Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819020 | XP_003616736.1 | 73.684 | 76 | 7 | 1 | 10 | 85 | 1 | 63 | 1.32e-28 | 115 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819020 | sp|Q39635|Y38K_CAPSE | 59.740 | 77 | 23 | 2 | 10 | 85 | 1 | 70 | 5.06e-23 | 92.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819020 | G7K7B4 | 73.684 | 76 | 7 | 1 | 10 | 85 | 1 | 63 | 6.31e-29 | 115 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0819020 | Msa1219830 | 0.814943 | 1.191085e-51 | -8.615850e-47 |
Msa0819020 | Msa1365820 | 0.804185 | 2.438926e-49 | -8.615850e-47 |
Msa0819020 | Msa1401510 | 0.816003 | 6.917623e-52 | -8.615850e-47 |
Msa0819020 | Msa1440900 | 0.812235 | 4.694189e-51 | -8.615850e-47 |
Msa0140880 | Msa0819020 | 0.823701 | 1.201802e-53 | -8.615850e-47 |
Msa0369420 | Msa0819020 | 0.802034 | 6.794626e-49 | -8.615850e-47 |
Msa0463530 | Msa0819020 | 0.809249 | 2.077744e-50 | -8.615850e-47 |
Msa0268110 | Msa0819020 | 0.810462 | 1.138946e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819020 | MtrunA17_Chr5g0437911 | 73.684 | 76 | 7 | 1 | 10 | 85 | 1 | 63 | 1.22e-32 | 115 |
Msa0819020 | MtrunA17_Chr5g0437901 | 71.053 | 76 | 8 | 1 | 10 | 85 | 1 | 62 | 1.44e-30 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819020 | AT2G40410.1 | 63.158 | 76 | 20 | 2 | 10 | 85 | 1 | 68 | 1.10e-23 | 90.1 |
Msa0819020 | AT2G40410.2 | 62.821 | 78 | 17 | 3 | 10 | 85 | 1 | 68 | 1.68e-23 | 91.3 |
Find 26 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGGGATTGTTGACTTTCTA+TGG | 0.278264 | 5_3:+55122358 | Msa0819020:intron |
ACATGTTGTGTCTTCTAAAA+AGG | 0.296671 | 5_3:+55121842 | Msa0819020:CDS |
TCAATTATTCGTTCAACAAT+TGG | 0.299674 | 5_3:+55121498 | Msa0819020:CDS |
ACATGTCTGCTTAGTCCTTC+AGG | 0.390784 | 5_3:-55121825 | None:intergenic |
GGTTCAACAGCTACTTCAAC+TGG | 0.393087 | 5_3:-55122400 | None:intergenic |
TGTTGTTGGTTGGAAGCAAT+TGG | 0.485423 | 5_3:-55121544 | None:intergenic |
GGATGATCATCAGATGTTGT+TGG | 0.524132 | 5_3:-55121558 | None:intergenic |
GATCATCAGATGTTGTTGGT+TGG | 0.536125 | 5_3:-55121554 | None:intergenic |
TAACTTTCAAAACACCTCCC+AGG | 0.556186 | 5_3:+55121665 | Msa0819020:CDS |
GTTGGAAGCAATTGGCATAG+AGG | 0.559396 | 5_3:-55121536 | None:intergenic |
ATTTCATATTGTACTCCTTG+AGG | 0.564927 | 5_3:-55122439 | None:intergenic |
ACTCCTTGAGGTAAAGATGT+AGG | 0.571865 | 5_3:-55122427 | None:intergenic |
ACGAATAATTGAAGAAACCA+TGG | 0.578705 | 5_3:-55121487 | None:intergenic |
