Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818140 | XP_003616636.1 | 99.065 | 214 | 2 | 0 | 1 | 214 | 1 | 214 | 4.38e-151 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818140 | sp|Q39033|PLCD2_ARATH | 65.421 | 214 | 72 | 2 | 1 | 214 | 1 | 212 | 2.15e-99 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818140 | G7KH12 | 99.065 | 214 | 2 | 0 | 1 | 214 | 1 | 214 | 2.09e-151 | 442 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0784410 | Msa0818140 | 0.824621 | 7.308727e-54 | -8.615850e-47 |
| Msa0818140 | Msa1130570 | 0.813240 | 2.828918e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818140 | MtrunA17_Chr5g0437081 | 99.065 | 214 | 2 | 0 | 1 | 214 | 1 | 214 | 4.03e-155 | 442 |
| Msa0818140 | MtrunA17_Chr3g0113531 | 75.000 | 216 | 48 | 3 | 3 | 214 | 7 | 220 | 1.02e-104 | 313 |
| Msa0818140 | MtrunA17_Chr3g0112551 | 71.357 | 199 | 48 | 3 | 17 | 214 | 7 | 197 | 5.68e-86 | 265 |
| Msa0818140 | MtrunA17_Chr5g0430181 | 58.904 | 219 | 79 | 5 | 5 | 214 | 3 | 219 | 2.97e-82 | 256 |
| Msa0818140 | MtrunA17_Chr5g0430191 | 52.511 | 219 | 91 | 5 | 3 | 214 | 17 | 229 | 8.37e-73 | 231 |
| Msa0818140 | MtrunA17_Chr5g0437041 | 46.847 | 222 | 105 | 3 | 6 | 215 | 11 | 231 | 6.61e-62 | 202 |
| Msa0818140 | MtrunA17_Chr5g0437061 | 81.651 | 109 | 20 | 0 | 107 | 215 | 1 | 109 | 2.83e-61 | 199 |
| Msa0818140 | MtrunA17_Chr3g0113521 | 46.190 | 210 | 104 | 4 | 14 | 215 | 15 | 223 | 2.46e-56 | 187 |
| Msa0818140 | MtrunA17_Chr3g0113471 | 47.847 | 209 | 100 | 4 | 15 | 215 | 15 | 222 | 4.85e-54 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818140 | AT3G08510.4 | 65.421 | 214 | 72 | 2 | 1 | 214 | 1 | 212 | 7.13e-101 | 303 |
| Msa0818140 | AT3G08510.3 | 65.421 | 214 | 72 | 2 | 1 | 214 | 1 | 212 | 7.13e-101 | 303 |
| Msa0818140 | AT3G08510.2 | 65.421 | 214 | 72 | 2 | 1 | 214 | 1 | 212 | 2.18e-100 | 302 |
| Msa0818140 | AT3G08510.1 | 65.421 | 214 | 72 | 2 | 1 | 214 | 1 | 212 | 2.18e-100 | 302 |
| Msa0818140 | AT3G55940.1 | 65.421 | 214 | 72 | 2 | 1 | 214 | 1 | 212 | 2.29e-98 | 297 |
| Msa0818140 | AT5G58690.3 | 52.294 | 218 | 93 | 5 | 5 | 214 | 7 | 221 | 5.73e-71 | 226 |
| Msa0818140 | AT5G58690.1 | 52.294 | 218 | 93 | 5 | 5 | 214 | 7 | 221 | 5.73e-71 | 226 |
| Msa0818140 | AT4G38530.1 | 51.869 | 214 | 99 | 2 | 4 | 214 | 3 | 215 | 1.60e-68 | 219 |
| Msa0818140 | AT5G58690.2 | 55.779 | 199 | 77 | 5 | 24 | 214 | 7 | 202 | 1.92e-68 | 219 |
| Msa0818140 | AT5G58670.1 | 52.093 | 215 | 98 | 2 | 3 | 214 | 2 | 214 | 2.58e-68 | 219 |
| Msa0818140 | AT2G40116.1 | 63.636 | 165 | 54 | 3 | 56 | 215 | 84 | 247 | 5.24e-66 | 214 |
| Msa0818140 | AT5G58700.3 | 50.000 | 218 | 97 | 6 | 5 | 214 | 9 | 222 | 6.33e-63 | 206 |
