AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130570 MtrunA17_Chr7g0275771 92.549 255 18 1 1 255 1 254 9.25e-164 477
Msa1130570 MtrunA17_Chr1g0147021 35.926 270 132 8 8 250 726 981 2.97e-40 148
Msa1130570 MtrunA17_Chr1g0211711 46.825 126 61 2 137 257 339 463 8.15e-29 114
Msa1130570 MtrunA17_Chr1g0211691 47.009 117 58 1 137 249 338 454 5.43e-28 112
Msa1130570 MtrunA17_Chr1g0211661 35.784 204 115 4 56 255 152 343 3.87e-27 110
Msa1130570 MtrunA17_Chr5g0426961 34.536 194 102 4 67 255 86 259 7.05e-26 106
Msa1130570 MtrunA17_Chr1g0192011 38.068 176 101 6 78 247 201 374 2.38e-25 104
Msa1130570 MtrunA17_Chr4g0075261 41.284 109 61 2 141 247 168 275 2.94e-21 92.8
Msa1130570 MtrunA17_Chr8g0364411 39.640 111 63 2 141 247 33 143 1.03e-19 83.2
Msa1130570 MtrunA17_Chr4g0048531 37.600 125 67 4 141 255 260 383 5.05e-16 77.4
Msa1130570 MtrunA17_Chr1g0183311 38.854 157 81 5 98 247 106 254 9.97e-15 73.6
Msa1130570 MtrunA17_Chr2g0281051 32.787 122 72 4 141 255 207 325 5.23e-13 68.6
Msa1130570 MtrunA17_Chr2g0289041 39.773 88 51 1 163 248 2 89 6.39e-13 65.9
Msa1130570 MtrunA17_Chr2g0289121 41.284 109 61 2 141 247 156 263 8.57e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130570 AT4G00990.1 48.649 111 53 3 141 248 80 189 9.17e-27 109
Msa1130570 AT4G00990.3 48.649 111 53 3 141 248 80 189 1.14e-26 108
Msa1130570 AT4G00990.2 48.649 111 53 3 141 248 80 189 1.19e-26 108
Msa1130570 AT1G09060.4 44.348 115 60 2 136 246 213 327 5.31e-23 98.2
Msa1130570 AT1G09060.3 44.348 115 60 2 136 246 213 327 5.31e-23 98.2
Msa1130570 AT1G09060.2 44.348 115 60 2 136 246 199 313 5.60e-23 98.2
Msa1130570 AT1G09060.1 44.348 115 60 2 136 246 199 313 5.60e-23 98.2
Msa1130570 AT1G11950.1 32.031 128 85 1 130 255 182 309 1.01e-19 88.6
Msa1130570 AT1G11950.3 32.031 128 85 1 130 255 182 309 1.01e-19 88.6
Msa1130570 AT1G11950.2 32.031 128 85 1 130 255 182 309 1.04e-19 88.6
Msa1130570 AT3G07610.1 41.228 114 58 3 140 247 154 264 1.51e-19 88.2
Msa1130570 AT3G07610.3 41.228 114 58 3 140 247 154 264 2.00e-19 87.8
Msa1130570 AT3G07610.2 41.964 112 60 2 140 247 154 264 4.43e-19 86.7
Msa1130570 AT1G62310.1 30.496 141 95 2 111 249 180 319 6.02e-18 83.6

Find 72 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAACTTTCACCCTTCT+TGG 0.166875 7_3:+82725481 None:intergenic
CATCACGTTACCCCTTATTT+TGG 0.198489 7_3:+82724931 None:intergenic
TGAAAAGTGTGTTATCTTTC+CGG 0.211919 7_3:+82726752 None:intergenic
TAGGAGAAGGAAGGTGATTT+TGG 0.233228 7_3:-82726253 Msa1130570:CDS
GCACGCTTCGCCACCGCTTT+AGG 0.248072 7_3:+82726539 None:intergenic
TAGAGATTGAAACCAAAATA+AGG 0.287207 7_3:-82724943 Msa1130570:CDS
GAAAAGTGTGTTATCTTTCC+GGG 0.363566 7_3:+82726753 None:intergenic
TTCTCTTCTCACCCGTAGTT+TGG 0.380702 7_3:+82725761 None:intergenic
AGAGATTGAAACCAAAATAA+GGG 0.383019 7_3:-82724942 Msa1130570:CDS
CTAGTTCCAAGCTCTGTTCC+CGG 0.395888 7_3:+82724963 None:intergenic
CTCATTCAGATGACGAATCT+AGG 0.402978 7_3:+82726847 None:intergenic
TGACACTGGCGTCTATTTCT+CGG 0.405325 7_3:+82725044 None:intergenic
GGGACTAATGGATGTGTATA+AGG 0.420271 7_3:-82726227 Msa1130570:CDS
TAACTGCAAAGCTTGCTTAC+GGG 0.421761 7_3:-82725182 Msa1130570:CDS
CACGTTCTCAAATTCCTCTC+GGG 0.423212 7_3:+82725228 None:intergenic
GTTACGAATGCATTGAGAAC+TGG 0.440992 7_3:-82725388 Msa1130570:intron
CATGTACTAACTTGATGAAT+CGG 0.446841 7_3:+82726347 None:intergenic
GGAATCTGATGATGGAGAAT+AGG 0.458413 7_3:+82726608 None:intergenic
CGGTGGATATGCCTCAGAAC+TGG 0.464151 7_3:+82724983 None:intergenic
TTTCTTCTTCTTCTTTCTCG+TGG 0.466094 7_3:+82726370 None:intergenic
AATTGAAGATACCAAACAAC+TGG 0.474075 7_3:-82726185 Msa1130570:intron
TATCCACCGGGAACAGAGCT+TGG 0.485075 7_3:-82724969 Msa1130570:CDS