GAAACACCAACGGTGGATTG+TGG | 0.598681 | 5_3:-55121579 | None:intergenic |
GAAACACCAACGGTGGATTG+TGG | 0.598681 | 5_3:-55121621 | None:intergenic |
TGAGGTAAAGATGTAGGAGG+AGG | 0.606495 | 5_3:-55122421 | None:intergenic |
CCTCCTACATCTTTACCTCA+AGG | 0.623673 | 5_3:+55122424 | Msa0819020:three_prime_UTR |
CCTTGAGGTAAAGATGTAGG+AGG | 0.635074 | 5_3:-55122424 | None:intergenic |
GATCATCCACAATCCACCGT+TGG | 0.640077 | 5_3:+55121573 | Msa0819020:CDS |
GATCATCCACAATCCACCGT+TGG | 0.640077 | 5_3:+55121615 | Msa0819020:CDS |
AGCAAGAGCTGAAACACCAA+CGG | 0.667239 | 5_3:-55121631 | None:intergenic |
AGCAAGAGCTGAAACACCAA+CGG | 0.669678 | 5_3:-55121589 | None:intergenic |
TCAACTGGAGTATGTGACAG+TGG | 0.679694 | 5_3:-55122385 | None:intergenic |
AACAAAATAGGTTACCTGGG+AGG | 0.716149 | 5_3:-55121679 | None:intergenic |
AAGAGCTGAAACACCAACGG+TGG | 0.734495 | 5_3:-55121586 | None:intergenic |
AAGAGCTGAAACACCAACGG+TGG | 0.734495 | 5_3:-55121628 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATATTGTTTTGAATTTGA+AGG | + | chr5_3:55122097-55122116 | Msa0819020:intron | 15.0% |
!!! | TTATATTGTTTTGAATTTGA+AGG | + | chr5_3:55122097-55122116 | Msa0819020:intron | 15.0% |
!!! | ATGTTTTTGAGTAACAAAAT+AGG | - | chr5_3:55121694-55121713 | None:intergenic | 20.0% |
!! | AATTAAGTAGAATTGAAGTT+TGG | - | chr5_3:55122251-55122270 | None:intergenic | 20.0% |
!! | AACTTCAATTCTACTTAATT+TGG | + | chr5_3:55122251-55122270 | Msa0819020:intron | 20.0% |
!!! | TGTTTTGTTGTTTGATTTAT+AGG | + | chr5_3:55122339-55122358 | Msa0819020:intron | 20.0% |
!!! | GTTTTGTTGTTTGATTTATA+GGG | + | chr5_3:55122340-55122359 | Msa0819020:intron | 20.0% |
!!! | ATGTTTTTGAGTAACAAAAT+AGG | - | chr5_3:55121694-55121713 | None:intergenic | 20.0% |
!! | AATTAAGTAGAATTGAAGTT+TGG | - | chr5_3:55122251-55122270 | None:intergenic | 20.0% |
!! | AACTTCAATTCTACTTAATT+TGG | + | chr5_3:55122251-55122270 | Msa0819020:intron | 20.0% |
!!! | TGTTTTGTTGTTTGATTTAT+AGG | + | chr5_3:55122339-55122358 | Msa0819020:intron | 20.0% |
!!! | GTTTTGTTGTTTGATTTATA+GGG | + | chr5_3:55122340-55122359 | Msa0819020:intron | 20.0% |
! | TCAATTATTCGTTCAACAAT+TGG | + | chr5_3:55121498-55121517 | Msa0819020:CDS | 25.0% |
!! | TGGTAAAAAGAGTAGAATTT+TGG | - | chr5_3:55121746-55121765 | None:intergenic | 25.0% |
! | TATATGCACATGTTACAAAA+TGG | - | chr5_3:55121775-55121794 | None:intergenic | 25.0% |
! | GTAAAAGAAAATTACACTGA+CGG | + | chr5_3:55122031-55122050 | Msa0819020:intron | 25.0% |