| Msa0818140 | AT5G58700.1 | 50.000 | 218 | 97 | 6 | 5 | 214 | 9 | 222 | 6.33e-63 | 206 |
| Msa0818140 | AT5G58700.2 | 67.857 | 112 | 35 | 1 | 103 | 214 | 4 | 114 | 1.29e-47 | 163 |
| Msa0818140 | AT3G47290.1 | 39.070 | 215 | 110 | 9 | 14 | 214 | 5 | 212 | 7.56e-32 | 121 |
| Msa0818140 | AT3G47290.2 | 39.070 | 215 | 110 | 9 | 14 | 214 | 5 | 212 | 9.68e-32 | 121 |
| Msa0818140 | AT3G47220.1 | 36.111 | 216 | 121 | 7 | 13 | 214 | 5 | 217 | 8.72e-29 | 112 |
Find 45 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTCGCGTCAGAATTTC+CGG | 0.202300 | 5_3:+53653473 | Msa0818140:CDS |
| CTGGAGTAAGATGGTCTTCT+AGG | 0.232724 | 5_3:-53653506 | None:intergenic |
| TAGATGCTTGAGGTCTATTA+AGG | 0.282266 | 5_3:+53653443 | Msa0818140:CDS |
| GACCAGTATATATGAAATAA+TGG | 0.291133 | 5_3:-53652920 | None:intergenic |
| GCCACTTTGGCTTGAAGATC+TGG | 0.311937 | 5_3:-53653525 | None:intergenic |
| TCCCATTATTTCATATATAC+TGG | 0.316971 | 5_3:+53652918 | Msa0818140:CDS |
| TAAGTCCAGCACCCCTTCTA+TGG | 0.337792 | 5_3:-53651300 | None:intergenic |
| GTTTCAAGCATTTCCATAGA+AGG | 0.351861 | 5_3:+53651287 | Msa0818140:CDS |
| GATAATGTTGATGTTCTTCA+TGG | 0.363896 | 5_3:+53653062 | Msa0818140:CDS |
| GTCGCTGCTCAGCTGATTCC+CGG | 0.383750 | 5_3:-53652958 | None:intergenic |
| GGTCACAATTCCTATCTAAC+CGG | 0.390542 | 5_3:+53652939 | Msa0818140:CDS |
| CTCTGCAACGCTTTCACGAT+TGG | 0.394778 | 5_3:-53652993 | None:intergenic |
| CAGCTGATTCCCGGTTAGAT+AGG | 0.433100 | 5_3:-53652949 | None:intergenic |
| ACCAGTATATATGAAATAAT+GGG | 0.446982 | 5_3:-53652919 | None:intergenic |
| CATACAGTGTTTGTTTATGC+TGG | 0.447970 | 5_3:+53651095 | Msa0818140:CDS |
| TCTTCTAGGGTTATTACAAC+CGG | 0.465124 | 5_3:-53653492 | None:intergenic |
| AAGAACATCAACATTATCCT+TGG | 0.475267 | 5_3:-53653057 | None:intergenic |
| TTAACTAACCTCGGCCACTT+TGG | 0.490233 | 5_3:-53653538 | None:intergenic |
| AAGAGGGTCTTGATCTCTTG+TGG | 0.493379 | 5_3:-53651151 | None:intergenic |
| AAGCGTTGCAGAGAGGTGTA+AGG | 0.494457 | 5_3:+53653003 | Msa0818140:CDS |
| TTTCAAGCATTTCCATAGAA+GGG | 0.497387 | 5_3:+53651288 | Msa0818140:CDS |
| ACATTATCCTTGGATGCATT+AGG | 0.497632 | 5_3:-53653047 | None:intergenic |
| CATTTCCATAGAAGGGGTGC+TGG | 0.503533 | 5_3:+53651295 | Msa0818140:CDS |
| AGGTGTAAGGGTAATTGAGT+TGG | 0.519469 | 5_3:+53653016 | Msa0818140:CDS |
| TTCTGAGTATTGTTCAAAGA+GGG | 0.538272 | 5_3:-53651167 | None:intergenic |
| TCTTCAAGCCAAAGTGGCCG+AGG | 0.552882 | 5_3:+53653530 | Msa0818140:CDS |
| TGGAGCTCATTAGATGCTTG+AGG | 0.557147 | 5_3:+53653433 | Msa0818140:CDS |
| AAGCATCTAATGAGCTCCAC+AGG | 0.560130 | 5_3:-53653429 | None:intergenic |
| ACAAAGGTAATGTCATATCA+TGG | 0.560404 | 5_3:-53652896 | None:intergenic |
