AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365820 MtrunA17_Chr4g0035391 77.280 647 112 7 1 643 1 616 0.0 1008
Msa1365820 MtrunA17_Chr3g0144911 98.807 419 5 0 1 419 1 419 0.0 867
Msa1365820 MtrunA17_Chr1g0155521 65.741 648 188 11 1 642 1 620 0.0 847
Msa1365820 MtrunA17_Chr3g0141821 57.188 626 208 7 18 643 7 572 0.0 660
Msa1365820 MtrunA17_Chr8g0372651 50.416 601 213 11 39 629 17 542 0.0 547
Msa1365820 MtrunA17_Chr3g0144891 52.097 620 225 14 28 643 18 569 0.0 546
Msa1365820 MtrunA17_Chr5g0404711 63.830 376 109 3 41 416 10 358 6.63e-175 506
Msa1365820 MtrunA17_Chr5g0404711 40.196 102 57 2 542 643 378 475 4.64e-14 75.1
Msa1365820 MtrunA17_Chr3g0080051 42.373 649 321 13 13 642 4 618 7.41e-159 470
Msa1365820 MtrunA17_Chr4g0035361 51.923 520 189 13 110 629 1 459 1.00e-157 462
Msa1365820 MtrunA17_Chr7g0236461 42.434 641 301 14 14 643 4 587 3.69e-157 465
Msa1365820 MtrunA17_Chr4g0035381 59.432 387 83 5 17 395 16 336 6.31e-144 424
Msa1365820 MtrunA17_Chr8g0369291 39.904 624 327 11 31 642 15 602 6.69e-134 405
Msa1365820 MtrunA17_Chr3g0144901 95.025 201 5 1 443 643 1 196 1.67e-133 389
Msa1365820 MtrunA17_Chr5g0399151 49.847 327 159 2 44 370 54 375 1.58e-109 337
Msa1365820 MtrunA17_Chr3g0102691 31.301 246 142 7 88 317 1 235 1.68e-19 90.5
Msa1365820 MtrunA17_Chr4g0076441 25.982 331 204 10 85 393 1 312 3.75e-19 89.4
Msa1365820 MtrunA17_Chr3g0131581 31.163 215 129 6 107 320 66 262 4.20e-18 85.1
Msa1365820 MtrunA17_Chr2g0290661 28.870 239 146 7 93 317 13 241 7.16e-18 85.5
Msa1365820 MtrunA17_Chr8g0385681 31.944 216 128 7 106 320 48 245 2.04e-16 79.7
Msa1365820 MtrunA17_Chr4g0014901 30.180 222 129 9 110 320 271 477 4.31e-16 82.0
Msa1365820 MtrunA17_Chr8g0385291 29.437 231 138 7 110 330 181 396 4.90e-16 81.3
Msa1365820 MtrunA17_Chr4g0004981 27.313 227 140 8 110 326 125 336 3.02e-15 78.6
Msa1365820 MtrunA17_Chr1g0155071 30.986 213 121 9 113 320 48 239 2.54e-14 73.9
Msa1365820 MtrunA17_Chr1g0161441 30.047 213 130 8 111 320 32 228 3.22e-13 70.1
Msa1365820 MtrunA17_Chr3g0131071 28.829 222 133 8 110 320 249 456 2.81e-12 69.7
Msa1365820 MtrunA17_Chr4g0014911 26.549 226 143 6 110 324 139 352 3.76e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365820 AT2G21520.1 72.403 645 145 6 1 637 1 620 0.0 937
Msa1365820 AT2G21520.2 71.803 649 146 7 1 637 1 624 0.0 927
Msa1365820 AT2G21520.3 71.803 649 146 7 1 637 1 624 0.0 927
Msa1365820 AT4G39170.1 70.968 651 144 8 1 643 1 614 0.0 920
Msa1365820 AT4G39170.2 70.814 651 143 9 1 643 1 612 0.0 912
Msa1365820 AT1G19650.1 56.079 658 224 11 1 643 1 608 0.0 689
Msa1365820 AT1G75370.1 56.947 655 227 15 1 643 1 612 0.0 667
Msa1365820 AT1G75370.2 56.535 658 228 15 1 643 1 615 0.0 664
Msa1365820 AT1G19650.2 55.596 554 187 8 105 643 27 536 0.0 585
Msa1365820 AT2G21540.6 50.082 611 217 13 23 629 11 537 0.0 572
Msa1365820 AT2G21540.2 50.082 611 217 13 23 629 11 537 0.0 572
Msa1365820 AT2G21540.1 50.082 611 217 13 23 629 11 537 0.0 572
Msa1365820 AT2G21540.4 50.082 611 217 13 23 629 11 537 0.0 572
Msa1365820 AT2G21540.3 50.245 611 210 13 23 629 11 531 0.0 571
Msa1365820 AT2G21540.5 50.245 611 210 13 23 629 11 531 0.0 571
Msa1365820 AT4G34580.2 48.455 615 233 9 24 629 3 542 0.0 555
Msa1365820 AT4G34580.1 48.455 615 233 9 24 629 3 542 0.0 555
Msa1365820 AT1G19650.3 65.783 415 134 5 1 415 1 407 0.0 546
Msa1365820 AT4G39180.3 73.214 336 86 3 23 357 11 343 0.0 533
Msa1365820 AT4G39180.1 73.214 336 86 3 23 357 11 343 0.0 533
Msa1365820 AT4G39180.2 73.214 336 86 3 23 357 11 343 0.0 533
Msa1365820 AT4G36490.1 68.889 360 96 4 35 394 8 351 4.84e-178 517
Msa1365820 AT4G36490.1 35.172 145 83 4 490 629 393 531 2.48e-15 79.7
Msa1365820 AT2G18180.2 74.684 316 72 4 37 351 14 322 3.16e-173 504
Msa1365820 AT2G18180.2 55.714 70 31 0 561 630 466 535 2.71e-16 82.8
Msa1365820 AT2G18180.1 74.684 316 72 4 37 351 14 322 6.01e-173 504
Msa1365820 AT2G18180.1 55.714 70 31 0 561 630 466 535 3.38e-16 82.4
Msa1365820 AT2G16380.2 67.781 329 103 2 26 353 5 331 5.55e-167 489
Msa1365820 AT2G16380.1 67.781 329 103 2 26 353 5 331 5.55e-167 489
Msa1365820 AT3G24840.1 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1365820 AT3G24840.6 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1365820 AT3G24840.4 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1365820 AT3G24840.2 44.839 620 264 13 29 643 22 568 5.12e-164 482
Msa1365820 AT3G24840.7 45.000 620 264 13 29 643 22 569 8.90e-164 481
Msa1365820 AT3G24840.3 45.000 620 264 13 29 643 22 569 8.90e-164 481
Msa1365820 AT3G24840.5 45.000 620 264 13 29 643 22 569 8.90e-164 481
Msa1365820 AT1G55690.2 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1365820 AT1G55690.4 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1365820 AT1G55690.1 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1365820 AT1G55690.5 43.214 641 332 13 14 642 5 625 1.65e-153 457
Msa1365820 AT1G55690.3 43.286 633 329 12 14 636 5 617 1.82e-152 454
Msa1365820 AT2G18180.4 80.417 240 47 0 112 351 12 251 7.51e-150 442
Msa1365820 AT2G18180.4 55.714 70 31 0 561 630 395 464 1.57e-16 83.2
Msa1365820 AT2G18180.3 80.083 241 48 0 111 351 11 251 1.24e-149 442
Msa1365820 AT2G18180.3 55.714 70 31 0 561 630 395 464 1.84e-16 83.2
Msa1365820 AT2G18180.5 81.250 224 42 0 128 351 1 224 8.41e-141 418
Msa1365820 AT2G18180.5 55.714 70 31 0 561 630 368 437 1.58e-16 83.2
Msa1365820 AT5G56160.2 55.942 345 148 3 17 359 2 344 8.15e-135 404
Msa1365820 AT5G56160.1 55.780 346 149 3 16 359 1 344 5.78e-134 405
Msa1365820 AT5G56160.3 55.780 346 149 3 16 359 1 344 5.78e-134 405
Msa1365820 AT2G16380.3 75.664 226 55 0 128 353 1 226 1.70e-130 391
Msa1365820 AT5G47510.2 50.775 258 127 0 86 343 27 284 1.39e-99 308
Msa1365820 AT5G47510.1 50.775 258 127 0 86 343 26 283 4.57e-99 308
Msa1365820 AT5G47510.4 50.775 258 127 0 86 343 27 284 5.25e-99 308
Msa1365820 AT5G47510.3 52.655 226 107 0 118 343 2 227 6.20e-91 285
Msa1365820 AT5G47730.4 27.984 243 156 6 86 317 7 241 2.33e-19 90.5
Msa1365820 AT5G47730.1 27.984 243 156 6 86 317 7 241 2.33e-19 90.5
Msa1365820 AT1G55840.1 29.098 244 145 6 97 328 19 246 5.51e-18 85.9
Msa1365820 AT1G55840.2 30.047 213 133 4 111 317 12 214 2.99e-17 83.2
Msa1365820 AT1G01630.1 31.604 212 126 7 110 320 52 245 1.05e-16 80.9
Msa1365820 AT1G72160.1 24.336 226 148 8 110 324 166 379 2.18e-15 79.7
Msa1365820 AT5G47730.2 27.604 192 131 3 128 317 1 186 5.02e-14 73.6