!! | GCATTAAAGGGTATAATAAT+TGG | - | chr5_3:55122073-55122092 | None:intergenic | 25.0% |
! | CAATATAAGCAAGCATTAAA+GGG | - | chr5_3:55122085-55122104 | None:intergenic | 25.0% |
! | ACAATATAAGCAAGCATTAA+AGG | - | chr5_3:55122086-55122105 | None:intergenic | 25.0% |
! | AGGTATAGAAAGTTAATAGA+TGG | + | chr5_3:55122117-55122136 | Msa0819020:intron | 25.0% |
! | ATAGAAAGTTAATAGATGGT+TGG | + | chr5_3:55122121-55122140 | Msa0819020:intron | 25.0% |
! | TCAATTATTCGTTCAACAAT+TGG | + | chr5_3:55121498-55121517 | Msa0819020:CDS | 25.0% |
!! | TGGTAAAAAGAGTAGAATTT+TGG | - | chr5_3:55121746-55121765 | None:intergenic | 25.0% |
! | TATATGCACATGTTACAAAA+TGG | - | chr5_3:55121775-55121794 | None:intergenic | 25.0% |
! | GTAAAAGAAAATTACACTGA+CGG | + | chr5_3:55122031-55122050 | Msa0819020:intron | 25.0% |
!! | GCATTAAAGGGTATAATAAT+TGG | - | chr5_3:55122073-55122092 | None:intergenic | 25.0% |
! | CAATATAAGCAAGCATTAAA+GGG | - | chr5_3:55122085-55122104 | None:intergenic | 25.0% |
! | ACAATATAAGCAAGCATTAA+AGG | - | chr5_3:55122086-55122105 | None:intergenic | 25.0% |
! | AGGTATAGAAAGTTAATAGA+TGG | + | chr5_3:55122117-55122136 | Msa0819020:intron | 25.0% |
! | ATAGAAAGTTAATAGATGGT+TGG | + | chr5_3:55122121-55122140 | Msa0819020:intron | 25.0% |
AGTAACAAAATAGGTTACCT+GGG | - | chr5_3:55121685-55121704 | None:intergenic | 30.0% | |
!! | GTAGAATTTTGGTAAGTTTG+AGG | - | chr5_3:55121735-55121754 | None:intergenic | 30.0% |
!!! | AATCTTTTTTAGGTTCCTGA+AGG | + | chr5_3:55121810-55121829 | Msa0819020:intron | 30.0% |
! | ACATGTTGTGTCTTCTAAAA+AGG | + | chr5_3:55121842-55121861 | Msa0819020:CDS | 30.0% |
ACAGTGCATAGAAATTAATC+TGG | - | chr5_3:55121949-55121968 | None:intergenic | 30.0% | |
!! | CTTGTTATTCTGACATTGAA+AGG | + | chr5_3:55122189-55122208 | Msa0819020:intron | 30.0% |
!!! | CCTCAACATCTTCTTTTTTA+TGG | - | chr5_3:55122215-55122234 | None:intergenic | 30.0% |
CCATAAAAAAGAAGATGTTG+AGG | + | chr5_3:55122212-55122231 | Msa0819020:intron | 30.0% | |
AGTAACAAAATAGGTTACCT+GGG | - | chr5_3:55121685-55121704 | None:intergenic | 30.0% | |
!! | GTAGAATTTTGGTAAGTTTG+AGG | - | chr5_3:55121735-55121754 | None:intergenic | 30.0% |
!!! | AATCTTTTTTAGGTTCCTGA+AGG | + | chr5_3:55121810-55121829 | Msa0819020:intron | 30.0% |
! | ACATGTTGTGTCTTCTAAAA+AGG | + | chr5_3:55121842-55121861 | Msa0819020:CDS | 30.0% |
ACAGTGCATAGAAATTAATC+TGG | - | chr5_3:55121949-55121968 | None:intergenic | 30.0% | |
!! | CTTGTTATTCTGACATTGAA+AGG | + | chr5_3:55122189-55122208 | Msa0819020:intron | 30.0% |