| ATGTTGATGTTCTTCATGGA+AGG | 0.566931 | 5_3:+53653066 | Msa0818140:CDS |
| CAACTTCAGTTAACTAACCT+CGG | 0.568698 | 5_3:-53653547 | None:intergenic |
| CTTGTGGCCTAATGCATCCA+AGG | 0.569316 | 5_3:+53653040 | Msa0818140:CDS |
| TTCAAGCATTTCCATAGAAG+GGG | 0.569805 | 5_3:+53651289 | Msa0818140:CDS |
| TGGAGTAAGATGGTCTTCTA+GGG | 0.570432 | 5_3:-53653505 | None:intergenic |
| TATATGAAATAATGGGACAA+AGG | 0.576354 | 5_3:-53652912 | None:intergenic |
| TTTCTGAGTATTGTTCAAAG+AGG | 0.578422 | 5_3:-53651168 | None:intergenic |
| CGGAAATTCTGACGCGACGA+AGG | 0.580991 | 5_3:-53653472 | None:intergenic |
| CTTGAAGATCTGGAGTAAGA+TGG | 0.581839 | 5_3:-53653515 | None:intergenic |
| TCCAGATCTTCAAGCCAAAG+TGG | 0.589376 | 5_3:+53653524 | Msa0818140:CDS |
| GGGTAATTGAGTTGGACTTG+TGG | 0.619450 | 5_3:+53653024 | Msa0818140:CDS |
| AGCGTTGCAGAGAGGTGTAA+GGG | 0.624722 | 5_3:+53653004 | Msa0818140:CDS |
| TAGGACATTGACTACTCCTG+TGG | 0.639924 | 5_3:+53653413 | Msa0818140:intron |
| GTCACAATTCCTATCTAACC+GGG | 0.642865 | 5_3:+53652940 | Msa0818140:CDS |
| CAATTGAAGATAAAAGAGCA+AGG | 0.689339 | 5_3:-53651363 | None:intergenic |
| ATCGTGAAAGCGTTGCAGAG+AGG | 0.719532 | 5_3:+53652996 | Msa0818140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTATTAAAGCAA+TGG | - | chr5_3:53652301-53652320 | None:intergenic | 10.0% |
| !! | GATGTATTTAATTCAAAATT+TGG | - | chr5_3:53652098-53652117 | None:intergenic | 15.0% |
| !! | TCATTCATTATATTTGTTTA+AGG | + | chr5_3:53652217-53652236 | Msa0818140:intron | 15.0% |
| !! | CATTCATTATATTTGTTTAA+GGG | + | chr5_3:53652218-53652237 | Msa0818140:intron | 15.0% |
| !!! | GTTTTTTCTGTTTTTTATTT+CGG | + | chr5_3:53652386-53652405 | Msa0818140:intron | 15.0% |
| !!! | TTTTTTCTGTTTTTTATTTC+GGG | + | chr5_3:53652387-53652406 | Msa0818140:intron | 15.0% |
| !!! | ATTTTCAAGAAAATAATTTC+TGG | - | chr5_3:53653360-53653379 | None:intergenic | 15.0% |
| !!! | TTTACATTTTTTTAATCTCT+AGG | + | chr5_3:53653394-53653413 | Msa0818140:intron | 15.0% |
| !!! | TTTCAATTAAGAATCTTTTG+AGG | - | chr5_3:53651216-53651235 | None:intergenic | 20.0% |
| !! | TTCAATTATATTGTTCTTTG+TGG | + | chr5_3:53651492-53651511 | Msa0818140:intron | 20.0% |
| !!! | TTGTCTTTTATTGTCAATTT+AGG | + | chr5_3:53651588-53651607 | Msa0818140:intron | 20.0% |
| !! | GATGTATTTAATGTAGAATT+CGG | - | chr5_3:53651731-53651750 | None:intergenic | 20.0% |
| !! | CTAAACAAAATTGATGTATT+TGG | - | chr5_3:53651991-53652010 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTTTGCAA+TGG | + | chr5_3:53652134-53652153 | Msa0818140:intron | 20.0% |
| !!! | ACAAGTACATATTGTTTTTA+GGG | - | chr5_3:53652195-53652214 | None:intergenic | 20.0% |
