Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829000 | XP_003629967.1 | 97.586 | 290 | 7 | 0 | 1 | 290 | 1 | 290 | 0.0 | 588 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829000 | sp|Q681Y3|Y1099_ARATH | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.70e-131 | 381 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829000 | G7L8V3 | 97.586 | 290 | 7 | 0 | 1 | 290 | 1 | 290 | 0.0 | 588 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0614400 | Msa0829000 | 0.803008 | 4.278129e-49 | -8.615850e-47 |
Msa0647220 | Msa0829000 | 0.810919 | 9.072028e-51 | -8.615850e-47 |
Msa0657670 | Msa0829000 | 0.826085 | 3.291137e-54 | -8.615850e-47 |
Msa0829000 | Msa1438270 | 0.857560 | 1.501534e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829000 | MtrunA17_Chr8g0380691 | 97.586 | 290 | 7 | 0 | 1 | 290 | 1 | 290 | 0.0 | 588 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829000 | AT1G60990.3 | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.81e-132 | 381 |
Msa0829000 | AT1G60990.2 | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.81e-132 | 381 |
Msa0829000 | AT1G60990.1 | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.81e-132 | 381 |
Find 75 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATCTTACTTGGCTACTTT+TGG | 0.165355 | 5_4:-1974253 | None:intergenic |
ACTGCAGGTGCCGAGGTTTC+TGG | 0.175027 | 5_4:+1972785 | Msa0829000:CDS |
TTTCCAACTCCTATAGTTAT+AGG | 0.205103 | 5_4:-1974919 | None:intergenic |
TGTCATTTCGATTAGGTTAT+TGG | 0.218981 | 5_4:-1971548 | None:intergenic |
ACCCATCGACCACGACTTCT+TGG | 0.283454 | 5_4:+1971753 | Msa0829000:CDS |
TACTTACTTGTTCAGCATTT+CGG | 0.314008 | 5_4:-1974023 | None:intergenic |
GCAAACGAGCTTATTTGTTT+TGG | 0.315922 | 5_4:+1974224 | Msa0829000:CDS |
CACTGGATGCCGCAGACAAT+GGG | 0.348039 | 5_4:+1972846 | Msa0829000:CDS |
TTGAACGTAGGTGATCTTAT+TGG | 0.350341 | 5_4:+1974353 | Msa0829000:CDS |
CTGCAGGTGCCGAGGTTTCT+GGG | 0.353745 | 5_4:+1972786 | Msa0829000:CDS |
TGCTCAAGGGGCTGTTGCAA+TGG | 0.369762 | 5_4:+1975014 | Msa0829000:CDS |
CTTGTTCAGCATTTCGGTAA+TGG | 0.379644 | 5_4:-1974017 | None:intergenic |
GCTCAAGGGGCTGTTGCAAT+GGG | 0.395855 | 5_4:+1975015 | Msa0829000:CDS |
TGGTTTCAGCAGAGACTTGT+AGG | 0.401443 | 5_4:+1973993 | Msa0829000:CDS |
CGGCAGCTGCTCCATCTGTC+TGG | 0.407182 | 5_4:+1974980 | Msa0829000:CDS |
CCAGAGTACTGCAAACTTTG+AGG | 0.413393 | 5_4:+1973626 | Msa0829000:CDS |
ACAGTGTTGTCATTTCGATT+AGG | 0.418788 | 5_4:-1971555 | None:intergenic |
AACTTTGAGGGTCTACAGGC+AGG | 0.423954 | 5_4:+1973639 | Msa0829000:CDS |
TCACACTTCGGCCGGATAAG+AGG | 0.440438 | 5_4:+1973367 | Msa0829000:CDS |
GATAAGCAGCCTATAACTAT+AGG | 0.445173 | 5_4:+1974910 | Msa0829000:CDS |
GGTGCCGAGGTTTCTGGGGA+AGG | 0.446680 | 5_4:+1972791 | Msa0829000:CDS |
TGCAAACTTTGAGGGTCTAC+AGG | 0.456706 | 5_4:+1973635 | Msa0829000:CDS |
CTGAGGTTTGGGAGTAAACA+AGG | 0.460947 | 5_4:-1971640 | None:intergenic |
CAGAGTACTGCAAACTTTGA+GGG | 0.462222 | 5_4:+1973627 | Msa0829000:CDS |
GCACTGGATGCCGCAGACAA+TGG | 0.467510 | 5_4:+1972845 | Msa0829000:CDS |
AAGTCGTGGTCGATGGGTGG+AGG | 0.470425 | 5_4:-1971748 | None:intergenic |
TGTGAGCAGAATCTGAGGTT+TGG | 0.470983 | 5_4:-1971652 | None:intergenic |
AAATGAAAGTACCTCTTATC+CGG | 0.476064 | 5_4:-1973378 | None:intergenic |
GGTCGATGGGTGGAGGGGAA+AGG | 0.476226 | 5_4:-1971741 | None:intergenic |
GTGAGCAGAATCTGAGGTTT+GGG | 0.480461 | 5_4:-1971651 | None:intergenic |
TTGCAATGGGTTCTAATGCT+TGG | 0.480918 | 5_4:+1975028 | Msa0829000:CDS |
TCTTGTTCTTCTTGTTGCGT+TGG | 0.487003 | 5_4:-1971675 | None:intergenic |
GGTTTGAGGAATAGTGAAGA+TGG | 0.488115 | 5_4:-1971619 | None:intergenic |
CCTCAAAGTTTGCAGTACTC+TGG | 0.489181 | 5_4:-1973626 | None:intergenic |
CTTCGAAGGTTGAAGTAAGA+TGG | 0.490320 | 5_4:-1971583 | None:intergenic |
CAGCCTATAACTATAGGAGT+TGG | 0.503689 | 5_4:+1974916 | Msa0829000:CDS |
GGAAATATCATTTCTGAAGG+TGG | 0.508021 | 5_4:+1974937 | Msa0829000:CDS |
GTGCCGAGGTTTCTGGGGAA+GGG | 0.511609 | 5_4:+1972792 | Msa0829000:CDS |
TACCAAGAAGTCGTGGTCGA+TGG | 0.513887 | 5_4:-1971755 | None:intergenic |
TATTGCACATGCGTGGATCA+TGG | 0.521802 | 5_4:+1973843 | Msa0829000:CDS |
AGTCGTGGTCGATGGGTGGA+GGG | 0.521890 | 5_4:-1971747 | None:intergenic |
TGGATCTTTCACACTTCGGC+CGG | 0.524782 | 5_4:+1973359 | Msa0829000:CDS |
ACCAAGAAGTCGTGGTCGAT+GGG | 0.525840 | 5_4:-1971754 | None:intergenic |
TTGGGAGTAAACAAGGTTTG+AGG | 0.530532 | 5_4:-1971633 | None:intergenic |
GAGACCATGGTTGGCTTCGA+AGG | 0.530681 | 5_4:-1971597 | None:intergenic |
CAGACAGATGGAGCAGCTGC+CGG | 0.543197 | 5_4:-1974979 | None:intergenic |
AGAATAGCTTTCCAGACAGA+TGG | 0.545861 | 5_4:-1974991 | None:intergenic |
GTCGTGGTCGATGGGTGGAG+GGG | 0.550885 | 5_4:-1971746 | None:intergenic |
ATATCTATAGTTCGAGCTGT+TGG | 0.554752 | 5_4:-1973823 | None:intergenic |
CAGGACACTGTCAAAACTGC+AGG | 0.559001 | 5_4:+1972770 | Msa0829000:intron |
TGGAAAGCTATTCTTGCTCA+AGG | 0.559551 | 5_4:+1975000 | Msa0829000:CDS |
TCATAACGATGAAGAAGCAC+TGG | 0.561241 | 5_4:+1972829 | Msa0829000:CDS |
GTTGGAAATATCATTTCTGA+AGG | 0.563837 | 5_4:+1974934 | Msa0829000:CDS |
GAAAGCTATTCTTGCTCAAG+GGG | 0.565925 | 5_4:+1975002 | Msa0829000:CDS |
GTTGTGGATCTTTCACACTT+CGG | 0.568328 | 5_4:+1973355 | Msa0829000:CDS |
GGAAAGCTATTCTTGCTCAA+GGG | 0.577897 | 5_4:+1975001 | Msa0829000:CDS |
TTGCAGTACTCTGGTTGTGA+AGG | 0.585064 | 5_4:-1973617 | None:intergenic |
TGCAGGTGCCGAGGTTTCTG+GGG | 0.597176 | 5_4:+1972787 | Msa0829000:CDS |
GTGATGGAAAGCTTGAACGT+AGG | 0.598517 | 5_4:+1974341 | Msa0829000:CDS |
GATCCCTTCCCCAGAAACCT+CGG | 0.605258 | 5_4:-1972795 | None:intergenic |
GATCTTATTGGAAAACCATA+CGG | 0.606440 | 5_4:+1974365 | Msa0829000:CDS |
AATAAGTTGCGAGTTATCCA+AGG | 0.609619 | 5_4:+1975051 | Msa0829000:CDS |
AAGAAGTCGTGGTCGATGGG+TGG | 0.610174 | 5_4:-1971751 | None:intergenic |
ACTTTGAGGGTCTACAGGCA+GGG | 0.610437 | 5_4:+1973640 | Msa0829000:CDS |
CTATAGATATTGCACATGCG+TGG | 0.626627 | 5_4:+1973836 | Msa0829000:CDS |
TGTCAAAACTGCAGGTGCCG+AGG | 0.627788 | 5_4:+1972778 | Msa0829000:CDS |
AAATGTTGATGAGTGCCGTA+TGG | 0.628277 | 5_4:-1974380 | None:intergenic |
TACAACAACCCCATTGTCTG+CGG | 0.628493 | 5_4:-1972855 | None:intergenic |
TATTGGCTTATTGCTAACAG+AGG | 0.630705 | 5_4:-1971531 | None:intergenic |
AATAGTGAAGATGGAGACCA+TGG | 0.638511 | 5_4:-1971610 | None:intergenic |
GTGAAGATGGAGACCATGGT+TGG | 0.640860 | 5_4:-1971606 | None:intergenic |
TCAACCTTCGAAGCCAACCA+TGG | 0.648406 | 5_4:+1971593 | Msa0829000:CDS |
GTTGGTGTGAGCAGAATCTG+AGG | 0.669720 | 5_4:-1971657 | None:intergenic |
TGGAAATTACCAAGAAGTCG+TGG | 0.686676 | 5_4:-1971762 | None:intergenic |
ACTGGATGCCGCAGACAATG+GGG | 0.712791 | 5_4:+1972847 | Msa0829000:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATTTCATATTATAATAC+AGG | + | chr5_4:1973742-1973761 | Msa0829000:intron | 10.0% |
!!! | TTTTTTGTTAAAAATAAGAA+AGG | - | chr5_4:1974549-1974568 | None:intergenic | 10.0% |
!!! | ATTCTCAAATATATATATTT+TGG | + | chr5_4:1974875-1974894 | Msa0829000:intron | 10.0% |
!!! | CTTATTTTATATGAATTTTC+AGG | - | chr5_4:1971857-1971876 | None:intergenic | 15.0% |
!! | TCCTTAAATTGATTAATTTA+TGG | + | chr5_4:1973015-1973034 | Msa0829000:intron | 15.0% |
!! | ACCATAAATTAATCAATTTA+AGG | - | chr5_4:1973019-1973038 | None:intergenic | 15.0% |
!!! | TAATTTTAACACGAATATTT+TGG | + | chr5_4:1973553-1973572 | Msa0829000:intron | 15.0% |
!!! | TAAAAATGATTTTTGAAAGA+GGG | - | chr5_4:1973883-1973902 | None:intergenic | 15.0% |
!!! | TTGTTCTTTTATCTTATTTT+CGG | - | chr5_4:1974091-1974110 | None:intergenic | 15.0% |
!! | CATTAACTAAATGATTTATA+TGG | + | chr5_4:1974144-1974163 | Msa0829000:intron | 15.0% |
!! | TTTAATATAATTACATGAAC+AGG | + | chr5_4:1974319-1974338 | Msa0829000:intron | 15.0% |
!!! | ATATTTAAGTTATGTAAAAG+AGG | - | chr5_4:1974727-1974746 | None:intergenic | 15.0% |
!!! | ATATATATTTTGGAATTTGT+AGG | + | chr5_4:1974885-1974904 | Msa0829000:intron | 15.0% |
!! | TAAAATAAGTAGATTGTACT+TGG | + | chr5_4:1971868-1971887 | Msa0829000:intron | 20.0% |
!! | TAATGTTGAATTCATTTGTT+TGG | + | chr5_4:1971918-1971937 | Msa0829000:intron | 20.0% |
!!! | TCAAACTACAAATTTTGAAA+AGG | - | chr5_4:1972061-1972080 | None:intergenic | 20.0% |
!! | ATGAAAGAAAATGATATATC+CGG | - | chr5_4:1972131-1972150 | None:intergenic | 20.0% |
!!! | TATATCATTTTCTTTCATCA+AGG | + | chr5_4:1972133-1972152 | Msa0829000:intron | 20.0% |
!!! | ATGATAGTCATTTTCAATTT+AGG | + | chr5_4:1972404-1972423 | Msa0829000:intron | 20.0% |
!!! | TGATAGTCATTTTCAATTTA+GGG | + | chr5_4:1972405-1972424 | Msa0829000:intron | 20.0% |
!! | AATAGACAATTGTGTAAAAT+TGG | - | chr5_4:1972594-1972613 | None:intergenic | 20.0% |
!! | TATTGTAATAAGAGGAAATA+GGG | - | chr5_4:1972624-1972643 | None:intergenic | 20.0% |
!! | ATATTGTAATAAGAGGAAAT+AGG | - | chr5_4:1972625-1972644 | None:intergenic | 20.0% |
!! | AGAAGTAATATTGTAATAAG+AGG | - | chr5_4:1972632-1972651 | None:intergenic | 20.0% |
!!! | TCATTTGGGTATTTTAAAAA+AGG | - | chr5_4:1972676-1972695 | None:intergenic | 20.0% |
!! | GGTAATAATTAAACAAACAA+AGG | - | chr5_4:1972740-1972759 | None:intergenic | 20.0% |
!!! | TAAATTTAAAAGTTTTGGGA+GGG | - | chr5_4:1973452-1973471 | None:intergenic | 20.0% |
!!! | TTAAATTTAAAAGTTTTGGG+AGG | - | chr5_4:1973453-1973472 | None:intergenic | 20.0% |
!! | ATAATACAGGATTAAGTAAT+AGG | + | chr5_4:1973755-1973774 | Msa0829000:intron | 20.0% |
!!! | GTAAAAATGATTTTTGAAAG+AGG | - | chr5_4:1973884-1973903 | None:intergenic | 20.0% |
!!! | AACTTGTATATTTTACTGTT+AGG | + | chr5_4:1974045-1974064 | Msa0829000:intron | 20.0% |
!!! | TGTTTTTGATAATATTCATC+AGG | - | chr5_4:1974126-1974145 | None:intergenic | 20.0% |
!! | ATTTATATGGAATGATTTCA+AGG | + | chr5_4:1974157-1974176 | Msa0829000:intron | 20.0% |
!! | TTTACAAAAAATAACCAGTA+AGG | - | chr5_4:1974420-1974439 | None:intergenic | 20.0% |
!!! | TTTGTAATTACTAGTTTTCT+TGG | + | chr5_4:1974441-1974460 | Msa0829000:intron | 20.0% |
!!! | TTGTAATTACTAGTTTTCTT+GGG | + | chr5_4:1974442-1974461 | Msa0829000:intron | 20.0% |
!! | GTTAAAAATAAGAAAGGTTA+AGG | - | chr5_4:1974543-1974562 | None:intergenic | 20.0% |
!! | AGAATATTAACAGATAATGT+AGG | - | chr5_4:1974847-1974866 | None:intergenic | 20.0% |
!! | AATTGATAATTGAGAAACGT+TGG | - | chr5_4:1971785-1971804 | None:intergenic | 25.0% |
!!! | GATAGTCATTTTCAATTTAG+GGG | + | chr5_4:1972406-1972425 | Msa0829000:intron | 25.0% |
!!! | ATAGTCATTTTCAATTTAGG+GGG | + | chr5_4:1972407-1972426 | Msa0829000:intron | 25.0% |
!! | CTTTTCTTGAAGAAATGAAA+AGG | - | chr5_4:1972502-1972521 | None:intergenic | 25.0% |
! | TCTTGAGAGCAAAAAAATTA+AGG | + | chr5_4:1972700-1972719 | Msa0829000:intron | 25.0% |
! | ATTACCACTTTCTTAGATAA+TGG | + | chr5_4:1973284-1973303 | Msa0829000:intron | 25.0% |
! | ACAGAAAAATGCAATAATGT+TGG | + | chr5_4:1973970-1973989 | Msa0829000:intron | 25.0% |
!!! | GTACATATTTTTTGCTGATA+AGG | + | chr5_4:1974179-1974198 | Msa0829000:CDS | 25.0% |
!!! | ATATTACTGACTTTTGCTTT+TGG | + | chr5_4:1974662-1974681 | Msa0829000:intron | 25.0% |
!! | AACATTTTCCTATTATCCTA+TGG | + | chr5_4:1974698-1974717 | Msa0829000:intron | 25.0% |
! | AAAGGAAAGATGAAAATACT+TGG | - | chr5_4:1974806-1974825 | None:intergenic | 25.0% |
!! | AGTATTTTCATCTTTCCTTT+TGG | + | chr5_4:1974806-1974825 | Msa0829000:intron | 25.0% |
!! | TCTTTAAGCTTTTTACCAAA+AGG | - | chr5_4:1974824-1974843 | None:intergenic | 25.0% |
! | TGTCATTTCGATTAGGTTAT+TGG | - | chr5_4:1971551-1971570 | None:intergenic | 30.0% |
GATCAACTAGCATAAGAAAA+TGG | - | chr5_4:1971832-1971851 | None:intergenic | 30.0% | |
ATAAGTAGATTGTACTTGGA+TGG | + | chr5_4:1971872-1971891 | Msa0829000:intron | 30.0% | |
TAATCCCTGTCAATGAAAAT+AGG | - | chr5_4:1972168-1972187 | None:intergenic | 30.0% | |
AGGCATCATAATCATATACA+AGG | + | chr5_4:1972351-1972370 | Msa0829000:intron | 30.0% | |
CTATCATGTATAAGAACCAT+AGG | - | chr5_4:1972391-1972410 | None:intergenic | 30.0% | |
ACTCATACTATAAGCACATA+CGG | - | chr5_4:1972466-1972485 | None:intergenic | 30.0% | |
TCAAATTAATCCTTGTACTG+GGG | - | chr5_4:1972536-1972555 | None:intergenic | 30.0% | |
CTCAAATTAATCCTTGTACT+GGG | - | chr5_4:1972537-1972556 | None:intergenic | 30.0% | |
ACTCAAATTAATCCTTGTAC+TGG | - | chr5_4:1972538-1972557 | None:intergenic | 30.0% | |
GCTCTCAAGAAATATCATTT+GGG | - | chr5_4:1972690-1972709 | None:intergenic | 30.0% | |
TGCTCTCAAGAAATATCATT+TGG | - | chr5_4:1972691-1972710 | None:intergenic | 30.0% | |
ATTATTACCTTTACTGTTGC+AGG | + | chr5_4:1972751-1972770 | Msa0829000:intron | 30.0% | |
! | ACTAGCTTACATGACTTTAA+TGG | + | chr5_4:1973112-1973131 | Msa0829000:intron | 30.0% |
CTAGCTTACATGACTTTAAT+GGG | + | chr5_4:1973113-1973132 | Msa0829000:intron | 30.0% | |
TAGAACTTCAACACTGTATT+AGG | - | chr5_4:1973229-1973248 | None:intergenic | 30.0% | |
GCATGTTTAGATACTTATCT+AGG | + | chr5_4:1973258-1973277 | Msa0829000:intron | 30.0% | |
GAATCCATTATCTAAGAAAG+TGG | - | chr5_4:1973291-1973310 | None:intergenic | 30.0% | |
TCTGTGCAATCTAATAACAT+AGG | + | chr5_4:1973333-1973352 | Msa0829000:intron | 30.0% | |
CAATCTAATAACATAGGTTG+TGG | + | chr5_4:1973339-1973358 | Msa0829000:intron | 30.0% | |
!! | AAATGAAAGTACCTCTTATC+CGG | - | chr5_4:1973381-1973400 | None:intergenic | 30.0% |
ATAACTTGAAATACAGTCAG+TGG | + | chr5_4:1973576-1973595 | Msa0829000:intron | 30.0% | |
GAAAAATGCAATAATGTTGG+TGG | + | chr5_4:1973973-1973992 | Msa0829000:intron | 30.0% | |
TACTTACTTGTTCAGCATTT+CGG | - | chr5_4:1974026-1974045 | None:intergenic | 30.0% | |
!!! | TATCTTACTTGGCTACTTTT+GGG | - | chr5_4:1974255-1974274 | None:intergenic | 30.0% |
! | CTGTGATAATGTATCTTACT+TGG | - | chr5_4:1974266-1974285 | None:intergenic | 30.0% |
ATAATTACATGAACAGGTGA+TGG | + | chr5_4:1974325-1974344 | Msa0829000:intron | 30.0% | |
GATCTTATTGGAAAACCATA+CGG | + | chr5_4:1974365-1974384 | Msa0829000:CDS | 30.0% | |
ACTTAAATATACACAGCTTC+TGG | + | chr5_4:1974756-1974775 | Msa0829000:intron | 30.0% | |
TTTCCAACTCCTATAGTTAT+AGG | - | chr5_4:1974922-1974941 | None:intergenic | 30.0% | |
GTTGGAAATATCATTTCTGA+AGG | + | chr5_4:1974934-1974953 | Msa0829000:CDS | 30.0% | |
!!! | TTTTTCATTGATGATGTCTC+CGG | + | chr5_4:1974960-1974979 | Msa0829000:CDS | 30.0% |
!! | TATTGGCTTATTGCTAACAG+AGG | - | chr5_4:1971534-1971553 | None:intergenic | 35.0% |
! | ACAGTGTTGTCATTTCGATT+AGG | - | chr5_4:1971558-1971577 | None:intergenic | 35.0% |
AACACTTGAGGTCAATTACT+TGG | - | chr5_4:1972101-1972120 | None:intergenic | 35.0% | |
ACCTCAAGTGTTAATGAATC+CGG | + | chr5_4:1972109-1972128 | Msa0829000:intron | 35.0% | |
!! | AAGTTCTGAATCCTATCTCA+CGG | - | chr5_4:1972277-1972296 | None:intergenic | 35.0% |
TGTATAAGAACCATAGGTGT+AGG | - | chr5_4:1972385-1972404 | None:intergenic | 35.0% | |
GAAAAAATTACCCCAGTACA+AGG | + | chr5_4:1972523-1972542 | Msa0829000:intron | 35.0% | |
TTTGCACGAACATCTTCATT+TGG | + | chr5_4:1972934-1972953 | Msa0829000:intron | 35.0% | |
!! | TTACATGACTTTAATGGGCT+TGG | + | chr5_4:1973118-1973137 | Msa0829000:intron | 35.0% |
!! | TACATGACTTTAATGGGCTT+GGG | + | chr5_4:1973119-1973138 | Msa0829000:intron | 35.0% |
ATAAGAGCAATGCATTCACA+AGG | + | chr5_4:1973422-1973441 | Msa0829000:intron | 35.0% | |
TCCATACAGTGTAAGCAATT+GGG | + | chr5_4:1973497-1973516 | Msa0829000:intron | 35.0% | |
ATCTCTAACTGAAATCCCTA+GGG | + | chr5_4:1973778-1973797 | Msa0829000:intron | 35.0% | |
ATATCTATAGTTCGAGCTGT+TGG | - | chr5_4:1973826-1973845 | None:intergenic | 35.0% | |
! | GCAAACGAGCTTATTTGTTT+TGG | + | chr5_4:1974224-1974243 | Msa0829000:CDS | 35.0% |
!! | GTATCTTACTTGGCTACTTT+TGG | - | chr5_4:1974256-1974275 | None:intergenic | 35.0% |
TTGAACGTAGGTGATCTTAT+TGG | + | chr5_4:1974353-1974372 | Msa0829000:CDS | 35.0% | |
TTATGTAAGCTTCACCTTAC+TGG | + | chr5_4:1974403-1974422 | Msa0829000:intron | 35.0% | |
TCTCTCGTACAAGATATATC+TGG | + | chr5_4:1974476-1974495 | Msa0829000:intron | 35.0% | |
GATACTTCCCTAAGTAAGAA+AGG | + | chr5_4:1974629-1974648 | Msa0829000:intron | 35.0% | |
ATCCATGCCTTTCTTACTTA+GGG | - | chr5_4:1974639-1974658 | None:intergenic | 35.0% | |
TATCCATGCCTTTCTTACTT+AGG | - | chr5_4:1974640-1974659 | None:intergenic | 35.0% | |
TATGTAAAAGAGGTAGCCAT+AGG | - | chr5_4:1974717-1974736 | None:intergenic | 35.0% | |
GATAAGCAGCCTATAACTAT+AGG | + | chr5_4:1974910-1974929 | Msa0829000:CDS | 35.0% | |
! | GGAAATATCATTTCTGAAGG+TGG | + | chr5_4:1974937-1974956 | Msa0829000:CDS | 35.0% |
CTTCGAAGGTTGAAGTAAGA+TGG | - | chr5_4:1971586-1971605 | None:intergenic | 40.0% | |
AATAGTGAAGATGGAGACCA+TGG | - | chr5_4:1971613-1971632 | None:intergenic | 40.0% | |
GGTTTGAGGAATAGTGAAGA+TGG | - | chr5_4:1971622-1971641 | None:intergenic | 40.0% | |
TTGGGAGTAAACAAGGTTTG+AGG | - | chr5_4:1971636-1971655 | None:intergenic | 40.0% | |
TCTTGTTCTTCTTGTTGCGT+TGG | - | chr5_4:1971678-1971697 | None:intergenic | 40.0% | |
TGGAAATTACCAAGAAGTCG+TGG | - | chr5_4:1971765-1971784 | None:intergenic | 40.0% | |
TCCGGATTCATTAACACTTG+AGG | - | chr5_4:1972113-1972132 | None:intergenic | 40.0% | |
CCCTGTCAATGAAAATAGGA+GGG | - | chr5_4:1972164-1972183 | None:intergenic | 40.0% | |
! | CCCTCCTATTTTCATTGACA+GGG | + | chr5_4:1972161-1972180 | Msa0829000:intron | 40.0% |
TCCCTGTCAATGAAAATAGG+AGG | - | chr5_4:1972165-1972184 | None:intergenic | 40.0% | |
TACTAAAATGGCCGTGAGAT+AGG | + | chr5_4:1972263-1972282 | Msa0829000:intron | 40.0% | |
! | TCATAACGATGAAGAAGCAC+TGG | + | chr5_4:1972829-1972848 | Msa0829000:CDS | 40.0% |
GAGAACATGCATTTAGCTAC+AGG | - | chr5_4:1972908-1972927 | None:intergenic | 40.0% | |
GTTGTGGATCTTTCACACTT+CGG | + | chr5_4:1973355-1973374 | Msa0829000:CDS | 40.0% | |
TGCATTGCTCTTATGTGGAA+AGG | - | chr5_4:1973416-1973435 | None:intergenic | 40.0% | |
GTGAATGCATTGCTCTTATG+TGG | - | chr5_4:1973421-1973440 | None:intergenic | 40.0% | |
GTCCATACAGTGTAAGCAAT+TGG | + | chr5_4:1973496-1973515 | Msa0829000:intron | 40.0% | |
TCCCAATTGCTTACACTGTA+TGG | - | chr5_4:1973501-1973520 | None:intergenic | 40.0% | |
!! | CAGAGTACTGCAAACTTTGA+GGG | + | chr5_4:1973627-1973646 | Msa0829000:CDS | 40.0% |
GATCTCTAACTGAAATCCCT+AGG | + | chr5_4:1973777-1973796 | Msa0829000:intron | 40.0% | |
AAAACAGTGTCACATCCCTA+GGG | - | chr5_4:1973796-1973815 | None:intergenic | 40.0% | |
AAAAACAGTGTCACATCCCT+AGG | - | chr5_4:1973797-1973816 | None:intergenic | 40.0% | |
CTATAGATATTGCACATGCG+TGG | + | chr5_4:1973836-1973855 | Msa0829000:CDS | 40.0% | |
CTTGTTCAGCATTTCGGTAA+TGG | - | chr5_4:1974020-1974039 | None:intergenic | 40.0% | |
TTACTGTTAGGATTCTCCGA+CGG | + | chr5_4:1974057-1974076 | Msa0829000:intron | 40.0% | |
! | ATTTTCGGTTTAACCTCCGT+CGG | - | chr5_4:1974076-1974095 | None:intergenic | 40.0% |
!!! | ACGAGCTTATTTGTTTTGGC+AGG | + | chr5_4:1974228-1974247 | Msa0829000:CDS | 40.0% |
AGTTGTGAGAATGACAGAGT+CGG | + | chr5_4:1974291-1974310 | Msa0829000:intron | 40.0% | |
! | AAATGTTGATGAGTGCCGTA+TGG | - | chr5_4:1974383-1974402 | None:intergenic | 40.0% |
ATGACACGATTGAGCATGTA+AGG | - | chr5_4:1974574-1974593 | None:intergenic | 40.0% | |
TTCCCTAAGTAAGAAAGGCA+TGG | + | chr5_4:1974634-1974653 | Msa0829000:intron | 40.0% | |
!! | TTTGCTTTTGGCAACGCTTT+TGG | + | chr5_4:1974674-1974693 | Msa0829000:intron | 40.0% |
AGAGGTAGCCATAGGATAAT+AGG | - | chr5_4:1974709-1974728 | None:intergenic | 40.0% | |
CAGCCTATAACTATAGGAGT+TGG | + | chr5_4:1974916-1974935 | Msa0829000:CDS | 40.0% | |
AGAATAGCTTTCCAGACAGA+TGG | - | chr5_4:1974994-1975013 | None:intergenic | 40.0% | |
TGGAAAGCTATTCTTGCTCA+AGG | + | chr5_4:1975000-1975019 | Msa0829000:CDS | 40.0% | |
GGAAAGCTATTCTTGCTCAA+GGG | + | chr5_4:1975001-1975020 | Msa0829000:CDS | 40.0% | |
GAAAGCTATTCTTGCTCAAG+GGG | + | chr5_4:1975002-1975021 | Msa0829000:CDS | 40.0% | |
! | TTGCAATGGGTTCTAATGCT+TGG | + | chr5_4:1975028-1975047 | Msa0829000:CDS | 40.0% |
CTGAGGTTTGGGAGTAAACA+AGG | - | chr5_4:1971643-1971662 | None:intergenic | 45.0% | |
! | GTGAGCAGAATCTGAGGTTT+GGG | - | chr5_4:1971654-1971673 | None:intergenic | 45.0% |
! | TGTGAGCAGAATCTGAGGTT+TGG | - | chr5_4:1971655-1971674 | None:intergenic | 45.0% |
! | GCCCTCCTATTTTCATTGAC+AGG | + | chr5_4:1972160-1972179 | Msa0829000:intron | 45.0% |
!! | CCATTTTAGTAGCTGAGGTG+GGG | - | chr5_4:1972254-1972273 | None:intergenic | 45.0% |
!! | GCCATTTTAGTAGCTGAGGT+GGG | - | chr5_4:1972255-1972274 | None:intergenic | 45.0% |
ATTATGATGCCTACGAGTCG+AGG | - | chr5_4:1972343-1972362 | None:intergenic | 45.0% | |
ACAGTGTCCTGCAACAGTAA+AGG | - | chr5_4:1972761-1972780 | None:intergenic | 45.0% | |
TACAACAACCCCATTGTCTG+CGG | - | chr5_4:1972858-1972877 | None:intergenic | 45.0% | |
GCTTGGGATGATATTAGCTC+AGG | + | chr5_4:1973135-1973154 | Msa0829000:intron | 45.0% | |
TTGCAGTACTCTGGTTGTGA+AGG | - | chr5_4:1973620-1973639 | None:intergenic | 45.0% | |
CCTCAAAGTTTGCAGTACTC+TGG | - | chr5_4:1973629-1973648 | None:intergenic | 45.0% | |
!! | CCAGAGTACTGCAAACTTTG+AGG | + | chr5_4:1973626-1973645 | Msa0829000:CDS | 45.0% |
! | TGCAAACTTTGAGGGTCTAC+AGG | + | chr5_4:1973635-1973654 | Msa0829000:CDS | 45.0% |
TATTGCACATGCGTGGATCA+TGG | + | chr5_4:1973843-1973862 | Msa0829000:CDS | 45.0% | |
TGGTTTCAGCAGAGACTTGT+AGG | + | chr5_4:1973993-1974012 | Msa0829000:CDS | 45.0% | |
! | GTGATGGAAAGCTTGAACGT+AGG | + | chr5_4:1974341-1974360 | Msa0829000:CDS | 45.0% |
!!! | TATTTAAATTTAAAAGTTTT+GGG | - | chr5_4:1973456-1973475 | None:intergenic | 5.0% |
!!! | ATATTTAAATTTAAAAGTTT+TGG | - | chr5_4:1973457-1973476 | None:intergenic | 5.0% |
TCAACCTTCGAAGCCAACCA+TGG | + | chr5_4:1971593-1971612 | Msa0829000:CDS | 50.0% | |
GTGAAGATGGAGACCATGGT+TGG | - | chr5_4:1971609-1971628 | None:intergenic | 50.0% | |
GTTGGTGTGAGCAGAATCTG+AGG | - | chr5_4:1971660-1971679 | None:intergenic | 50.0% | |
ACCAAGAAGTCGTGGTCGAT+GGG | - | chr5_4:1971757-1971776 | None:intergenic | 50.0% | |
TACCAAGAAGTCGTGGTCGA+TGG | - | chr5_4:1971758-1971777 | None:intergenic | 50.0% | |
! | TTTTAGTAGCTGAGGTGGGG+AGG | - | chr5_4:1972251-1972270 | None:intergenic | 50.0% |
CCCCACCTCAGCTACTAAAA+TGG | + | chr5_4:1972251-1972270 | Msa0829000:intron | 50.0% | |
!! | GGCCATTTTAGTAGCTGAGG+TGG | - | chr5_4:1972256-1972275 | None:intergenic | 50.0% |
!! | CACGGCCATTTTAGTAGCTG+AGG | - | chr5_4:1972259-1972278 | None:intergenic | 50.0% |
! | TCATAAGCTCCTCGACTCGT+AGG | + | chr5_4:1972331-1972350 | Msa0829000:intron | 50.0% |
GGATCGAGAACCTACACCTA+TGG | + | chr5_4:1972372-1972391 | Msa0829000:intron | 50.0% | |
CAGGACACTGTCAAAACTGC+AGG | + | chr5_4:1972770-1972789 | Msa0829000:intron | 50.0% | |
TGGATCTTTCACACTTCGGC+CGG | + | chr5_4:1973359-1973378 | Msa0829000:CDS | 50.0% | |
! | AACTTTGAGGGTCTACAGGC+AGG | + | chr5_4:1973639-1973658 | Msa0829000:CDS | 50.0% |
! | ACTTTGAGGGTCTACAGGCA+GGG | + | chr5_4:1973640-1973659 | Msa0829000:CDS | 50.0% |
!! | GAGACCATGGTTGGCTTCGA+AGG | - | chr5_4:1971600-1971619 | None:intergenic | 55.0% |
AAGAAGTCGTGGTCGATGGG+TGG | - | chr5_4:1971754-1971773 | None:intergenic | 55.0% | |
ACCCATCGACCACGACTTCT+TGG | + | chr5_4:1971753-1971772 | Msa0829000:CDS | 55.0% | |
! | TGTCAAAACTGCAGGTGCCG+AGG | + | chr5_4:1972778-1972797 | Msa0829000:CDS | 55.0% |
GATCCCTTCCCCAGAAACCT+CGG | - | chr5_4:1972798-1972817 | None:intergenic | 55.0% | |
CACTGGATGCCGCAGACAAT+GGG | + | chr5_4:1972846-1972865 | Msa0829000:CDS | 55.0% | |
ACTGGATGCCGCAGACAATG+GGG | + | chr5_4:1972847-1972866 | Msa0829000:CDS | 55.0% | |
TCACACTTCGGCCGGATAAG+AGG | + | chr5_4:1973367-1973386 | Msa0829000:CDS | 55.0% | |
CTACAGGCAGGGCAAGTATG+TGG | + | chr5_4:1973651-1973670 | Msa0829000:intron | 55.0% | |
CTGTTAGGATTCTCCGACGG+AGG | + | chr5_4:1974060-1974079 | Msa0829000:intron | 55.0% | |
TGCTCAAGGGGCTGTTGCAA+TGG | + | chr5_4:1975014-1975033 | Msa0829000:CDS | 55.0% | |
GCTCAAGGGGCTGTTGCAAT+GGG | + | chr5_4:1975015-1975034 | Msa0829000:CDS | 55.0% | |
AGTCGTGGTCGATGGGTGGA+GGG | - | chr5_4:1971750-1971769 | None:intergenic | 60.0% | |
AAGTCGTGGTCGATGGGTGG+AGG | - | chr5_4:1971751-1971770 | None:intergenic | 60.0% | |
!! | ACTGCAGGTGCCGAGGTTTC+TGG | + | chr5_4:1972785-1972804 | Msa0829000:CDS | 60.0% |
!! | CTGCAGGTGCCGAGGTTTCT+GGG | + | chr5_4:1972786-1972805 | Msa0829000:CDS | 60.0% |
!! | TGCAGGTGCCGAGGTTTCTG+GGG | + | chr5_4:1972787-1972806 | Msa0829000:CDS | 60.0% |
! | GTGCCGAGGTTTCTGGGGAA+GGG | + | chr5_4:1972792-1972811 | Msa0829000:CDS | 60.0% |
GCACTGGATGCCGCAGACAA+TGG | + | chr5_4:1972845-1972864 | Msa0829000:CDS | 60.0% | |
CAGACAGATGGAGCAGCTGC+CGG | - | chr5_4:1974982-1975001 | None:intergenic | 60.0% | |
GGTCGATGGGTGGAGGGGAA+AGG | - | chr5_4:1971744-1971763 | None:intergenic | 65.0% | |
GTCGTGGTCGATGGGTGGAG+GGG | - | chr5_4:1971749-1971768 | None:intergenic | 65.0% | |
! | GGTGCCGAGGTTTCTGGGGA+AGG | + | chr5_4:1972791-1972810 | Msa0829000:CDS | 65.0% |
CGGCAGCTGCTCCATCTGTC+TGG | + | chr5_4:1974980-1974999 | Msa0829000:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 1971525 | 1975071 | 1971525 | ID=Msa0829000;Name=Msa0829000 |
chr5_4 | mRNA | 1971525 | 1975071 | 1971525 | ID=Msa0829000-mRNA-1;Parent=Msa0829000;Name=Msa0829000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=40|1|0.88|1|1|1|9|0|290 |
chr5_4 | exon | 1971525 | 1971774 | 1971525 | ID=Msa0829000-mRNA-1:exon:559;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1972773 | 1972874 | 1972773 | ID=Msa0829000-mRNA-1:exon:560;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1973355 | 1973388 | 1973355 | ID=Msa0829000-mRNA-1:exon:561;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1973592 | 1973665 | 1973592 | ID=Msa0829000-mRNA-1:exon:562;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1973799 | 1973864 | 1973799 | ID=Msa0829000-mRNA-1:exon:563;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1973974 | 1974038 | 1973974 | ID=Msa0829000-mRNA-1:exon:564;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1974179 | 1974266 | 1974179 | ID=Msa0829000-mRNA-1:exon:565;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1974341 | 1974406 | 1974341 | ID=Msa0829000-mRNA-1:exon:566;Parent=Msa0829000-mRNA-1 |
chr5_4 | exon | 1974907 | 1975071 | 1974907 | ID=Msa0829000-mRNA-1:exon:567;Parent=Msa0829000-mRNA-1 |
chr5_4 | five_prime_UTR | 1971525 | 1971564 | 1971525 | ID=Msa0829000-mRNA-1:five_prime_utr;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1971565 | 1971774 | 1971565 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1972773 | 1972874 | 1972773 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1973355 | 1973388 | 1973355 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1973592 | 1973665 | 1973592 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1973799 | 1973864 | 1973799 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1973974 | 1974038 | 1973974 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1974179 | 1974266 | 1974179 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1974341 | 1974406 | 1974341 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
chr5_4 | CDS | 1974907 | 1975071 | 1974907 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
Gene Sequence |
Protein sequence |