Msa1365820 AT5G47730.3 27.604 192 131 3 128 317 1 186 5.02e-14 73.6
Msa1365820 AT4G09160.2 26.106 226 144 6 110 324 316 529 5.17e-12 69.3
Msa1365820 AT4G09160.3 26.106 226 144 6 110 324 316 529 5.35e-12 69.3
Msa1365820 AT4G09160.1 26.106 226 144 6 110 324 341 554 6.66e-12 69.3
Msa1365820 AT3G51670.1 25.000 236 149 9 110 337 84 299 1.33e-11 67.4

Find 183 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATCAAATTCAAATT+AGG 0.085421 tig0018389:-5431 Msa1365820:five_prime_UTR
CATATGACCTTCAATATTTC+AGG 0.179559 tig0018389:+3507 Msa1365820:intergenic
TTGTTGCAGTCCACAATATT+TGG 0.248808 tig0018389:-2939 Msa1365820:intron
GAATAGCTCTTCATTGCTTT+TGG 0.251350 tig0018389:+3124 Msa1365820:intergenic
GGAAACATTACTTAGGTTCT+TGG 0.254664 tig0018389:-3745 Msa1365820:intron
CTCGCAACTTGGCTTCTTCC+TGG 0.254873 tig0018389:+1491 Msa1365820:intergenic
CAGAGGTCTCACACCTTAAA+AGG 0.255250 tig0018389:-2696 Msa1365820:CDS
TTCCAATCAAATTCAAATTA+GGG 0.256826 tig0018389:-5430 Msa1365820:five_prime_UTR
TTGTAGGAGGGAGTTGAATT+AGG 0.272628 tig0018389:+5386 Msa1365820:intergenic
ACCCGAGCTTTAACTCCTTC+TGG 0.274076 tig0018389:+2161 Msa1365820:intergenic
TGTGGATCCCACTTTAGTTT+TGG 0.299012 tig0018389:+5643 Msa1365820:intergenic
AACCCTAATTTGAATTTGAT+TGG 0.310023 tig0018389:+5428 Msa1365820:intergenic
TTAAAAGGTTGGTGGCTTCT+TGG 0.311173 tig0018389:-2681 Msa1365820:intron
AGCTAGCAAAGATGCTATTC+TGG 0.321042 tig0018389:+1181 Msa1365820:intergenic
ACTCTCACCGAACAGGTAAA+AGG 0.336501 tig0018389:-3199 Msa1365820:intron
AGAGTTAATTGCTACTAAAA+AGG 0.344700 tig0018389:-1817 Msa1365820:intron
ATGGCCCTTTATCAGATCTA+AGG 0.345070 tig0018389:+3538 Msa1365820:intergenic
CTGACTTTGTAAAATTCTTA+AGG 0.347694 tig0018389:+4174 Msa1365820:intergenic
GATACATCTACTGCCGAATC+AGG 0.348018 tig0018389:-3172 Msa1365820:CDS
AAGGAGTTAAAGCTCGGGTT+TGG 0.349644 tig0018389:-2157 Msa1365820:CDS
CAGGTACCTCCGAGAAATTC+CGG 0.352903 tig0018389:+3585 Msa1365820:intergenic
GGAAGTTATGCTAACATGTC+TGG 0.353390 tig0018389:-2786 Msa1365820:CDS
CACGAACAGGGGTCAGTCTA+AGG 0.356073 tig0018389:+3098 Msa1365820:intergenic
CCAAGTCTTTCAATATAAAC+AGG 0.360352 tig0018389:+4465 Msa1365820:intergenic
CTCTTCCATTCAGCATCAAC+AGG 0.363635 tig0018389:+2732 Msa1365820:intergenic
GTCTGTGCTTGGCTTGTTGA+AGG 0.374114 tig0018389:+1987 Msa1365820:intergenic
CACTTAATGTAGTGAGTTGC+CGG 0.379771 tig0018389:-3604 Msa1365820:intron
TGGTAATCATCAAAAGCTTC+AGG 0.385856 tig0018389:+4977 Msa1365820:intergenic
ACTGATGCAGGTTACAACTA+TGG 0.387260 tig0018389:-4424 Msa1365820:CDS
TGTTGAATGCTGCGGTCTGC+CGG 0.390645 tig0018389:-1857 Msa1365820:CDS
TAGTATCATACTATCATCAT+AGG 0.390835 tig0018389:+5698 Msa1365820:intergenic
CTACAATGGAGAAGGGAGTT+TGG 0.395043 tig0018389:-4789 Msa1365820:CDS
GGATGCCTTAGATCTGATAA+AGG 0.399200 tig0018389:-3543 Msa1365820:CDS
CGGCATTTATGATAAACATT+TGG 0.399702 tig0018389:+3918 Msa1365820:intergenic
TTGCCTCATTCTTCATTCCC+TGG 0.401093 tig0018389:+5769 Msa1365820:intergenic
CCTGTTTATATTGAAAGACT+TGG 0.404931 tig0018389:-4465 Msa1365820:CDS
GATGAAAGGAGAACCAGAAT+TGG 0.406535 tig0018389:-5181 Msa1365820:CDS
AGACTTACTTCCTCACGAAC+AGG 0.409545 tig0018389:+3085 Msa1365820:intergenic
TTCAGCTTCTGACCCTGATT+CGG 0.410951 tig0018389:+3159 Msa1365820:intergenic
GGTCTGCCGGGTGGATGCTT+TGG 0.413892 tig0018389:-1844 Msa1365820:CDS
CCCTCCTTGCTGAAAAGGTT+AGG 0.416929 tig0018389:-1948 Msa1365820:CDS
TCTTTCCCTCCTTGCTGAAA+AGG 0.421998 tig0018389:-1953 Msa1365820:CDS
CAACTCCCTCCTACAATGTC+TGG 0.427157 tig0018389:-5379 Msa1365820:exon
ATGATTACCATATGATGTTA+AGG 0.431353 tig0018389:-4964 Msa1365820:intron
TTAACTTACGTGGATCTTTG+AGG 0.437733 tig0018389:+3838 Msa1365820:intergenic
TTCTTGCTTATCTTGTCCAC+TGG 0.437905 tig0018389:-1072 Msa1365820:three_prime_UTR
TGATATTGCAGGAAGTTTGT+TGG 0.441337 tig0018389:+2070 Msa1365820:intergenic
AGCTCGGGTTTGGGTAGCCC+TGG 0.441503 tig0018389:-2147 Msa1365820:CDS
ATGAGCACCTTAACATCATA+TGG 0.441586 tig0018389:+4957 Msa1365820:intergenic
AGTGAGTTGCCGGAATTTCT+CGG 0.443277 tig0018389:-3594 Msa1365820:CDS
GGTTGAAAAGCTTTAGTTGT+TGG 0.444239 tig0018389:-1101 Msa1365820:three_prime_UTR
AGGAGTTAAAGCTCGGGTTT+GGG 0.448011 tig0018389:-2156 Msa1365820:CDS
GTAACCTGCATCAGTTTGTT+CGG 0.450895 tig0018389:+4432 Msa1365820:intergenic
TTGAGAATTCAGAAGATGAA+AGG 0.452181 tig0018389:-5195 Msa1365820:CDS
CTCCACAACAGTCTAAATCC+AGG 0.459305 tig0018389:+3893 Msa1365820:intergenic
TTTATCATAAATGCCGGCCC+TGG 0.461240 tig0018389:-3911 Msa1365820:CDS
GTTAGGTGAGCTTGAAGAGA+AGG 0.464549 tig0018389:-1931 Msa1365820:CDS
TCATCATTAGATGATATTGC+AGG 0.467092 tig0018389:+2059 Msa1365820:intergenic
TGTTAGCTCTGTTTCTATTG+AGG 0.470702 tig0018389:-5071 Msa1365820:CDS
TCTCAATGGCGAACCACGGC+GGG 0.475604 tig0018389:-3400 Msa1365820:CDS
CTAAAGACAGAGAAAGAGAA+AGG 0.476100 tig0018389:+5562 Msa1365820:intergenic
TTTACCCTTTCATCAGCTGC+AGG 0.478475 tig0018389:-5606 Msa1365820:five_prime_UTR
TCTAAGAGAATGCTTAAACT+TGG 0.481804 tig0018389:+5126 Msa1365820:intergenic
CACTGCCTGCAGCTGATGAA+AGG 0.483068 tig0018389:+5601 Msa1365820:intergenic
ACACTATACCAAAACTAAAG+TGG 0.485836 tig0018389:-5651 Msa1365820:five_prime_UTR
AAGGTCTAGCGAAACGATCA+AGG 0.486798 tig0018389:+5353 Msa1365820:intergenic
ATGTTTGTTGTCTCGAGAGT+TGG 0.489587 tig0018389:+2020 Msa1365820:intergenic
AACAATTCCGCCTTCTCGTA+AGG 0.494601 tig0018389:+1876 Msa1365820:intergenic
TTTGTAGATTTCTGAAAGCA+AGG 0.495319 tig0018389:-4854 Msa1365820:intron
ATGCCAACTTACTCGCAACT+TGG 0.496679 tig0018389:+1480 Msa1365820:intergenic
CACAATATCTCCAAATATTG+TGG 0.497971 tig0018389:+2929 Msa1365820:intergenic
ACCACAATCTTAGATGTTCA+AGG 0.499904 tig0018389:-4303 Msa1365820:CDS
ATTTGTCAGGCTAAGATAGC+AGG 0.500992 tig0018389:-2813 Msa1365820:intron
AGCAAATAACATCAGGAAGA+AGG 0.501851 tig0018389:+2121 Msa1365820:intergenic
ACATCAGGAAGAAGGCAGCC+AGG 0.503548 tig0018389:+2129 Msa1365820:intergenic
TCAACAGGTTTGTCTACCAT+TGG 0.504730 tig0018389:+2747 Msa1365820:intergenic
TTCTCGTAAGGCATTTCAGA+TGG 0.509154 tig0018389:+1888 Msa1365820:intergenic
CTCCAGAAGGAGTTAAAGCT+CGG 0.512546 tig0018389:-2163 Msa1365820:CDS
GCAACCGCTGAATGAGTTCA+CGG 0.514132 tig0018389:+4150 Msa1365820:intergenic
GGAAAAGAGCAAATAACATC+AGG 0.514810 tig0018389:+2114 Msa1365820:intergenic
TATTACCCACATGGCCATCA+TGG 0.515918 tig0018389:-4507 Msa1365820:CDS
TAAAGACAGAGAAAGAGAAA+GGG 0.520963 tig0018389:+5563 Msa1365820:intergenic
TAAAAGAGGAGGAGCAGTTG+TGG 0.521848 tig0018389:+5625 Msa1365820:intergenic
AAAGAAAAGAAAAGAAGGAA+TGG 0.525650 tig0018389:+5522 Msa1365820:intergenic