!!! | CCTCAACATCTTCTTTTTTA+TGG | - | chr5_3:55122215-55122234 | None:intergenic | 30.0% |
CCATAAAAAAGAAGATGTTG+AGG | + | chr5_3:55122212-55122231 | Msa0819020:intron | 30.0% | |
GAGTAACAAAATAGGTTACC+TGG | - | chr5_3:55121686-55121705 | None:intergenic | 35.0% | |
TGCACATGTTACAAAATGGT+GGG | - | chr5_3:55121771-55121790 | None:intergenic | 35.0% | |
ATGCACATGTTACAAAATGG+TGG | - | chr5_3:55121772-55121791 | None:intergenic | 35.0% | |
GTTAATAGATGGTTGGAAAG+AGG | + | chr5_3:55122128-55122147 | Msa0819020:intron | 35.0% | |
!! | TAGGGATTGTTGACTTTCTA+TGG | + | chr5_3:55122358-55122377 | Msa0819020:intron | 35.0% |
GAGTAACAAAATAGGTTACC+TGG | - | chr5_3:55121686-55121705 | None:intergenic | 35.0% | |
TGCACATGTTACAAAATGGT+GGG | - | chr5_3:55121771-55121790 | None:intergenic | 35.0% | |
ATGCACATGTTACAAAATGG+TGG | - | chr5_3:55121772-55121791 | None:intergenic | 35.0% | |
GTTAATAGATGGTTGGAAAG+AGG | + | chr5_3:55122128-55122147 | Msa0819020:intron | 35.0% | |
!! | TAGGGATTGTTGACTTTCTA+TGG | + | chr5_3:55122358-55122377 | Msa0819020:intron | 35.0% |
! | TGTTGTTGGTTGGAAGCAAT+TGG | - | chr5_3:55121547-55121566 | None:intergenic | 40.0% |
GATCATCAGATGTTGTTGGT+TGG | - | chr5_3:55121557-55121576 | None:intergenic | 40.0% | |
GGATGATCATCAGATGTTGT+TGG | - | chr5_3:55121561-55121580 | None:intergenic | 40.0% | |
TAACTTTCAAAACACCTCCC+AGG | + | chr5_3:55121665-55121684 | Msa0819020:CDS | 40.0% | |
AACAAAATAGGTTACCTGGG+AGG | - | chr5_3:55121682-55121701 | None:intergenic | 40.0% | |
! | ATGTTACAAAATGGTGGGGT+TGG | - | chr5_3:55121766-55121785 | None:intergenic | 40.0% |
GCACATGTTACAAAATGGTG+GGG | - | chr5_3:55121770-55121789 | None:intergenic | 40.0% | |
CTAAAAAGGCTCAAGCTATG+TGG | + | chr5_3:55121856-55121875 | Msa0819020:CDS | 40.0% | |
ACTCCTTGAGGTAAAGATGT+AGG | - | chr5_3:55122430-55122449 | None:intergenic | 40.0% | |
! | TGTTGTTGGTTGGAAGCAAT+TGG | - | chr5_3:55121547-55121566 | None:intergenic | 40.0% |
GATCATCAGATGTTGTTGGT+TGG | - | chr5_3:55121557-55121576 | None:intergenic | 40.0% | |
GGATGATCATCAGATGTTGT+TGG | - | chr5_3:55121561-55121580 | None:intergenic | 40.0% | |
TAACTTTCAAAACACCTCCC+AGG | + | chr5_3:55121665-55121684 | Msa0819020:CDS | 40.0% | |
AACAAAATAGGTTACCTGGG+AGG | - | chr5_3:55121682-55121701 | None:intergenic | 40.0% | |
! | ATGTTACAAAATGGTGGGGT+TGG | - | chr5_3:55121766-55121785 | None:intergenic | 40.0% |
GCACATGTTACAAAATGGTG+GGG | - | chr5_3:55121770-55121789 | None:intergenic | 40.0% | |