GCGGTTCTCTCCGGCGACGT+TGG 0.488082 7_3:+82726517 None:intergenic
AGAGAAATAATAAGAAGTAT+TGG 0.491716 7_3:-82726883 Msa1130570:five_prime_UTR
GTAACTGCAAAGCTTGCTTA+CGG 0.492778 7_3:-82725183 Msa1130570:CDS
GCGAAGCGTGCCAACGTCGC+CGG 0.497824 7_3:-82726527 Msa1130570:CDS
ACACGTTCTCAAATTCCTCT+CGG 0.497938 7_3:+82725227 None:intergenic
AAATAAATAATTCAATTCAC+TGG 0.506387 7_3:-82726647 Msa1130570:five_prime_UTR
AAGATGCAGAGTCTAACAAT+AGG 0.506744 7_3:-82726457 Msa1130570:CDS
ACGGGAGTTTCCTGTGCTGA+TGG 0.512922 7_3:-82725164 Msa1130570:intron
GGATATGCCTCAGAACTGGC+AGG 0.514718 7_3:+82724987 None:intergenic
AGATCGGAGTCGGAGCTGAA+TGG 0.523502 7_3:-82726398 Msa1130570:CDS
TTTGTGCTTTGATCATGTCT+CGG 0.524269 7_3:+82726818 None:intergenic
CAGTTCTGAGGCATATCCAC+CGG 0.547208 7_3:-82724982 Msa1130570:CDS
CTCCGATCTGTTACAGAGAT+CGG 0.548830 7_3:+82726412 None:intergenic
TCCGGGGAGAGATGAATGTA+TGG 0.550714 7_3:+82726770 None:intergenic
TTCAATTTGTAGGAGAAGGA+AGG 0.557963 7_3:-82726262 Msa1130570:intron
CACCACTCTTATCATTCCGC+TGG 0.561657 7_3:+82725447 None:intergenic
CAGAGTCTAACAATAGGAAG+AGG 0.562689 7_3:-82726451 Msa1130570:CDS
TGCAATGAGGAATCTGATGA+TGG 0.570783 7_3:+82726600 None:intergenic
GATTCTTAAGCCGCGGCATG+CGG 0.572116 7_3:+82726498 None:intergenic
TTGCACATATTCCGATCAGA+TGG 0.572786 7_3:-82726582 Msa1130570:exon
CCGGAGAGAACCGCATGCCG+CGG 0.574356 7_3:-82726508 Msa1130570:CDS
TCCATACATTCATCTCTCCC+CGG 0.577706 7_3:-82726771 Msa1130570:five_prime_UTR
TTGGATTTGCAGGAAAAGGA+AGG 0.578185 7_3:-82725828 Msa1130570:intron
TTACAATTACCCAGACAAAA+CGG 0.582664 7_3:+82725202 None:intergenic
ATGACATCTACCATCAGCAC+AGG 0.592506 7_3:+82725154 None:intergenic
CACCGATCTCTGTAACAGAT+CGG 0.592544 7_3:-82726414 Msa1130570:CDS
GAGTCGAAGATACCAAACTA+CGG 0.598607 7_3:-82725773 Msa1130570:CDS
GCTTCGCCACCGCTTTAGGA+CGG 0.604737 7_3:+82726543 None:intergenic
GAGATTGAAACCAAAATAAG+GGG 0.605718 7_3:-82724941 Msa1130570:CDS
TTCCGTCGACCGTCCTAAAG+CGG 0.608497 7_3:-82726552 Msa1130570:CDS
TTGAATTGATTCTTAAGCCG+CGG 0.610947 7_3:+82726491 None:intergenic
TATGATGATGCAGCGTGCGT+GGG 0.611031 7_3:+82726794 None:intergenic
CTAAAGCCCTGCCAGTTCTG+AGG 0.614494 7_3:-82724994 Msa1130570:CDS
AGTCGAAGATACCAAACTAC+GGG 0.619899 7_3:-82725772 Msa1130570:intron
AAAGGAAGGTAGCTGTAACA+AGG 0.620730 7_3:-82725814 Msa1130570:CDS
TCTCTGTAACAGATCGGAGT+CGG 0.622689 7_3:-82726408 Msa1130570:CDS
TGAATTATATTTATAGTACG+TGG 0.623109 7_3:+82726715 None:intergenic
CACCGCTTTAGGACGGTCGA+CGG 0.628927 7_3:+82726550 None:intergenic
GGAAGAAGAGTCCATCTGAT+CGG 0.632670 7_3:+82726571 None:intergenic
AGTTCTGAGGCATATCCACC+GGG 0.638449 7_3:-82724981 Msa1130570:CDS
AAAAGTGTGTTATCTTTCCG+GGG 0.641011 7_3:+82726754 None:intergenic
GATATGCCTCAGAACTGGCA+GGG 0.647810 7_3:+82724988 None:intergenic
CAGCCGCTGTAATTTGACAC+TGG 0.648961 7_3:+82725030 None:intergenic
TGATGTGTCATCAGTGCCAG+CGG 0.652912 7_3:-82725463 Msa1130570:CDS
ATATGATGATGCAGCGTGCG+TGG 0.665872 7_3:+82726793 None:intergenic
TTGACATTAATCAGGTACCC+AGG 0.674787 7_3:-82725256 Msa1130570:intron
GTTCCAAGCTCTGTTCCCGG+TGG 0.675496 7_3:+82724966 None:intergenic
TGATCGGAATATGTGCAATG+AGG 0.682294 7_3:+82726587 None:intergenic
TGCCAGCGGAATGATAAGAG+TGG 0.697971 7_3:-82725449 Msa1130570:CDS
ACGCCAGTGTCAAATTACAG+CGG 0.742800 7_3:-82725033 Msa1130570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAATTCAATTCAC+TGG - chr7_3:82725186-82725205 Msa1130570:CDS 15.0%
!! AATAATTCAATTCAATTTGT+AGG - chr7_3:82725561-82725580 Msa1130570:intron 15.0%
!!! ATAAACATTCATAAATCTTT+TGG - chr7_3:82725760-82725779 Msa1130570:intron 15.0%
!!! ATTAATTGTAGTTTTATTTG+AGG - chr7_3:82725823-82725842 Msa1130570:intron 15.0%
!!! GATTTCAATATTTTAGAAAA+TGG - chr7_3:82726153-82726172 Msa1130570:intron 15.0%