TACTTGAAGTAATTGATGCC+AGG 0.527444 tig0018389:-3702 Msa1365820:intron
CAGGAAGTTTGTTGGTCATG+CGG 0.529886 tig0018389:+2078 Msa1365820:intergenic
ACAAACCTGTTGATGCTGAA+TGG 0.529895 tig0018389:-2737 Msa1365820:CDS
AGTGGTAGGAGAAAGAGTGA+TGG 0.530434 tig0018389:-5097 Msa1365820:CDS
TCAAGGGGTCCAGACATTGT+AGG 0.532137 tig0018389:+5370 Msa1365820:intergenic
CACTATACCAAAACTAAAGT+GGG 0.534684 tig0018389:-5650 Msa1365820:five_prime_UTR
CTTCCTTGTCTACACCATGA+TGG 0.535434 tig0018389:+4493 Msa1365820:intergenic
AAGTACAACTGTGATCGTGC+TGG 0.536156 tig0018389:+1304 Msa1365820:intergenic
AGCTGATGAAAGGGTAAAAG+AGG 0.537928 tig0018389:+5611 Msa1365820:intergenic
GTTGAATGCTGCGGTCTGCC+GGG 0.538487 tig0018389:-1856 Msa1365820:CDS
TGAGGATGTTAGAGATGTTG+AGG 0.541292 tig0018389:-5053 Msa1365820:CDS
ACTGCCTGCAGCTGATGAAA+GGG 0.541563 tig0018389:+5602 Msa1365820:intergenic
CTCTCTACGAAGCGTTAATG+AGG 0.542826 tig0018389:-1543 Msa1365820:CDS
TCATGCGGCAAGCAACTTGA+CGG 0.543728 tig0018389:+2093 Msa1365820:intergenic
TCCCTCGTCTGCACAAGAGC+AGG 0.544804 tig0018389:+3566 Msa1365820:intergenic
CTGACATGCTACAATGGAGA+AGG 0.546074 tig0018389:-4797 Msa1365820:CDS
TGGTGCTGACACCATTATGC+AGG 0.547549 tig0018389:-4769 Msa1365820:intron
CTCTTAGAAAGAAGAGTGGT+AGG 0.547857 tig0018389:-5111 Msa1365820:CDS
GATGCCTTAGATCTGATAAA+GGG 0.549117 tig0018389:-3542 Msa1365820:CDS
ATCTGAAATGCCTTACGAGA+AGG 0.553009 tig0018389:-1886 Msa1365820:CDS
CAGGCTAAGATAGCAGGAAA+GGG 0.556007 tig0018389:-2807 Msa1365820:CDS
CTCACACCTTAAAAGGTTGG+TGG 0.556112 tig0018389:-2689 Msa1365820:CDS
TGATCCGAACAAACTGATGC+AGG 0.556119 tig0018389:-4436 Msa1365820:CDS
GAAGTTATGCTAACATGTCT+GGG 0.556151 tig0018389:-2785 Msa1365820:CDS
GCCCTGGATTTAGACTGTTG+TGG 0.562110 tig0018389:-3895 Msa1365820:CDS
TCAGGCTAAGATAGCAGGAA+AGG 0.562842 tig0018389:-2808 Msa1365820:intron
TACCTGCTCTTGTGCAGACG+AGG 0.562861 tig0018389:-3568 Msa1365820:CDS
AGTATCATACTATCATCATA+GGG 0.563052 tig0018389:+5699 Msa1365820:intergenic
AGGATCAAGAAAAGACTTGA+CGG 0.565906 tig0018389:+3868 Msa1365820:intergenic
CATCAGGAAGAAGGCAGCCA+GGG 0.566468 tig0018389:+2130 Msa1365820:intergenic
CAAATGTTTATCATAAATGC+CGG 0.567049 tig0018389:-3917 Msa1365820:CDS
AGTACAACTGTGATCGTGCT+GGG 0.568944 tig0018389:+1305 Msa1365820:intergenic
CAGTGGATAGAGTTACAACA+TGG 0.568948 tig0018389:+1261 Msa1365820:intergenic
GTAAAGGTTCTCAACAGTGA+AGG 0.571005 tig0018389:-3366 Msa1365820:CDS
GCTTGCTTACATAGACCGCC+AGG 0.573707 tig0018389:-1509 Msa1365820:CDS
TCCAGAAGGAGTTAAAGCTC+GGG 0.574655 tig0018389:-2162 Msa1365820:CDS
GGTTCTCAACAGTGAAGGGA+AGG 0.575465 tig0018389:-3361 Msa1365820:CDS
GACTTACTTCCTCACGAACA+GGG 0.576560 tig0018389:+3086 Msa1365820:intergenic
TAAAGGTTCTCAACAGTGAA+GGG 0.579543 tig0018389:-3365 Msa1365820:CDS
CAACAGTCTAAATCCAGGGC+CGG 0.582978 tig0018389:+3898 Msa1365820:intergenic
CTGTTGATGCTGAATGGAAG+AGG 0.584003 tig0018389:-2731 Msa1365820:CDS
AGGTCTAGCGAAACGATCAA+GGG 0.584638 tig0018389:+5354 Msa1365820:intergenic
CTTGCACTATTGCTGCAAAG+AGG 0.584915 tig0018389:-4341 Msa1365820:CDS
AACATACAAAACACTCCAGA+AGG 0.585254 tig0018389:-2176 Msa1365820:CDS
CAACCGCTGAATGAGTTCAC+GGG 0.585454 tig0018389:+4151 Msa1365820:intergenic
TTAGATCTGATAAAGGGCCA+TGG 0.586575 tig0018389:-3536 Msa1365820:CDS
ACTCATTCAGCGGTTGCAGA+AGG 0.587086 tig0018389:-4144 Msa1365820:CDS
AGAGTTACCATTGGGTATCG+TGG 0.589722 tig0018389:+3321 Msa1365820:intergenic
AGGGGTCCAGACATTGTAGG+AGG 0.593227 tig0018389:+5373 Msa1365820:intergenic
GGTCTCACACCTTAAAAGGT+TGG 0.598631 tig0018389:-2692 Msa1365820:CDS
ATACATCTACTGCCGAATCA+GGG 0.600440 tig0018389:-3171 Msa1365820:CDS
GCGGGCAAGACAAGTAGTAA+AGG 0.600575 tig0018389:-3382 Msa1365820:CDS
ACTACTTGTCTTGCCCGCCG+TGG 0.608753 tig0018389:+3387 Msa1365820:intergenic
AACTCTCGAGACAACAAACA+TGG 0.609861 tig0018389:-2018 Msa1365820:CDS
CAGCGGTTGCAGAAGGTCGA+CGG 0.610486 tig0018389:-4137 Msa1365820:CDS
TTTGCAGCAATAGTGCAAGC+AGG 0.612016 tig0018389:+4345 None:intergenic
AAAGACAGAGAAAGAGAAAG+GGG 0.618292 tig0018389:+5564 None:intergenic
TCCTTGAACATCTAAGATTG+TGG 0.621262 tig0018389:+4302 None:intergenic
CCGCCAGGGAATGAAGAATG+AGG 0.622334 tig0018389:-5772 None:intergenic
TGCTCTTGTGCAGACGAGGG+AGG 0.624988 tig0018389:-3564 Msa1365820:CDS
TAGACTGACCCCTGTTCGTG+AGG 0.627244 tig0018389:-3095 Msa1365820:CDS
AGAAAGATGCTCCACAGAGG+AGG 0.627660 tig0018389:-1336 Msa1365820:three_prime_UTR
ATGGTGTAGACAAGGAAGGA+AGG 0.628721 tig0018389:-4488 Msa1365820:CDS
AATCTTAGATGTTCAAGGAG+TGG 0.629525 tig0018389:-4298 Msa1365820:intron
TGCGAAGCCACGATACCCAA+TGG 0.631200 tig0018389:-3328 Msa1365820:intron
TGTGGGCTGACATGCTACAA+TGG 0.633693 tig0018389:-4803 Msa1365820:CDS
GGCGGAATTGTTGAATGCTG+CGG 0.635995 tig0018389:-1865 Msa1365820:CDS
CAATATTTGGAGATATTGTG+AGG 0.636519 tig0018389:-2926 Msa1365820:CDS
GGGAGAAACATCCTCCTCTG+TGG 0.636984 tig0018389:+1325 Msa1365820:intergenic
TGATGAAAGGGTAAAAGAGG+AGG 0.640882 tig0018389:+5614 Msa1365820:intergenic
TGGCCATCATGGTGTAGACA+AGG 0.641499 tig0018389:-4496 Msa1365820:CDS
TGACATGCTACAATGGAGAA+GGG 0.642619 tig0018389:-4796 Msa1365820:CDS
CATTCTCTTAGAAAGAAGAG+TGG 0.644440 tig0018389:-5115 Msa1365820:CDS
TCCACAACAGTCTAAATCCA+GGG 0.645024 tig0018389:+3894 Msa1365820:intergenic
ATTTCTCAAACTCTTGCACA+TGG 0.647962 tig0018389:+4385 Msa1365820:intergenic
CATCATGGTGTAGACAAGGA+AGG 0.648295 tig0018389:-4492 Msa1365820:CDS
ACCTGCTCTTGTGCAGACGA+GGG 0.649120 tig0018389:-3567 Msa1365820:CDS
GTATGATGAATATGTTCCAA+TGG 0.652365 tig0018389:-2763 Msa1365820:CDS
AACAAGCCAAGCACAGACAG+AGG 0.652528 tig0018389:-1982 Msa1365820:CDS
CTGCTTCCAAAGCATCCACC+CGG 0.654601 tig0018389:+1838 Msa1365820:intergenic
TGAAATGCCTTACGAGAAGG+CGG 0.658641 tig0018389:-1883 Msa1365820:CDS
GGGGTCCAGACATTGTAGGA+GGG 0.661895 tig0018389:+5374 Msa1365820:intergenic
TCTACACCATGATGGCCATG+TGG 0.666431 tig0018389:+4501 Msa1365820:intergenic
GCAACTTGGCTTCTTCCTGG+CGG 0.667045 tig0018389:+1494 Msa1365820:intergenic
TTCTCAATGGCGAACCACGG+CGG 0.670535 tig0018389:-3401 Msa1365820:CDS
TGGTTCTCAATGGCGAACCA+CGG 0.670544 tig0018389:-3404 Msa1365820:CDS
GAGTTACAACATGGGTACAA+CGG 0.675378 tig0018389:+1270 Msa1365820:intergenic
GAATGCTGCGGTCTGCCGGG+TGG 0.679946 tig0018389:-1853 Msa1365820:CDS
ACTTACTTCCTCACGAACAG+GGG 0.681063 tig0018389:+3087 Msa1365820:intergenic
CAGCCCGTGAACTCATTCAG+CGG 0.691924 tig0018389:-4154 Msa1365820:CDS
GGTCTAGCGAAACGATCAAG+GGG 0.694371 tig0018389:+5355 Msa1365820:intergenic