CTAAAAAGGCTCAAGCTATG+TGG | + | chr5_3:55121856-55121875 | Msa0819020:CDS | 40.0% | |
ACTCCTTGAGGTAAAGATGT+AGG | - | chr5_3:55122430-55122449 | None:intergenic | 40.0% | |
GTTGGAAGCAATTGGCATAG+AGG | - | chr5_3:55121539-55121558 | None:intergenic | 45.0% | |
AGCAAGAGCTGAAACACCAA+CGG | - | chr5_3:55121592-55121611 | None:intergenic | 45.0% | |
AGCAAGAGCTGAAACACCAA+CGG | - | chr5_3:55121592-55121611 | None:intergenic | 45.0% | |
ACATGTCTGCTTAGTCCTTC+AGG | - | chr5_3:55121828-55121847 | None:intergenic | 45.0% | |
! | ACAAGACTAGCTGCTTCTTC+AGG | - | chr5_3:55122174-55122193 | None:intergenic | 45.0% |
TCAACTGGAGTATGTGACAG+TGG | - | chr5_3:55122388-55122407 | None:intergenic | 45.0% | |
GGTTCAACAGCTACTTCAAC+TGG | - | chr5_3:55122403-55122422 | None:intergenic | 45.0% | |
TGAGGTAAAGATGTAGGAGG+AGG | - | chr5_3:55122424-55122443 | None:intergenic | 45.0% | |
CCTTGAGGTAAAGATGTAGG+AGG | - | chr5_3:55122427-55122446 | None:intergenic | 45.0% | |
CCTCCTACATCTTTACCTCA+AGG | + | chr5_3:55122424-55122443 | Msa0819020:three_prime_UTR | 45.0% | |
GTTGGAAGCAATTGGCATAG+AGG | - | chr5_3:55121539-55121558 | None:intergenic | 45.0% | |
AGCAAGAGCTGAAACACCAA+CGG | - | chr5_3:55121592-55121611 | None:intergenic | 45.0% | |
AGCAAGAGCTGAAACACCAA+CGG | - | chr5_3:55121592-55121611 | None:intergenic | 45.0% | |
ACATGTCTGCTTAGTCCTTC+AGG | - | chr5_3:55121828-55121847 | None:intergenic | 45.0% | |
! | ACAAGACTAGCTGCTTCTTC+AGG | - | chr5_3:55122174-55122193 | None:intergenic | 45.0% |
TCAACTGGAGTATGTGACAG+TGG | - | chr5_3:55122388-55122407 | None:intergenic | 45.0% | |
GGTTCAACAGCTACTTCAAC+TGG | - | chr5_3:55122403-55122422 | None:intergenic | 45.0% | |
TGAGGTAAAGATGTAGGAGG+AGG | - | chr5_3:55122424-55122443 | None:intergenic | 45.0% | |
CCTTGAGGTAAAGATGTAGG+AGG | - | chr5_3:55122427-55122446 | None:intergenic | 45.0% | |
CCTCCTACATCTTTACCTCA+AGG | + | chr5_3:55122424-55122443 | Msa0819020:three_prime_UTR | 45.0% | |
!!! | TTTATTTTTTAATCTTTTTT+AGG | + | chr5_3:55121800-55121819 | Msa0819020:intron | 5.0% |
!!! | TTTATTTTTTAATCTTTTTT+AGG | + | chr5_3:55121800-55121819 | Msa0819020:intron | 5.0% |
GATCATCCACAATCCACCGT+TGG | + | chr5_3:55121573-55121592 | Msa0819020:CDS | 50.0% | |
!! | GAAACACCAACGGTGGATTG+TGG | - | chr5_3:55121582-55121601 | None:intergenic | 50.0% |
AAGAGCTGAAACACCAACGG+TGG | - | chr5_3:55121589-55121608 | None:intergenic | 50.0% | |
GATCATCCACAATCCACCGT+TGG | + | chr5_3:55121573-55121592 | Msa0819020:CDS | 50.0% | |