!! TTAATATTGTTTAATTACGA+AGG - chr7_3:82726272-82726291 Msa1130570:intron 15.0%
!! AAATAAATAATTCAATTCAC+TGG - chr7_3:82725186-82725205 Msa1130570:CDS 15.0%
!! AATAATTCAATTCAATTTGT+AGG - chr7_3:82725561-82725580 Msa1130570:intron 15.0%
!!! ATAAACATTCATAAATCTTT+TGG - chr7_3:82725760-82725779 Msa1130570:intron 15.0%
!!! ATTAATTGTAGTTTTATTTG+AGG - chr7_3:82725823-82725842 Msa1130570:intron 15.0%
!!! GATTTCAATATTTTAGAAAA+TGG - chr7_3:82726153-82726172 Msa1130570:intron 15.0%
!! TTAATATTGTTTAATTACGA+AGG - chr7_3:82726272-82726291 Msa1130570:intron 15.0%
!!! AGAGAAATAATAAGAAGTAT+TGG - chr7_3:82724950-82724969 Msa1130570:CDS 20.0%
!! TGAATTATATTTATAGTACG+TGG + chr7_3:82725121-82725140 None:intergenic 20.0%
!!! ATGGACATTTATAAATCTTT+TGG - chr7_3:82726172-82726191 Msa1130570:intron 20.0%
!!! TGGACATTTATAAATCTTTT+GGG - chr7_3:82726173-82726192 Msa1130570:intron 20.0%
!! AACATTATGGTAATAATCAA+AGG + chr7_3:82726306-82726325 None:intergenic 20.0%
!!! AACTTTCTTTTCTTTAAGAA+TGG - chr7_3:82726470-82726489 Msa1130570:CDS 20.0%
!!! AGAGAAATAATAAGAAGTAT+TGG - chr7_3:82724950-82724969 Msa1130570:CDS 20.0%
!! TGAATTATATTTATAGTACG+TGG + chr7_3:82725121-82725140 None:intergenic 20.0%
!!! ATGGACATTTATAAATCTTT+TGG - chr7_3:82726172-82726191 Msa1130570:intron 20.0%
!!! TGGACATTTATAAATCTTTT+GGG - chr7_3:82726173-82726192 Msa1130570:intron 20.0%
!! AACATTATGGTAATAATCAA+AGG + chr7_3:82726306-82726325 None:intergenic 20.0%
!!! AACTTTCTTTTCTTTAAGAA+TGG - chr7_3:82726470-82726489 Msa1130570:CDS 20.0%
! CAATTGAATTATTGTGTGTT+CGG + chr7_3:82725988-82726007 None:intergenic 25.0%
! AATAATTCAATTGGATTTGC+AGG - chr7_3:82725995-82726014 Msa1130570:intron 25.0%
! AAGGTTAACAAAGCTAAAAA+TGG - chr7_3:82726038-82726057 Msa1130570:intron 25.0%
!!! CATATAAAGTTGTTGATGAT+TGG - chr7_3:82726124-82726143 Msa1130570:intron 25.0%
! TAGAGATTGAAACCAAAATA+AGG - chr7_3:82726890-82726909 Msa1130570:five_prime_UTR 25.0%
! AGAGATTGAAACCAAAATAA+GGG - chr7_3:82726891-82726910 Msa1130570:five_prime_UTR 25.0%
! AAACATGTGCATAGAAATTT+AGG - chr7_3:82726927-82726946 Msa1130570:five_prime_UTR 25.0%
! CAATTGAATTATTGTGTGTT+CGG + chr7_3:82725988-82726007 None:intergenic 25.0%
! AATAATTCAATTGGATTTGC+AGG - chr7_3:82725995-82726014 Msa1130570:intron 25.0%
! AAGGTTAACAAAGCTAAAAA+TGG - chr7_3:82726038-82726057 Msa1130570:intron 25.0%
!!! CATATAAAGTTGTTGATGAT+TGG - chr7_3:82726124-82726143 Msa1130570:intron 25.0%
! TAGAGATTGAAACCAAAATA+AGG - chr7_3:82726890-82726909 Msa1130570:five_prime_UTR 25.0%
! AGAGATTGAAACCAAAATAA+GGG - chr7_3:82726891-82726910 Msa1130570:five_prime_UTR 25.0%
TTTCCACAAAAGAGAAAAAG+TGG - chr7_3:82724926-82724945 Msa1130570:CDS 30.0%
! TGAAAAGTGTGTTATCTTTC+CGG + chr7_3:82725084-82725103 None:intergenic 30.0%
CATGTACTAACTTGATGAAT+CGG + chr7_3:82725489-82725508 None:intergenic 30.0%
TCAATTCAATTTGTAGGAGA+AGG - chr7_3:82725567-82725586 Msa1130570:intron 30.0%
! GGTATCTTCAATTCCATTTT+TGG + chr7_3:82725641-82725660 None:intergenic 30.0%
AATTGAAGATACCAAACAAC+TGG - chr7_3:82725648-82725667 Msa1130570:intron 30.0%
CGAACACACAATAATTCAAT+TGG - chr7_3:82725986-82726005 Msa1130570:intron 30.0%
! GTATTGTGTATCGATGTATT+CGG - chr7_3:82726216-82726235 Msa1130570:CDS 30.0%
GGTATTATTCACATGTATGT+TGG - chr7_3:82726237-82726256 Msa1130570:CDS 30.0%
!!! TACCATAATGTTGTTTTCTC+AGG - chr7_3:82726314-82726333 Msa1130570:intron 30.0%
!!! ACCATAATGTTGTTTTCTCA+GGG - chr7_3:82726315-82726334 Msa1130570:intron 30.0%
TATATCCAAAAAAGCCAAGA+AGG - chr7_3:82726338-82726357 Msa1130570:intron 30.0%
ATATCCAAAAAAGCCAAGAA+GGG - chr7_3:82726339-82726358 Msa1130570:intron 30.0%
TTACAATTACCCAGACAAAA+CGG + chr7_3:82726634-82726653 None:intergenic 30.0%