CTACACCATGATGGCCATGT+GGG 0.701290 tig0018389:+4502 Msa1365820:intergenic
AGAGGCAAACATCTCTACAG+AGG 0.704526 tig0018389:-2713 Msa1365820:CDS
GTTGTGAAGTATTACCCACA+TGG 0.705174 tig0018389:-4516 Msa1365820:CDS
GTACTAGGAGTAAAACTAAG+CGG 0.706669 tig0018389:-1229 Msa1365820:three_prime_UTR
AGTGGATAGAGTTACAACAT+GGG 0.742824 tig0018389:+1262 Msa1365820:intergenic
GATAGAAAGATGCTCCACAG+AGG 0.748082 tig0018389:-1339 Msa1365820:three_prime_UTR
GAGTTGCCGGAATTTCTCGG+AGG 0.755589 tig0018389:-3591 Msa1365820:CDS
CGACGGTGACAATTACCCCG+AGG 0.764728 tig0018389:-4120 Msa1365820:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTGTGTTTAATTATTAT+TGG - tig0018389:1944-1963 Msa1365820:CDS 10.0%
!! ATAAAAAAGAAAAGAAAAGA+AGG + tig0018389:1317-1336 Msa1365820:intergenic 15.0%
!!! TAAAATGCATATAGAATTTT+GGG - tig0018389:2085-2104 Msa1365820:CDS 15.0%
!!! TTTTTTATGAATCAATTTTC+AGG - tig0018389:2633-2652 Msa1365820:intron 15.0%
!!! TTTTTATGAATCAATTTTCA+GGG - tig0018389:2634-2653 Msa1365820:intron 15.0%
!! AATAAGAAGATTCATTAAAA+GGG + tig0018389:4190-4209 Msa1365820:intergenic 15.0%
!! AAATAAGAAGATTCATTAAA+AGG + tig0018389:4191-4210 Msa1365820:intergenic 15.0%
!!! TATTTTGTTAATTATGACAT+AGG - tig0018389:4261-4280 Msa1365820:intron 15.0%
!! TTCCAATCAAATTCAAATTA+GGG - tig0018389:1401-1420 Msa1365820:intron 20.0%
!!! TTGAATTTGTTCAATTTTTC+AGG - tig0018389:1563-1582 Msa1365820:intron 20.0%
!!! ACTTAAAGCTTTCTTTTTTA+AGG + tig0018389:1678-1697 Msa1365820:intergenic 20.0%
!!! GTAAAATGCATATAGAATTT+TGG - tig0018389:2084-2103 Msa1365820:CDS 20.0%
!! AAAAAACAAAACATTAGGTA+AGG + tig0018389:2261-2280 Msa1365820:intergenic 20.0%
!! TCAATAGAAAAGAAAAATCA+TGG + tig0018389:3167-3186 Msa1365820:intergenic 20.0%
!! TAAATAGCAATTTGTAGAAT+AGG + tig0018389:3775-3794 Msa1365820:intergenic 20.0%
!! ATAATAATAACTAATCTGAC+AGG - tig0018389:3805-3824 Msa1365820:intron 20.0%
!! TTTGCATGTAAATTTCAAAA+AGG - tig0018389:4451-4470 Msa1365820:CDS 20.0%
! AGTATCATACTATCATCATA+GGG + tig0018389:1135-1154 None:intergenic 25.0%
! TAGTATCATACTATCATCAT+AGG + tig0018389:1136-1155 None:intergenic 25.0%
! AAAGAAAAGAAAAGAAGGAA+TGG + tig0018389:1312-1331 Msa1365820:intergenic 25.0%
! CTTCCAATCAAATTCAAATT+AGG - tig0018389:1400-1419 Msa1365820:intron 25.0%
! AACCCTAATTTGAATTTGAT+TGG + tig0018389:1406-1425 Msa1365820:intergenic 25.0%
!!! TTCAATTTTTCAGGTTTTGA+GGG - tig0018389:1572-1591 Msa1365820:intron 25.0%
! ATGATTACCATATGATGTTA+AGG - tig0018389:1867-1886 Msa1365820:CDS 25.0%
! TTTCTGATGGTTAAATAACA+TGG - tig0018389:2131-2150 Msa1365820:CDS 25.0%
! AAATAACATGGAACAAGATA+TGG - tig0018389:2143-2162 Msa1365820:CDS 25.0%
!! TATGTTTAGATGGATGATTT+TGG - tig0018389:2176-2195 Msa1365820:CDS 25.0%
! GATGCAAAAAACAAAACATT+AGG + tig0018389:2266-2285 Msa1365820:intergenic 25.0%
!!! AATGTTTTGTTTTTTGCATC+AGG - tig0018389:2266-2285 Msa1365820:intron 25.0%
! AATTGAATGATTTCAAACCT+TGG + tig0018389:2600-2619 Msa1365820:intergenic 25.0%
! CTGACTTTGTAAAATTCTTA+AGG + tig0018389:2660-2679 Msa1365820:intergenic 25.0%
! CAAATGTTTATCATAAATGC+CGG - tig0018389:2914-2933 Msa1365820:CDS 25.0%
!! AATTTAAAACAGCTAGAAGA+TGG + tig0018389:3022-3041 Msa1365820:intergenic 25.0%
!! AATATTTCAGGATTTTTCCA+TGG + tig0018389:3315-3334 Msa1365820:intergenic 25.0%
! GAAAAATCCTGAAATATTGA+AGG - tig0018389:3317-3336 Msa1365820:intron 25.0%
!! TAGAACTATTTTGTCCAATT+GGG + tig0018389:4235-4254 Msa1365820:intergenic 25.0%
! ATTTACATGCAAATGAAATC+CGG + tig0018389:4444-4463 Msa1365820:intergenic 25.0%
!!! CTTTTTTACAAGTCAAAGAA+TGG + tig0018389:4509-4528 Msa1365820:intergenic 25.0%
! AGAGTTAATTGCTACTAAAA+AGG - tig0018389:5014-5033 Msa1365820:CDS 25.0%
! TTAATTGCTACTAAAAAGGT+AGG - tig0018389:5018-5037 Msa1365820:CDS 25.0%
! TTGAAGATAGTAAGAATAAG+AGG + tig0018389:5132-5151 Msa1365820:intergenic 25.0%
! TCCAGAAAAATCAAATGTTA+GGG + tig0018389:5257-5276 Msa1365820:intergenic 25.0%
! ATCCAGAAAAATCAAATGTT+AGG + tig0018389:5258-5277 Msa1365820:intergenic 25.0%
!! TAGCAAAGCTAACATTTTAA+AGG - tig0018389:5385-5404 Msa1365820:exon 25.0%
!!! TTTTTGTTTGTCTTTGTATC+TGG - tig0018389:5695-5714 Msa1365820:five_prime_UTR 25.0%
ACACTATACCAAAACTAAAG+TGG - tig0018389:1180-1199 Msa1365820:three_prime_UTR 30.0%
CACTATACCAAAACTAAAGT+GGG - tig0018389:1181-1200 Msa1365820:three_prime_UTR 30.0%
TAAAGACAGAGAAAGAGAAA+GGG + tig0018389:1271-1290 Msa1365820:intergenic 30.0%
!!! TTTTGTTCTTCTTGTTGTTG+CGG + tig0018389:1375-1394 Msa1365820:intergenic 30.0%
!! AAATTGAAGAGGTACTTACA+AGG + tig0018389:1500-1519 Msa1365820:intergenic 30.0%
!!! GTTCAATTTTTCAGGTTTTG+AGG - tig0018389:1571-1590 Msa1365820:intron 30.0%
!!! TCAATTTTTCAGGTTTTGAG+GGG - tig0018389:1573-1592 Msa1365820:intron 30.0%
TTGAGAATTCAGAAGATGAA+AGG - tig0018389:1636-1655 Msa1365820:intron 30.0%
!!! CTTTTTTAAGGATCCAATTC+TGG + tig0018389:1666-1685 Msa1365820:intergenic 30.0%
TCTAAGAGAATGCTTAAACT+TGG + tig0018389:1708-1727 Msa1365820:intergenic 30.0%
! TTTGTAGATTTCTGAAAGCA+AGG - tig0018389:1977-1996 Msa1365820:CDS 30.0%
TTGAAAAAGCAAAGCATATG+TGG - tig0018389:2010-2029 Msa1365820:CDS 30.0%
TGAAAAAGCAAAGCATATGT+GGG - tig0018389:2011-2030 Msa1365820:CDS 30.0%
! TATGCATTTTACCTGCATAA+TGG + tig0018389:2076-2095 Msa1365820:intergenic 30.0%
! GAACAAGATATGGACTTTTA+GGG - tig0018389:2153-2172 Msa1365820:CDS 30.0%
!!! ACTTTTAGGGTATGTTTAGA+TGG - tig0018389:2166-2185 Msa1365820:CDS 30.0%
! TTTAGATGGATGATTTTGGA+GGG - tig0018389:2180-2199 Msa1365820:CDS 30.0%
TAAGGCAATCAATTACTTCA+GGG + tig0018389:2243-2262 Msa1365820:intergenic 30.0%
CCAAGTCTTTCAATATAAAC+AGG + tig0018389:2369-2388 Msa1365820:intergenic 30.0%
CCTGTTTATATTGAAAGACT+TGG - tig0018389:2366-2385 Msa1365820:intron 30.0%
! AGTGTGATATAACTAGGTTT+TGG - tig0018389:2825-2844 Msa1365820:intron 30.0%
AAAAACAGTAATCACACTGT+GGG + tig0018389:2870-2889 Msa1365820:intergenic 30.0%
AAAAAACAGTAATCACACTG+TGG + tig0018389:2871-2890 Msa1365820:intergenic 30.0%
CGGCATTTATGATAAACATT+TGG + tig0018389:2916-2935 Msa1365820:intergenic 30.0%
CATATGACCTTCAATATTTC+AGG + tig0018389:3327-3346 Msa1365820:intergenic 30.0%
!! GTGTTTACACTTTTTGTAGA+TGG - tig0018389:3407-3426 Msa1365820:CDS 30.0%
! TTTTTGTAGATGGTTCTCAA+TGG - tig0018389:3417-3436 Msa1365820:intron 30.0%
! AAATATGTGAAGCACCAAAT+TGG + tig0018389:3570-3589 Msa1365820:intergenic 30.0%
ACATAGTGAAAAAAAGACCT+TGG - tig0018389:3862-3881 Msa1365820:CDS 30.0%
CACAATATCTCCAAATATTG+TGG + tig0018389:3905-3924 Msa1365820:intergenic 30.0%