| !!! | TACAAGTACATATTGTTTTT+AGG | - | chr5_3:53652196-53652215 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTTTTTTATTTCG+GGG | + | chr5_3:53652388-53652407 | Msa0818140:intron | 20.0% |
| !! | CATCTAAATTCTTTATATTG+TGG | - | chr5_3:53652465-53652484 | None:intergenic | 20.0% |
| !! | ACCAGTATATATGAAATAAT+GGG | - | chr5_3:53652922-53652941 | None:intergenic | 20.0% |
| !! | ATCATTATCAAGAAAATAGA+AGG | - | chr5_3:53653136-53653155 | None:intergenic | 20.0% |
| !!! | AAATAATTTCTGGATACAAT+TGG | - | chr5_3:53653350-53653369 | None:intergenic | 20.0% |
| !! | TTGCTCTTTTATCTTCAATT+GGG | + | chr5_3:53651365-53651384 | Msa0818140:CDS | 25.0% |
| !!! | AAAATGAAAGGCATTAAACA+AGG | - | chr5_3:53651542-53651561 | None:intergenic | 25.0% |
| ! | ACAAAAACTGAGAAAATGAA+AGG | - | chr5_3:53651554-53651573 | None:intergenic | 25.0% |
| ! | TCAATAATCGTTGATGTATT+TGG | + | chr5_3:53651952-53651971 | Msa0818140:intron | 25.0% |
| !! | TTTTTGCTTACATTTTGCAA+CGG | + | chr5_3:53652015-53652034 | Msa0818140:intron | 25.0% |
| ! | TATATGCTAAGTGTATACTT+TGG | + | chr5_3:53652159-53652178 | Msa0818140:intron | 25.0% |
| !!! | CAAGTACATATTGTTTTTAG+GGG | - | chr5_3:53652194-53652213 | None:intergenic | 25.0% |
| ! | TTATATTTGTTTAAGGGTGA+AGG | + | chr5_3:53652224-53652243 | Msa0818140:intron | 25.0% |
| !! | AGTCACTTTCTTTAAGAAAT+GGG | + | chr5_3:53652357-53652376 | Msa0818140:intron | 25.0% |
| !!! | TTCTTTAAGAAATGGGATTT+TGG | + | chr5_3:53652364-53652383 | Msa0818140:intron | 25.0% |
| !!! | ATATACCTAGTTCTAAATTG+TGG | + | chr5_3:53652420-53652439 | Msa0818140:intron | 25.0% |
| ! | TAGCATAATATCAAAGTTTG+CGG | + | chr5_3:53652543-53652562 | Msa0818140:intron | 25.0% |
| !!! | TATCCCATAGTTCTAAATTA+TGG | - | chr5_3:53652580-53652599 | None:intergenic | 25.0% |
| ! | GGTTGAATTGTACATAATTA+AGG | - | chr5_3:53652711-53652730 | None:intergenic | 25.0% |
| !!! | CGGTTTGTTAATTAAAGTTA+TGG | - | chr5_3:53652765-53652784 | None:intergenic | 25.0% |
| ! | TAGTAATGATGATTTATGAG+CGG | - | chr5_3:53652785-53652804 | None:intergenic | 25.0% |
| ! | CTCATAAATCATCATTACTA+AGG | + | chr5_3:53652785-53652804 | Msa0818140:intron | 25.0% |
| !! | TATATGAAATAATGGGACAA+AGG | - | chr5_3:53652915-53652934 | None:intergenic | 25.0% |
| ! | TCCCATTATTTCATATATAC+TGG | + | chr5_3:53652918-53652937 | Msa0818140:CDS | 25.0% |
| ! | GACCAGTATATATGAAATAA+TGG | - | chr5_3:53652923-53652942 | None:intergenic | 25.0% |
| !! | GCTACAAATTCTAGTATTTT+CGG | + | chr5_3:53653183-53653202 | Msa0818140:intron | 25.0% |
| ! | AATAGAAAATCATGATTGTC+AGG | + | chr5_3:53653276-53653295 | Msa0818140:intron | 25.0% |
| ! | GTAAAAATGATATGCTGATA+TGG | - | chr5_3:53653323-53653342 | None:intergenic | 25.0% |
| ! | TTCTGAGTATTGTTCAAAGA+GGG | - | chr5_3:53651170-53651189 | None:intergenic | 30.0% |
