AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0823150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0823150 MtrunA17_Chr5g0443411 85.039 635 42 7 1 632 1 585 0.0 657
Msa0823150 MtrunA17_Chr3g0096661 63.077 195 60 2 447 631 137 329 2.47e-61 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0823150 AT2G42840.1 58.289 187 60 5 450 632 134 306 5.18e-53 184

Find 344 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGTTGTTGGGGTTAT+AGG 0.118962 5_3:-61790576 None:intergenic
GATGGGGTTGGATCACAATT+TGG 0.173921 5_3:-61789925 None:intergenic
GATGGTGTTGTTGGGGTTAT+AGG 0.187860 5_3:-61790513 None:intergenic
GATGGTGTTGTTGGGGTTAT+AGG 0.187860 5_3:-61790639 None:intergenic
GATGGTGTTGTTGGGGTTAT+AGG 0.187860 5_3:-61790834 None:intergenic
GGTGATGGGGTGGGAGTTGA+TGG 0.188322 5_3:-61789979 None:intergenic
GATGGTGTTGTCGGGGTTAA+AGG 0.196171 5_3:-61790861 None:intergenic
GGTGATGGGGTTGGAGTTGA+TGG 0.228415 5_3:-61790036 None:intergenic
GATGGTGTTGTTGGGGTTAA+AGG 0.234509 5_3:-61790768 None:intergenic
GTGGGTTTGATGGTGTTGTT+GGG 0.240176 5_3:-61790521 None:intergenic
GAGGGTTTGATGGTGTTGTT+GGG 0.242841 5_3:-61790647 None:intergenic
GAGGGTTTGGTGGTGTTGTT+GGG 0.247181 5_3:-61790584 None:intergenic
GGAGGGTTTGGTGGTGTTGT+TGG 0.248996 5_3:-61790585 None:intergenic
GAGGGTGTTGTCGGGCTTGT+AGG 0.249927 5_3:-61790336 None:intergenic
GGTGATGGGGTAGGAGTTGA+TGG 0.253366 5_3:-61789856 None:intergenic
GTGGTGTTGTTGGGGTTATA+GGG 0.262325 5_3:-61790575 None:intergenic
GGAGGGTTTGATGGTGTTGT+TGG 0.269445 5_3:-61790648 None:intergenic
GGTGGGTTTGATGGTGTTGT+TGG 0.274156 5_3:-61790522 None:intergenic
ATGGGGTTGGATCACAATTT+GGG 0.282770 5_3:-61789924 None:intergenic
GGGAGGATTTGGAGGTGGTT+TGG 0.284865 5_3:-61789159 None:intergenic
GAGGGTTTGATGGTGTTGTC+GGG 0.290364 5_3:-61790869 None:intergenic
GAAAGGTGGTGTGGGGAAAG+TGG 0.291003 5_3:-61790970 None:intergenic
AAGGGTTTGATGGTGTTGTT+GGG 0.291609 5_3:-61790842 None:intergenic
GGAGGGTTTGATGGGGTTGT+TGG 0.292502 5_3:-61790459 None:intergenic
GATGGCGTTGTAGGGGTTAT+AGG 0.292511 5_3:-61790705 None:intergenic
AGAAAAGGAAAGGGAGGATT+TGG 0.297468 5_3:-61789170 None:intergenic
CCTCCTGATGGTGGGTTTGA+TGG 0.298529 5_3:-61790531 None:intergenic
TGTTAATTAGCATTTATATA+TGG 0.304298 5_3:+61791865 Msa0823150:three_prime_UTR
GTTGGAGTTGAGGGTGTTGT+TGG 0.307327 5_3:-61790441 None:intergenic
ATGGTGTTGTTGGGGTTATA+GGG 0.309013 5_3:-61790512 None:intergenic
ATGGTGTTGTTGGGGTTATA+GGG 0.309013 5_3:-61790638 None:intergenic
ATGGTGTTGTTGGGGTTATA+GGG 0.309013 5_3:-61790833 None:intergenic
GAGGATTTGATGGTGTTGTT+GGG 0.311465 5_3:-61790776 None:intergenic
AAAGGGTTTGATGGTGTTGT+TGG 0.314241 5_3:-61790843 None:intergenic
ATGGTGTTGTTGGGGTTAAA+GGG 0.314440 5_3:-61790767 None:intergenic
TACAACTCACCACCAACTTA+TGG 0.317432 5_3:+61790906 Msa0823150:CDS
AGAGCATGATCTAATTAGTT+TGG 0.318391 5_3:+61791709 Msa0823150:exon
GGAGGGTTTGATGGCGTTGT+AGG 0.319679 5_3:-61790714 None:intergenic
GTTGGGGTTATAGGGTTTGA+TGG 0.319935 5_3:-61790567 None:intergenic
CACCACCTGGTGATGGGGTT+GGG 0.324613 5_3:-61790140 None:intergenic
GTCGGGGTTAAAGGGTTTGA+TGG 0.325915 5_3:-61790852 None:intergenic
GCTTGAGTGTTGGCCATTAC+AGG 0.326014 5_3:-61789289 None:intergenic
CCTCCTGATGGAGGGTTTGA+TGG 0.330128 5_3:-61790879 None:intergenic
GGAGGGTTTGATGGTGTTGT+CGG 0.332624 5_3:-61790870 None:intergenic
CCTCCTGACGGAGGGTTTGA+TGG 0.337688 5_3:-61790723 None:intergenic
CAACTCATCTGGGGATTACT+AGG 0.339213 5_3:+61791406 Msa0823150:CDS
GGAGGATTTGATGGTGTTGT+TGG 0.347029 5_3:-61790777 None:intergenic
AGCATCACTCAGCTCAAATA+AGG 0.347612 5_3:+61791630 Msa0823150:CDS
GAGGGTGGACAATCGCTAGC+TGG 0.349675 5_3:-61790309 None:intergenic
GATGGGGTTGTTGGAGTTGA+GGG 0.350078 5_3:-61790450 None:intergenic
GGTGATGGGGTAGGAGTTGA+CGG 0.353452 5_3:-61790090 None:intergenic
GGAACCTTAGGCAATGCTTT+TGG 0.354127 5_3:+61791436 Msa0823150:CDS
CCACCTCCTGGAGGAGTTGA+TGG 0.356567 5_3:-61790183 None:intergenic
CATCGCCTGAGGGTGGTGTT+GGG 0.358547 5_3:-61790221 None:intergenic
GAGGGTGTTGTTGGGCTTGT+AGG 0.360889 5_3:-61790432 None:intergenic
CCTTGTTATTGTTCCTGTAA+TGG 0.362368 5_3:+61789276 Msa0823150:CDS
GTTGGGTCTGAGGGTGTTGT+CGG 0.365243 5_3:-61790345 None:intergenic
ATGGTGTTGTCGGGGTTAAA+GGG 0.366078 5_3:-61790860 None:intergenic
CCTCCTGATGGAGGGTTTGA+TGG 0.367273 5_3:-61790657 None:intergenic
GGGGTTGGAGTTGATGGTGT+TGG 0.372764 5_3:-61790030 None:intergenic
TGATGGGGTGGGAGTTGATG+GGG 0.373502 5_3:-61789977 None:intergenic
CTTCCACCAGTGGGTGGTGA+TGG 0.373634 5_3:-61790261 None:intergenic
AGCTTCTTATCTTAACTCCT+TGG 0.380146 5_3:+61791558 Msa0823150:CDS
TGATGGGGTTGTTGGAGTTG+AGG 0.383119 5_3:-61790451 None:intergenic
CCTCCTGATGGAGGATTTGA+TGG 0.388029 5_3:-61790786 None:intergenic
ATACTCACCCACAACTCATC+TGG 0.388415 5_3:+61791395 Msa0823150:CDS
ATGGGGTGCCAGGATCGATC+GGG 0.391054 5_3:-61790941 None:intergenic
TGTGTTAATTTATCCTATGA+TGG 0.395984 5_3:+61791819 Msa0823150:three_prime_UTR
CCATCGCCTGAGGGTGGTGT+TGG 0.396249 5_3:-61790222 None:intergenic
ATGGCGTTGTAGGGGTTATA+GGG 0.397396 5_3:-61790704 None:intergenic
ATTAACTTTATTCAAAACTT+AGG 0.399802 5_3:-61791890 None:intergenic
GTGATGGGGTGGGAGTTGAT+GGG 0.399805 5_3:-61789978 None:intergenic
CCACCATCTGAGGGTGGTGA+TGG 0.399986 5_3:-61789871 None:intergenic
AAGGTGGTGTGGGGAAAGTG+GGG 0.400789 5_3:-61790968 None:intergenic
CCACCATCTGAGGGTGGTGA+TGG 0.401009 5_3:-61790105 None:intergenic
CACTACCTGATGGTGGTGAT+GGG 0.401118 5_3:-61790050 None:intergenic
AAAGGTGGTGTGGGGAAAGT+GGG 0.402261 5_3:-61790969 None:intergenic
CCCCTGATGGAGGGTTTGAT+GGG 0.407488 5_3:-61790467 None:intergenic
GGAGGGCTTGACGGTGTTGA+TGG 0.408633 5_3:-61790369 None:intergenic
TTCCACCAGTGGGTGGTGAT+GGG 0.410965 5_3:-61790260 None:intergenic
TTCCGTCACCACCGGGTGAT+GGG 0.411470 5_3:-61789942 None:intergenic
TCTTACCATGTTCACAATGC+TGG 0.414379 5_3:+61789234 Msa0823150:CDS
TCACCACCTGGTGATGGGGT+TGG 0.415214 5_3:-61790141 None:intergenic
GAAGTCTTAAATATAATATA+CGG 0.416577 5_3:-61791760 None:intergenic
AGGGTGGACAATCGCTAGCT+GGG 0.418253 5_3:-61790308 None:intergenic
CATAGTTGCTTTGAGAGAAA+AGG 0.419458 5_3:-61789185 None:intergenic
TCTCCTGAGGGAGGGCTTGA+CGG 0.420711 5_3:-61790378 None:intergenic
GGTGACGGAGTTGGATTTGA+TGG 0.422824 5_3:-61789802 None:intergenic
GTTGGGGTTAAAGGGTCTGT+TGG 0.424256 5_3:-61790759 None:intergenic
CTGACTTGATCAGTTGTGTA+AGG 0.425458 5_3:-61791595 None:intergenic
CCACCATCCGATGGTGGTGA+TGG 0.425647 5_3:-61789994 None:intergenic
CTTGACGGTGTTGATGGTGT+TGG 0.426736 5_3:-61790363 None:intergenic
CTAGGCTGGTGGGGAACCTT+AGG 0.427247 5_3:+61791424 Msa0823150:CDS
GGGGTGCCAGGATCGATCGG+GGG 0.428278 5_3:-61790939 None:intergenic
TGGGGTGGGAGTTGATGGGG+TGG 0.429625 5_3:-61789974 None:intergenic
TTGACGGTGTTGATGGTGTT+GGG 0.430570 5_3:-61790362 None:intergenic
ACCCCATCAAACCCTCCATC+AGG 0.431165 5_3:+61790465 Msa0823150:CDS
GGGGTAGGAGTTGATGGGGT+TGG 0.431600 5_3:-61789850 None:intergenic
GGGGTTAAAGGGTCTGTTGG+TGG 0.432533 5_3:-61790756 None:intergenic
TTGGAGTTGAGGGTGTTGTT+GGG 0.432590 5_3:-61790440 None:intergenic
TTGGGTCTGAGGGTGTTGTC+GGG 0.433870 5_3:-61790344 None:intergenic
CTGAGACTTGCACCGAGTCC+TGG 0.434073 5_3:-61791472 None:intergenic