CAATATTTGGAGATATTGTG+AGG - tig0018389:3905-3924 Msa1365820:CDS 30.0%
AAAGAGAAAATTCTCTGAAC+AGG + tig0018389:3963-3982 Msa1365820:intergenic 30.0%
! TTCACATTCTGTTATTTGTC+AGG - tig0018389:4005-4024 Msa1365820:intron 30.0%
GTATGATGAATATGTTCCAA+TGG - tig0018389:4068-4087 Msa1365820:intron 30.0%
TCACTAAAATTTCACCCAAT+TGG - tig0018389:4218-4237 Msa1365820:intron 30.0%
! CTAGAACTATTTTGTCCAAT+TGG + tig0018389:4236-4255 Msa1365820:intergenic 30.0%
ATGCAAAATTGAGGTTGTAA+TGG + tig0018389:4325-4344 Msa1365820:intergenic 30.0%
! ATATTGTGCTATAGCCTTTT+TGG - tig0018389:4369-4388 Msa1365820:CDS 30.0%
! TATTGTGCTATAGCCTTTTT+GGG - tig0018389:4370-4389 Msa1365820:CDS 30.0%
TGGATCATTCATATAGTATC+CGG - tig0018389:4422-4441 Msa1365820:CDS 30.0%
! TTTCAAAAAGGCTTTTGATG+AGG - tig0018389:4463-4482 Msa1365820:CDS 30.0%
! TTCAAAAAGGCTTTTGATGA+GGG - tig0018389:4464-4483 Msa1365820:CDS 30.0%
! AAAAAAGAGTTCGAGCTTTT+AGG - tig0018389:4522-4541 Msa1365820:CDS 30.0%
TTCTCCAGCAAAAGTTTAAT+CGG - tig0018389:4602-4621 Msa1365820:intron 30.0%
! AAATCCGATTAAACTTTTGC+TGG + tig0018389:4609-4628 Msa1365820:intergenic 30.0%
TTTAATCGGATTTCCAATAC+AGG - tig0018389:4616-4635 Msa1365820:intron 30.0%
TCATCATTAGATGATATTGC+AGG + tig0018389:4775-4794 Msa1365820:intergenic 30.0%
ACATTAAGAAAGCGAAGTAA+TGG - tig0018389:5059-5078 Msa1365820:CDS 30.0%
! ATCAGAAAAAGAAGTTTTGC+TGG - tig0018389:5455-5474 Msa1365820:five_prime_UTR 30.0%
AAAGACAGAGAAAGAGAAAG+GGG + tig0018389:1270-1289 Msa1365820:intergenic 35.0%
CTAAAGACAGAGAAAGAGAA+AGG + tig0018389:1272-1291 Msa1365820:intergenic 35.0%
GCGAGAATTGAAAATTGAAG+AGG + tig0018389:1511-1530 Msa1365820:intergenic 35.0%
CATTCTCTTAGAAAGAAGAG+TGG - tig0018389:1716-1735 Msa1365820:intron 35.0%
!! TGTTAGCTCTGTTTCTATTG+AGG - tig0018389:1760-1779 Msa1365820:intron 35.0%
! TTTTCGTCAGTCTTTGATCA+TGG - tig0018389:1820-1839 Msa1365820:CDS 35.0%
TGGTAATCATCAAAAGCTTC+AGG + tig0018389:1857-1876 Msa1365820:intergenic 35.0%
ATGAGCACCTTAACATCATA+TGG + tig0018389:1877-1896 Msa1365820:intergenic 35.0%
!!! TTTGGGCTTTAGTTTTCGTT+TGG - tig0018389:2102-2121 Msa1365820:CDS 35.0%
! CGTTTGGTTTATGTTTCTGA+TGG - tig0018389:2118-2137 Msa1365820:CDS 35.0%
! GGAACAAGATATGGACTTTT+AGG - tig0018389:2152-2171 Msa1365820:CDS 35.0%
! GTTTAGATGGATGATTTTGG+AGG - tig0018389:2179-2198 Msa1365820:CDS 35.0%
!! TTAGATGGATGATTTTGGAG+GGG - tig0018389:2181-2200 Msa1365820:CDS 35.0%
GTAAGGCAATCAATTACTTC+AGG + tig0018389:2244-2263 Msa1365820:intergenic 35.0%
ATTTCTCAAACTCTTGCACA+TGG + tig0018389:2449-2468 Msa1365820:intergenic 35.0%
ACCACAATCTTAGATGTTCA+AGG - tig0018389:2528-2547 Msa1365820:intron 35.0%
! TCCTTGAACATCTAAGATTG+TGG + tig0018389:2532-2551 Msa1365820:intergenic 35.0%
AATCTTAGATGTTCAAGGAG+TGG - tig0018389:2533-2552 Msa1365820:intron 35.0%
! TTTTTGAACGCTACGTAACT+AGG - tig0018389:2772-2791 Msa1365820:CDS 35.0%
ACCTAGTTATATCACACTGT+GGG + tig0018389:2823-2842 Msa1365820:intergenic 35.0%
AACCTAGTTATATCACACTG+TGG + tig0018389:2824-2843 Msa1365820:intergenic 35.0%
AGGATCAAGAAAAGACTTGA+CGG + tig0018389:2966-2985 Msa1365820:intergenic 35.0%
!!! TGGATCTTTGAGGTTGTTTT+AGG + tig0018389:2986-3005 Msa1365820:intergenic 35.0%
TTAACTTACGTGGATCTTTG+AGG + tig0018389:2996-3015 Msa1365820:intergenic 35.0%
! AAGATGGCATTTAACTTACG+TGG + tig0018389:3006-3025 Msa1365820:intergenic 35.0%
GGAAACATTACTTAGGTTCT+TGG - tig0018389:3086-3105 Msa1365820:intron 35.0%
TACTTGAAGTAATTGATGCC+AGG - tig0018389:3129-3148 Msa1365820:CDS 35.0%
AATTGATGCCAGGTACATTA+TGG - tig0018389:3139-3158 Msa1365820:CDS 35.0%
GATGCCTTAGATCTGATAAA+GGG - tig0018389:3289-3308 Msa1365820:intron 35.0%
TGAAGGTCATATGCTATTCT+TGG - tig0018389:3334-3353 Msa1365820:CDS 35.0%
TAAAGGTTCTCAACAGTGAA+GGG - tig0018389:3466-3485 Msa1365820:intron 35.0%
TGATTGTTGCCTTAATCAAG+TGG - tig0018389:3542-3561 Msa1365820:CDS 35.0%
! AAATTGGCTCCACTTGATTA+AGG + tig0018389:3554-3573 Msa1365820:intergenic 35.0%
TTAATCAAGTGGAGCCAATT+TGG - tig0018389:3553-3572 Msa1365820:CDS 35.0%
! GCTTCACATATTTTTCTCAG+TGG - tig0018389:3577-3596 Msa1365820:CDS 35.0%
! GAATAGCTCTTCATTGCTTT+TGG + tig0018389:3710-3729 Msa1365820:intergenic 35.0%
TTGTTGCAGTCCACAATATT+TGG - tig0018389:3892-3911 Msa1365820:CDS 35.0%
GAAGTTATGCTAACATGTCT+GGG - tig0018389:4046-4065 Msa1365820:intron 35.0%
AAATTGAGGTTGTAATGGTG+TGG + tig0018389:4320-4339 Msa1365820:intergenic 35.0%
! ATTGTGCTATAGCCTTTTTG+GGG - tig0018389:4371-4390 Msa1365820:CDS 35.0%
! TCAAAAAGGCTTTTGATGAG+GGG - tig0018389:4465-4484 Msa1365820:CDS 35.0%
! GTGTTTTGTATGTTAGGAAG+AGG + tig0018389:4649-4668 Msa1365820:intergenic 35.0%
!! TCTGGAGTGTTTTGTATGTT+AGG + tig0018389:4655-4674 Msa1365820:intergenic 35.0%
AACATACAAAACACTCCAGA+AGG - tig0018389:4655-4674 Msa1365820:intron 35.0%
AGCAAATAACATCAGGAAGA+AGG + tig0018389:4713-4732 Msa1365820:intergenic 35.0%
GGAAAAGAGCAAATAACATC+AGG + tig0018389:4720-4739 Msa1365820:intergenic 35.0%
TGATATTGCAGGAAGTTTGT+TGG + tig0018389:4764-4783 Msa1365820:intergenic 35.0%
!! CCTAGATTTGTTACCAAAGA+CGG - tig0018389:5230-5249 Msa1365820:CDS 35.0%
!! CTAGATTTGTTACCAAAGAC+GGG - tig0018389:5231-5250 Msa1365820:CDS 35.0%
!! GCCCTAACATTTGATTTTTC+TGG - tig0018389:5253-5272 Msa1365820:intron 35.0%
! GATTTTTCTGGATTGTGCAT+AGG - tig0018389:5265-5284 Msa1365820:intron 35.0%
AGTGGATAGAGTTACAACAT+GGG + tig0018389:5572-5591 Msa1365820:intergenic 35.0%
GTACTAGGAGTAAAACTAAG+CGG - tig0018389:5602-5621 Msa1365820:five_prime_UTR 35.0%
!!! TGTATCTGGTTTGTTTTCCT+TGG - tig0018389:5709-5728 Msa1365820:five_prime_UTR 35.0%
! CAACTAAAGCTTTTCAACCA+AGG + tig0018389:5729-5748 Msa1365820:intergenic 35.0%
! GGTTGAAAAGCTTTAGTTGT+TGG - tig0018389:5730-5749 Msa1365820:five_prime_UTR 35.0%
!! TGTGGATCCCACTTTAGTTT+TGG + tig0018389:1191-1210 Msa1365820:intergenic 40.0%
TGATGAAAGGGTAAAAGAGG+AGG + tig0018389:1220-1239 Msa1365820:intergenic 40.0%
AGCTGATGAAAGGGTAAAAG+AGG + tig0018389:1223-1242 Msa1365820:intergenic 40.0%
TTGTAGGAGGGAGTTGAATT+AGG + tig0018389:1448-1467 Msa1365820:intergenic 40.0%
GATGAAAGGAGAACCAGAAT+TGG - tig0018389:1650-1669 Msa1365820:intron 40.0%
CTCTTAGAAAGAAGAGTGGT+AGG - tig0018389:1720-1739 Msa1365820:intron 40.0%
TGAGGATGTTAGAGATGTTG+AGG - tig0018389:1778-1797 Msa1365820:intron 40.0%
TGACATGCTACAATGGAGAA+GGG - tig0018389:2035-2054 Msa1365820:CDS 40.0%
CAAATCCAGGGATTTGGAAA+GGG + tig0018389:2214-2233 Msa1365820:intergenic 40.0%
TCAAATCCAGGGATTTGGAA+AGG + tig0018389:2215-2234 Msa1365820:intergenic 40.0%
