGTTACGCCTTAA+AGG | - | chr5_3:52276935-52276954 | Msa0817280:CDS | 45.0% | |
| CAATCTCAGTCCTGAAGTAG+AGG | - | chr5_3:52277051-52277070 | Msa0817280:intron | 45.0% | |
| CATATGCCTTCCTCTACTTC+AGG | + | chr5_3:52277064-52277083 | None:intergenic | 45.0% | |
| ! | AGTAGAGGAAGGCATATGTC+AGG | - | chr5_3:52277066-52277085 | Msa0817280:intron | 45.0% |
| GCTGCTTCTTCCTCAAAGAA+AGG | - | chr5_3:52277166-52277185 | Msa0817280:intron | 45.0% | |
| GATTCTTCTCCAGCTTATGG+TGG | - | chr5_3:52277247-52277266 | Msa0817280:intron | 45.0% | |
| CTAAAACCACCACCATAAGC+TGG | + | chr5_3:52277259-52277278 | None:intergenic | 45.0% | |
| CAATCCACAAGAGACCAAGT+TGG | + | chr5_3:52277450-52277469 | None:intergenic | 45.0% | |
| TCAAAACTCAAGGCAGAGAG+AGG | - | chr5_3:52277472-52277491 | Msa0817280:intron | 45.0% | |
| TTGTACTCTGACATCCTCAC+AGG | + | chr5_3:52277519-52277538 | None:intergenic | 45.0% | |
| AGAGTGAGGGAAGAAGGAAG+AGG | + | chr5_3:52273274-52273293 | None:intergenic | 50.0% | |
| TAAGGGAGAGTGAGGGAAGA+AGG | + | chr5_3:52273280-52273299 | None:intergenic | 50.0% | |
| TCTTCCCTCACTCTCCCTTA+TGG | - | chr5_3:52273280-52273299 | Msa0817280:three_prime_UTR | 50.0% | |
| TCACACCCAGAGAGAAAGTC+TGG | - | chr5_3:52273877-52273896 | Msa0817280:intron | 50.0% | |
| AAGGTGGGTCCAATAGAGGA+AGG | - | chr5_3:52273929-52273948 | Msa0817280:CDS | 50.0% | |
| ACGACCACTCCTTCCTCTAT+TGG | + | chr5_3:52273941-52273960 | None:intergenic | 50.0% | |
| TGTCGTGAACATTAGCGCAG+TGG | + | chr5_3:52274392-52274411 | None:intergenic | 50.0% | |
| TGATCGTGCTAGAGCTCAGA+AGG | - | chr5_3:52274676-52274695 | Msa0817280:CDS | 50.0% | |
| GCCCATCAAGGATATAGGTG+GGG | - | chr5_3:52274857-52274876 | Msa0817280:CDS | 50.0% | |
| CCCCCACCTATATCCTTGAT+GGG | + | chr5_3:52274861-52274880 | None:intergenic | 50.0% | |
| CCCATCAAGGATATAGGTGG+GGG | - | chr5_3:52274858-52274877 | Msa0817280:CDS | 50.0% | |
| CCATCAAGGATATAGGTGGG+GGG | - | chr5_3:52274859-52274878 | Msa0817280:CDS | 50.0% | |
| CATCAAGGATATAGGTGGGG+GGG | - | chr5_3:52274860-52274879 | Msa0817280:CDS | 50.0% | |
| ! | ATGGTGCAGGAGCATAAGGA+GGG | + | chr5_3:52274943-52274962 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGAGCATAAGG+AGG | + | chr5_3:52274944-52274963 | None:intergenic | 50.0% |
| !!! | ACTTTTGGGACCAAAAGGGG+TGG | + | chr5_3:52275949-52275968 | None:intergenic | 50.0% |
| TCGTATTCCGAGGCTTCAAG+AGG | + | chr5_3:52276134-52276153 | None:intergenic | 50.0% | |
| !! | CCCATGAGTTGATGCATGCA+TGG | - | chr5_3:52276921-52276940 | Msa0817280:CDS | 50.0% |
| CTCAGTCCTGAAGTAGAGGA+AGG | - | chr5_3:52277055-52277074 | Msa0817280:intron | 50.0% | |
| TCTTCTCCAGCTTATGGTGG+TGG | - | chr5_3:52277250-52277269 | Msa0817280:intron | 50.0% | |
| GGAGCCATAAGGGAGAGTGA+GGG | + | chr5_3:52273287-52273306 | None:intergenic | 55.0% | |
| AGGAGCCATAAGGGAGAGTG+AGG | + | chr5_3:52273288-52273307 | None:intergenic | 55.0% | |
| GGGTCCAATAGAGGAAGGAG+TGG | - | chr5_3:52273934-52273953 | Msa0817280:CDS | 55.0% | |
| CAAGACATGCCTTCCTCTGC+AGG | + | chr5_3:52273976-52273995 | None:intergenic | 55.0% | |
| ! | CTGCAGAGGAAGGCATGTCT+TGG | - | chr5_3:52273974-52273993 | Msa0817280:intron | 55.0% |
| ! | GCGTGCTCCATCTAGAGCTT+TGG | - | chr5_3:52273996-52274015 | Msa0817280:intron | 55.0% |
| CCCCCCACCTATATCCTTGA+TGG | + | chr5_3:52274862-52274881 | None:intergenic | 55.0% | |
| ACTATGTGGGGGCTGCAATC+AGG | - | chr5_3:52275072-52275091 | Msa0817280:intron | 55.0% | |
| ! | GAGTGGCATCGAAAGCAGTC+TGG | + | chr5_3:52275145-52275164 | None:intergenic | 55.0% |