| ! | TTTCTGAGTATTGTTCAAAG+AGG | - | chr5_3:53651171-53651190 | None:intergenic | 30.0% |
| !!! | AAGAATCTTTTGAGGTTTGA+AGG | - | chr5_3:53651208-53651227 | None:intergenic | 30.0% |
| TTTCAAGCATTTCCATAGAA+GGG | + | chr5_3:53651288-53651307 | Msa0818140:CDS | 30.0% | |
| CAATTGAAGATAAAAGAGCA+AGG | - | chr5_3:53651366-53651385 | None:intergenic | 30.0% | |
| ! | CTTGCTCTTTTATCTTCAAT+TGG | + | chr5_3:53651364-53651383 | Msa0818140:CDS | 30.0% |
| ! | TGCTCTTTTATCTTCAATTG+GGG | + | chr5_3:53651366-53651385 | Msa0818140:CDS | 30.0% |
| CTTGTACTACATAGTAATTC+AGG | + | chr5_3:53651640-53651659 | Msa0818140:intron | 30.0% | |
| ! | CTTTTGCTAATATTTTGCAG+CGG | + | chr5_3:53651767-53651786 | Msa0818140:intron | 30.0% |
| ATATAATCAAAAGTGAGCCA+AGG | + | chr5_3:53651813-53651832 | Msa0818140:intron | 30.0% | |
| CAAAATACATCAACTTTCCT+TGG | - | chr5_3:53651833-53651852 | None:intergenic | 30.0% | |
| ! | GATGTATTTGGTTCAACATT+TGG | - | chr5_3:53651979-53651998 | None:intergenic | 30.0% |
| ACATGGTGAACTATATGTAT+TGG | + | chr5_3:53652250-53652269 | Msa0818140:intron | 30.0% | |
| ! | CAGTCACTTTCTTTAAGAAA+TGG | + | chr5_3:53652356-53652375 | Msa0818140:intron | 30.0% |
| TTGCAACAAAATTGCAATTG+CGG | + | chr5_3:53652489-53652508 | Msa0818140:intron | 30.0% | |
| ATGCGAAAAAAAAAATGCAG+CGG | - | chr5_3:53652521-53652540 | None:intergenic | 30.0% | |
| ! | CGACCATAATTTAGAACTAT+GGG | + | chr5_3:53652574-53652593 | Msa0818140:intron | 30.0% |
| !!! | TGTGTTTTTTGTTGTATTCC+AGG | + | chr5_3:53652869-53652888 | Msa0818140:intron | 30.0% |
| ACAAAGGTAATGTCATATCA+TGG | - | chr5_3:53652899-53652918 | None:intergenic | 30.0% | |
| AAGAACATCAACATTATCCT+TGG | - | chr5_3:53653060-53653079 | None:intergenic | 30.0% | |
| GATAATGTTGATGTTCTTCA+TGG | + | chr5_3:53653062-53653081 | Msa0818140:CDS | 30.0% | |
| AGGCGATTAAAGTATAAAAG+TGG | - | chr5_3:53653116-53653135 | None:intergenic | 30.0% | |
| CATACAGTGTTTGTTTATGC+TGG | + | chr5_3:53651095-53651114 | Msa0818140:CDS | 35.0% | |
| GTTTCAAGCATTTCCATAGA+AGG | + | chr5_3:53651287-53651306 | Msa0818140:CDS | 35.0% | |
| TTCAAGCATTTCCATAGAAG+GGG | + | chr5_3:53651289-53651308 | Msa0818140:CDS | 35.0% | |
| !!! | CTGAACCTTGTCATGTTTTT+TGG | + | chr5_3:53651443-53651462 | Msa0818140:intron | 35.0% |
| GTTGACCAAAAAACATGACA+AGG | - | chr5_3:53651451-53651470 | None:intergenic | 35.0% | |
| TGGTCAACTGAATCTGTATT+TGG | + | chr5_3:53651463-53651482 | Msa0818140:intron | 35.0% | |
| TTTAAGGGTGAAGGTTAACA+TGG | + | chr5_3:53652233-53652252 | Msa0818140:intron | 35.0% | |
| TTATATTGTGGCTGCAATTG+TGG | - | chr5_3:53652453-53652472 | None:intergenic | 35.0% | |
| ! | GCGACCATAATTTAGAACTA+TGG | + | chr5_3:53652573-53652592 | Msa0818140:intron | 35.0% |