TATGCTCAAATCCAGGGATT+TGG + tig0018389:2220-2239 Msa1365820:intergenic 40.0%
!!! GCATCAGGATTTTGAGTTCA+AGG - tig0018389:2281-2300 Msa1365820:intron 40.0%
! GTTGTGAAGTATTACCCACA+TGG - tig0018389:2315-2334 Msa1365820:intron 40.0%
! GTAACCTGCATCAGTTTGTT+CGG + tig0018389:2402-2421 Msa1365820:intergenic 40.0%
ACTGATGCAGGTTACAACTA+TGG - tig0018389:2407-2426 Msa1365820:intron 40.0%
ACTGTGGGAATAGTAACAGT+TGG + tig0018389:2808-2827 Msa1365820:intergenic 40.0%
TCCCACAGTGTGATATAACT+AGG - tig0018389:2819-2838 Msa1365820:intron 40.0%
ACTGTGGGAATAGTAACAGT+TGG + tig0018389:2808-2827 Msa1365820:intergenic 40.0%
TCCACAACAGTCTAAATCCA+GGG + tig0018389:2940-2959 Msa1365820:intergenic 40.0%
TAATGTTTCCCACCAAGCAT+CGG + tig0018389:3076-3095 Msa1365820:intergenic 40.0%
CTTGGTGGGAAACATTACTT+AGG - tig0018389:3079-3098 Msa1365820:intron 40.0%
AGTGCGCAATGTGTTAAGTT+AGG + tig0018389:3211-3230 Msa1365820:intergenic 40.0%
CACTTAATGTAGTGAGTTGC+CGG - tig0018389:3227-3246 Msa1365820:intron 40.0%
GGATGCCTTAGATCTGATAA+AGG - tig0018389:3288-3307 Msa1365820:intron 40.0%
ATGGCCCTTTATCAGATCTA+AGG + tig0018389:3296-3315 Msa1365820:intergenic 40.0%
TTAGATCTGATAAAGGGCCA+TGG - tig0018389:3295-3314 Msa1365820:intron 40.0%
! ATACCCGTCTGACTTGTAAT+AGG - tig0018389:3371-3390 Msa1365820:CDS 40.0%
TCAGCCTATTACAAGTCAGA+CGG + tig0018389:3378-3397 Msa1365820:intergenic 40.0%
GTAAAGGTTCTCAACAGTGA+AGG - tig0018389:3465-3484 Msa1365820:intron 40.0%
! TTTTGTTACTCTCACCGAAC+AGG - tig0018389:3625-3644 Msa1365820:intron 40.0%
! ATCGCTTCCTTTTACCTGTT+CGG + tig0018389:3642-3661 Msa1365820:intergenic 40.0%
ATACATCTACTGCCGAATCA+GGG - tig0018389:3660-3679 Msa1365820:intron 40.0%
ACTAATCTGACAGGACATTG+TGG - tig0018389:3814-3833 Msa1365820:intron 40.0%
ACTGCAACAAACAACAACCA+AGG + tig0018389:3882-3901 Msa1365820:intergenic 40.0%
ATTTGTCAGGCTAAGATAGC+AGG - tig0018389:4018-4037 Msa1365820:intron 40.0%
GGAAGTTATGCTAACATGTC+TGG - tig0018389:4045-4064 Msa1365820:intron 40.0%
TCAACAGGTTTGTCTACCAT+TGG + tig0018389:4087-4106 Msa1365820:intergenic 40.0%
ACAAACCTGTTGATGCTGAA+TGG - tig0018389:4094-4113 Msa1365820:intron 40.0%
! AAGAAGCCACCAACCTTTTA+AGG + tig0018389:4151-4170 Msa1365820:intergenic 40.0%
!! TTAAAAGGTTGGTGGCTTCT+TGG - tig0018389:4150-4169 Msa1365820:CDS 40.0%
! CAACCTCAATTTTGCATTCG+TGG - tig0018389:4328-4347 Msa1365820:CDS 40.0%
CAACCACGAATGCAAAATTG+AGG + tig0018389:4334-4353 Msa1365820:intergenic 40.0%
! TCCACGCTGATTGACAATTA+TGG - tig0018389:4402-4421 Msa1365820:CDS 40.0%
TCCATAATTGTCAATCAGCG+TGG + tig0018389:4406-4425 Msa1365820:intergenic 40.0%
! CAAAAAGGCTTTTGATGAGG+GGG - tig0018389:4466-4485 Msa1365820:CDS 40.0%
! TAGTGCTTGATAGCATTGCT+TGG - tig0018389:4550-4569 Msa1365820:intron 40.0%
!! ATGTTTGTTGTCTCGAGAGT+TGG + tig0018389:4814-4833 Msa1365820:intergenic 40.0%
AACTCTCGAGACAACAAACA+TGG - tig0018389:4813-4832 Msa1365820:CDS 40.0%
! TTCTCGTAAGGCATTTCAGA+TGG + tig0018389:4946-4965 Msa1365820:intergenic 40.0%
! ATCTGAAATGCCTTACGAGA+AGG - tig0018389:4945-4964 Msa1365820:intron 40.0%
!!! CATGCCATTTTAGCAAGAAG+CGG + tig0018389:5177-5196 Msa1365820:intergenic 40.0%
! CCGTCTTTGGTAACAAATCT+AGG + tig0018389:5233-5252 Msa1365820:intergenic 40.0%
! AGTTTTGCTGGTGAGCTATA+TGG - tig0018389:5467-5486 Msa1365820:five_prime_UTR 40.0%
GAGTTACAACATGGGTACAA+CGG + tig0018389:5564-5583 Msa1365820:intergenic 40.0%
CAGTGGATAGAGTTACAACA+TGG + tig0018389:5573-5592 Msa1365820:intergenic 40.0%
CCTAGTACACTGAAAAACAG+TGG + tig0018389:5590-5609 Msa1365820:intergenic 40.0%
!! CCACTGTTTTTCAGTGTACT+AGG - tig0018389:5587-5606 Msa1365820:five_prime_UTR 40.0%
AGCTAGCAAAGATGCTATTC+TGG + tig0018389:5653-5672 Msa1365820:intergenic 40.0%
TTCTTGCTTATCTTGTCCAC+TGG - tig0018389:5759-5778 Msa1365820:five_prime_UTR 40.0%
TAAAAGAGGAGGAGCAGTTG+TGG + tig0018389:1209-1228 Msa1365820:intergenic 45.0%
TTTACCCTTTCATCAGCTGC+AGG - tig0018389:1225-1244 Msa1365820:three_prime_UTR 45.0%
AGGTCTAGCGAAACGATCAA+GGG + tig0018389:1480-1499 Msa1365820:intergenic 45.0%
AAGGTCTAGCGAAACGATCA+AGG + tig0018389:1481-1500 Msa1365820:intergenic 45.0%
!!! TCAGGTTTTGAGGGGTTTTC+TGG - tig0018389:1581-1600 Msa1365820:intron 45.0%
AGTGGTAGGAGAAAGAGTGA+TGG - tig0018389:1734-1753 Msa1365820:intron 45.0%
CTGACATGCTACAATGGAGA+AGG - tig0018389:2034-2053 Msa1365820:CDS 45.0%
CTACAATGGAGAAGGGAGTT+TGG - tig0018389:2042-2061 Msa1365820:CDS 45.0%
TCAGGGTATGCTCAAATCCA+GGG + tig0018389:2226-2245 Msa1365820:intergenic 45.0%
TTCAGGGTATGCTCAAATCC+AGG + tig0018389:2227-2246 Msa1365820:intergenic 45.0%
TATTACCCACATGGCCATCA+TGG - tig0018389:2324-2343 Msa1365820:intron 45.0%
CTTCCTTGTCTACACCATGA+TGG + tig0018389:2341-2360 Msa1365820:intergenic 45.0%
CATCATGGTGTAGACAAGGA+AGG - tig0018389:2339-2358 Msa1365820:intron 45.0%
ATGGTGTAGACAAGGAAGGA+AGG - tig0018389:2343-2362 Msa1365820:intron 45.0%
TGATCCGAACAAACTGATGC+AGG - tig0018389:2395-2414 Msa1365820:intron 45.0%
TTTGCAGCAATAGTGCAAGC+AGG + tig0018389:2489-2508 Msa1365820:intergenic 45.0%
CTTGCACTATTGCTGCAAAG+AGG - tig0018389:2490-2509 Msa1365820:intron 45.0%
GCTTTCAGTTGAACGCAAAG+AGG + tig0018389:2578-2597 Msa1365820:intergenic 45.0%
TTGCGTTCAACTGAAAGCCA+AGG - tig0018389:2580-2599 Msa1365820:intron 45.0%
ACAATGAGATATCGCACCTC+GGG + tig0018389:2730-2749 Msa1365820:intergenic 45.0%
GACAATGAGATATCGCACCT+CGG + tig0018389:2731-2750 Msa1365820:intergenic 45.0%
TTTATCATAAATGCCGGCCC+TGG - tig0018389:2920-2939 Msa1365820:CDS 45.0%
CTCCACAACAGTCTAAATCC+AGG + tig0018389:2941-2960 Msa1365820:intergenic 45.0%
AATGTTTCCCACCAAGCATC+GGG + tig0018389:3075-3094 Msa1365820:intergenic 45.0%
TCATGGAGCCATAATGTACC+TGG + tig0018389:3150-3169 Msa1365820:intergenic 45.0%
AGTGAGTTGCCGGAATTTCT+CGG - tig0018389:3237-3256 Msa1365820:intron 45.0%
CAGCCTATTACAAGTCAGAC+GGG + tig0018389:3377-3396 Msa1365820:intergenic 45.0%
! AGAGTTACCATTGGGTATCG+TGG + tig0018389:3513-3532 Msa1365820:intergenic 45.0%
CCATGCGAAGAGTTACCATT+GGG + tig0018389:3521-3540 Msa1365820:intergenic 45.0%
ACTCTCACCGAACAGGTAAA+AGG - tig0018389:3632-3651 Msa1365820:intron 45.0%
GATACATCTACTGCCGAATC+AGG - tig0018389:3659-3678 Msa1365820:intron 45.0%
TTCAGCTTCTGACCCTGATT+CGG + tig0018389:3675-3694 Msa1365820:intergenic 45.0%
ACTTACTTCCTCACGAACAG+GGG + tig0018389:3747-3766 Msa1365820:intergenic 45.0%
GACTTACTTCCTCACGAACA+GGG + tig0018389:3748-3767 Msa1365820:intergenic 45.0%
AGACTTACTTCCTCACGAAC+AGG + tig0018389:3749-3768 Msa1365820:intergenic 45.0%
TCAGGCTAAGATAGCAGGAA+AGG - tig0018389:4023-4042 Msa1365820:intron 45.0%