!!! ACTCTTTTCCTTGTTTTCAT+AGG - chr7_3:82726765-82726784 Msa1130570:five_prime_UTR 30.0%
GAGATTGAAACCAAAATAAG+GGG - chr7_3:82726892-82726911 Msa1130570:five_prime_UTR 30.0%
TTTCCACAAAAGAGAAAAAG+TGG - chr7_3:82724926-82724945 Msa1130570:CDS 30.0%
! TGAAAAGTGTGTTATCTTTC+CGG + chr7_3:82725084-82725103 None:intergenic 30.0%
CATGTACTAACTTGATGAAT+CGG + chr7_3:82725489-82725508 None:intergenic 30.0%
TCAATTCAATTTGTAGGAGA+AGG - chr7_3:82725567-82725586 Msa1130570:intron 30.0%
! GGTATCTTCAATTCCATTTT+TGG + chr7_3:82725641-82725660 None:intergenic 30.0%
AATTGAAGATACCAAACAAC+TGG - chr7_3:82725648-82725667 Msa1130570:intron 30.0%
CGAACACACAATAATTCAAT+TGG - chr7_3:82725986-82726005 Msa1130570:intron 30.0%
! GTATTGTGTATCGATGTATT+CGG - chr7_3:82726216-82726235 Msa1130570:CDS 30.0%
GGTATTATTCACATGTATGT+TGG - chr7_3:82726237-82726256 Msa1130570:CDS 30.0%
!!! TACCATAATGTTGTTTTCTC+AGG - chr7_3:82726314-82726333 Msa1130570:intron 30.0%
!!! ACCATAATGTTGTTTTCTCA+GGG - chr7_3:82726315-82726334 Msa1130570:intron 30.0%
TATATCCAAAAAAGCCAAGA+AGG - chr7_3:82726338-82726357 Msa1130570:intron 30.0%
ATATCCAAAAAAGCCAAGAA+GGG - chr7_3:82726339-82726358 Msa1130570:intron 30.0%
TTACAATTACCCAGACAAAA+CGG + chr7_3:82726634-82726653 None:intergenic 30.0%
!!! ACTCTTTTCCTTGTTTTCAT+AGG - chr7_3:82726765-82726784 Msa1130570:five_prime_UTR 30.0%
GAGATTGAAACCAAAATAAG+GGG - chr7_3:82726892-82726911 Msa1130570:five_prime_UTR 30.0%
! TTTTCTCTTTTGTGGAAACG+TGG + chr7_3:82724924-82724943 None:intergenic 35.0%
!!! CTACCACTTTTTCTCTTTTG+TGG + chr7_3:82724932-82724951 None:intergenic 35.0%
TTTGTGCTTTGATCATGTCT+CGG + chr7_3:82725018-82725037 None:intergenic 35.0%
! AAAAGTGTGTTATCTTTCCG+GGG + chr7_3:82725082-82725101 None:intergenic 35.0%
! GAAAAGTGTGTTATCTTTCC+GGG + chr7_3:82725083-82725102 None:intergenic 35.0%
! TTGAATTGATTCTTAAGCCG+CGG + chr7_3:82725345-82725364 None:intergenic 35.0%
AAGATGCAGAGTCTAACAAT+AGG - chr7_3:82725376-82725395 Msa1130570:intron 35.0%
TTTCTTCTTCTTCTTTCTCG+TGG + chr7_3:82725466-82725485 None:intergenic 35.0%
TTCAATTTGTAGGAGAAGGA+AGG - chr7_3:82725571-82725590 Msa1130570:intron 35.0%
AAGGTCAACAAAGCCAAAAA+TGG - chr7_3:82725625-82725644 Msa1130570:intron 35.0%
! TTTTCTTCTCACCAGTTGTT+TGG + chr7_3:82725662-82725681 None:intergenic 35.0%
!! CACACGTTTATTCTGAAACA+AGG + chr7_3:82725794-82725813 None:intergenic 35.0%
GTTTCAGAATAAACGTGTGT+TGG - chr7_3:82725795-82725814 Msa1130570:CDS 35.0%
TCAATTGGATTTGCAGGAAA+AGG - chr7_3:82726001-82726020 Msa1130570:intron 35.0%
!! CAAGAGATGACACTGATTTA+TGG + chr7_3:82726103-82726122 None:intergenic 35.0%
ACCCTGAGAAAACAACATTA+TGG + chr7_3:82726319-82726338 None:intergenic 35.0%
CCAGTATTGTGGATCAATAA+GGG + chr7_3:82726540-82726559 None:intergenic 35.0%
CACTGTGATTGACATTAATC+AGG - chr7_3:82726569-82726588 Msa1130570:exon 35.0%
! TTTTCTCTTTTGTGGAAACG+TGG + chr7_3:82724924-82724943 None:intergenic 35.0%
!!! CTACCACTTTTTCTCTTTTG+TGG + chr7_3:82724932-82724951 None:intergenic 35.0%
TTTGTGCTTTGATCATGTCT+CGG + chr7_3:82725018-82725037 None:intergenic 35.0%
! AAAAGTGTGTTATCTTTCCG+GGG + chr7_3:82725082-82725101 None:intergenic 35.0%
! GAAAAGTGTGTTATCTTTCC+GGG + chr7_3:82725083-82725102 None:intergenic 35.0%
! TTGAATTGATTCTTAAGCCG+CGG + chr7_3:82725345-82725364 None:intergenic 35.0%
AAGATGCAGAGTCTAACAAT+AGG - chr7_3:82725376-82725395 Msa1130570:intron 35.0%
TTTCTTCTTCTTCTTTCTCG+TGG + chr7_3:82725466-82725485 None:intergenic 35.0%
TTCAATTTGTAGGAGAAGGA+AGG - chr7_3:82725571-82725590 Msa1130570:intron 35.0%
AAGGTCAACAAAGCCAAAAA+TGG - chr7_3:82725625-82725644 Msa1130570:intron 35.0%
! TTTTCTTCTCACCAGTTGTT+TGG + chr7_3:82725662-82725681 None:intergenic 35.0%