| GAACTATGGGATATACCATA+TGG | + | chr5_3:53652587-53652606 | Msa0818140:intron | 35.0% | |
| TATACCATATGGCATCACAT+TGG | + | chr5_3:53652598-53652617 | Msa0818140:intron | 35.0% | |
| ! | GTTCACACTTTACACACTTT+TGG | + | chr5_3:53652655-53652674 | Msa0818140:intron | 35.0% |
| TATGTACAATTCAACCCTCA+AGG | + | chr5_3:53652715-53652734 | Msa0818140:intron | 35.0% | |
| TCGTTGAAGTAATACCTTGA+GGG | - | chr5_3:53652732-53652751 | None:intergenic | 35.0% | |
| ! | TCAAGGTATTACTTCAACGA+GGG | + | chr5_3:53652732-53652751 | Msa0818140:intron | 35.0% |
| ATTACTTCAACGAGGGTTTA+AGG | + | chr5_3:53652739-53652758 | Msa0818140:intron | 35.0% | |
| ACATTATCCTTGGATGCATT+AGG | - | chr5_3:53653050-53653069 | None:intergenic | 35.0% | |
| ATGTTGATGTTCTTCATGGA+AGG | + | chr5_3:53653066-53653085 | Msa0818140:CDS | 35.0% | |
| !! | TTCTTGATAATGATGTCACC+TGG | + | chr5_3:53653142-53653161 | Msa0818140:intron | 35.0% |
| ! | ATTTTTGCTGCAATTCAACC+AGG | - | chr5_3:53653163-53653182 | None:intergenic | 35.0% |
| TAGATGCTTGAGGTCTATTA+AGG | + | chr5_3:53653443-53653462 | Msa0818140:CDS | 35.0% | |
| !! | TCTTCTAGGGTTATTACAAC+CGG | - | chr5_3:53653495-53653514 | None:intergenic | 35.0% |
| ! | CTATATGTATTGGTCCATCG+CGG | + | chr5_3:53652260-53652279 | Msa0818140:intron | 40.0% |
| !!! | TATTTTTGAGTTCACCGCGA+TGG | - | chr5_3:53652277-53652296 | None:intergenic | 40.0% |
| !!! | TTTTTATTTCGGGGCATTGC+AGG | + | chr5_3:53652397-53652416 | Msa0818140:intron | 40.0% |
| ! | GTGGACCACAATTTAGAACT+AGG | - | chr5_3:53652428-53652447 | None:intergenic | 40.0% |
| AAAGCCAATGTGATGCCATA+TGG | - | chr5_3:53652605-53652624 | None:intergenic | 40.0% | |
| CTCGTTGAAGTAATACCTTG+AGG | - | chr5_3:53652733-53652752 | None:intergenic | 40.0% | |
| ! | CTCAAGGTATTACTTCAACG+AGG | + | chr5_3:53652731-53652750 | Msa0818140:intron | 40.0% |
| GGTCACAATTCCTATCTAAC+CGG | + | chr5_3:53652939-53652958 | Msa0818140:CDS | 40.0% | |
| GTCACAATTCCTATCTAACC+GGG | + | chr5_3:53652940-53652959 | Msa0818140:CDS | 40.0% | |
| AGGTGTAAGGGTAATTGAGT+TGG | + | chr5_3:53653016-53653035 | Msa0818140:CDS | 40.0% | |
| !! | CTAGTATTTTCGGTGCAATC+TGG | + | chr5_3:53653193-53653212 | Msa0818140:intron | 40.0% |
| TGGAGTAAGATGGTCTTCTA+GGG | - | chr5_3:53653508-53653527 | None:intergenic | 40.0% | |
| ! | CTTGAAGATCTGGAGTAAGA+TGG | - | chr5_3:53653518-53653537 | None:intergenic | 40.0% |
| AAGAGGGTCTTGATCTCTTG+TGG | - | chr5_3:53651154-53651173 | None:intergenic | 45.0% | |
| ATGTCATATCATGGTGCACC+TGG | - | chr5_3:53652890-53652909 | None:intergenic | 45.0% | |
| !! | GGGTAATTGAGTTGGACTTG+TGG | + | chr5_3:53653024-53653043 | Msa0818140:CDS | 45.0% |