GAGGGTTTGATGGCGTTGTA+GGG 0.437684 5_3:-61790713 None:intergenic
CCACTACCTGATGGTGGTGA+TGG 0.438808 5_3:-61790051 None:intergenic
AATGGGGTGCCAGGATCGAT+CGG 0.441759 5_3:-61790942 None:intergenic
AAAGGAAAGGGAGGATTTGG+AGG 0.443542 5_3:-61789167 None:intergenic
CCTGAGGGTGGTGTTGGGGA+TGG 0.448406 5_3:-61790216 None:intergenic
TAGCCTCCTGATGGAGGGTT+TGG 0.449051 5_3:-61790597 None:intergenic
TGGGGTGCCAGGATCGATCG+GGG 0.452157 5_3:-61790940 None:intergenic
CCAGTGGGTGGTGATGGGGT+TGG 0.455103 5_3:-61790255 None:intergenic
GGAGATGGTGCAGGAAGGAA+AGG 0.457013 5_3:-61790987 None:intergenic
GGATCATAACTTCCACCTCC+TGG 0.463129 5_3:-61790195 None:intergenic
CACCATCTGAGGGTGGTGAT+GGG 0.463896 5_3:-61790104 None:intergenic
GTGATGGGGTAGGAGTTGAT+GGG 0.464200 5_3:-61789855 None:intergenic
GCAGGAAGGAAAGGTGGTGT+GGG 0.464521 5_3:-61790978 None:intergenic
CTTCCGTCACCACCGGGTGA+TGG 0.465953 5_3:-61789943 None:intergenic
TTCCATCACCACCTGGTGAT+GGG 0.467491 5_3:-61790146 None:intergenic
TACTCACCCACAACTCATCT+GGG 0.467667 5_3:+61791396 Msa0823150:CDS
CACCACTCAGGAGGTGGTTG+TGG 0.467797 5_3:+61789622 Msa0823150:CDS
CACCATCCGATGGTGGTGAT+GGG 0.468580 5_3:-61789993 None:intergenic
GTTGGGGTTATAGGGTCTGA+TGG 0.469463 5_3:-61790504 None:intergenic
GTTGGGGTTATAGGGTCTGA+TGG 0.469463 5_3:-61790630 None:intergenic
CCTCCTGAGTGGTGAGGTGG+TGG 0.470011 5_3:-61789613 None:intergenic
CCTCCTGATGGAGGGTTTGG+TGG 0.470358 5_3:-61790594 None:intergenic
AGGTGGTGTGGGGAAAGTGG+GGG 0.470458 5_3:-61790967 None:intergenic
GGGTGCCAGGATCGATCGGG+GGG 0.471002 5_3:-61790938 None:intergenic
GGAGTTGGATTTGATGGAGT+TGG 0.475433 5_3:-61789796 None:intergenic
CAGTGCACTGAATCCATCAT+AGG 0.475865 5_3:-61791832 None:intergenic
AGTGGCACTCCACCCTCTAG+TGG 0.478705 5_3:+61789673 Msa0823150:CDS
TTTGGTGTGCATAGTCTGCC+AGG 0.478995 5_3:+61791454 Msa0823150:CDS
GTTCACAATGCTGGTTGCAT+TGG 0.481392 5_3:+61789243 Msa0823150:CDS
TGCTTTGAGAGAAAAGGAAA+GGG 0.482585 5_3:-61789179 None:intergenic
ATCCGATGGTGGTGATGGGG+TGG 0.484247 5_3:-61789989 None:intergenic
AGGATTTGATGGTGTTGTTG+GGG 0.486806 5_3:-61790775 None:intergenic
AGGGTGTTGTCGGGCTTGTA+GGG 0.488489 5_3:-61790335 None:intergenic
TCAAGCCCTCCCTCAGGAGA+TGG 0.493225 5_3:+61790381 Msa0823150:CDS
TCACCACCGGGTGATGGGGT+TGG 0.497318 5_3:-61789937 None:intergenic
ACCCCATCACCCGGTGGTGA+CGG 0.497936 5_3:+61789940 Msa0823150:CDS
ACCGTGACCGTGAGAGGGTG+AGG 0.500828 5_3:-61789698 None:intergenic
GTTGGGGTTATAGGGTCTTG+TGG 0.501820 5_3:-61790825 None:intergenic
TCCTCACCCTCTCACGGTCA+CGG 0.503431 5_3:+61789697 Msa0823150:CDS
ACTTCCTGCTGCTTGAGTGT+TGG 0.504201 5_3:-61789299 None:intergenic
ACTGTAACTTCCGTCACCAC+CGG 0.504552 5_3:-61789950 None:intergenic
TGGAGAAGTGAGTGAAGAGT+GGG 0.505317 5_3:-61789139 None:intergenic
ACCCCATCACCAGGTGGTGA+TGG 0.505748 5_3:+61790144 Msa0823150:CDS
CCTGATGGTGGTGATGGGGT+TGG 0.507845 5_3:-61790045 None:intergenic
CCATCAACTCCTCCAGGAGG+TGG 0.507930 5_3:+61790183 Msa0823150:CDS
ACACCATCAAACCCACCATC+AGG 0.508402 5_3:+61790528 Msa0823150:CDS
ACTCCACCCTCTAGTGGCAG+TGG 0.510232 5_3:+61789655 Msa0823150:CDS
TTGCTTTGAGAGAAAAGGAA+AGG 0.510249 5_3:-61789180 None:intergenic
GGGGTAGGAGTTGACGGGGT+CGG 0.510282 5_3:-61790084 None:intergenic
GGGGTTATAGGGTTTGATGG+TGG 0.511028 5_3:-61790564 None:intergenic
CTGGGGATTACTAGGCTGGT+GGG 0.511530 5_3:+61791414 Msa0823150:CDS
AGGGTTTGGTGGTGTTGTTG+GGG 0.512295 5_3:-61790583 None:intergenic
GTTGATGGTGTTGGGTCTGA+GGG 0.512538 5_3:-61790354 None:intergenic
TGTTGATGGTGTTGGGTCTG+AGG 0.513159 5_3:-61790355 None:intergenic
CCATCCCCAACACCACCCTC+AGG 0.514434 5_3:+61790216 Msa0823150:CDS
TGGGTTTGATGGTGTTGTTG+GGG 0.514820 5_3:-61790520 None:intergenic
AGGGTTTGATGGTGTTGTTG+GGG 0.514820 5_3:-61790646 None:intergenic
TCATCTGGGGATTACTAGGC+TGG 0.515340 5_3:+61791410 Msa0823150:CDS
GGGCTACCACTTCCATAAGT+TGG 0.515629 5_3:-61790918 None:intergenic
GTGATGGGGTAGGAGTTGAC+GGG 0.516936 5_3:-61790089 None:intergenic
CACCATCTGAGGGTGGTGAT+GGG 0.517634 5_3:-61789870 None:intergenic
TGCAACCAGCATTGTGAACA+TGG 0.518407 5_3:-61789239 None:intergenic
TTGTAGTACCCTCCTGATGG+AGG 0.521570 5_3:-61790888 None:intergenic
GTACCAGTGGGAGATGGTGC+AGG 0.522929 5_3:-61790996 None:intergenic
CCACTGCCTGACGGTGGTGA+CGG 0.525331 5_3:-61789817 None:intergenic
TGTAACTTCCACTGCCTGAA+GGG 0.525487 5_3:-61789771 None:intergenic
AGGGTTTGATGGTGTTGTTG+GGG 0.525570 5_3:-61790841 None:intergenic
GGAAAGGGAGGATTTGGAGG+TGG 0.526743 5_3:-61789164 None:intergenic
CCAACCCCATCACCACCATC+AGG 0.526836 5_3:+61790045 Msa0823150:CDS
CTTCCATCACCACCTGGTGA+TGG 0.528472 5_3:-61790147 None:intergenic
GTCGGGCTTGTAGGGTCTGA+GGG 0.530144 5_3:-61790327 None:intergenic
TTTGAGAGAAAAGGAAAGGG+AGG 0.531290 5_3:-61789176 None:intergenic
TCCACCAGTGGGTGGTGATG+GGG 0.531406 5_3:-61790259 None:intergenic
TCCGATGGTGGTGATGGGGT+GGG 0.531969 5_3:-61789988 None:intergenic
GTTGGGCTTGTAGGATCTTG+TGG 0.533149 5_3:-61790423 None:intergenic
CTTCCTGCACCATCTCCCAC+TGG 0.533310 5_3:+61790993 Msa0823150:CDS
CCTGGAGGAGTTGATGGAGT+TGG 0.533764 5_3:-61790177 None:intergenic
ACACCACCAAACCCTCCATC+AGG 0.533807 5_3:+61790591 Msa0823150:CDS
ACACCATCAAACCCTCCATC+AGG 0.533807 5_3:+61790654 Msa0823150:CDS
ACACCATCAAACCCTCCATC+AGG 0.533807 5_3:+61790876 Msa0823150:CDS
GGGGTGGGAGTTGATGGGGT+GGG 0.535232 5_3:-61789973 None:intergenic
CCGTCACCACCGTCAGGCAG+TGG 0.535744 5_3:+61789817 Msa0823150:CDS
ACCCTCCATCTCCTGAGGGA+GGG 0.535753 5_3:-61790386 None:intergenic
TGCAGGAAGGAAAGGTGGTG+TGG 0.536405 5_3:-61790979 None:intergenic
GAGCGCATCAGTTCTTGTGT+TGG 0.536546 5_3:-61791512 None:intergenic
TTGGAGAAGTGAGTGAAGAG+TGG 0.539325 5_3:-61789140 None:intergenic
ACACCATCAAATCCTCCATC+AGG 0.539376 5_3:+61790783 Msa0823150:CDS
GTGCATAGTCTGCCAGGACT+CGG 0.540042 5_3:+61791460 Msa0823150:CDS
GTGGCACTCCACCCTCTAGT+GGG 0.541059 5_3:+61789674 Msa0823150:CDS
GATGGTGCAGGAAGGAAAGG+TGG 0.541187 5_3:-61790984 None:intergenic
TCACCACCATCGGATGGTGG+TGG 0.541520 5_3:+61789997 Msa0823150:CDS
GAGTCGTAGCCTCCTGATGG+AGG 0.541984 5_3:-61790603 None:intergenic
GTAATCCCCAGATGAGTTGT+GGG 0.542041 5_3:-61791402 None:intergenic
AGAACTTCCGCCACCATCTG+AGG 0.542350 5_3:-61790115 None:intergenic
TTGTAACTTCCACTGCCTGA+AGG 0.542724 5_3:-61789772 None:intergenic
CCCCATCAAACCCTCCATCA+GGG 0.543671 5_3:+61790466 Msa0823150:CDS
CCAACTCCGTCACCACCGTC+AGG 0.544774 5_3:+61789811 Msa0823150:CDS
TCTGGGGATTACTAGGCTGG+TGG 0.546406 5_3:+61791413 Msa0823150:CDS
ACGCCATCAAACCCTCCGTC+AGG 0.546447 5_3:+61790720 Msa0823150:CDS
GGGGTTATAGGGTCTGATGG+TGG 0.547623 5_3:-61790501 None:intergenic
GGGGTTATAGGGTCTGATGG+TGG 0.547623 5_3:-61790627 None:intergenic
CCAACTCCATCAACTCCTCC+AGG 0.548752 5_3:+61790177 Msa0823150:CDS
TCCCACCCCATCACCACCAT+CGG 0.549269 5_3:+61789987 Msa0823150:CDS
ATCGCCTGAGGGTGGTGTTG+GGG 0.552008 5_3:-61790220 None:intergenic
TGTCGGGCTTGTAGGGTCTG+AGG 0.552169 5_3:-61790328 None:intergenic
TGTAGTACCCTCCTGATGGA+GGG 0.552185 5_3:-61790887 None:intergenic
AGTCATCATGGCCATGGTCA+TGG 0.554015 5_3:+61789736 Msa0823150:CDS
ATGGCCAACACTCAAGCAGC+AGG 0.554124 5_3:+61789295 Msa0823150:CDS
CCAACACCACCCTCAGGCGA+TGG 0.554158 5_3:+61790222 Msa0823150:CDS
TCTGAGGGTGGTGATGGGGT+AGG 0.554921 5_3:-61789865 None:intergenic
TCTGAGGGTGGTGATGGGGT+AGG 0.554921 5_3:-61790099 None:intergenic
AGTAATCCCCAGATGAGTTG+TGG 0.557092 5_3:-61791403 None:intergenic
CCCTCTCACGGTCACGGTCA+CGG 0.560154 5_3:+61789703 Msa0823150:CDS
GGTCATGGTCATAGTCATCA+TGG 0.560918 5_3:+61789724 Msa0823150:CDS
GGGGTTATAGGGTCTTGTGG+TGG 0.562112 5_3:-61790822 None:intergenic
CTCGGAGCACTTTACAGAGA+AGG 0.562112 5_3:+61791532 Msa0823150:CDS
CTGTAACTTCCGTCACCACC+GGG 0.562180 5_3:-61789949 None:intergenic
GGGTGGACAATCGCTAGCTG+GGG 0.563217 5_3:-61790307 None:intergenic
TCACCACCAACTTATGGAAG+TGG 0.565348 5_3:+61790912 Msa0823150:CDS
TCCGTCACCACCGGGTGATG+GGG 0.566159 5_3:-61789941 None:intergenic
TGGAGTGCCACTGCCACTAG+AGG 0.566323 5_3:-61789662 None:intergenic
GGAGTGCCACTGCCACTAGA+GGG 0.566518 5_3:-61789661 None:intergenic
GAGTTGTAGTACCCTCCTGA+TGG 0.566528 5_3:-61790798 None:intergenic
GAGTTGTAGTACCCTCCTGA+TGG 0.566528 5_3:-61790891 None:intergenic
CCCTGATGGAGGGTTTGATG+GGG 0.567174 5_3:-61790466 None:intergenic
AGGGTTTGATGGCGTTGTAG+GGG 0.567725 5_3:-61790712 None:intergenic
TCCATCACCACCTGGTGATG+GGG 0.568364 5_3:-61790145 None:intergenic
GAGTCGTAGCCTCCTGATGG+TGG 0.568633 5_3:-61790540 None:intergenic
ACACCGTCAAGCCCTCCCTC+AGG 0.569313 5_3:+61790375 Msa0823150:CDS
GGTGAGTCGTAGCCTCCTGA+TGG 0.572152 5_3:-61790606 None:intergenic
AGTCGTAGCCTCCTGATGGT+GGG 0.574436 5_3:-61790539 None:intergenic
GAGTTATAGTAACCTCCTGA+TGG 0.575530 5_3:-61790669 None:intergenic
CCACCTCACCACTCAGGAGG+TGG 0.575956 5_3:+61789616 Msa0823150:CDS
GGAGGTGGTTGTGGTAGCAG+TGG 0.577847 5_3:+61789631 Msa0823150:CDS
TCTGACCCAACCCCATCACC+AGG 0.578655 5_3:+61790135 Msa0823150:CDS
CAGGAAGGAAAGGTGGTGTG+GGG 0.579362 5_3:-61790977 None:intergenic
ACCCCATCACCACCCACTGG+TGG 0.579613 5_3:+61790258 Msa0823150:CDS
CACGGTCACGGTCACGGTCA+TGG 0.582076 5_3:+61789709 Msa0823150:CDS
AGCCCTCCCTCAGGAGATGG+AGG 0.582164 5_3:+61790384 Msa0823150:CDS
GGTGAGTCGTAGCCTCCTGA+CGG 0.583121 5_3:-61790735 None:intergenic
GGTGGACAATCGCTAGCTGG+GGG 0.583740 5_3:-61790306 None:intergenic
TCACCACCCTCAGATGGTGG+TGG 0.584377 5_3:+61789874 Msa0823150:CDS
ACCATCCGATGGTGGTGATG+GGG 0.584551 5_3:-61789992 None:intergenic
CCTGACGGTGGTGACGGAGT+TGG 0.585914 5_3:-61789811 None:intergenic
GAGTCGTAGCCTCCTGACGG+AGG 0.586762 5_3:-61790732 None:intergenic
AGGGTTTGATGGTGTTGTCG+GGG 0.587568 5_3:-61790868 None:intergenic
AGAACTTCCACCACCATCTG+AGG 0.587872 5_3:-61789881 None:intergenic
GGTCATAGTCATCATGGCCA+TGG 0.588281 5_3:+61789730 Msa0823150:CDS
AGTGGGTCCTCACCCTCTCA+CGG 0.589505 5_3:+61789691 Msa0823150:CDS
ACCCCATCACCACCATCGGA+TGG 0.589544 5_3:+61789991 Msa0823150:CDS
CTACCACTTCCATAAGTTGG+TGG 0.591036 5_3:-61790915 None:intergenic
ACCCCATCACCACCCTCAGA+TGG 0.591637 5_3:+61789868 Msa0823150:CDS
ACCCCATCACCACCCTCAGA+TGG 0.591637 5_3:+61790102 Msa0823150:CDS
CCATCACCACCCTCAGATGG+TGG 0.592841 5_3:+61790105 Msa0823150:CDS
TTATAGTAACCTCCTGATGG+AGG 0.595018 5_3:-61790666 None:intergenic
CCATCACCACCATCAGGTAG+TGG 0.596644 5_3:+61790051 Msa0823150:CDS
AACACAAGAACTGATGCGCT+CGG 0.597150 5_3:+61791514 Msa0823150:CDS
TTATAACTTCCATCGCCTGA+GGG 0.597171 5_3:-61790231 None:intergenic
CCATTACAGGAACAATAACA+AGG 0.597546 5_3:-61789276 None:intergenic
TGTGATCCAACCCCATCACC+CGG 0.598262 5_3:+61789931 Msa0823150:CDS
GGTGAGTCGTAGCCTCCTGA+TGG 0.598955 5_3:-61790543 None:intergenic
CTGTAACTTCCACTGCCTGA+CGG 0.599012 5_3:-61789826 None:intergenic
TGATGGGGTAGGAGTTGATG+GGG 0.600582 5_3:-61789854 None:intergenic
ACCATCTGAGGGTGGTGATG+GGG 0.600702 5_3:-61789869 None:intergenic
TGGGGATTACTAGGCTGGTG+GGG 0.602911 5_3:+61791415 Msa0823150:CDS
ATTATAACTTCCATCGCCTG+AGG 0.603880 5_3:-61790232 None:intergenic
AACTTACTTGCATGTACCAG+TGG 0.604456 5_3:-61791009 None:intergenic
AGTCGTAGCCTCCTGATGGA+GGG 0.604475 5_3:-61790602 None:intergenic
ACCATCTGAGGGTGGTGATG+GGG 0.605979 5_3:-61790103 None:intergenic
AGTCGTAGCCTCCTGACGGA+GGG 0.606915 5_3:-61790731 None:intergenic
TACCCTCCATCTCCTGAGGG+AGG 0.606933 5_3:-61790387 None:intergenic
TCACCACCCTCAGATGGTGG+CGG 0.608587 5_3:+61790108 Msa0823150:CDS
TATAGTAACCTCCTGATGGA+GGG 0.609611 5_3:-61790665 None:intergenic
TGACTTGATCAGTTGTGTAA+GGG 0.610270 5_3:-61791594 None:intergenic
TTGTAGTACCCTCCTGATGG+AGG 0.611603 5_3:-61790795 None:intergenic
CACACCAAAAGCATTGCCTA+AGG 0.612626 5_3:-61791440 None:intergenic
GTAACTTCCACTGCCTGAAG+GGG 0.613155 5_3:-61789770 None:intergenic
CCAACCCCATCACCACCCAC+TGG 0.613870 5_3:+61790255 Msa0823150:CDS
CCCATCAAACCCTCCATCAG+GGG 0.614465 5_3:+61790467 Msa0823150:CDS
CTTGTGTTGGAAAGTGCTTG+TGG 0.615132 5_3:-61791499 None:intergenic
CCATCACCACCCTCAGATGG+TGG 0.615263 5_3:+61789871 Msa0823150:CDS
AACTAATTAGATCATGCTCT+AGG 0.616122 5_3:-61791706 None:intergenic
GTGTAACTTCCACTACCTGA+TGG 0.616255 5_3:-61790060 None:intergenic
GGGGTTATAGGGTCTTGTGG+TGG 0.620774 5_3:-61790693 None:intergenic
CCATCAAACCCTCCATCAGG+AGG 0.623480 5_3:+61790879 Msa0823150:CDS
CCATCAAACCCTCCGTCAGG+AGG 0.624525 5_3:+61790723 Msa0823150:CDS
GGGCTTGTAGGGTCTGAGGG+TGG 0.625596 5_3:-61790324 None:intergenic
ACTACCTGATGGTGGTGATG+GGG 0.628367 5_3:-61790049 None:intergenic
TAACTTCCATCGCCTGAGGG+TGG 0.628597 5_3:-61790228 None:intergenic
GTGTAACTTCCATCACCACC+TGG 0.630491 5_3:-61790153 None:intergenic
GAACTTCCGCCACCATCTGA+GGG 0.631062 5_3:-61790114 None:intergenic
GTAGGGGTTATAGGGTCTTG+TGG 0.631409 5_3:-61790696 None:intergenic
AGTCCACCACCTCACCACTC+AGG 0.631591 5_3:+61789610 Msa0823150:CDS
CCATCAAATCCTCCATCAGG+AGG 0.632305 5_3:+61790786 Msa0823150:CDS
CCATCACCACCATCGGATGG+TGG 0.633003 5_3:+61789994 Msa0823150:CDS
GGTGAGGACCCACTAGAGGG+TGG 0.634125 5_3:-61789682 None:intergenic
CAGTGGGAGATGGTGCAGGA+AGG 0.636255 5_3:-61790992 None:intergenic
TAACTTCCACCACCATCCGA+TGG 0.637629 5_3:-61790003 None:intergenic
TGGAGTGTAACTTCCACCAG+TGG 0.639524 5_3:-61790271 None:intergenic
GAACTTCCACCACCATCTGA+GGG 0.640554 5_3:-61789880 None:intergenic
AGAGGGTGAGGACCCACTAG+AGG 0.641171 5_3:-61789686 None:intergenic
TTGCATGTACCAGTGGGAGA+TGG 0.641862 5_3:-61791002 None:intergenic
TAGTTCAGTAGATAAATCTG+AGG 0.642316 5_3:-61789326 None:intergenic
GTGCCACTGCCACTAGAGGG+TGG 0.643466 5_3:-61789658 None:intergenic
TAGTACCCTCCATCTCCTGA+GGG 0.643913 5_3:-61790390 None:intergenic
ATAGTACCCTCCATCTCCTG+AGG 0.644068 5_3:-61790391 None:intergenic
ACCGTGACCGTGACCGTGAG+AGG 0.644851 5_3:-61789704 None:intergenic
AGTGGCACTCCACCCTCTAG+TGG 0.649454 5_3:+61789649 Msa0823150:CDS
GCCCTCCCTCAGGAGATGGA+GGG 0.652399 5_3:+61790385 Msa0823150:CDS
GAGGGTGAGGACCCACTAGA+GGG 0.654500 5_3:-61789685 None:intergenic
GGAGTGTAACTTCCACCAGT+GGG 0.654640 5_3:-61790270 None:intergenic
TGGGGTTGGATCACAATTTG+GGG 0.655319 5_3:-61789923 None:intergenic
CCACCTCCTGAGTGGTGAGG+TGG 0.660074 5_3:-61789616 None:intergenic
AGGGAACTTGTTGTTCACCA+AGG 0.661827 5_3:-61791575 None:intergenic
CCATCAAACCCTCCATCAGG+GGG 0.662738 5_3:+61790468 Msa0823150:CDS
CTTCCACCACCATCCGATGG+TGG 0.666694 5_3:-61790000 None:intergenic
CCACCAAACCCTCCATCAGG+AGG 0.667889 5_3:+61790594 Msa0823150:CDS
AGTTCAGTAGATAAATCTGA+GGG 0.668203 5_3:-61789325 None:intergenic
CATCAAATCCTCCATCAGGA+GGG 0.671661 5_3:+61790787 Msa0823150:CDS
CATCAAACCCTCCATCAGGA+GGG 0.671661 5_3:+61790880 Msa0823150:CDS
CCACCACCTCACCACTCAGG+AGG 0.673312 5_3:+61789613 Msa0823150:CDS
ACTTACTTGCATGTACCAGT+GGG 0.675025 5_3:-61791008 None:intergenic
CCATCAAACCCTCCATCAGG+AGG 0.675514 5_3:+61790657 Msa0823150:CDS
TAACTTCCACTGCCTGAAGG+GGG 0.677446 5_3:-61789769 None:intergenic
CAACCACCTCCTGAGTGGTG+AGG 0.677979 5_3:-61789619 None:intergenic
CCATCAAACCCACCATCAGG+AGG 0.679038 5_3:+61790531 Msa0823150:CDS
TCATAACTTCCACCTCCTGG+AGG 0.682134 5_3:-61790192 None:intergenic
CCGTGACCGTGACCGTGAGA+GGG 0.690089 5_3:-61789703 None:intergenic
GGGCTTGTAGGATCTTGTGG+TGG 0.691171 5_3:-61790420 None:intergenic
CTTCCGCCACCATCTGAGGG+TGG 0.693273 5_3:-61790111 None:intergenic
TACCACAACCACCTCCTGAG+TGG 0.698720 5_3:-61789624 None:intergenic
GACCCAACCCCATCACCAGG+TGG 0.702466 5_3:+61790138 Msa0823150:CDS
ACTCACCCACAACTCATCTG+GGG 0.705013 5_3:+61791397 Msa0823150:CDS
CTTCCACCACCATCTGAGGG+TGG 0.705692 5_3:-61789877 None:intergenic
GTGTAACTTCCACCAGTGGG+TGG 0.711537 5_3:-61790267 None:intergenic
TAACTTCCACTGCCTGACGG+TGG 0.714222 5_3:-61789823 None:intergenic
GTGATGATGATCCATGACCA+TGG 0.722892 5_3:-61789747 None:intergenic
TAACTTCCACTACCTGATGG+TGG 0.726578 5_3:-61790057 None:intergenic
TGATGGGGTAGGAGTTGACG+GGG 0.727815 5_3:-61790088 None:intergenic
ACTCCATCAACTCCTCCAGG+AGG 0.736849 5_3:+61790180 Msa0823150:CDS
GATCCAACCCCATCACCCGG+TGG 0.738890 5_3:+61789934 Msa0823150:CDS
GGGGTTGGATCACAATTTGG+GGG 0.808050 5_3:-61789922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTAATGATATGATTT+TGG + chr5_3:61789409-61789428 Msa0823150:intron 10.0%
!!! AAAAATTATAGTTTTTATCA+GGG - chr5_3:61791104-61791123 None:intergenic 10.0%
!!! AAAAAATTATAGTTTTTATC+AGG - chr5_3:61791105-61791124 None:intergenic 10.0%
!!! AAAAAAGTTTTATATCTTCA+AGG - chr5_3:61791072-61791091 None:intergenic 15.0%
!!! AAAATTATAGTTTTTATCAG+GGG - chr5_3:61791103-61791122 None:intergenic 15.0%
!! AAAATTACATACACATATTA+CGG - chr5_3:61791191-61791210 None:intergenic 15.0%
!!! TTATATTTTCAAAATCGATA+TGG - chr5_3:61791234-61791253 None:intergenic 15.0%
!! AAATATAAATCATGTACAAA+AGG + chr5_3:61791246-61791265 Msa0823150:intron 15.0%
!! GAAGTCTTAAATATAATATA+CGG - chr5_3:61791763-61791782 None:intergenic 15.0%
!! TGTTAATTAGCATTTATATA+TGG + chr5_3:61791865-61791884 Msa0823150:three_prime_UTR 15.0%
!! ATTAACTTTATTCAAAACTT+AGG - chr5_3:61791893-61791912 None:intergenic 15.0%
!!! TTCTTATTTATGCAAAATAG+TGG + chr5_3:61789382-61789401 Msa0823150:intron 20.0%
!!! CAACATGAATAAATTTTACT+TGG - chr5_3:61791158-61791177 None:intergenic 20.0%
!! AAATTACATACACATATTAC+GGG - chr5_3:61791190-61791209 None:intergenic 20.0%
!!! TTTTGATAATTTACATCATG+AGG - chr5_3:61791304-61791323 None:intergenic 20.0%
!!! CATTGATTTTGAATTGTTGA+AGG + chr5_3:61789580-61789599 Msa0823150:intron 25.0%
! AATTACATACACATATTACG+GGG - chr5_3:61791189-61791208 None:intergenic 25.0%
!! AAATCGATATGGACTAAATA+AGG - chr5_3:61791223-61791242 None:intergenic 25.0%
!! TACAAAAGGTAGTTTTTACA+GGG + chr5_3:61791260-61791279 Msa0823150:intron 25.0%
! ATGAGGTTTAAATATGTTGT+TGG - chr5_3:61791287-61791306 None:intergenic 25.0%
! TGTGTTAATTTATCCTATGA+TGG + chr5_3:61791819-61791838 Msa0823150:three_prime_UTR 25.0%
!! AAGTTAATATTTTGCTGCTA+TGG + chr5_3:61791905-61791924 Msa0823150:three_prime_UTR 25.0%
AGTTCAGTAGATAAATCTGA+GGG - chr5_3:61789328-61789347 None:intergenic 30.0%
TAGTTCAGTAGATAAATCTG+AGG - chr5_3:61789329-61789348 None:intergenic 30.0%
CAATGTATTACACAACATGA+GGG - chr5_3:61789565-61789584 None:intergenic 30.0%
TCAATGTATTACACAACATG+AGG - chr5_3:61789566-61789585 None:intergenic 30.0%
TATGTTGCACTGTAATGTAA+AGG + chr5_3:61791040-61791059 Msa0823150:intron 30.0%
! GTACAAAAGGTAGTTTTTAC+AGG + chr5_3:61791259-61791278 Msa0823150:intron 30.0%
AACTAATTAGATCATGCTCT+AGG - chr5_3:61791709-61791728 None:intergenic 30.0%
AGAGCATGATCTAATTAGTT+TGG + chr5_3:61791709-61791728 Msa0823150:exon 30.0%
!!! TAGTAAGAGTGTTTTGCATT+AGG + chr5_3:61791783-61791802 Msa0823150:three_prime_UTR 30.0%
!! TGCTTTGAGAGAAAAGGAAA+GGG - chr5_3:61789182-61789201 None:intergenic 35.0%
!! TTGCTTTGAGAGAAAAGGAA+AGG - chr5_3:61789183-61789202 None:intergenic 35.0%
!! CATAGTTGCTTTGAGAGAAA+AGG - chr5_3:61789188-61789207 None:intergenic 35.0%
! CTTTTCTCTCAAAGCAACTA+TGG + chr5_3:61789186-61789205 Msa0823150:exon 35.0%
CCATTACAGGAACAATAACA+AGG - chr5_3:61789279-61789298 None:intergenic 35.0%
!! CCTTGTTATTGTTCCTGTAA+TGG + chr5_3:61789276-61789295 Msa0823150:CDS 35.0%
TTACAGTGCAACATAGTAGA+AGG - chr5_3:61791035-61791054 None:intergenic 35.0%
CTGCAGATTTGAGGAAAAAA+AGG - chr5_3:61791367-61791386 None:intergenic 35.0%
AGCTTCTTATCTTAACTCCT+TGG + chr5_3:61791558-61791577 Msa0823150:CDS 35.0%
TGACTTGATCAGTTGTGTAA+GGG - chr5_3:61791597-61791616 None:intergenic 35.0%
! AGGCTTAATTTTTCCCTCAT+TGG - chr5_3:61791689-61791708 None:intergenic 35.0%
AGAAAAGGAAAGGGAGGATT+TGG - chr5_3:61789173-61789192 None:intergenic 40.0%
TTTGAGAGAAAAGGAAAGGG+AGG - chr5_3:61789179-61789198 None:intergenic 40.0%
TCTTACCATGTTCACAATGC+TGG + chr5_3:61789234-61789253 Msa0823150:CDS 40.0%
CTTGAAAGCTACACAGTAGT+AGG + chr5_3:61789438-61789457 Msa0823150:intron 40.0%
ATGGGGTTGGATCACAATTT+GGG - chr5_3:61789927-61789946 None:intergenic 40.0%
TTATAACTTCCATCGCCTGA+GGG - chr5_3:61790234-61790253 None:intergenic 40.0%
ATTATAACTTCCATCGCCTG+AGG - chr5_3:61790235-61790254 None:intergenic 40.0%
!! ATGGTGTTGTTGGGGTTATA+GGG - chr5_3:61790515-61790534 None:intergenic 40.0%
!! ATGGTGTTGTTGGGGTTATA+GGG - chr5_3:61790515-61790534 None:intergenic 40.0%
TATAGTAACCTCCTGATGGA+GGG - chr5_3:61790668-61790687 None:intergenic 40.0%
TTATAGTAACCTCCTGATGG+AGG - chr5_3:61790669-61790688 None:intergenic 40.0%
GAGTTATAGTAACCTCCTGA+TGG - chr5_3:61790672-61790691 None:intergenic 40.0%
!! ATGGTGTTGTTGGGGTTAAA+GGG - chr5_3:61790770-61790789 None:intergenic 40.0%
!! AGGATTTGATGGTGTTGTTG+GGG - chr5_3:61790778-61790797 None:intergenic 40.0%
!! GAGGATTTGATGGTGTTGTT+GGG - chr5_3:61790779-61790798 None:intergenic 40.0%
!! ATGGTGTTGTTGGGGTTATA+GGG - chr5_3:61790515-61790534 None:intergenic 40.0%
!! AAGGGTTTGATGGTGTTGTT+GGG - chr5_3:61790845-61790864 None:intergenic 40.0%
!! AAAGGGTTTGATGGTGTTGT+TGG - chr5_3:61790846-61790865 None:intergenic 40.0%
TACAACTCACCACCAACTTA+TGG + chr5_3:61790906-61790925 Msa0823150:CDS 40.0%
ACTTACTTGCATGTACCAGT+GGG - chr5_3:61791011-61791030 None:intergenic 40.0%
AACTTACTTGCATGTACCAG+TGG - chr5_3:61791012-61791031 None:intergenic 40.0%
! CTGACTTGATCAGTTGTGTA+AGG - chr5_3:61791598-61791617 None:intergenic 40.0%
AGCATCACTCAGCTCAAATA+AGG + chr5_3:61791630-61791649 Msa0823150:CDS 40.0%
! ACAAGCACATCTTTTCCAGA+TGG + chr5_3:61791663-61791682 Msa0823150:CDS 40.0%
TGGAGAAGTGAGTGAAGAGT+GGG - chr5_3:61789142-61789161 None:intergenic 45.0%
TTGGAGAAGTGAGTGAAGAG+TGG - chr5_3:61789143-61789162 None:intergenic 45.0%
AAAGGAAAGGGAGGATTTGG+AGG - chr5_3:61789170-61789189 None:intergenic 45.0%
TGCAACCAGCATTGTGAACA+TGG - chr5_3:61789242-61789261 None:intergenic 45.0%
! GTTCACAATGCTGGTTGCAT+TGG + chr5_3:61789243-61789262 Msa0823150:CDS 45.0%
GGTCATGGTCATAGTCATCA+TGG + chr5_3:61789724-61789743 Msa0823150:CDS 45.0%
! GTGATGATGATCCATGACCA+TGG - chr5_3:61789750-61789769 None:intergenic 45.0%
TGTAACTTCCACTGCCTGAA+GGG - chr5_3:61789774-61789793 None:intergenic 45.0%
TTGTAACTTCCACTGCCTGA+AGG - chr5_3:61789775-61789794 None:intergenic 45.0%
GGAGTTGGATTTGATGGAGT+TGG - chr5_3:61789799-61789818 None:intergenic 45.0%
!! ACAATTTGGGGGAGTTGATG+GGG - chr5_3:61789914-61789933 None:intergenic 45.0%
! CACAATTTGGGGGAGTTGAT+GGG - chr5_3:61789915-61789934 None:intergenic 45.0%
TCACAATTTGGGGGAGTTGA+TGG - chr5_3:61789916-61789935 None:intergenic 45.0%
TGGGGTTGGATCACAATTTG+GGG - chr5_3:61789926-61789945 None:intergenic 45.0%
GATGGGGTTGGATCACAATT+TGG - chr5_3:61789928-61789947 None:intergenic 45.0%
TAACTTCCACTACCTGATGG+TGG - chr5_3:61790060-61790079 None:intergenic 45.0%
GTGTAACTTCCACTACCTGA+TGG - chr5_3:61790063-61790082 None:intergenic 45.0%
!! TTGACGGTGTTGATGGTGTT+GGG - chr5_3:61790365-61790384 None:intergenic 45.0%
!! TTGGAGTTGAGGGTGTTGTT+GGG - chr5_3:61790443-61790462 None:intergenic 45.0%
!! GATGGTGTTGTTGGGGTTAT+AGG - chr5_3:61790516-61790535 None:intergenic 45.0%
!! TGGGTTTGATGGTGTTGTTG+GGG - chr5_3:61790523-61790542 None:intergenic 45.0%
!! GTGGGTTTGATGGTGTTGTT+GGG - chr5_3:61790524-61790543 None:intergenic 45.0%
GTTGGGGTTATAGGGTTTGA+TGG - chr5_3:61790570-61790589 None:intergenic 45.0%
!! GTGGTGTTGTTGGGGTTATA+GGG - chr5_3:61790578-61790597 None:intergenic 45.0%
!! GATGGTGTTGTTGGGGTTAT+AGG - chr5_3:61790516-61790535 None:intergenic 45.0%
!! AGGGTTTGATGGTGTTGTTG+GGG - chr5_3:61790649-61790668 None:intergenic 45.0%
!! GAGGGTTTGATGGTGTTGTT+GGG - chr5_3:61790650-61790669 None:intergenic 45.0%
ATGGCGTTGTAGGGGTTATA+GGG - chr5_3:61790707-61790726 None:intergenic 45.0%
!! GATGGTGTTGTTGGGGTTAA+AGG - chr5_3:61790771-61790790 None:intergenic 45.0%
!! GGAGGATTTGATGGTGTTGT+TGG - chr5_3:61790780-61790799 None:intergenic 45.0%
ACACCATCAAATCCTCCATC+AGG + chr5_3:61790783-61790802 Msa0823150:CDS 45.0%
CATCAAATCCTCCATCAGGA+GGG + chr5_3:61790787-61790806 Msa0823150:CDS 45.0%
!! GATGGTGTTGTTGGGGTTAT+AGG - chr5_3:61790516-61790535 None:intergenic 45.0%
!! AGGGTTTGATGGTGTTGTTG+GGG - chr5_3:61790649-61790668 None:intergenic 45.0%
!! ATGGTGTTGTCGGGGTTAAA+GGG - chr5_3:61790863-61790882 None:intergenic 45.0%
TCACCACCAACTTATGGAAG+TGG + chr5_3:61790912-61790931 Msa0823150:CDS 45.0%
! CTACCACTTCCATAAGTTGG+TGG - chr5_3:61790918-61790937 None:intergenic 45.0%
TTCCTCAAATCTGCAGCTAC+TGG + chr5_3:61791371-61791390 Msa0823150:intron 45.0%
TTCCAGTAGCTGCAGATTTG+AGG - chr5_3:61791376-61791395 None:intergenic 45.0%
ATACTCACCCACAACTCATC+TGG + chr5_3:61791395-61791414 Msa0823150:CDS 45.0%
TACTCACCCACAACTCATCT+GGG + chr5_3:61791396-61791415 Msa0823150:CDS 45.0%
GTAATCCCCAGATGAGTTGT+GGG - chr5_3:61791405-61791424 None:intergenic 45.0%
AGTAATCCCCAGATGAGTTG+TGG - chr5_3:61791406-61791425 None:intergenic 45.0%
CAACTCATCTGGGGATTACT+AGG + chr5_3:61791406-61791425 Msa0823150:CDS 45.0%
! GGAACCTTAGGCAATGCTTT+TGG + chr5_3:61791436-61791455 Msa0823150:CDS 45.0%
!! CACACCAAAAGCATTGCCTA+AGG - chr5_3:61791443-61791462 None:intergenic 45.0%
!! CTTGTGTTGGAAAGTGCTTG+TGG - chr5_3:61791502-61791521 None:intergenic 45.0%
AACACAAGAACTGATGCGCT+CGG + chr5_3:61791514-61791533 Msa0823150:CDS 45.0%
!! AGGGAACTTGTTGTTCACCA+AGG - chr5_3:61791578-61791597 None:intergenic 45.0%
! TCTTTTCCAGATGGCCAATG+AGG + chr5_3:61791672-61791691 Msa0823150:CDS 45.0%
! CTTTTCCAGATGGCCAATGA+GGG + chr5_3:61791673-61791692 Msa0823150:CDS 45.0%
! TTTTTCCCTCATTGGCCATC+TGG - chr5_3:61791681-61791700 None:intergenic 45.0%
CAGTGCACTGAATCCATCAT+AGG - chr5_3:61791835-61791854 None:intergenic 45.0%
!! GCTTGAGTGTTGGCCATTAC+AGG - chr5_3:61789292-61789311 None:intergenic 50.0%
! ACTTCCTGCTGCTTGAGTGT+TGG - chr5_3:61789302-61789321 None:intergenic 50.0%
GGTCATAGTCATCATGGCCA+TGG + chr5_3:61789730-61789749 Msa0823150:CDS 50.0%
AGTCATCATGGCCATGGTCA+TGG + chr5_3:61789736-61789755 Msa0823150:CDS 50.0%
TAACTTCCACTGCCTGAAGG+GGG - chr5_3:61789772-61789791 None:intergenic 50.0%
GTAACTTCCACTGCCTGAAG+GGG - chr5_3:61789773-61789792 None:intergenic 50.0%
!! GGTGACGGAGTTGGATTTGA+TGG - chr5_3:61789805-61789824 None:intergenic 50.0%
CTGTAACTTCCACTGCCTGA+CGG - chr5_3:61789829-61789848 None:intergenic 50.0%
!! TGATGGGGTAGGAGTTGATG+GGG - chr5_3:61789857-61789876 None:intergenic 50.0%
! GTGATGGGGTAGGAGTTGAT+GGG - chr5_3:61789858-61789877 None:intergenic 50.0%
GAACTTCCACCACCATCTGA+GGG - chr5_3:61789883-61789902 None:intergenic 50.0%
AGAACTTCCACCACCATCTG+AGG - chr5_3:61789884-61789903 None:intergenic 50.0%
GGGGTTGGATCACAATTTGG+GGG - chr5_3:61789925-61789944 None:intergenic 50.0%
ACTGTAACTTCCGTCACCAC+CGG - chr5_3:61789953-61789972 None:intergenic 50.0%
TAACTTCCACCACCATCCGA+TGG - chr5_3:61790006-61790025 None:intergenic 50.0%
!! ACTACCTGATGGTGGTGATG+GGG - chr5_3:61790052-61790071 None:intergenic 50.0%
!! CACTACCTGATGGTGGTGAT+GGG - chr5_3:61790053-61790072 None:intergenic 50.0%
TTCCATCACCACCTGGTGAT+GGG - chr5_3:61790149-61790168 None:intergenic 50.0%
GTGTAACTTCCATCACCACC+TGG - chr5_3:61790156-61790175 None:intergenic 50.0%
TCATAACTTCCACCTCCTGG+AGG - chr5_3:61790195-61790214 None:intergenic 50.0%
GGATCATAACTTCCACCTCC+TGG - chr5_3:61790198-61790217 None:intergenic 50.0%
GGAGTGTAACTTCCACCAGT+GGG - chr5_3:61790273-61790292 None:intergenic 50.0%
TGGAGTGTAACTTCCACCAG+TGG - chr5_3:61790274-61790293 None:intergenic 50.0%
!! GTTGATGGTGTTGGGTCTGA+GGG - chr5_3:61790357-61790376 None:intergenic 50.0%
!! TGTTGATGGTGTTGGGTCTG+AGG - chr5_3:61790358-61790377 None:intergenic 50.0%
!! CTTGACGGTGTTGATGGTGT+TGG - chr5_3:61790366-61790385 None:intergenic 50.0%
TAGTACCCTCCATCTCCTGA+GGG - chr5_3:61790393-61790412 None:intergenic 50.0%
ATAGTACCCTCCATCTCCTG+AGG - chr5_3:61790394-61790413 None:intergenic 50.0%
GTTGGGCTTGTAGGATCTTG+TGG - chr5_3:61790426-61790445 None:intergenic 50.0%
!! GTTGGAGTTGAGGGTGTTGT+TGG - chr5_3:61790444-61790463 None:intergenic 50.0%
GATGGGGTTGTTGGAGTTGA+GGG - chr5_3:61790453-61790472 None:intergenic 50.0%
TGATGGGGTTGTTGGAGTTG+AGG - chr5_3:61790454-61790473 None:intergenic 50.0%
GTTGGGGTTATAGGGTCTGA+TGG - chr5_3:61790507-61790526 None:intergenic 50.0%
!! GGTGGGTTTGATGGTGTTGT+TGG - chr5_3:61790525-61790544 None:intergenic 50.0%
ACACCATCAAACCCACCATC+AGG + chr5_3:61790528-61790547 Msa0823150:CDS 50.0%
GGGGTTATAGGGTTTGATGG+TGG - chr5_3:61790567-61790586 None:intergenic 50.0%
!! GGTGGTGTTGTTGGGGTTAT+AGG - chr5_3:61790579-61790598 None:intergenic 50.0%
!! AGGGTTTGGTGGTGTTGTTG+GGG - chr5_3:61790586-61790605 None:intergenic 50.0%
!! GAGGGTTTGGTGGTGTTGTT+GGG - chr5_3:61790587-61790606 None:intergenic 50.0%
GTTGGGGTTATAGGGTCTGA+TGG - chr5_3:61790507-61790526 None:intergenic 50.0%
!! GGAGGGTTTGATGGTGTTGT+TGG - chr5_3:61790651-61790670 None:intergenic 50.0%
ACACCATCAAACCCTCCATC+AGG + chr5_3:61790654-61790673 Msa0823150:CDS 50.0%
GTAGGGGTTATAGGGTCTTG+TGG - chr5_3:61790699-61790718 None:intergenic 50.0%
GATGGCGTTGTAGGGGTTAT+AGG - chr5_3:61790708-61790727 None:intergenic 50.0%
!! AGGGTTTGATGGCGTTGTAG+GGG - chr5_3:61790715-61790734 None:intergenic 50.0%
!! GAGGGTTTGATGGCGTTGTA+GGG - chr5_3:61790716-61790735 None:intergenic 50.0%
GTTGGGGTTAAAGGGTCTGT+TGG - chr5_3:61790762-61790781 None:intergenic 50.0%
CCTCCTGATGGAGGATTTGA+TGG - chr5_3:61790789-61790808 None:intergenic 50.0%
CCATCAAATCCTCCATCAGG+AGG + chr5_3:61790786-61790805 Msa0823150:CDS 50.0%
TTGTAGTACCCTCCTGATGG+AGG - chr5_3:61790798-61790817 None:intergenic 50.0%
GAGTTGTAGTACCCTCCTGA+TGG - chr5_3:61790801-61790820 None:intergenic 50.0%
GTTGGGGTTATAGGGTCTTG+TGG - chr5_3:61790828-61790847 None:intergenic 50.0%
GTCGGGGTTAAAGGGTTTGA+TGG - chr5_3:61790855-61790874 None:intergenic 50.0%
!! GATGGTGTTGTCGGGGTTAA+AGG - chr5_3:61790864-61790883 None:intergenic 50.0%
!! AGGGTTTGATGGTGTTGTCG+GGG - chr5_3:61790871-61790890 None:intergenic 50.0%
!! GAGGGTTTGATGGTGTTGTC+GGG - chr5_3:61790872-61790891 None:intergenic 50.0%
!! GGAGGGTTTGATGGTGTTGT+CGG - chr5_3:61790651-61790670 None:intergenic 50.0%
ACACCATCAAACCCTCCATC+AGG + chr5_3:61790654-61790673 Msa0823150:CDS 50.0%
CATCAAACCCTCCATCAGGA+GGG + chr5_3:61790658-61790677 Msa0823150:CDS 50.0%
TGTAGTACCCTCCTGATGGA+GGG - chr5_3:61790797-61790816 None:intergenic 50.0%
TTGTAGTACCCTCCTGATGG+AGG - chr5_3:61790798-61790817 None:intergenic 50.0%
GAGTTGTAGTACCCTCCTGA+TGG - chr5_3:61790801-61790820 None:intergenic 50.0%
GGGCTACCACTTCCATAAGT+TGG - chr5_3:61790921-61790940 None:intergenic 50.0%
AAAGGTGGTGTGGGGAAAGT+GGG - chr5_3:61790972-61790991 None:intergenic 50.0%
TTGCATGTACCAGTGGGAGA+TGG - chr5_3:61791005-61791024 None:intergenic 50.0%
ACTCACCCACAACTCATCTG+GGG + chr5_3:61791397-61791416 Msa0823150:CDS 50.0%
TCATCTGGGGATTACTAGGC+TGG + chr5_3:61791410-61791429 Msa0823150:CDS 50.0%
! TTTGGTGTGCATAGTCTGCC+AGG + chr5_3:61791454-61791473 Msa0823150:CDS 50.0%
GAGCGCATCAGTTCTTGTGT+TGG - chr5_3:61791515-61791534 None:intergenic 50.0%
! CTCGGAGCACTTTACAGAGA+AGG + chr5_3:61791532-61791551 Msa0823150:CDS 50.0%
GGGAGGATTTGGAGGTGGTT+TGG - chr5_3:61789162-61789181 None:intergenic 55.0%
GGAAAGGGAGGATTTGGAGG+TGG - chr5_3:61789167-61789186 None:intergenic 55.0%
ATGGCCAACACTCAAGCAGC+AGG + chr5_3:61789295-61789314 Msa0823150:CDS 55.0%
TACCACAACCACCTCCTGAG+TGG - chr5_3:61789627-61789646 None:intergenic 55.0%
GGATCATCATCACCCCCTTC+AGG + chr5_3:61789757-61789776 Msa0823150:CDS 55.0%
TAACTTCCACTGCCTGACGG+TGG - chr5_3:61789826-61789845 None:intergenic 55.0%
!! GGTGATGGGGTAGGAGTTGA+TGG - chr5_3:61789859-61789878 None:intergenic 55.0%
! ACCATCTGAGGGTGGTGATG+GGG - chr5_3:61789872-61789891 None:intergenic 55.0%
CACCATCTGAGGGTGGTGAT+GGG - chr5_3:61789873-61789892 None:intergenic 55.0%
!! TTTGGGGGAGTTGATGGGGT+TGG - chr5_3:61789910-61789929 None:intergenic 55.0%
TGTGATCCAACCCCATCACC+CGG + chr5_3:61789931-61789950 Msa0823150:CDS 55.0%
CTGTAACTTCCGTCACCACC+GGG - chr5_3:61789952-61789971 None:intergenic 55.0%
!! TGATGGGGTGGGAGTTGATG+GGG - chr5_3:61789980-61789999 None:intergenic 55.0%
! GTGATGGGGTGGGAGTTGAT+GGG - chr5_3:61789981-61790000 None:intergenic 55.0%
! ACCATCCGATGGTGGTGATG+GGG - chr5_3:61789995-61790014 None:intergenic 55.0%
! CACCATCCGATGGTGGTGAT+GGG - chr5_3:61789996-61790015 None:intergenic 55.0%
!! GGGGTTGGAGTTGATGGTGT+TGG - chr5_3:61790033-61790052 None:intergenic 55.0%
!! GGTGATGGGGTTGGAGTTGA+TGG - chr5_3:61790039-61790058 None:intergenic 55.0%
!! CCACTACCTGATGGTGGTGA+TGG - chr5_3:61790054-61790073 None:intergenic 55.0%
CCATCACCACCATCAGGTAG+TGG + chr5_3:61790051-61790070 Msa0823150:CDS 55.0%
TGATGGGGTAGGAGTTGACG+GGG - chr5_3:61790091-61790110 None:intergenic 55.0%
! GTGATGGGGTAGGAGTTGAC+GGG - chr5_3:61790092-61790111 None:intergenic 55.0%
!! GGTGATGGGGTAGGAGTTGA+CGG - chr5_3:61789859-61789878 None:intergenic 55.0%
! ACCATCTGAGGGTGGTGATG+GGG - chr5_3:61789872-61789891 None:intergenic 55.0%
CACCATCTGAGGGTGGTGAT+GGG - chr5_3:61789873-61789892 None:intergenic 55.0%
GAACTTCCGCCACCATCTGA+GGG - chr5_3:61790117-61790136 None:intergenic 55.0%
AGAACTTCCGCCACCATCTG+AGG - chr5_3:61790118-61790137 None:intergenic 55.0%
! TCCATCACCACCTGGTGATG+GGG - chr5_3:61790148-61790167 None:intergenic 55.0%
CTTCCATCACCACCTGGTGA+TGG - chr5_3:61790150-61790169 None:intergenic 55.0%
!! CCTGGAGGAGTTGATGGAGT+TGG - chr5_3:61790180-61790199 None:intergenic 55.0%
CCAACTCCATCAACTCCTCC+AGG + chr5_3:61790177-61790196 Msa0823150:CDS 55.0%
ACTCCATCAACTCCTCCAGG+AGG + chr5_3:61790180-61790199 Msa0823150:CDS 55.0%
TAACTTCCATCGCCTGAGGG+TGG - chr5_3:61790231-61790250 None:intergenic 55.0%
TTCCACCAGTGGGTGGTGAT+GGG - chr5_3:61790263-61790282 None:intergenic 55.0%
GTGTAACTTCCACCAGTGGG+TGG - chr5_3:61790270-61790289 None:intergenic 55.0%
AGGGTGGACAATCGCTAGCT+GGG - chr5_3:61790311-61790330 None:intergenic 55.0%
!! AGGGTGTTGTCGGGCTTGTA+GGG - chr5_3:61790338-61790357 None:intergenic 55.0%
!! TTGGGTCTGAGGGTGTTGTC+GGG - chr5_3:61790347-61790366 None:intergenic 55.0%
!! GTTGGGTCTGAGGGTGTTGT+CGG - chr5_3:61790348-61790367 None:intergenic 55.0%
GGGCTTGTAGGATCTTGTGG+TGG - chr5_3:61790423-61790442 None:intergenic 55.0%
!! GAGGGTGTTGTTGGGCTTGT+AGG - chr5_3:61790435-61790454 None:intergenic 55.0%
GGAGGGTTTGATGGGGTTGT+TGG - chr5_3:61790462-61790481 None:intergenic 55.0%
ACCCCATCAAACCCTCCATC+AGG + chr5_3:61790465-61790484 Msa0823150:CDS 55.0%
CCCTGATGGAGGGTTTGATG+GGG - chr5_3:61790469-61790488 None:intergenic 55.0%
CCCCATCAAACCCTCCATCA+GGG + chr5_3:61790466-61790485 Msa0823150:CDS 55.0%
CCCCTGATGGAGGGTTTGAT+GGG - chr5_3:61790470-61790489 None:intergenic 55.0%
CCCATCAAACCCTCCATCAG+GGG + chr5_3:61790467-61790486 Msa0823150:CDS 55.0%
CCATCAAACCCTCCATCAGG+GGG + chr5_3:61790468-61790487 Msa0823150:CDS 55.0%
GGGGTTATAGGGTCTGATGG+TGG - chr5_3:61790504-61790523 None:intergenic 55.0%
!! CCTCCTGATGGTGGGTTTGA+TGG - chr5_3:61790534-61790553 None:intergenic 55.0%
CCATCAAACCCACCATCAGG+AGG + chr5_3:61790531-61790550 Msa0823150:CDS 55.0%
AGTCGTAGCCTCCTGATGGT+GGG - chr5_3:61790542-61790561 None:intergenic 55.0%
!! GGAGGGTTTGGTGGTGTTGT+TGG - chr5_3:61790588-61790607 None:intergenic 55.0%
ACACCACCAAACCCTCCATC+AGG + chr5_3:61790591-61790610 Msa0823150:CDS 55.0%
TAGCCTCCTGATGGAGGGTT+TGG - chr5_3:61790600-61790619 None:intergenic 55.0%
AGTCGTAGCCTCCTGATGGA+GGG - chr5_3:61790605-61790624 None:intergenic 55.0%
GGGGTTATAGGGTCTGATGG+TGG - chr5_3:61790504-61790523 None:intergenic 55.0%
CCTCCTGATGGAGGGTTTGA+TGG - chr5_3:61790660-61790679 None:intergenic 55.0%
CCATCAAACCCTCCATCAGG+AGG + chr5_3:61790468-61790487 Msa0823150:CDS 55.0%
! GGGGTTATAGGGTCTTGTGG+TGG - chr5_3:61790696-61790715 None:intergenic 55.0%
!! GGAGGGTTTGATGGCGTTGT+AGG - chr5_3:61790717-61790736 None:intergenic 55.0%
GGGGTTAAAGGGTCTGTTGG+TGG - chr5_3:61790759-61790778 None:intergenic 55.0%
! GGGGTTATAGGGTCTTGTGG+TGG - chr5_3:61790696-61790715 None:intergenic 55.0%
CCTCCTGATGGAGGGTTTGA+TGG - chr5_3:61790660-61790679 None:intergenic 55.0%
CCATCAAACCCTCCATCAGG+AGG + chr5_3:61790468-61790487 Msa0823150:CDS 55.0%
! AATGGGGTGCCAGGATCGAT+CGG - chr5_3:61790945-61790964 None:intergenic 55.0%
TGGGGAAAGTGGGGGTCAAT+GGG - chr5_3:61790962-61790981 None:intergenic 55.0%
AAGGTGGTGTGGGGAAAGTG+GGG - chr5_3:61790971-61790990 None:intergenic 55.0%
GAAAGGTGGTGTGGGGAAAG+TGG - chr5_3:61790973-61790992 None:intergenic 55.0%
CAGGAAGGAAAGGTGGTGTG+GGG - chr5_3:61790980-61790999 None:intergenic 55.0%
GCAGGAAGGAAAGGTGGTGT+GGG - chr5_3:61790981-61791000 None:intergenic 55.0%
TGCAGGAAGGAAAGGTGGTG+TGG - chr5_3:61790982-61791001 None:intergenic 55.0%
GATGGTGCAGGAAGGAAAGG+TGG - chr5_3:61790987-61791006 None:intergenic 55.0%
GGAGATGGTGCAGGAAGGAA+AGG - chr5_3:61790990-61791009 None:intergenic 55.0%
TCTGGGGATTACTAGGCTGG+TGG + chr5_3:61791413-61791432 Msa0823150:CDS 55.0%
CTGGGGATTACTAGGCTGGT+GGG + chr5_3:61791414-61791433 Msa0823150:CDS 55.0%
TGGGGATTACTAGGCTGGTG+GGG + chr5_3:61791415-61791434 Msa0823150:CDS 55.0%
GTGCATAGTCTGCCAGGACT+CGG + chr5_3:61791460-61791479 Msa0823150:CDS 55.0%
AGTCCACCACCTCACCACTC+AGG + chr5_3:61789610-61789629 Msa0823150:CDS 60.0%
CAACCACCTCCTGAGTGGTG+AGG - chr5_3:61789622-61789641 None:intergenic 60.0%
CACCACTCAGGAGGTGGTTG+TGG + chr5_3:61789622-61789641 Msa0823150:CDS 60.0%
GGAGGTGGTTGTGGTAGCAG+TGG + chr5_3:61789631-61789650 Msa0823150:CDS 60.0%
AGTGGCACTCCACCCTCTAG+TGG + chr5_3:61789649-61789668 Msa0823150:CDS 60.0%
ACTCCACCCTCTAGTGGCAG+TGG + chr5_3:61789655-61789674 Msa0823150:CDS 60.0%
! GGAGTGCCACTGCCACTAGA+GGG - chr5_3:61789664-61789683 None:intergenic 60.0%
! TGGAGTGCCACTGCCACTAG+AGG - chr5_3:61789665-61789684 None:intergenic 60.0%
AGTGGCACTCCACCCTCTAG+TGG + chr5_3:61789649-61789668 Msa0823150:CDS 60.0%
GTGGCACTCCACCCTCTAGT+GGG + chr5_3:61789650-61789669 Msa0823150:CDS 60.0%
GAGGGTGAGGACCCACTAGA+GGG - chr5_3:61789688-61789707 None:intergenic 60.0%
AGAGGGTGAGGACCCACTAG+AGG - chr5_3:61789689-61789708 None:intergenic 60.0%
AGTGGGTCCTCACCCTCTCA+CGG + chr5_3:61789691-61789710 Msa0823150:CDS 60.0%
TCCTCACCCTCTCACGGTCA+CGG + chr5_3:61789697-61789716 Msa0823150:CDS 60.0%
TCATCACCCCCTTCAGGCAG+TGG + chr5_3:61789763-61789782 Msa0823150:CDS 60.0%
!! GGGGTAGGAGTTGATGGGGT+TGG - chr5_3:61789853-61789872 None:intergenic 60.0%
!! TCTGAGGGTGGTGATGGGGT+AGG - chr5_3:61789868-61789887 None:intergenic 60.0%
ACCCCATCACCACCCTCAGA+TGG + chr5_3:61789868-61789887 Msa0823150:CDS 60.0%
CCACCATCTGAGGGTGGTGA+TGG - chr5_3:61789874-61789893 None:intergenic 60.0%
CCATCACCACCCTCAGATGG+TGG + chr5_3:61789871-61789890 Msa0823150:CDS 60.0%
! TCACCACCCTCAGATGGTGG+TGG + chr5_3:61789874-61789893 Msa0823150:CDS 60.0%
CTTCCACCACCATCTGAGGG+TGG - chr5_3:61789880-61789899 None:intergenic 60.0%
TTCCGTCACCACCGGGTGAT+GGG - chr5_3:61789945-61789964 None:intergenic 60.0%
!! GGTGATGGGGTGGGAGTTGA+TGG - chr5_3:61789982-61790001 None:intergenic 60.0%
TCCCACCCCATCACCACCAT+CGG + chr5_3:61789987-61790006 Msa0823150:CDS 60.0%
!! TCCGATGGTGGTGATGGGGT+GGG - chr5_3:61789991-61790010 None:intergenic 60.0%
!! ATCCGATGGTGGTGATGGGG+TGG - chr5_3:61789992-61790011 None:intergenic 60.0%
ACCCCATCACCACCATCGGA+TGG + chr5_3:61789991-61790010 Msa0823150:CDS 60.0%
! CCACCATCCGATGGTGGTGA+TGG - chr5_3:61789997-61790016 None:intergenic 60.0%
CCATCACCACCATCGGATGG+TGG + chr5_3:61789994-61790013 Msa0823150:CDS 60.0%
! TCACCACCATCGGATGGTGG+TGG + chr5_3:61789997-61790016 Msa0823150:CDS 60.0%
CTTCCACCACCATCCGATGG+TGG - chr5_3:61790003-61790022 None:intergenic 60.0%
!! CCTGATGGTGGTGATGGGGT+TGG - chr5_3:61790048-61790067 None:intergenic 60.0%
CCAACCCCATCACCACCATC+AGG + chr5_3:61790045-61790064 Msa0823150:CDS 60.0%
!! TCTGAGGGTGGTGATGGGGT+AGG - chr5_3:61789868-61789887 None:intergenic 60.0%
ACCCCATCACCACCCTCAGA+TGG + chr5_3:61789868-61789887 Msa0823150:CDS 60.0%
CCACCATCTGAGGGTGGTGA+TGG - chr5_3:61789874-61789893 None:intergenic 60.0%
CCATCACCACCCTCAGATGG+TGG + chr5_3:61789871-61789890 Msa0823150:CDS 60.0%
! TCACCACCCTCAGATGGTGG+CGG + chr5_3:61789874-61789893 Msa0823150:CDS 60.0%
TCTGACCCAACCCCATCACC+AGG + chr5_3:61790135-61790154 Msa0823150:CDS 60.0%
!! CACCACCTGGTGATGGGGTT+GGG - chr5_3:61790143-61790162 None:intergenic 60.0%
!! TCACCACCTGGTGATGGGGT+TGG - chr5_3:61790144-61790163 None:intergenic 60.0%
ACCCCATCACCAGGTGGTGA+TGG + chr5_3:61790144-61790163 Msa0823150:CDS 60.0%
CCACCTCCTGGAGGAGTTGA+TGG - chr5_3:61790186-61790205 None:intergenic 60.0%
CCATCAACTCCTCCAGGAGG+TGG + chr5_3:61790183-61790202 Msa0823150:CDS 60.0%
! ATCGCCTGAGGGTGGTGTTG+GGG - chr5_3:61790223-61790242 None:intergenic 60.0%
CATCGCCTGAGGGTGGTGTT+GGG - chr5_3:61790224-61790243 None:intergenic 60.0%
! TCCACCAGTGGGTGGTGATG+GGG - chr5_3:61790262-61790281 None:intergenic 60.0%
CTTCCACCAGTGGGTGGTGA+TGG - chr5_3:61790264-61790283 None:intergenic 60.0%
GGTGGACAATCGCTAGCTGG+GGG - chr5_3:61790309-61790328 None:intergenic 60.0%
GGGTGGACAATCGCTAGCTG+GGG - chr5_3:61790310-61790329 None:intergenic 60.0%
GAGGGTGGACAATCGCTAGC+TGG - chr5_3:61790312-61790331 None:intergenic 60.0%
GTCGGGCTTGTAGGGTCTGA+GGG - chr5_3:61790330-61790349 None:intergenic 60.0%
TGTCGGGCTTGTAGGGTCTG+AGG - chr5_3:61790331-61790350 None:intergenic 60.0%
!! GAGGGTGTTGTCGGGCTTGT+AGG - chr5_3:61790339-61790358 None:intergenic 60.0%
! GGAGGGCTTGACGGTGTTGA+TGG - chr5_3:61790372-61790391 None:intergenic 60.0%
TCTCCTGAGGGAGGGCTTGA+CGG - chr5_3:61790381-61790400 None:intergenic 60.0%
TCAAGCCCTCCCTCAGGAGA+TGG + chr5_3:61790381-61790400 Msa0823150:CDS 60.0%
ACCCTCCATCTCCTGAGGGA+GGG - chr5_3:61790389-61790408 None:intergenic 60.0%
TACCCTCCATCTCCTGAGGG+AGG - chr5_3:61790390-61790409 None:intergenic 60.0%
CCCCCTGATGGAGGGTTTGA+TGG - chr5_3:61790471-61790490 None:intergenic 60.0%
AGTCGTAGCCCCCTGATGGA+GGG - chr5_3:61790479-61790498 None:intergenic 60.0%
GAGTCGTAGCCTCCTGATGG+TGG - chr5_3:61790543-61790562 None:intergenic 60.0%
GGTGAGTCGTAGCCTCCTGA+TGG - chr5_3:61790546-61790565 None:intergenic 60.0%
CCTCCTGATGGAGGGTTTGG+TGG - chr5_3:61790597-61790616 None:intergenic 60.0%
CCACCAAACCCTCCATCAGG+AGG + chr5_3:61790594-61790613 Msa0823150:CDS 60.0%
GAGTCGTAGCCTCCTGATGG+AGG - chr5_3:61790543-61790562 None:intergenic 60.0%
GGTGAGTCGTAGCCTCCTGA+TGG - chr5_3:61790546-61790565 None:intergenic 60.0%
ACGCCATCAAACCCTCCGTC+AGG + chr5_3:61790720-61790739 Msa0823150:CDS 60.0%
CCTCCTGACGGAGGGTTTGA+TGG - chr5_3:61790726-61790745 None:intergenic 60.0%
CCATCAAACCCTCCGTCAGG+AGG + chr5_3:61790723-61790742 Msa0823150:CDS 60.0%
AGTCGTAGCCTCCTGACGGA+GGG - chr5_3:61790734-61790753 None:intergenic 60.0%
GGTGAGTCGTAGCCTCCTGA+CGG - chr5_3:61790546-61790565 None:intergenic 60.0%
! ATGGGGTGCCAGGATCGATC+GGG - chr5_3:61790944-61790963 None:intergenic 60.0%
GGGGAAAGTGGGGGTCAATG+GGG - chr5_3:61790961-61790980 None:intergenic 60.0%
GTGGGGAAAGTGGGGGTCAA+TGG - chr5_3:61790963-61790982 None:intergenic 60.0%
AGGTGGTGTGGGGAAAGTGG+GGG - chr5_3:61790970-61790989 None:intergenic 60.0%
CAGTGGGAGATGGTGCAGGA+AGG - chr5_3:61790995-61791014 None:intergenic 60.0%
CTTCCTGCACCATCTCCCAC+TGG + chr5_3:61790993-61791012 Msa0823150:CDS 60.0%
GTACCAGTGGGAGATGGTGC+AGG - chr5_3:61790999-61791018 None:intergenic 60.0%
CTAGGCTGGTGGGGAACCTT+AGG + chr5_3:61791424-61791443 Msa0823150:CDS 60.0%
CTGAGACTTGCACCGAGTCC+TGG - chr5_3:61791475-61791494 None:intergenic 60.0%
CCTCCTGAGTGGTGAGGTGG+TGG - chr5_3:61789616-61789635 None:intergenic 65.0%