CAGGCTAAGATAGCAGGAAA+GGG - tig0018389:4024-4043 Msa1365820:intron 45.0%
CTCTTCCATTCAGCATCAAC+AGG + tig0018389:4102-4121 Msa1365820:intergenic 45.0%
CTGTTGATGCTGAATGGAAG+AGG - tig0018389:4100-4119 Msa1365820:intron 45.0%
AGAGGCAAACATCTCTACAG+AGG - tig0018389:4118-4137 Msa1365820:intron 45.0%
CAGAGGTCTCACACCTTAAA+AGG - tig0018389:4135-4154 Msa1365820:CDS 45.0%
GGTCTCACACCTTAAAAGGT+TGG - tig0018389:4139-4158 Msa1365820:CDS 45.0%
CTCACACCTTAAAAGGTTGG+TGG - tig0018389:4142-4161 Msa1365820:CDS 45.0%
TTGCATTCGTGGTTGCAGTA+CGG - tig0018389:4339-4358 Msa1365820:CDS 45.0%
!!! TGCTATAGCCTTTTTGGGGT+TGG - tig0018389:4375-4394 Msa1365820:CDS 45.0%
AAGAGGACGTGTTCCTGTAT+TGG + tig0018389:4632-4651 Msa1365820:intergenic 45.0%
CTCCAGAAGGAGTTAAAGCT+CGG - tig0018389:4668-4687 Msa1365820:intron 45.0%
TCCAGAAGGAGTTAAAGCTC+GGG - tig0018389:4669-4688 Msa1365820:intron 45.0%
AAGGAGTTAAAGCTCGGGTT+TGG - tig0018389:4674-4693 Msa1365820:intron 45.0%
AGGAGTTAAAGCTCGGGTTT+GGG - tig0018389:4675-4694 Msa1365820:intron 45.0%
!! CAGGAAGTTTGTTGGTCATG+CGG + tig0018389:4756-4775 Msa1365820:intergenic 45.0%
! GATTTTCCTCTGTCTGTGCT+TGG + tig0018389:4858-4877 Msa1365820:intergenic 45.0%
TCTTTCCCTCCTTGCTGAAA+AGG - tig0018389:4878-4897 Msa1365820:intron 45.0%
! CCTAACCTTTTCAGCAAGGA+GGG + tig0018389:4886-4905 Msa1365820:intergenic 45.0%
! ACCTAACCTTTTCAGCAAGG+AGG + tig0018389:4887-4906 Msa1365820:intergenic 45.0%
! CTCACCTAACCTTTTCAGCA+AGG + tig0018389:4890-4909 Msa1365820:intergenic 45.0%
GTTAGGTGAGCTTGAAGAGA+AGG - tig0018389:4900-4919 Msa1365820:intron 45.0%
TGAAATGCCTTACGAGAAGG+CGG - tig0018389:4948-4967 Msa1365820:intron 45.0%
AACAATTCCGCCTTCTCGTA+AGG + tig0018389:4958-4977 Msa1365820:intergenic 45.0%
GTCACCGCTTCTTGCTAAAA+TGG - tig0018389:5170-5189 Msa1365820:CDS 45.0%
CGCTTCTTGCTAAAATGGCA+TGG - tig0018389:5175-5194 Msa1365820:CDS 45.0%
! CTCTCTACGAAGCGTTAATG+AGG - tig0018389:5288-5307 Msa1365820:intron 45.0%
AAGCCAAGTTGCGAGTAAGT+TGG - tig0018389:5348-5367 Msa1365820:intron 45.0%
ATGCCAACTTACTCGCAACT+TGG + tig0018389:5354-5373 Msa1365820:intergenic 45.0%
GATAGAAAGATGCTCCACAG+AGG - tig0018389:5492-5511 Msa1365820:five_prime_UTR 45.0%
AGTACAACTGTGATCGTGCT+GGG + tig0018389:5529-5548 Msa1365820:intergenic 45.0%
AAGTACAACTGTGATCGTGC+TGG + tig0018389:5530-5549 Msa1365820:intergenic 45.0%
ACTGCCTGCAGCTGATGAAA+GGG + tig0018389:1232-1251 Msa1365820:intergenic 50.0%
CAACTCCCTCCTACAATGTC+TGG - tig0018389:1452-1471 Msa1365820:intron 50.0%
TCAAGGGGTCCAGACATTGT+AGG + tig0018389:1464-1483 Msa1365820:intergenic 50.0%
GGTCTAGCGAAACGATCAAG+GGG + tig0018389:1479-1498 Msa1365820:intergenic 50.0%
! TGTGGGCTGACATGCTACAA+TGG - tig0018389:2028-2047 Msa1365820:CDS 50.0%
!! TGGTGCTGACACCATTATGC+AGG - tig0018389:2062-2081 Msa1365820:CDS 50.0%
AGCTTCCCTTTCCAAATCCC+TGG - tig0018389:2206-2225 Msa1365820:intron 50.0%
CTACACCATGATGGCCATGT+GGG + tig0018389:2332-2351 Msa1365820:intergenic 50.0%
TCTACACCATGATGGCCATG+TGG + tig0018389:2333-2352 Msa1365820:intergenic 50.0%
TGGCCATCATGGTGTAGACA+AGG - tig0018389:2335-2354 Msa1365820:intron 50.0%
CAACCGCTGAATGAGTTCAC+GGG + tig0018389:2683-2702 Msa1365820:intergenic 50.0%
GCAACCGCTGAATGAGTTCA+CGG + tig0018389:2684-2703 Msa1365820:intergenic 50.0%
ACTCATTCAGCGGTTGCAGA+AGG - tig0018389:2687-2706 Msa1365820:CDS 50.0%
CAATGAGATATCGCACCTCG+GGG + tig0018389:2729-2748 Msa1365820:intergenic 50.0%
CAACAGTCTAAATCCAGGGC+CGG + tig0018389:2936-2955 Msa1365820:intergenic 50.0%
GCCCTGGATTTAGACTGTTG+TGG - tig0018389:2936-2955 Msa1365820:intron 50.0%
CAGGTACCTCCGAGAAATTC+CGG + tig0018389:3249-3268 Msa1365820:intergenic 50.0%
TGGTTCTCAATGGCGAACCA+CGG - tig0018389:3427-3446 Msa1365820:intron 50.0%
GCGGGCAAGACAAGTAGTAA+AGG - tig0018389:3449-3468 Msa1365820:intron 50.0%
GGTTCTCAACAGTGAAGGGA+AGG - tig0018389:3470-3489 Msa1365820:intron 50.0%
CCCAATGGTAACTCTTCGCA+TGG - tig0018389:3518-3537 Msa1365820:CDS 50.0%
GCCATGCGAAGAGTTACCAT+TGG + tig0018389:3522-3541 Msa1365820:intergenic 50.0%
TGGAGTAGCCAACCCCAAAA+AGG + tig0018389:4386-4405 Msa1365820:intergenic 50.0%
TTGATGAGGGGGTCTGTTAG+AGG - tig0018389:4477-4496 Msa1365820:CDS 50.0%
! ACCCGAGCTTTAACTCCTTC+TGG + tig0018389:4673-4692 Msa1365820:intergenic 50.0%
TCATGCGGCAAGCAACTTGA+CGG + tig0018389:4741-4760 Msa1365820:intergenic 50.0%
!! GTCTGTGCTTGGCTTGTTGA+AGG + tig0018389:4847-4866 Msa1365820:intergenic 50.0%
AACAAGCCAAGCACAGACAG+AGG - tig0018389:4849-4868 Msa1365820:CDS 50.0%
CCCTCCTTGCTGAAAAGGTT+AGG - tig0018389:4883-4902 Msa1365820:intron 50.0%
GGCGGAATTGTTGAATGCTG+CGG - tig0018389:4966-4985 Msa1365820:CDS 50.0%
CAAATGTTAGGGCCCGTCTT+TGG + tig0018389:5246-5265 Msa1365820:intergenic 50.0%
AGAAAGATGCTCCACAGAGG+AGG - tig0018389:5495-5514 Msa1365820:five_prime_UTR 50.0%
CACTGCCTGCAGCTGATGAA+AGG + tig0018389:1233-1252 Msa1365820:intergenic 55.0%
GGGGTCCAGACATTGTAGGA+GGG + tig0018389:1460-1479 Msa1365820:intergenic 55.0%
AGGGGTCCAGACATTGTAGG+AGG + tig0018389:1461-1480 Msa1365820:intergenic 55.0%
CAGCCCGTGAACTCATTCAG+CGG - tig0018389:2677-2696 Msa1365820:intron 55.0%
TGCTGACATTGCCCGATGCT+TGG - tig0018389:3061-3080 Msa1365820:intron 55.0%
TGACATTGCCCGATGCTTGG+TGG - tig0018389:3064-3083 Msa1365820:intron 55.0%
GACATTGCCCGATGCTTGGT+GGG - tig0018389:3065-3084 Msa1365820:intron 55.0%
GAGTTGCCGGAATTTCTCGG+AGG - tig0018389:3240-3259 Msa1365820:intron 55.0%
TACCTGCTCTTGTGCAGACG+AGG - tig0018389:3263-3282 Msa1365820:intron 55.0%
ACCTGCTCTTGTGCAGACGA+GGG - tig0018389:3264-3283 Msa1365820:intron 55.0%
TTCTCAATGGCGAACCACGG+CGG - tig0018389:3430-3449 Msa1365820:intron 55.0%
TGCGAAGCCACGATACCCAA+TGG - tig0018389:3503-3522 Msa1365820:intron 55.0%
CACGAACAGGGGTCAGTCTA+AGG + tig0018389:3736-3755 Msa1365820:intergenic 55.0%
TAGACTGACCCCTGTTCGTG+AGG - tig0018389:3736-3755 Msa1365820:intron 55.0%
CATCAGGAAGAAGGCAGCCA+GGG + tig0018389:4704-4723 Msa1365820:intergenic 55.0%
ACATCAGGAAGAAGGCAGCC+AGG + tig0018389:4705-4724 Msa1365820:intergenic 55.0%
TGTTGAATGCTGCGGTCTGC+CGG - tig0018389:4974-4993 Msa1365820:CDS 55.0%
! CTGCTTCCAAAGCATCCACC+CGG + tig0018389:4996-5015 Msa1365820:intergenic 55.0%
GCTTGCTTACATAGACCGCC+AGG - tig0018389:5322-5341 Msa1365820:intron 55.0%
GCAACTTGGCTTCTTCCTGG+CGG + tig0018389:5340-5359 Msa1365820:intergenic 55.0%
CTCGCAACTTGGCTTCTTCC+TGG + tig0018389:5343-5362 Msa1365820:intergenic 55.0%
GGGAGAAACATCCTCCTCTG+TGG + tig0018389:5509-5528 Msa1365820:intergenic 55.0%