| ! | TAGGACATTGACTACTCCTG+TGG | + | chr5_3:53653413-53653432 | Msa0818140:intron | 45.0% |
| AAGCATCTAATGAGCTCCAC+AGG | - | chr5_3:53653432-53653451 | None:intergenic | 45.0% | |
| TGGAGCTCATTAGATGCTTG+AGG | + | chr5_3:53653433-53653452 | Msa0818140:CDS | 45.0% | |
| CTGGAGTAAGATGGTCTTCT+AGG | - | chr5_3:53653509-53653528 | None:intergenic | 45.0% | |
| TCCAGATCTTCAAGCCAAAG+TGG | + | chr5_3:53653524-53653543 | Msa0818140:CDS | 45.0% | |
| TTAACTAACCTCGGCCACTT+TGG | - | chr5_3:53653541-53653560 | None:intergenic | 45.0% | |
| ! | CATTTCCATAGAAGGGGTGC+TGG | + | chr5_3:53651295-53651314 | Msa0818140:CDS | 50.0% |
| TAAGTCCAGCACCCCTTCTA+TGG | - | chr5_3:53651303-53651322 | None:intergenic | 50.0% | |
| TGTGGCTGCAATTGTGGTTG+TGG | - | chr5_3:53652447-53652466 | None:intergenic | 50.0% | |
| ! | CAGCTGATTCCCGGTTAGAT+AGG | - | chr5_3:53652952-53652971 | None:intergenic | 50.0% |
| CTCTGCAACGCTTTCACGAT+TGG | - | chr5_3:53652996-53653015 | None:intergenic | 50.0% | |
| !! | ATCGTGAAAGCGTTGCAGAG+AGG | + | chr5_3:53652996-53653015 | Msa0818140:CDS | 50.0% |
| ! | AAGCGTTGCAGAGAGGTGTA+AGG | + | chr5_3:53653003-53653022 | Msa0818140:CDS | 50.0% |
| ! | AGCGTTGCAGAGAGGTGTAA+GGG | + | chr5_3:53653004-53653023 | Msa0818140:CDS | 50.0% |
| CTTGTGGCCTAATGCATCCA+AGG | + | chr5_3:53653040-53653059 | Msa0818140:CDS | 50.0% | |
| CTTCGTCGCGTCAGAATTTC+CGG | + | chr5_3:53653473-53653492 | Msa0818140:CDS | 50.0% | |
| !! | GCCACTTTGGCTTGAAGATC+TGG | - | chr5_3:53653528-53653547 | None:intergenic | 50.0% |
| CGGAAATTCTGACGCGACGA+AGG | - | chr5_3:53653475-53653494 | None:intergenic | 55.0% | |
| TCTTCAAGCCAAAGTGGCCG+AGG | + | chr5_3:53653530-53653549 | Msa0818140:CDS | 55.0% | |
| ! | GTCGCTGCTCAGCTGATTCC+CGG | - | chr5_3:53652961-53652980 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 53651082 | 53653560 | 53651082 | ID=Msa0818140;Name=Msa0818140 |
| chr5_3 | mRNA | 53651082 | 53653560 | 53651082 | ID=Msa0818140-mRNA-1;Parent=Msa0818140;Name=Msa0818140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|215 |
| chr5_3 | exon | 53651082 | 53651387 | 53651082 | ID=Msa0818140-mRNA-1:exon:16184;Parent=Msa0818140-mRNA-1 |
| chr5_3 | exon | 53652891 | 53653087 | 53652891 | ID=Msa0818140-mRNA-1:exon:16185;Parent=Msa0818140-mRNA-1 |
| chr5_3 | exon | 53653416 | 53653560 | 53653416 | ID=Msa0818140-mRNA-1:exon:16186;Parent=Msa0818140-mRNA-1 |
| chr5_3 | CDS | 53651082 | 53651387 | 53651082 | ID=Msa0818140-mRNA-1:cds;Parent=Msa0818140-mRNA-1 |
| chr5_3 | CDS | 53652891 | 53653087 | 53652891 | ID=Msa0818140-mRNA-1:cds;Parent=Msa0818140-mRNA-1 |
| chr5_3 | CDS | 53653416 | 53653560 | 53653416 | ID=Msa0818140-mRNA-1:cds;Parent=Msa0818140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