| ACTACCTCGCGCTCGGTAAT+GGG | + | chr5_3:52275178-52275197 | None:intergenic | 55.0% | |
| AACTACCTCGCGCTCGGTAA+TGG | + | chr5_3:52275179-52275198 | None:intergenic | 55.0% | |
| GGATCAAACTACCTCGCGCT+CGG | + | chr5_3:52275185-52275204 | None:intergenic | 55.0% | |
| TGAGGAAGAAGCAGCAGCTG+TGG | + | chr5_3:52277161-52277180 | None:intergenic | 55.0% | |
| TTCTCCCATTACCGAGCGCG+AGG | - | chr5_3:52275171-52275190 | Msa0817280:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 52273231 | 52277639 | 52273231 | ID=Msa0817280;Name=Msa0817280 |
| chr5_3 | mRNA | 52273231 | 52277639 | 52273231 | ID=Msa0817280-mRNA-1;Parent=Msa0817280;Name=Msa0817280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|0.90|0.83|1|0.81|0.83|12|279|491 |
| chr5_3 | exon | 52273231 | 52273826 | 52273231 | ID=Msa0817280-mRNA-1:exon:15722;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52273914 | 52273972 | 52273914 | ID=Msa0817280-mRNA-1:exon:15721;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52274141 | 52274256 | 52274141 | ID=Msa0817280-mRNA-1:exon:15720;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52274373 | 52274435 | 52274373 | ID=Msa0817280-mRNA-1:exon:15719;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52274517 | 52274729 | 52274517 | ID=Msa0817280-mRNA-1:exon:15718;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52274843 | 52274927 | 52274843 | ID=Msa0817280-mRNA-1:exon:15717;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52275506 | 52275585 | 52275506 | ID=Msa0817280-mRNA-1:exon:15716;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52275678 | 52275801 | 52275678 | ID=Msa0817280-mRNA-1:exon:15715;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52275889 | 52276012 | 52275889 | ID=Msa0817280-mRNA-1:exon:15714;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52276109 | 52276196 | 52276109 | ID=Msa0817280-mRNA-1:exon:15713;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52276853 | 52277007 | 52276853 | ID=Msa0817280-mRNA-1:exon:15712;Parent=Msa0817280-mRNA-1 |
| chr5_3 | exon | 52277520 | 52277639 | 52277520 | ID=Msa0817280-mRNA-1:exon:15711;Parent=Msa0817280-mRNA-1 |
| chr5_3 | five_prime_UTR | 52277572 | 52277639 | 52277572 | ID=Msa0817280-mRNA-1:five_prime_utr;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52277520 | 52277571 | 52277520 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52276853 | 52277007 | 52276853 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52276109 | 52276196 | 52276109 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52275889 | 52276012 | 52275889 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52275678 | 52275801 | 52275678 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52275506 | 52275585 | 52275506 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52274843 | 52274927 | 52274843 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52274517 | 52274729 | 52274517 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52274373 | 52274435 | 52274373 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52274141 | 52274256 | 52274141 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52273914 | 52273972 | 52273914 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | CDS | 52273510 | 52273826 | 52273510 | ID=Msa0817280-mRNA-1:cds;Parent=Msa0817280-mRNA-1 |
| chr5_3 | three_prime_UTR | 52273231 | 52273509 | 52273231 | ID=Msa0817280-mRNA-1:three_prime_utr;Parent=Msa0817280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