CCACCACCTCACCACTCAGG+AGG + chr5_3:61789613-61789632 Msa0823150:CDS 65.0%
CCACCTCCTGAGTGGTGAGG+TGG - chr5_3:61789619-61789638 None:intergenic 65.0%
CCACCTCACCACTCAGGAGG+TGG + chr5_3:61789616-61789635 Msa0823150:CDS 65.0%
! GTGCCACTGCCACTAGAGGG+TGG - chr5_3:61789661-61789680 None:intergenic 65.0%
GGTGAGGACCCACTAGAGGG+TGG - chr5_3:61789685-61789704 None:intergenic 65.0%
ACCGTGACCGTGAGAGGGTG+AGG - chr5_3:61789701-61789720 None:intergenic 65.0%
CCGTGACCGTGACCGTGAGA+GGG - chr5_3:61789706-61789725 None:intergenic 65.0%
CCCTCTCACGGTCACGGTCA+CGG + chr5_3:61789703-61789722 Msa0823150:CDS 65.0%
ACCGTGACCGTGACCGTGAG+AGG - chr5_3:61789707-61789726 None:intergenic 65.0%
CACGGTCACGGTCACGGTCA+TGG + chr5_3:61789709-61789728 Msa0823150:CDS 65.0%
!! CCTGACGGTGGTGACGGAGT+TGG - chr5_3:61789814-61789833 None:intergenic 65.0%
CCAACTCCGTCACCACCGTC+AGG + chr5_3:61789811-61789830 Msa0823150:CDS 65.0%
CCACTGCCTGACGGTGGTGA+CGG - chr5_3:61789820-61789839 None:intergenic 65.0%
GATCCAACCCCATCACCCGG+TGG + chr5_3:61789934-61789953 Msa0823150:CDS 65.0%
!! TCACCACCGGGTGATGGGGT+TGG - chr5_3:61789940-61789959 None:intergenic 65.0%
ACCCCATCACCCGGTGGTGA+CGG + chr5_3:61789940-61789959 Msa0823150:CDS 65.0%
TCCGTCACCACCGGGTGATG+GGG - chr5_3:61789944-61789963 None:intergenic 65.0%
CTTCCGTCACCACCGGGTGA+TGG - chr5_3:61789946-61789965 None:intergenic 65.0%
!! GGGGTGGGAGTTGATGGGGT+GGG - chr5_3:61789976-61789995 None:intergenic 65.0%
!! TGGGGTGGGAGTTGATGGGG+TGG - chr5_3:61789977-61789996 None:intergenic 65.0%
GGGGTAGGAGTTGACGGGGT+CGG - chr5_3:61790087-61790106 None:intergenic 65.0%
CTTCCGCCACCATCTGAGGG+TGG - chr5_3:61790114-61790133 None:intergenic 65.0%
GACCCAACCCCATCACCAGG+TGG + chr5_3:61790138-61790157 Msa0823150:CDS 65.0%
! CCTGAGGGTGGTGTTGGGGA+TGG - chr5_3:61790219-61790238 None:intergenic 65.0%
CCATCCCCAACACCACCCTC+AGG + chr5_3:61790216-61790235 Msa0823150:CDS 65.0%
CCATCGCCTGAGGGTGGTGT+TGG - chr5_3:61790225-61790244 None:intergenic 65.0%
CCAACACCACCCTCAGGCGA+TGG + chr5_3:61790222-61790241 Msa0823150:CDS 65.0%
!! CCAGTGGGTGGTGATGGGGT+TGG - chr5_3:61790258-61790277 None:intergenic 65.0%
CCAACCCCATCACCACCCAC+TGG + chr5_3:61790255-61790274 Msa0823150:CDS 65.0%
ACCCCATCACCACCCACTGG+TGG + chr5_3:61790258-61790277 Msa0823150:CDS 65.0%
!! GCTGGGGGTGTCGATGGAGT+TGG - chr5_3:61790294-61790313 None:intergenic 65.0%
!! TCGCTAGCTGGGGGTGTCGA+TGG - chr5_3:61790300-61790319 None:intergenic 65.0%
GGGCTTGTAGGGTCTGAGGG+TGG - chr5_3:61790327-61790346 None:intergenic 65.0%
ACACCGTCAAGCCCTCCCTC+AGG + chr5_3:61790375-61790394 Msa0823150:CDS 65.0%
AGCCCTCCCTCAGGAGATGG+AGG + chr5_3:61790384-61790403 Msa0823150:CDS 65.0%
GCCCTCCCTCAGGAGATGGA+GGG + chr5_3:61790385-61790404 Msa0823150:CDS 65.0%
GAGTCGTAGCCCCCTGATGG+AGG - chr5_3:61790480-61790499 None:intergenic 65.0%
GGTGAGTCGTAGCCCCCTGA+TGG - chr5_3:61790483-61790502 None:intergenic 65.0%
GAGTCGTAGCCTCCTGACGG+AGG - chr5_3:61790735-61790754 None:intergenic 65.0%
! TGGGGTGCCAGGATCGATCG+GGG - chr5_3:61790943-61790962 None:intergenic 65.0%
CCGTCACCACCGTCAGGCAG+TGG + chr5_3:61789817-61789836 Msa0823150:CDS 70.0%
GGTAGCCCCCCGATCGATCC+TGG + chr5_3:61790933-61790952 Msa0823150:CDS 70.0%
GGGTGCCAGGATCGATCGGG+GGG - chr5_3:61790941-61790960 None:intergenic 70.0%
! GGGGTGCCAGGATCGATCGG+GGG - chr5_3:61790942-61790961 None:intergenic 70.0%
! GTGGGGGTCAATGGGGTGCC+AGG - chr5_3:61790954-61790973 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 61789137 61791930 61789137 ID=Msa0823150;Name=Msa0823150
chr5_3 mRNA 61789137 61791930 61789137 ID=Msa0823150-mRNA-1;Parent=Msa0823150;Name=Msa0823150-mRNA-1;_AED=0.20;_eAED=0.00;_QI=68|1|0.66|1|1|1|3|213|632
chr5_3 exon 61789137 61789349 61789137 ID=Msa0823150-mRNA-1:exon:19103;Parent=Msa0823150-mRNA-1
chr5_3 exon 61789602 61791024 61789602 ID=Msa0823150-mRNA-1:exon:19104;Parent=Msa0823150-mRNA-1
chr5_3 exon 61791387 61791930 61791387 ID=Msa0823150-mRNA-1:exon:19105;Parent=Msa0823150-mRNA-1
chr5_3 five_prime_UTR 61789137 61789204 61789137 ID=Msa0823150-mRNA-1:five_prime_utr;Parent=Msa0823150-mRNA-1
chr5_3 CDS 61789205 61789349 61789205 ID=Msa0823150-mRNA-1:cds;Parent=Msa0823150-mRNA-1
chr5_3 CDS 61789602 61791024 61789602 ID=Msa0823150-mRNA-1:cds;Parent=Msa0823150-mRNA-1
chr5_3 CDS 61791387 61791717 61791387 ID=Msa0823150-mRNA-1:cds;Parent=Msa0823150-mRNA-1
chr5_3 three_prime_UTR 61791718 61791930 61791718 ID=Msa0823150-mRNA-1:three_prime_utr;Parent=Msa0823150-mRNA-1
Gene Sequence

>Msa0823150

ATGGAGAAGAAAAGAAGCAACAATGCTTCTCTTACCATGTTCACAATGCTGGTTGCATTGGTTTCTCAAAACCTTGTTATTGTTCCTGTAATGGCCAACACTCAAGCAGCAGGAAGTTCTCCCTCAGATTTATCTACTGAACTATGTTCACATAGTCCACCACCTCACCACTCAGGAGGTGGTTGTGGTAGCAGTGGCACTCCACCCTCTAGTGGCAGTGGCACTCCACCCTCTAGTGGGTCCTCACCCTCTCACGGTCACGGTCACGGTCATGGTCATAGTCATCATGGCCATGGTCATGGATCATCATCACCCCCTTCAGGCAGTGGAAGTTACAATCCAACTCCATCAAATCCAACTCCGTCACCACCGTCAGGCAGTGGAAGTTACAGTCCAACCCCATCAACTCCTACCCCATCACCACCCTCAGATGGTGGTGGAAGTTCTGATCCAACCCCATCAACTCCCCCAAATTGTGATCCAACCCCATCACCCGGTGGTGACGGAAGTTACAGTCCCACCCCATCAACTCCCACCCCATCACCACCATCGGATGGTGGTGGAAGTTACAATCCAACACCATCAACTCCAACCCCATCACCACCATCAGGTAGTGGAAGTTACACTCCGACCCCGTCAACTCCTACCCCATCACCACCCTCAGATGGTGGCGGAAGTTCTGACCCAACCCCATCACCAGGTGGTGATGGAAGTTACACTCCAACTCCATCAACTCCTCCAGGAGGTGGAAGTTATGATCCATCCCCAACACCACCCTCAGGCGATGGAAGTTATAATCCAACCCCATCACCACCCACTGGTGGAAGTTACACTCCAACTCCATCGACACCCCCAGCTAGCGATTGTCCACCCTCAGACCCTACAAGCCCGACAACACCCTCAGACCCAACACCATCAACACCGTCAAGCCCTCCCTCAGGAGATGGAGGGTACTATAACTCACCACCACAAGATCCTACAAGCCCAACAACACCCTCAACTCCAACAACCCCATCAAACCCTCCATCAGGGGGCTACGACTCACCACCATCAGACCCTATAACCCCAACAACACCATCAAACCCACCATCAGGAGGCTACGACTCACCACCATCAAACCCTATAACCCCAACAACACCACCAAACCCTCCATCAGGAGGCTACGACTCACCACCATCAGACCCTATAACCCCAACAACACCATCAAACCCTCCATCAGGAGGTTACTATAACTCACCACCACAAGACCCTATAACCCCTACAACGCCATCAAACCCTCCGTCAGGAGGCTACGACTCACCACCAACAGACCCTTTAACCCCAACAACACCATCAAATCCTCCATCAGGAGGGTACTACAACTCACCACCACAAGACCCTATAACCCCAACAACACCATCAAACCCTTTAACCCCGACAACACCATCAAACCCTCCATCAGGAGGGTACTACAACTCACCACCAACTTATGGAAGTGGTAGCCCCCCGATCGATCCTGGCACCCCATTGACCCCCACTTTCCCCACACCACCTTTCCTTCCTGCACCATCTCCCACTGGTACATGCAACTACTGGAATACTCACCCACAACTCATCTGGGGATTACTAGGCTGGTGGGGAACCTTAGGCAATGCTTTTGGTGTGCATAGTCTGCCAGGACTCGGTGCAAGTCTCAGCATTCCACAAGCACTTTCCAACACAAGAACTGATGCGCTCGGAGCACTTTACAGAGAAGGTGCAGCTTCTTATCTTAACTCCTTGGTGAACAACAAGTTCCCTTACACAACTGATCAAGTCAGAGACAGATTTGTAGCATCACTCAGCTCAAATAAGGCTGCAGCAACACAAGCACATCTTTTCCAGATGGCCAATGAGGGAAAAATTAAGCCTAGAGCATGA
Protein sequence

>Msa0823150

MEKKRSNNASLTMFTMLVALVSQNLVIVPVMANTQAAGSSPSDLSTELCSHSPPPHHSGGGCGSSGTPPSSGSGTPPSSGSSPSHGHGHGHGHSHHGHGHGSSSPPSGSGSYNPTPSNPTPSPPSGSGSYSPTPSTPTPSPPSDGGGSSDPTPSTPPNCDPTPSPGGDGSYSPTPSTPTPSPPSDGGGSYNPTPSTPTPSPPSGSGSYTPTPSTPTPSPPSDGGGSSDPTPSPGGDGSYTPTPSTPPGGGSYDPSPTPPSGDGSYNPTPSPPTGGSYTPTPSTPPASDCPPSDPTSPTTPSDPTPSTPSSPPSGDGGYYNSPPQDPTSPTTPSTPTTPSNPPSGGYDSPPSDPITPTTPSNPPSGGYDSPPSNPITPTTPPNPPSGGYDSPPSDPITPTTPSNPPSGGYYNSPPQDPITPTTPSNPPSGGYDSPPTDPLTPTTPSNPPSGGYYNSPPQDPITPTTPSNPLTPTTPSNPPSGGYYNSPPTYGSGSPPIDPGTPLTPTFPTPPFLPAPSPTGTCNYWNTHPQLIWGLLGWWGTLGNAFGVHSLPGLGASLSIPQALSNTRTDALGALYREGAASYLNSLVNNKFPYTTDQVRDRFVASLSSNKAAATQAHLFQMANEGKIKPRA*