!! CACACGTTTATTCTGAAACA+AGG + chr7_3:82725794-82725813 None:intergenic 35.0%
GTTTCAGAATAAACGTGTGT+TGG - chr7_3:82725795-82725814 Msa1130570:CDS 35.0%
TCAATTGGATTTGCAGGAAA+AGG - chr7_3:82726001-82726020 Msa1130570:intron 35.0%
!! CAAGAGATGACACTGATTTA+TGG + chr7_3:82726103-82726122 None:intergenic 35.0%
ACCCTGAGAAAACAACATTA+TGG + chr7_3:82726319-82726338 None:intergenic 35.0%
CCAGTATTGTGGATCAATAA+GGG + chr7_3:82726540-82726559 None:intergenic 35.0%
CACTGTGATTGACATTAATC+AGG - chr7_3:82726569-82726588 Msa1130570:exon 35.0%
CTCATTCAGATGACGAATCT+AGG + chr7_3:82724989-82725008 None:intergenic 40.0%
!! GGAATCTGATGATGGAGAAT+AGG + chr7_3:82725228-82725247 None:intergenic 40.0%
TGCAATGAGGAATCTGATGA+TGG + chr7_3:82725236-82725255 None:intergenic 40.0%
TGATCGGAATATGTGCAATG+AGG + chr7_3:82725249-82725268 None:intergenic 40.0%
TTGCACATATTCCGATCAGA+TGG - chr7_3:82725251-82725270 Msa1130570:intron 40.0%
CAGAGTCTAACAATAGGAAG+AGG - chr7_3:82725382-82725401 Msa1130570:intron 40.0%
! TAGGAGAAGGAAGGTGATTT+TGG - chr7_3:82725580-82725599 Msa1130570:intron 40.0%
!! AAGGAAGGTGATTTTGGCAA+GGG - chr7_3:82725586-82725605 Msa1130570:intron 40.0%
!! TGATTTTGGCAAGGGACTAA+TGG - chr7_3:82725594-82725613 Msa1130570:intron 40.0%
! GGGACTAATGGATGTGTATA+AGG - chr7_3:82725606-82725625 Msa1130570:intron 40.0%
TTGGATTTGCAGGAAAAGGA+AGG - chr7_3:82726005-82726024 Msa1130570:intron 40.0%
AAAGGAAGGTAGCTGTAACA+AGG - chr7_3:82726019-82726038 Msa1130570:intron 40.0%
GAGTCGAAGATACCAAACTA+CGG - chr7_3:82726060-82726079 Msa1130570:intron 40.0%
AGTCGAAGATACCAAACTAC+GGG - chr7_3:82726061-82726080 Msa1130570:intron 40.0%
!!! TTCACCCTTCTTGGCTTTTT+TGG + chr7_3:82726346-82726365 None:intergenic 40.0%
CATCAAACTTTCACCCTTCT+TGG + chr7_3:82726355-82726374 None:intergenic 40.0%
GTTACGAATGCATTGAGAAC+TGG - chr7_3:82726445-82726464 Msa1130570:CDS 40.0%
GTTGTCTTGAAGAAACCAGT+TGG - chr7_3:82726511-82726530 Msa1130570:CDS 40.0%
GATCAATAAGGGAAACCAAC+TGG + chr7_3:82726529-82726548 None:intergenic 40.0%
CCCTTATTGATCCACAATAC+TGG - chr7_3:82726537-82726556 Msa1130570:CDS 40.0%
GCCAGTATTGTGGATCAATA+AGG + chr7_3:82726541-82726560 None:intergenic 40.0%
TATTGATCCACAATACTGGC+TGG - chr7_3:82726541-82726560 Msa1130570:CDS 40.0%
TTGACATTAATCAGGTACCC+AGG - chr7_3:82726577-82726596 Msa1130570:exon 40.0%
ACACGTTCTCAAATTCCTCT+CGG + chr7_3:82726609-82726628 None:intergenic 40.0%
! GTAACTGCAAAGCTTGCTTA+CGG - chr7_3:82726650-82726669 Msa1130570:five_prime_UTR 40.0%
! TAACTGCAAAGCTTGCTTAC+GGG - chr7_3:82726651-82726670 Msa1130570:five_prime_UTR 40.0%
TTCTCGGTCCTATGAAAACA+AGG + chr7_3:82726776-82726795 None:intergenic 40.0%
!! CATCACGTTACCCCTTATTT+TGG + chr7_3:82726905-82726924 None:intergenic 40.0%
CTCATTCAGATGACGAATCT+AGG + chr7_3:82724989-82725008 None:intergenic 40.0%
!! GGAATCTGATGATGGAGAAT+AGG + chr7_3:82725228-82725247 None:intergenic 40.0%
TGCAATGAGGAATCTGATGA+TGG + chr7_3:82725236-82725255 None:intergenic 40.0%
TGATCGGAATATGTGCAATG+AGG + chr7_3:82725249-82725268 None:intergenic 40.0%
TTGCACATATTCCGATCAGA+TGG - chr7_3:82725251-82725270 Msa1130570:intron 40.0%
CAGAGTCTAACAATAGGAAG+AGG - chr7_3:82725382-82725401 Msa1130570:intron 40.0%
! TAGGAGAAGGAAGGTGATTT+TGG - chr7_3:82725580-82725599 Msa1130570:intron 40.0%
!! AAGGAAGGTGATTTTGGCAA+GGG - chr7_3:82725586-82725605 Msa1130570:intron 40.0%
!! TGATTTTGGCAAGGGACTAA+TGG - chr7_3:82725594-82725613 Msa1130570:intron 40.0%
! GGGACTAATGGATGTGTATA+AGG - chr7_3:82725606-82725625 Msa1130570:intron 40.0%
TTGGATTTGCAGGAAAAGGA+AGG - chr7_3:82726005-82726024 Msa1130570:intron 40.0%
AAAGGAAGGTAGCTGTAACA+AGG - chr7_3:82726019-82726038 Msa1130570:intron 40.0%
GAGTCGAAGATACCAAACTA+CGG - chr7_3:82726060-82726079 Msa1130570:intron 40.0%
AGTCGAAGATACCAAACTAC+GGG - chr7_3:82726061-82726080 Msa1130570:intron 40.0%
!!! TTCACCCTTCTTGGCTTTTT+TGG + chr7_3:82726346-82726365 None:intergenic 40.0%
CATCAAACTTTCACCCTTCT+TGG + chr7_3:82726355-82726374 None:intergenic 40.0%
GTTACGAATGCATTGAGAAC+TGG - chr7_3:82726445-82726464 Msa1130570:CDS 40.0%
GTTGTCTTGAAGAAACCAGT+TGG - chr7_3:82726511-82726530 Msa1130570:CDS 40.0%
GATCAATAAGGGAAACCAAC+TGG + chr7_3:82726529-82726548 None:intergenic 40.0%
CCCTTATTGATCCACAATAC+TGG - chr7_3:82726537-82726556 Msa1130570:CDS 40.0%
GCCAGTATTGTGGATCAATA+AGG + chr7_3:82726541-82726560 None:intergenic 40.0%
TATTGATCCACAATACTGGC+TGG - chr7_3:82726541-82726560 Msa1130570:CDS 40.0%
TTGACATTAATCAGGTACCC+AGG - chr7_3:82726577-82726596 Msa1130570:exon 40.0%
ACACGTTCTCAAATTCCTCT+CGG + chr7_3:82726609-82726628 None:intergenic 40.0%
! GTAACTGCAAAGCTTGCTTA+CGG - chr7_3:82726650-82726669 Msa1130570:five_prime_UTR 40.0%
! TAACTGCAAAGCTTGCTTAC+GGG - chr7_3:82726651-82726670 Msa1130570:five_prime_UTR 40.0%
TTCTCGGTCCTATGAAAACA+AGG + chr7_3:82726776-82726795 None:intergenic 40.0%
!! CATCACGTTACCCCTTATTT+TGG + chr7_3:82726905-82726924 None:intergenic 40.0%
TCCATACATTCATCTCTCCC+CGG - chr7_3:82725062-82725081 Msa1130570:intron 45.0%
GGAAGAAGAGTCCATCTGAT+CGG + chr7_3:82725265-82725284 None:intergenic 45.0%
CACCGATCTCTGTAACAGAT+CGG - chr7_3:82725419-82725438 Msa1130570:CDS 45.0%
CTCCGATCTGTTACAGAGAT+CGG + chr7_3:82725424-82725443 None:intergenic 45.0%
TCTCTGTAACAGATCGGAGT+CGG - chr7_3:82725425-82725444 Msa1130570:CDS 45.0%
!! GAAGGAAGGTGATTTTGGCA+AGG - chr7_3:82725585-82725604 Msa1130570:intron 45.0%
TTCTCTTCTCACCCGTAGTT+TGG + chr7_3:82726075-82726094 None:intergenic 45.0%
! ATTCCTCTCGGGTTTTTCCT+GGG + chr7_3:82726597-82726616 None:intergenic 45.0%
! AATTCCTCTCGGGTTTTTCC+TGG + chr7_3:82726598-82726617 None:intergenic 45.0%
CACGTTCTCAAATTCCTCTC+GGG + chr7_3:82726608-82726627 None:intergenic 45.0%
! AACGTGTGTCCGTTTTGTCT+GGG - chr7_3:82726622-82726641 Msa1130570:five_prime_UTR 45.0%
ATGACATCTACCATCAGCAC+AGG + chr7_3:82726682-82726701 None:intergenic 45.0%
! TGACACTGGCGTCTATTTCT+CGG + chr7_3:82726792-82726811 None:intergenic 45.0%
ACGCCAGTGTCAAATTACAG+CGG - chr7_3:82726800-82726819 Msa1130570:five_prime_UTR 45.0%
TCCATACATTCATCTCTCCC+CGG - chr7_3:82725062-82725081 Msa1130570:intron 45.0%
GGAAGAAGAGTCCATCTGAT+CGG + chr7_3:82725265-82725284 None:intergenic 45.0%
CACCGATCTCTGTAACAGAT+CGG - chr7_3:82725419-82725438 Msa1130570:CDS 45.0%
CTCCGATCTGTTACAGAGAT+CGG + chr7_3:82725424-82725443 None:intergenic 45.0%
TCTCTGTAACAGATCGGAGT+CGG - chr7_3:82725425-82725444 Msa1130570:CDS 45.0%
!! GAAGGAAGGTGATTTTGGCA+AGG - chr7_3:82725585-82725604 Msa1130570:intron 45.0%
TTCTCTTCTCACCCGTAGTT+TGG + chr7_3:82726075-82726094 None:intergenic 45.0%
! ATTCCTCTCGGGTTTTTCCT+GGG + chr7_3:82726597-82726616 None:intergenic 45.0%
! AATTCCTCTCGGGTTTTTCC+TGG + chr7_3:82726598-82726617 None:intergenic 45.0%
CACGTTCTCAAATTCCTCTC+GGG + chr7_3:82726608-82726627 None:intergenic 45.0%
! AACGTGTGTCCGTTTTGTCT+GGG - chr7_3:82726622-82726641 Msa1130570:five_prime_UTR 45.0%
ATGACATCTACCATCAGCAC+AGG + chr7_3:82726682-82726701 None:intergenic 45.0%
! TGACACTGGCGTCTATTTCT+CGG + chr7_3:82726792-82726811 None:intergenic 45.0%
ACGCCAGTGTCAAATTACAG+CGG - chr7_3:82726800-82726819 Msa1130570:five_prime_UTR 45.0%
!!! ATTTATTTTTATAATATGAT+TGG + chr7_3:82725174-82725193 None:intergenic 5.0%
!!! ATTTATTTTTATAATATGAT+TGG + chr7_3:82725174-82725193 None:intergenic 5.0%
! TATGATGATGCAGCGTGCGT+GGG + chr7_3:82725042-82725061 None:intergenic 50.0%
! ATATGATGATGCAGCGTGCG+TGG + chr7_3:82725043-82725062 None:intergenic 50.0%
TCCGGGGAGAGATGAATGTA+TGG + chr7_3:82725066-82725085 None:intergenic 50.0%
TGATGTGTCATCAGTGCCAG+CGG - chr7_3:82726370-82726389 Msa1130570:CDS 50.0%
TGCCAGCGGAATGATAAGAG+TGG - chr7_3:82726384-82726403 Msa1130570:CDS 50.0%
CACCACTCTTATCATTCCGC+TGG + chr7_3:82726389-82726408 None:intergenic 50.0%
TGAGTTGCCAGCCAGTATTG+TGG + chr7_3:82726551-82726570 None:intergenic 50.0%
! GAACGTGTGTCCGTTTTGTC+TGG - chr7_3:82726621-82726640 Msa1130570:five_prime_UTR 50.0%
CAGCCGCTGTAATTTGACAC+TGG + chr7_3:82726806-82726825 None:intergenic 50.0%
GATATGCCTCAGAACTGGCA+GGG + chr7_3:82726848-82726867 None:intergenic 50.0%
!! CAGTTCTGAGGCATATCCAC+CGG - chr7_3:82726851-82726870 Msa1130570:five_prime_UTR 50.0%
!! AGTTCTGAGGCATATCCACC+GGG - chr7_3:82726852-82726871 Msa1130570:five_prime_UTR 50.0%
CTAGTTCCAAGCTCTGTTCC+CGG + chr7_3:82726873-82726892 None:intergenic 50.0%
! TATGATGATGCAGCGTGCGT+GGG + chr7_3:82725042-82725061 None:intergenic 50.0%
! ATATGATGATGCAGCGTGCG+TGG + chr7_3:82725043-82725062 None:intergenic 50.0%
TCCGGGGAGAGATGAATGTA+TGG + chr7_3:82725066-82725085 None:intergenic 50.0%
TGATGTGTCATCAGTGCCAG+CGG - chr7_3:82726370-82726389 Msa1130570:CDS 50.0%
TGCCAGCGGAATGATAAGAG+TGG - chr7_3:82726384-82726403 Msa1130570:CDS 50.0%
CACCACTCTTATCATTCCGC+TGG + chr7_3:82726389-82726408 None:intergenic 50.0%
TGAGTTGCCAGCCAGTATTG+TGG + chr7_3:82726551-82726570 None:intergenic 50.0%
! GAACGTGTGTCCGTTTTGTC+TGG - chr7_3:82726621-82726640 Msa1130570:five_prime_UTR 50.0%
CAGCCGCTGTAATTTGACAC+TGG + chr7_3:82726806-82726825 None:intergenic 50.0%
GATATGCCTCAGAACTGGCA+GGG + chr7_3:82726848-82726867 None:intergenic 50.0%
!! CAGTTCTGAGGCATATCCAC+CGG - chr7_3:82726851-82726870 Msa1130570:five_prime_UTR 50.0%
!! AGTTCTGAGGCATATCCACC+GGG - chr7_3:82726852-82726871 Msa1130570:five_prime_UTR 50.0%
CTAGTTCCAAGCTCTGTTCC+CGG + chr7_3:82726873-82726892 None:intergenic 50.0%
TTCCGTCGACCGTCCTAAAG+CGG - chr7_3:82725281-82725300 Msa1130570:intron 55.0%
GATTCTTAAGCCGCGGCATG+CGG + chr7_3:82725338-82725357 None:intergenic 55.0%
AGATCGGAGTCGGAGCTGAA+TGG - chr7_3:82725435-82725454 Msa1130570:CDS 55.0%
GTACCCAGGAAAAACCCGAG+AGG - chr7_3:82726591-82726610 Msa1130570:five_prime_UTR 55.0%
ACGGGAGTTTCCTGTGCTGA+TGG - chr7_3:82726669-82726688 Msa1130570:five_prime_UTR 55.0%
CTAAAGCCCTGCCAGTTCTG+AGG - chr7_3:82726839-82726858 Msa1130570:five_prime_UTR 55.0%
GGATATGCCTCAGAACTGGC+AGG + chr7_3:82726849-82726868 None:intergenic 55.0%
CGGTGGATATGCCTCAGAAC+TGG + chr7_3:82726853-82726872 None:intergenic 55.0%
TATCCACCGGGAACAGAGCT+TGG - chr7_3:82726864-82726883 Msa1130570:five_prime_UTR 55.0%
TTCCGTCGACCGTCCTAAAG+CGG - chr7_3:82725281-82725300 Msa1130570:intron 55.0%
GATTCTTAAGCCGCGGCATG+CGG + chr7_3:82725338-82725357 None:intergenic 55.0%
AGATCGGAGTCGGAGCTGAA+TGG - chr7_3:82725435-82725454 Msa1130570:CDS 55.0%
GTACCCAGGAAAAACCCGAG+AGG - chr7_3:82726591-82726610 Msa1130570:five_prime_UTR 55.0%
ACGGGAGTTTCCTGTGCTGA+TGG - chr7_3:82726669-82726688 Msa1130570:five_prime_UTR 55.0%
CTAAAGCCCTGCCAGTTCTG+AGG - chr7_3:82726839-82726858 Msa1130570:five_prime_UTR 55.0%
GGATATGCCTCAGAACTGGC+AGG + chr7_3:82726849-82726868 None:intergenic 55.0%
CGGTGGATATGCCTCAGAAC+TGG + chr7_3:82726853-82726872 None:intergenic 55.0%
TATCCACCGGGAACAGAGCT+TGG - chr7_3:82726864-82726883 Msa1130570:five_prime_UTR 55.0%
!! CACCGCTTTAGGACGGTCGA+CGG + chr7_3:82725286-82725305 None:intergenic 60.0%
!! GCTTCGCCACCGCTTTAGGA+CGG + chr7_3:82725293-82725312 None:intergenic 60.0%
GTTCCAAGCTCTGTTCCCGG+TGG + chr7_3:82726870-82726889 None:intergenic 60.0%
!! CACCGCTTTAGGACGGTCGA+CGG + chr7_3:82725286-82725305 None:intergenic 60.0%
!! GCTTCGCCACCGCTTTAGGA+CGG + chr7_3:82725293-82725312 None:intergenic 60.0%
GTTCCAAGCTCTGTTCCCGG+TGG + chr7_3:82726870-82726889 None:intergenic 60.0%
CGTCGACCGTCCTAAAGCGG+TGG - chr7_3:82725284-82725303 Msa1130570:intron 65.0%
GCACGCTTCGCCACCGCTTT+AGG + chr7_3:82725297-82725316 None:intergenic 65.0%
CGTCGACCGTCCTAAAGCGG+TGG - chr7_3:82725284-82725303 Msa1130570:intron 65.0%
GCACGCTTCGCCACCGCTTT+AGG + chr7_3:82725297-82725316 None:intergenic 65.0%
GCGAAGCGTGCCAACGTCGC+CGG - chr7_3:82725306-82725325 Msa1130570:intron 70.0%
GCGGTTCTCTCCGGCGACGT+TGG + chr7_3:82725319-82725338 None:intergenic 70.0%
CCGCGGCATGCGGTTCTCTC+CGG + chr7_3:82725328-82725347 None:intergenic 70.0%
CCGGAGAGAACCGCATGCCG+CGG - chr7_3:82725325-82725344 Msa1130570:intron 70.0%
GCGAAGCGTGCCAACGTCGC+CGG - chr7_3:82725306-82725325 Msa1130570:intron 70.0%
GCGGTTCTCTCCGGCGACGT+TGG + chr7_3:82725319-82725338 None:intergenic 70.0%
CCGCGGCATGCGGTTCTCTC+CGG + chr7_3:82725328-82725347 None:intergenic 70.0%
CCGGAGAGAACCGCATGCCG+CGG - chr7_3:82725325-82725344 Msa1130570:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82724907 82726948 82724907 ID=Msa1130570;Name=Msa1130570
chr7_3 mRNA 82724907 82726948 82724907 ID=Msa1130570-mRNA-1;Parent=Msa1130570;Name=Msa1130570-mRNA-1;_AED=0.46;_eAED=0.46;_QI=363|1|0.83|1|1|1|6|0|257
chr7_3 exon 82724907 82725068 82724907 ID=Msa1130570-mRNA-1:exon:24497;Parent=Msa1130570-mRNA-1
chr7_3 exon 82725165 82725264 82725165 ID=Msa1130570-mRNA-1:exon:24496;Parent=Msa1130570-mRNA-1
chr7_3 exon 82725389 82725519 82725389 ID=Msa1130570-mRNA-1:exon:24495;Parent=Msa1130570-mRNA-1
chr7_3 exon 82725773 82725838 82725773 ID=Msa1130570-mRNA-1:exon:24494;Parent=Msa1130570-mRNA-1
chr7_3 exon 82726186 82726272 82726186 ID=Msa1130570-mRNA-1:exon:24493;Parent=Msa1130570-mRNA-1
chr7_3 exon 82726358 82726948 82726358 ID=Msa1130570-mRNA-1:exon:24492;Parent=Msa1130570-mRNA-1
chr7_3 five_prime_UTR 82726586 82726948 82726586 ID=Msa1130570-mRNA-1:five_prime_utr;Parent=Msa1130570-mRNA-1
chr7_3 CDS 82726358 82726585 82726358 ID=Msa1130570-mRNA-1:cds;Parent=Msa1130570-mRNA-1
chr7_3 CDS 82726186 82726272 82726186 ID=Msa1130570-mRNA-1:cds;Parent=Msa1130570-mRNA-1
chr7_3 CDS 82725773 82725838 82725773 ID=Msa1130570-mRNA-1:cds;Parent=Msa1130570-mRNA-1
chr7_3 CDS 82725389 82725519 82725389 ID=Msa1130570-mRNA-1:cds;Parent=Msa1130570-mRNA-1
chr7_3 CDS 82725165 82725264 82725165 ID=Msa1130570-mRNA-1:cds;Parent=Msa1130570-mRNA-1
chr7_3 CDS 82724907 82725068 82724907 ID=Msa1130570-mRNA-1:cds;Parent=Msa1130570-mRNA-1
Gene Sequence

>Msa1130570

ATGGACTCTTCTTCCGTCGACCGTCCTAAAGCGGTGGCGAAGCGTGCCAACGTCGCCGGAGAGAACCGCATGCCGCGGCTTAAGAATCAATTCAACAGCAAAATTGAAGATGCAGAGTCTAACAATAGGAAGAGGAAGATCGTCGCTGTCACCGATCTCTGTAACAGATCGGAGTCGGAGCTGAATGGAAACTCCACGAGAAAGAAGAAGAAGAAACCGATTCATCAAGAGAAGGAAGGTGATTTTGGCAAGGGACTAATGGATGTGTATAAGGTCAACAAAGCCAAAAATGGAATTGAAGATACCAAACAACTGGAAAAGGAAGGTAGCTGTAACAAGGTTAACAAAGCTAAAAATGGAGTCGAAGATACCAAACTACGGGGTATATCCAAAAAAGCCAAGAAGGGTGAAAGTTTGATGTGTCATCAGTGCCAGCGGAATGATAAGAGTGGTGTTGTCTTTTGCTCAAGTTGCAACAGAAAGCGCTATTGTTACGAATGCATTGAGAACTGGTACCCAGGAAAAACCCGAGAGGAATTTGAGAACGTGTGTCCGTTTTGTCTGGGTAATTGTAACTGCAAAGCTTGCTTACGGGAGTTTCCTGTGCTGATGGACCGAGAAATAGACGCCAGTGTCAAATTACAGCGGCTGCTGTACTTGCTATCTAAAGCCCTGCCAGTTCTGAGGCATATCCACCGGGAACAGAGCTTGGAACTAGAGATTGAAACCAAAATAAGGGGTAACGTGATGAGAAACATGTGCATAGAAATTTAG

Protein sequence

>Msa1130570

MDSSSVDRPKAVAKRANVAGENRMPRLKNQFNSKIEDAESNNRKRKIVAVTDLCNRSESELNGNSTRKKKKKPIHQEKEGDFGKGLMDVYKVNKAKNGIEDTKQLEKEGSCNKVNKAKNGVEDTKLRGISKKAKKGESLMCHQCQRNDKSGVVFCSSCNRKRYCYECIENWYPGKTREEFENVCPFCLGNCNCKACLREFPVLMDREIDASVKLQRLLYLLSKALPVLRHIHREQSLELEIETKIRGNVMRNMCIEI*