!! | GAAACACCAACGGTGGATTG+TGG | - | chr5_3:55121582-55121601 | None:intergenic | 50.0% |
AAGAGCTGAAACACCAACGG+TGG | - | chr5_3:55121589-55121608 | None:intergenic | 50.0% | |
GATCATCCACAATCCACCGT+TGG | + | chr5_3:55121573-55121592 | Msa0819020:CDS | 50.0% | |
!! | GAAACACCAACGGTGGATTG+TGG | - | chr5_3:55121582-55121601 | None:intergenic | 50.0% |
AAGAGCTGAAACACCAACGG+TGG | - | chr5_3:55121589-55121608 | None:intergenic | 50.0% | |
GATCATCCACAATCCACCGT+TGG | + | chr5_3:55121573-55121592 | Msa0819020:CDS | 50.0% | |
!! | GAAACACCAACGGTGGATTG+TGG | - | chr5_3:55121582-55121601 | None:intergenic | 50.0% |
AAGAGCTGAAACACCAACGG+TGG | - | chr5_3:55121589-55121608 | None:intergenic | 50.0% | |
AAGAGGCAAGACCACCACCT+AGG | + | chr5_3:55122145-55122164 | Msa0819020:intron | 55.0% | |
TCTTCAGGTGTCCTAGGTGG+TGG | - | chr5_3:55122159-55122178 | None:intergenic | 55.0% | |
GCTTCTTCAGGTGTCCTAGG+TGG | - | chr5_3:55122162-55122181 | None:intergenic | 55.0% | |
GCTGCTTCTTCAGGTGTCCT+AGG | - | chr5_3:55122165-55122184 | None:intergenic | 55.0% | |
AAGAGGCAAGACCACCACCT+AGG | + | chr5_3:55122145-55122164 | Msa0819020:intron | 55.0% | |
TCTTCAGGTGTCCTAGGTGG+TGG | - | chr5_3:55122159-55122178 | None:intergenic | 55.0% | |
GCTTCTTCAGGTGTCCTAGG+TGG | - | chr5_3:55122162-55122181 | None:intergenic | 55.0% | |
GCTGCTTCTTCAGGTGTCCT+AGG | - | chr5_3:55122165-55122184 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 55121489 | 55122458 | 55121489 | ID=Msa0819020;Name=Msa0819020 |
chr5_3 | mRNA | 55121489 | 55122458 | 55121489 | ID=Msa0819020-mRNA-1;Parent=Msa0819020;Name=Msa0819020-mRNA-1;_AED=0.46;_eAED=0.51;_QI=0|0|0.33|1|1|1|3|88|87 |
chr5_3 | exon | 55121489 | 55121686 | 55121489 | ID=Msa0819020-mRNA-1:exon:16720;Parent=Msa0819020-mRNA-1 |
chr5_3 | exon | 55121822 | 55121877 | 55121822 | ID=Msa0819020-mRNA-1:exon:16721;Parent=Msa0819020-mRNA-1 |
chr5_3 | exon | 55122361 | 55122458 | 55122361 | ID=Msa0819020-mRNA-1:exon:16722;Parent=Msa0819020-mRNA-1 |
chr5_3 | CDS | 55121489 | 55121686 | 55121489 | ID=Msa0819020-mRNA-1:cds;Parent=Msa0819020-mRNA-1 |
chr5_3 | CDS | 55121822 | 55121877 | 55121822 | ID=Msa0819020-mRNA-1:cds;Parent=Msa0819020-mRNA-1 |
chr5_3 | CDS | 55122361 | 55122370 | 55122361 | ID=Msa0819020-mRNA-1:cds;Parent=Msa0819020-mRNA-1 |
chr5_3 | three_prime_UTR | 55122371 | 55122458 | 55122371 | ID=Msa0819020-mRNA-1:three_prime_utr;Parent=Msa0819020-mRNA-1 |
Gene Sequence |
Protein sequence |