CAGCGGTTGCAGAAGGTCGA+CGG - tig0018389:2694-2713 Msa1365820:CDS 60.0%
CGACGGTGACAATTACCCCG+AGG - tig0018389:2711-2730 Msa1365820:CDS 60.0%
TCCCTCGTCTGCACAAGAGC+AGG + tig0018389:3268-3287 Msa1365820:intergenic 60.0%
TGCTCTTGTGCAGACGAGGG+AGG - tig0018389:3267-3286 Msa1365820:intron 60.0%
TCTCAATGGCGAACCACGGC+GGG - tig0018389:3431-3450 Msa1365820:intron 60.0%
ACTACTTGTCTTGCCCGCCG+TGG + tig0018389:3447-3466 Msa1365820:intergenic 60.0%
GTTGAATGCTGCGGTCTGCC+GGG - tig0018389:4975-4994 Msa1365820:CDS 60.0%
AGCTCGGGTTTGGGTAGCCC+TGG - tig0018389:4684-4703 Msa1365820:intron 65.0%
GGTCTGCCGGGTGGATGCTT+TGG - tig0018389:4987-5006 Msa1365820:CDS 65.0%
GAATGCTGCGGTCTGCCGGG+TGG - tig0018389:4978-4997 Msa1365820:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0018389 gene 1063 5790 1063 ID=Msa1365820;Name=Msa1365820
tig0018389 mRNA 1063 5790 1063 ID=Msa1365820-mRNA-1;Parent=Msa1365820;Name=Msa1365820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=404|0.85|0.86|1|1|1|15|310|643
tig0018389 exon 1063 1393 1063 ID=Msa1365820-mRNA-1:exon:14854;Parent=Msa1365820-mRNA-1
tig0018389 exon 1492 1566 1492 ID=Msa1365820-mRNA-1:exon:14853;Parent=Msa1365820-mRNA-1
tig0018389 exon 1818 2215 1818 ID=Msa1365820-mRNA-1:exon:14852;Parent=Msa1365820-mRNA-1
tig0018389 exon 2682 2826 2682 ID=Msa1365820-mRNA-1:exon:14851;Parent=Msa1365820-mRNA-1
tig0018389 exon 2908 2952 2908 ID=Msa1365820-mRNA-1:exon:14850;Parent=Msa1365820-mRNA-1
tig0018389 exon 3093 3206 3093 ID=Msa1365820-mRNA-1:exon:14849;Parent=Msa1365820-mRNA-1
tig0018389 exon 3329 3427 3329 ID=Msa1365820-mRNA-1:exon:14848;Parent=Msa1365820-mRNA-1
tig0018389 exon 3515 3614 3515 ID=Msa1365820-mRNA-1:exon:14847;Parent=Msa1365820-mRNA-1
tig0018389 exon 3703 3752 3703 ID=Msa1365820-mRNA-1:exon:14846;Parent=Msa1365820-mRNA-1
tig0018389 exon 3847 3948 3847 ID=Msa1365820-mRNA-1:exon:14845;Parent=Msa1365820-mRNA-1
tig0018389 exon 4121 4198 4121 ID=Msa1365820-mRNA-1:exon:14844;Parent=Msa1365820-mRNA-1
tig0018389 exon 4299 4565 4299 ID=Msa1365820-mRNA-1:exon:14843;Parent=Msa1365820-mRNA-1
tig0018389 exon 4770 4869 4770 ID=Msa1365820-mRNA-1:exon:14842;Parent=Msa1365820-mRNA-1
tig0018389 exon 4965 5268 4965 ID=Msa1365820-mRNA-1:exon:14841;Parent=Msa1365820-mRNA-1
tig0018389 exon 5353 5790 5353 ID=Msa1365820-mRNA-1:exon:14840;Parent=Msa1365820-mRNA-1
tig0018389 five_prime_UTR 5387 5790 5387 ID=Msa1365820-mRNA-1:five_prime_utr;Parent=Msa1365820-mRNA-1
tig0018389 CDS 5353 5386 5353 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 4965 5268 4965 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 4770 4869 4770 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 4299 4565 4299 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 4121 4198 4121 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 3847 3948 3847 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 3703 3752 3703 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 3515 3614 3515 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 3329 3427 3329 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 3093 3206 3093 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 2908 2952 2908 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 2682 2826 2682 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 1818 2215 1818 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 1492 1566 1492 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 CDS 1373 1393 1373 ID=Msa1365820-mRNA-1:cds;Parent=Msa1365820-mRNA-1
tig0018389 three_prime_UTR 1063 1372 1063 ID=Msa1365820-mRNA-1:three_prime_utr;Parent=Msa1365820-mRNA-1
Gene Sequence

>Msa1365820

ATGTCTGGACCCCTTGATCGTTTCGCTAGACCTTGTTTTGAGGGGTTTTCTGGCAGTGATGAGAAGCGAGAGAGAAGATCTGATTTTGAGAATTCAGAAGATGAAAGGAGAACCAGAATTGGATCCTTAAAAAAGAAAGCTTTAAGTGCATCAACCAAGTTTAAGCATTCTCTTAGAAAGAAGAGTGGTAGGAGAAAGAGTGATGGACGTGTTAGCTCTGTTTCTATTGAGGATGTTAGAGATGTTGAGGAGCTTCAAGCTGTTGATGCTTTTCGTCAGTCTTTGATCATGGATGAGTTGCTTCCTGAAGCTTTTGATGATTACCATATGATGTTAAGATTTCTGAAAGCAAGGAAATTTGATATTGAAAAAGCAAAGCATATGTGGGCTGACATGCTACAATGGAGAAGGGAGTTTGGTGCTGACACCATTATGCAGGATTTTGAGTTCAAGGAGTTAAATGAAGTTGTGAAGTATTACCCACATGGCCATCATGGTGTAGACAAGGAAGGAAGGCCTGTTTATATTGAAAGACTTGGAAAAGTTGATCCGAACAAACTGATGCAGGTTACAACTATGGATAGATATGTTAAGTACCATGTGCAAGAGTTTGAGAAATCTTTTGCAATAAAGTTTCCTGCTTGCACTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGAGTGGGCCTTAAGAATTTTACAAAGTCAGCCCGTGAACTCATTCAGCGGTTGCAGAAGGTCGACGGTGACAATTACCCCGAGACACTCTGCCAAATGTTTATCATAAATGCCGGCCCTGGATTTAGACTGTTGTGGAGCACCGTCAAGTCTTTTCTTGATCCTAAAACAACCTCAAAGATCCACGTTCTTGGAAACAAGTATCAGAGCAAATTACTTGAAGTAATTGATGCCAGTGAGTTGCCGGAATTTCTCGGAGGTACCTGCTCTTGTGCAGACGAGGGAGGATGCCTTAGATCTGATAAAGGGCCATGGAAAAATCCTGAAATATTGAAGATGGTTCTCAATGGCGAACCACGGCGGGCAAGACAAGTAGTAAAGGTTCTCAACAGTGAAGGGAAGGTTATTGCATATGCGAAGCCACGATACCCAATGGTAAAAGGAAGCGATACATCTACTGCCGAATCAGGGTCAGAAGCTGAAGATATAGCTTCTCCAAAAGCAATGAAGAGCTATTCACACCTTAGACTGACCCCTGTTCGTGAGGAATCCACAATATTTGGAGATATTGTGAGGATGATGCTGATAATCAAAGCTAAGATAGCAGGAAAGGGAAGTTATGCTAACATGTCTGGGTATGATGAATATGTTCCAATGGTAGACAAACCTGTTGATGCTGAATGGAAGAGGCAAACATCTCTACAGAGGTCTCACACCTTAAAAGGTTGGTGGCTTCTTGGAACACGTCCTCTTCCTAACATACAAAACACTCCAGAAGGAGTTAAAGCTCGGGTTTGGGTAGCCCTGGCTGCCTTCTTCCTGATGTTATTTGCTCTTTTCCGTCAAGTTGCTTGCCGCATGACCAACAAACTTCCTGCAATATCATCTAATGATGATCAGAGAATTTCAGAACCAACTCTCGAGACAACAAACATGGAAGTTCTTCCTTCAACAAGCCAAGCACAGACAGAGGAAAATCTCTTTCCCTCCTTGCTGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGACACACTACAATCTAAGCCATCTGAAATGCCTTACGAGAAGGCGGAATTGTTGAATGCTGCGGTCTGCCGGGTGGATGCTTTGGAAGCAGAGTTAATTGCTACTAAAAAGGCTCTCTACGAAGCGTTAATGAGGCAAGAAGAGCTGCTTGCTTACATAGACCGCCAGGAAGAAGCCAAGTTGCGAAAAAAGAAGTTTTGCTGGTGA

Protein sequence

>Msa1365820

MSGPLDRFARPCFEGFSGSDEKRERRSDFENSEDERRTRIGSLKKKALSASTKFKHSLRKKSGRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPEAFDDYHMMLRFLKARKFDIEKAKHMWADMLQWRREFGADTIMQDFEFKELNEVVKYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVQEFEKSFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIQRLQKVDGDNYPETLCQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCSCADEGGCLRSDKGPWKNPEILKMVLNGEPRRARQVVKVLNSEGKVIAYAKPRYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREESTIFGDIVRMMLIIKAKIAGKGSYANMSGYDEYVPMVDKPVDAEWKRQTSLQRSHTLKGWWLLGTRPLPNIQNTPEGVKARVWVALAAFFLMLFALFRQVACRMTNKLPAISSNDDQRISEPTLETTNMEVLPSTSQAQTEENLFPSLLKRLGELEEKVDTLQSKPSEMPYEKAELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDRQEEAKLRKKKFCW*