AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0829000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829000 MtrunA17_Chr8g0380691 97.586 290 7 0 1 290 1 290 0.0 588
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829000 AT1G60990.3 65.942 276 83 2 24 290 27 300 6.81e-132 381
Msa0829000 AT1G60990.2 65.942 276 83 2 24 290 27 300 6.81e-132 381
Msa0829000 AT1G60990.1 65.942 276 83 2 24 290 27 300 6.81e-132 381

Find 75 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCTTACTTGGCTACTTT+TGG 0.165355 5_4:-1974253 None:intergenic
ACTGCAGGTGCCGAGGTTTC+TGG 0.175027 5_4:+1972785 Msa0829000:CDS
TTTCCAACTCCTATAGTTAT+AGG 0.205103 5_4:-1974919 None:intergenic
TGTCATTTCGATTAGGTTAT+TGG 0.218981 5_4:-1971548 None:intergenic
ACCCATCGACCACGACTTCT+TGG 0.283454 5_4:+1971753 Msa0829000:CDS
TACTTACTTGTTCAGCATTT+CGG 0.314008 5_4:-1974023 None:intergenic
GCAAACGAGCTTATTTGTTT+TGG 0.315922 5_4:+1974224 Msa0829000:CDS
CACTGGATGCCGCAGACAAT+GGG 0.348039 5_4:+1972846 Msa0829000:CDS
TTGAACGTAGGTGATCTTAT+TGG 0.350341 5_4:+1974353 Msa0829000:CDS
CTGCAGGTGCCGAGGTTTCT+GGG 0.353745 5_4:+1972786 Msa0829000:CDS
TGCTCAAGGGGCTGTTGCAA+TGG 0.369762 5_4:+1975014 Msa0829000:CDS
CTTGTTCAGCATTTCGGTAA+TGG 0.379644 5_4:-1974017 None:intergenic
GCTCAAGGGGCTGTTGCAAT+GGG 0.395855 5_4:+1975015 Msa0829000:CDS
TGGTTTCAGCAGAGACTTGT+AGG 0.401443 5_4:+1973993 Msa0829000:CDS
CGGCAGCTGCTCCATCTGTC+TGG 0.407182 5_4:+1974980 Msa0829000:CDS
CCAGAGTACTGCAAACTTTG+AGG 0.413393 5_4:+1973626 Msa0829000:CDS
ACAGTGTTGTCATTTCGATT+AGG 0.418788 5_4:-1971555 None:intergenic
AACTTTGAGGGTCTACAGGC+AGG 0.423954 5_4:+1973639 Msa0829000:CDS
TCACACTTCGGCCGGATAAG+AGG 0.440438 5_4:+1973367 Msa0829000:CDS
GATAAGCAGCCTATAACTAT+AGG 0.445173 5_4:+1974910 Msa0829000:CDS
GGTGCCGAGGTTTCTGGGGA+AGG 0.446680 5_4:+1972791 Msa0829000:CDS
TGCAAACTTTGAGGGTCTAC+AGG 0.456706 5_4:+1973635 Msa0829000:CDS
CTGAGGTTTGGGAGTAAACA+AGG 0.460947 5_4:-1971640 None:intergenic
CAGAGTACTGCAAACTTTGA+GGG 0.462222 5_4:+1973627 Msa0829000:CDS
GCACTGGATGCCGCAGACAA+TGG 0.467510 5_4:+1972845 Msa0829000:CDS
AAGTCGTGGTCGATGGGTGG+AGG 0.470425 5_4:-1971748 None:intergenic
TGTGAGCAGAATCTGAGGTT+TGG 0.470983 5_4:-1971652 None:intergenic
AAATGAAAGTACCTCTTATC+CGG 0.476064 5_4:-1973378 None:intergenic
GGTCGATGGGTGGAGGGGAA+AGG 0.476226 5_4:-1971741 None:intergenic
GTGAGCAGAATCTGAGGTTT+GGG 0.480461 5_4:-1971651 None:intergenic
TTGCAATGGGTTCTAATGCT+TGG 0.480918 5_4:+1975028 Msa0829000:CDS
TCTTGTTCTTCTTGTTGCGT+TGG 0.487003 5_4:-1971675 None:intergenic
GGTTTGAGGAATAGTGAAGA+TGG 0.488115 5_4:-1971619 None:intergenic
CCTCAAAGTTTGCAGTACTC+TGG 0.489181 5_4:-1973626 None:intergenic
CTTCGAAGGTTGAAGTAAGA+TGG 0.490320 5_4:-1971583 None:intergenic
CAGCCTATAACTATAGGAGT+TGG 0.503689 5_4:+1974916 Msa0829000:CDS
GGAAATATCATTTCTGAAGG+TGG 0.508021 5_4:+1974937 Msa0829000:CDS
GTGCCGAGGTTTCTGGGGAA+GGG 0.511609 5_4:+1972792 Msa0829000:CDS
TACCAAGAAGTCGTGGTCGA+TGG 0.513887 5_4:-1971755 None:intergenic
TATTGCACATGCGTGGATCA+TGG 0.521802 5_4:+1973843 Msa0829000:CDS
AGTCGTGGTCGATGGGTGGA+GGG 0.521890 5_4:-1971747 None:intergenic
TGGATCTTTCACACTTCGGC+CGG 0.524782 5_4:+1973359 Msa0829000:CDS
ACCAAGAAGTCGTGGTCGAT+GGG 0.525840 5_4:-1971754 None:intergenic
TTGGGAGTAAACAAGGTTTG+AGG 0.530532 5_4:-1971633 None:intergenic
GAGACCATGGTTGGCTTCGA+AGG 0.530681 5_4:-1971597 None:intergenic
CAGACAGATGGAGCAGCTGC+CGG 0.543197 5_4:-1974979 None:intergenic
AGAATAGCTTTCCAGACAGA+TGG 0.545861 5_4:-1974991 None:intergenic
GTCGTGGTCGATGGGTGGAG+GGG 0.550885 5_4:-1971746 None:intergenic
ATATCTATAGTTCGAGCTGT+TGG 0.554752 5_4:-1973823 None:intergenic
CAGGACACTGTCAAAACTGC+AGG 0.559001 5_4:+1972770 Msa0829000:intron
TGGAAAGCTATTCTTGCTCA+AGG 0.559551 5_4:+1975000 Msa0829000:CDS
TCATAACGATGAAGAAGCAC+TGG 0.561241 5_4:+1972829 Msa0829000:CDS
GTTGGAAATATCATTTCTGA+AGG 0.563837 5_4:+1974934 Msa0829000:CDS
GAAAGCTATTCTTGCTCAAG+GGG 0.565925 5_4:+1975002 Msa0829000:CDS
GTTGTGGATCTTTCACACTT+CGG 0.568328 5_4:+1973355 Msa0829000:CDS
GGAAAGCTATTCTTGCTCAA+GGG 0.577897 5_4:+1975001 Msa0829000:CDS
TTGCAGTACTCTGGTTGTGA+AGG 0.585064 5_4:-1973617 None:intergenic
TGCAGGTGCCGAGGTTTCTG+GGG 0.597176 5_4:+1972787 Msa0829000:CDS
GTGATGGAAAGCTTGAACGT+AGG 0.598517 5_4:+1974341 Msa0829000:CDS
GATCCCTTCCCCAGAAACCT+CGG 0.605258 5_4:-1972795 None:intergenic
GATCTTATTGGAAAACCATA+CGG 0.606440 5_4:+1974365 Msa0829000:CDS
AATAAGTTGCGAGTTATCCA+AGG 0.609619 5_4:+1975051 Msa0829000:CDS
AAGAAGTCGTGGTCGATGGG+TGG 0.610174 5_4:-1971751 None:intergenic
ACTTTGAGGGTCTACAGGCA+GGG 0.610437 5_4:+1973640 Msa0829000:CDS
CTATAGATATTGCACATGCG+TGG 0.626627 5_4:+1973836 Msa0829000:CDS
TGTCAAAACTGCAGGTGCCG+AGG 0.627788 5_4:+1972778 Msa0829000:CDS
AAATGTTGATGAGTGCCGTA+TGG 0.628277 5_4:-1974380 None:intergenic
TACAACAACCCCATTGTCTG+CGG 0.628493 5_4:-1972855 None:intergenic
TATTGGCTTATTGCTAACAG+AGG 0.630705 5_4:-1971531 None:intergenic
AATAGTGAAGATGGAGACCA+TGG 0.638511 5_4:-1971610 None:intergenic
GTGAAGATGGAGACCATGGT+TGG 0.640860 5_4:-1971606 None:intergenic
TCAACCTTCGAAGCCAACCA+TGG 0.648406 5_4:+1971593 Msa0829000:CDS
GTTGGTGTGAGCAGAATCTG+AGG 0.669720 5_4:-1971657 None:intergenic
TGGAAATTACCAAGAAGTCG+TGG 0.686676 5_4:-1971762 None:intergenic
ACTGGATGCCGCAGACAATG+GGG 0.712791 5_4:+1972847 Msa0829000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTCATATTATAATAC+AGG + chr5_4:1973742-1973761 Msa0829000:intron 10.0%
!!! TTTTTTGTTAAAAATAAGAA+AGG - chr5_4:1974549-1974568 None:intergenic 10.0%
!!! ATTCTCAAATATATATATTT+TGG + chr5_4:1974875-1974894 Msa0829000:intron 10.0%
!!! CTTATTTTATATGAATTTTC+AGG - chr5_4:1971857-1971876 None:intergenic 15.0%
!! TCCTTAAATTGATTAATTTA+TGG + chr5_4:1973015-1973034 Msa0829000:intron 15.0%
!! ACCATAAATTAATCAATTTA+AGG - chr5_4:1973019-1973038 None:intergenic 15.0%
!!! TAATTTTAACACGAATATTT+TGG + chr5_4:1973553-1973572 Msa0829000:intron 15.0%
!!! TAAAAATGATTTTTGAAAGA+GGG - chr5_4:1973883-1973902 None:intergenic 15.0%
!!! TTGTTCTTTTATCTTATTTT+CGG - chr5_4:1974091-1974110 None:intergenic 15.0%
!! CATTAACTAAATGATTTATA+TGG + chr5_4:1974144-1974163 Msa0829000:intron 15.0%
!! TTTAATATAATTACATGAAC+AGG + chr5_4:1974319-1974338 Msa0829000:intron 15.0%
!!! ATATTTAAGTTATGTAAAAG+AGG - chr5_4:1974727-1974746 None:intergenic 15.0%
!!! ATATATATTTTGGAATTTGT+AGG + chr5_4:1974885-1974904 Msa0829000:intron 15.0%
!! TAAAATAAGTAGATTGTACT+TGG + chr5_4:1971868-1971887 Msa0829000:intron 20.0%
!! TAATGTTGAATTCATTTGTT+TGG + chr5_4:1971918-1971937 Msa0829000:intron 20.0%
!!! TCAAACTACAAATTTTGAAA+AGG - chr5_4:1972061-1972080 None:intergenic 20.0%
!! ATGAAAGAAAATGATATATC+CGG - chr5_4:1972131-1972150 None:intergenic 20.0%
!!! TATATCATTTTCTTTCATCA+AGG + chr5_4:1972133-1972152 Msa0829000:intron 20.0%
!!! ATGATAGTCATTTTCAATTT+AGG + chr5_4:1972404-1972423 Msa0829000:intron 20.0%
!!! TGATAGTCATTTTCAATTTA+GGG + chr5_4:1972405-1972424 Msa0829000:intron 20.0%
!! AATAGACAATTGTGTAAAAT+TGG - chr5_4:1972594-1972613 None:intergenic 20.0%
!! TATTGTAATAAGAGGAAATA+GGG - chr5_4:1972624-1972643 None:intergenic 20.0%
!! ATATTGTAATAAGAGGAAAT+AGG - chr5_4:1972625-1972644 None:intergenic 20.0%
!! AGAAGTAATATTGTAATAAG+AGG - chr5_4:1972632-1972651 None:intergenic 20.0%
!!! TCATTTGGGTATTTTAAAAA+AGG - chr5_4:1972676-1972695 None:intergenic 20.0%
!! GGTAATAATTAAACAAACAA+AGG - chr5_4:1972740-1972759 None:intergenic 20.0%
!!! TAAATTTAAAAGTTTTGGGA+GGG - chr5_4:1973452-1973471 None:intergenic 20.0%
!!! TTAAATTTAAAAGTTTTGGG+AGG - chr5_4:1973453-1973472 None:intergenic 20.0%
!! ATAATACAGGATTAAGTAAT+AGG + chr5_4:1973755-1973774 Msa0829000:intron 20.0%
!!! GTAAAAATGATTTTTGAAAG+AGG - chr5_4:1973884-1973903 None:intergenic 20.0%
!!! AACTTGTATATTTTACTGTT+AGG + chr5_4:1974045-1974064 Msa0829000:intron 20.0%
!!! TGTTTTTGATAATATTCATC+AGG - chr5_4:1974126-1974145 None:intergenic 20.0%
!! ATTTATATGGAATGATTTCA+AGG + chr5_4:1974157-1974176 Msa0829000:intron 20.0%
!! TTTACAAAAAATAACCAGTA+AGG - chr5_4:1974420-1974439 None:intergenic 20.0%
!!! TTTGTAATTACTAGTTTTCT+TGG + chr5_4:1974441-1974460 Msa0829000:intron 20.0%
!!! TTGTAATTACTAGTTTTCTT+GGG + chr5_4:1974442-1974461 Msa0829000:intron 20.0%
!! GTTAAAAATAAGAAAGGTTA+AGG - chr5_4:1974543-1974562 None:intergenic 20.0%
!! AGAATATTAACAGATAATGT+AGG - chr5_4:1974847-1974866 None:intergenic 20.0%
!! AATTGATAATTGAGAAACGT+TGG - chr5_4:1971785-1971804 None:intergenic 25.0%
!!! GATAGTCATTTTCAATTTAG+GGG + chr5_4:1972406-1972425 Msa0829000:intron 25.0%
!!! ATAGTCATTTTCAATTTAGG+GGG + chr5_4:1972407-1972426 Msa0829000:intron 25.0%
!! CTTTTCTTGAAGAAATGAAA+AGG - chr5_4:1972502-1972521 None:intergenic 25.0%
! TCTTGAGAGCAAAAAAATTA+AGG + chr5_4:1972700-1972719 Msa0829000:intron 25.0%
! ATTACCACTTTCTTAGATAA+TGG + chr5_4:1973284-1973303 Msa0829000:intron 25.0%
! ACAGAAAAATGCAATAATGT+TGG + chr5_4:1973970-1973989 Msa0829000:intron 25.0%
!!! GTACATATTTTTTGCTGATA+AGG + chr5_4:1974179-1974198 Msa0829000:CDS 25.0%
!!! ATATTACTGACTTTTGCTTT+TGG + chr5_4:1974662-1974681 Msa0829000:intron 25.0%
!! AACATTTTCCTATTATCCTA+TGG + chr5_4:1974698-1974717 Msa0829000:intron 25.0%
! AAAGGAAAGATGAAAATACT+TGG - chr5_4:1974806-1974825 None:intergenic 25.0%
!! AGTATTTTCATCTTTCCTTT+TGG + chr5_4:1974806-1974825 Msa0829000:intron 25.0%
!! TCTTTAAGCTTTTTACCAAA+AGG - chr5_4:1974824-1974843 None:intergenic 25.0%
! TGTCATTTCGATTAGGTTAT+TGG - chr5_4:1971551-1971570 None:intergenic 30.0%
GATCAACTAGCATAAGAAAA+TGG - chr5_4:1971832-1971851 None:intergenic 30.0%
ATAAGTAGATTGTACTTGGA+TGG + chr5_4:1971872-1971891 Msa0829000:intron 30.0%
TAATCCCTGTCAATGAAAAT+AGG - chr5_4:1972168-1972187 None:intergenic 30.0%
AGGCATCATAATCATATACA+AGG + chr5_4:1972351-1972370 Msa0829000:intron 30.0%
CTATCATGTATAAGAACCAT+AGG - chr5_4:1972391-1972410 None:intergenic 30.0%
ACTCATACTATAAGCACATA+CGG - chr5_4:1972466-1972485 None:intergenic 30.0%
TCAAATTAATCCTTGTACTG+GGG - chr5_4:1972536-1972555 None:intergenic 30.0%
CTCAAATTAATCCTTGTACT+GGG - chr5_4:1972537-1972556 None:intergenic 30.0%
ACTCAAATTAATCCTTGTAC+TGG - chr5_4:1972538-1972557 None:intergenic 30.0%
GCTCTCAAGAAATATCATTT+GGG - chr5_4:1972690-1972709 None:intergenic 30.0%
TGCTCTCAAGAAATATCATT+TGG - chr5_4:1972691-1972710 None:intergenic 30.0%
ATTATTACCTTTACTGTTGC+AGG + chr5_4:1972751-1972770 Msa0829000:intron 30.0%
! ACTAGCTTACATGACTTTAA+TGG + chr5_4:1973112-1973131 Msa0829000:intron 30.0%
CTAGCTTACATGACTTTAAT+GGG + chr5_4:1973113-1973132 Msa0829000:intron 30.0%
TAGAACTTCAACACTGTATT+AGG - chr5_4:1973229-1973248 None:intergenic 30.0%
GCATGTTTAGATACTTATCT+AGG + chr5_4:1973258-1973277 Msa0829000:intron 30.0%
GAATCCATTATCTAAGAAAG+TGG - chr5_4:1973291-1973310 None:intergenic 30.0%
TCTGTGCAATCTAATAACAT+AGG + chr5_4:1973333-1973352 Msa0829000:intron 30.0%
CAATCTAATAACATAGGTTG+TGG + chr5_4:1973339-1973358 Msa0829000:intron 30.0%
!! AAATGAAAGTACCTCTTATC+CGG - chr5_4:1973381-1973400 None:intergenic 30.0%
ATAACTTGAAATACAGTCAG+TGG + chr5_4:1973576-1973595 Msa0829000:intron 30.0%
GAAAAATGCAATAATGTTGG+TGG + chr5_4:1973973-1973992 Msa0829000:intron 30.0%
TACTTACTTGTTCAGCATTT+CGG - chr5_4:1974026-1974045 None:intergenic 30.0%
!!! TATCTTACTTGGCTACTTTT+GGG - chr5_4:1974255-1974274 None:intergenic 30.0%
! CTGTGATAATGTATCTTACT+TGG - chr5_4:1974266-1974285 None:intergenic 30.0%
ATAATTACATGAACAGGTGA+TGG + chr5_4:1974325-1974344 Msa0829000:intron 30.0%
GATCTTATTGGAAAACCATA+CGG + chr5_4:1974365-1974384 Msa0829000:CDS 30.0%
ACTTAAATATACACAGCTTC+TGG + chr5_4:1974756-1974775 Msa0829000:intron 30.0%
TTTCCAACTCCTATAGTTAT+AGG - chr5_4:1974922-1974941 None:intergenic 30.0%
GTTGGAAATATCATTTCTGA+AGG + chr5_4:1974934-1974953 Msa0829000:CDS 30.0%
!!! TTTTTCATTGATGATGTCTC+CGG + chr5_4:1974960-1974979 Msa0829000:CDS 30.0%
!! TATTGGCTTATTGCTAACAG+AGG - chr5_4:1971534-1971553 None:intergenic 35.0%
! ACAGTGTTGTCATTTCGATT+AGG - chr5_4:1971558-1971577 None:intergenic 35.0%
AACACTTGAGGTCAATTACT+TGG - chr5_4:1972101-1972120 None:intergenic 35.0%
ACCTCAAGTGTTAATGAATC+CGG + chr5_4:1972109-1972128 Msa0829000:intron 35.0%
!! AAGTTCTGAATCCTATCTCA+CGG - chr5_4:1972277-1972296 None:intergenic 35.0%
TGTATAAGAACCATAGGTGT+AGG - chr5_4:1972385-1972404 None:intergenic 35.0%
GAAAAAATTACCCCAGTACA+AGG + chr5_4:1972523-1972542 Msa0829000:intron 35.0%
TTTGCACGAACATCTTCATT+TGG + chr5_4:1972934-1972953 Msa0829000:intron 35.0%
!! TTACATGACTTTAATGGGCT+TGG + chr5_4:1973118-1973137 Msa0829000:intron 35.0%
!! TACATGACTTTAATGGGCTT+GGG + chr5_4:1973119-1973138 Msa0829000:intron 35.0%
ATAAGAGCAATGCATTCACA+AGG + chr5_4:1973422-1973441 Msa0829000:intron 35.0%
TCCATACAGTGTAAGCAATT+GGG + chr5_4:1973497-1973516 Msa0829000:intron 35.0%
ATCTCTAACTGAAATCCCTA+GGG + chr5_4:1973778-1973797 Msa0829000:intron 35.0%
ATATCTATAGTTCGAGCTGT+TGG - chr5_4:1973826-1973845 None:intergenic 35.0%
! GCAAACGAGCTTATTTGTTT+TGG + chr5_4:1974224-1974243 Msa0829000:CDS 35.0%
!! GTATCTTACTTGGCTACTTT+TGG - chr5_4:1974256-1974275 None:intergenic 35.0%
TTGAACGTAGGTGATCTTAT+TGG + chr5_4:1974353-1974372 Msa0829000:CDS 35.0%
TTATGTAAGCTTCACCTTAC+TGG + chr5_4:1974403-1974422 Msa0829000:intron 35.0%
TCTCTCGTACAAGATATATC+TGG + chr5_4:1974476-1974495 Msa0829000:intron 35.0%
GATACTTCCCTAAGTAAGAA+AGG + chr5_4:1974629-1974648 Msa0829000:intron 35.0%
ATCCATGCCTTTCTTACTTA+GGG - chr5_4:1974639-1974658 None:intergenic 35.0%
TATCCATGCCTTTCTTACTT+AGG - chr5_4:1974640-1974659 None:intergenic 35.0%
TATGTAAAAGAGGTAGCCAT+AGG - chr5_4:1974717-1974736 None:intergenic 35.0%
GATAAGCAGCCTATAACTAT+AGG + chr5_4:1974910-1974929 Msa0829000:CDS 35.0%
! GGAAATATCATTTCTGAAGG+TGG + chr5_4:1974937-1974956 Msa0829000:CDS 35.0%
CTTCGAAGGTTGAAGTAAGA+TGG - chr5_4:1971586-1971605 None:intergenic 40.0%
AATAGTGAAGATGGAGACCA+TGG - chr5_4:1971613-1971632 None:intergenic 40.0%
GGTTTGAGGAATAGTGAAGA+TGG - chr5_4:1971622-1971641 None:intergenic 40.0%
TTGGGAGTAAACAAGGTTTG+AGG - chr5_4:1971636-1971655 None:intergenic 40.0%
TCTTGTTCTTCTTGTTGCGT+TGG - chr5_4:1971678-1971697 None:intergenic 40.0%
TGGAAATTACCAAGAAGTCG+TGG - chr5_4:1971765-1971784 None:intergenic 40.0%
TCCGGATTCATTAACACTTG+AGG - chr5_4:1972113-1972132 None:intergenic 40.0%
CCCTGTCAATGAAAATAGGA+GGG - chr5_4:1972164-1972183 None:intergenic 40.0%
! CCCTCCTATTTTCATTGACA+GGG + chr5_4:1972161-1972180 Msa0829000:intron 40.0%
TCCCTGTCAATGAAAATAGG+AGG - chr5_4:1972165-1972184 None:intergenic 40.0%
TACTAAAATGGCCGTGAGAT+AGG + chr5_4:1972263-1972282 Msa0829000:intron 40.0%
! TCATAACGATGAAGAAGCAC+TGG + chr5_4:1972829-1972848 Msa0829000:CDS 40.0%
GAGAACATGCATTTAGCTAC+AGG - chr5_4:1972908-1972927 None:intergenic 40.0%
GTTGTGGATCTTTCACACTT+CGG + chr5_4:1973355-1973374 Msa0829000:CDS 40.0%
TGCATTGCTCTTATGTGGAA+AGG - chr5_4:1973416-1973435 None:intergenic 40.0%
GTGAATGCATTGCTCTTATG+TGG - chr5_4:1973421-1973440 None:intergenic 40.0%
GTCCATACAGTGTAAGCAAT+TGG + chr5_4:1973496-1973515 Msa0829000:intron 40.0%
TCCCAATTGCTTACACTGTA+TGG - chr5_4:1973501-1973520 None:intergenic 40.0%
!! CAGAGTACTGCAAACTTTGA+GGG + chr5_4:1973627-1973646 Msa0829000:CDS 40.0%
GATCTCTAACTGAAATCCCT+AGG + chr5_4:1973777-1973796 Msa0829000:intron 40.0%
AAAACAGTGTCACATCCCTA+GGG - chr5_4:1973796-1973815 None:intergenic 40.0%
AAAAACAGTGTCACATCCCT+AGG - chr5_4:1973797-1973816 None:intergenic 40.0%
CTATAGATATTGCACATGCG+TGG + chr5_4:1973836-1973855 Msa0829000:CDS 40.0%
CTTGTTCAGCATTTCGGTAA+TGG - chr5_4:1974020-1974039 None:intergenic 40.0%
TTACTGTTAGGATTCTCCGA+CGG + chr5_4:1974057-1974076 Msa0829000:intron 40.0%
! ATTTTCGGTTTAACCTCCGT+CGG - chr5_4:1974076-1974095 None:intergenic 40.0%
!!! ACGAGCTTATTTGTTTTGGC+AGG + chr5_4:1974228-1974247 Msa0829000:CDS 40.0%
AGTTGTGAGAATGACAGAGT+CGG + chr5_4:1974291-1974310 Msa0829000:intron 40.0%
! AAATGTTGATGAGTGCCGTA+TGG - chr5_4:1974383-1974402 None:intergenic 40.0%
ATGACACGATTGAGCATGTA+AGG - chr5_4:1974574-1974593 None:intergenic 40.0%
TTCCCTAAGTAAGAAAGGCA+TGG + chr5_4:1974634-1974653 Msa0829000:intron 40.0%
!! TTTGCTTTTGGCAACGCTTT+TGG + chr5_4:1974674-1974693 Msa0829000:intron 40.0%
AGAGGTAGCCATAGGATAAT+AGG - chr5_4:1974709-1974728 None:intergenic 40.0%
CAGCCTATAACTATAGGAGT+TGG + chr5_4:1974916-1974935 Msa0829000:CDS 40.0%
AGAATAGCTTTCCAGACAGA+TGG - chr5_4:1974994-1975013 None:intergenic 40.0%
TGGAAAGCTATTCTTGCTCA+AGG + chr5_4:1975000-1975019 Msa0829000:CDS 40.0%
GGAAAGCTATTCTTGCTCAA+GGG + chr5_4:1975001-1975020 Msa0829000:CDS 40.0%
GAAAGCTATTCTTGCTCAAG+GGG + chr5_4:1975002-1975021 Msa0829000:CDS 40.0%
! TTGCAATGGGTTCTAATGCT+TGG + chr5_4:1975028-1975047 Msa0829000:CDS 40.0%
CTGAGGTTTGGGAGTAAACA+AGG - chr5_4:1971643-1971662 None:intergenic 45.0%
! GTGAGCAGAATCTGAGGTTT+GGG - chr5_4:1971654-1971673 None:intergenic 45.0%
! TGTGAGCAGAATCTGAGGTT+TGG - chr5_4:1971655-1971674 None:intergenic 45.0%
! GCCCTCCTATTTTCATTGAC+AGG + chr5_4:1972160-1972179 Msa0829000:intron 45.0%
!! CCATTTTAGTAGCTGAGGTG+GGG - chr5_4:1972254-1972273 None:intergenic 45.0%
!! GCCATTTTAGTAGCTGAGGT+GGG - chr5_4:1972255-1972274 None:intergenic 45.0%
ATTATGATGCCTACGAGTCG+AGG - chr5_4:1972343-1972362 None:intergenic 45.0%
ACAGTGTCCTGCAACAGTAA+AGG - chr5_4:1972761-1972780 None:intergenic 45.0%
TACAACAACCCCATTGTCTG+CGG - chr5_4:1972858-1972877 None:intergenic 45.0%
GCTTGGGATGATATTAGCTC+AGG + chr5_4:1973135-1973154 Msa0829000:intron 45.0%
TTGCAGTACTCTGGTTGTGA+AGG - chr5_4:1973620-1973639 None:intergenic 45.0%
CCTCAAAGTTTGCAGTACTC+TGG - chr5_4:1973629-1973648 None:intergenic 45.0%
!! CCAGAGTACTGCAAACTTTG+AGG + chr5_4:1973626-1973645 Msa0829000:CDS 45.0%
! TGCAAACTTTGAGGGTCTAC+AGG + chr5_4:1973635-1973654 Msa0829000:CDS 45.0%
TATTGCACATGCGTGGATCA+TGG + chr5_4:1973843-1973862 Msa0829000:CDS 45.0%
TGGTTTCAGCAGAGACTTGT+AGG + chr5_4:1973993-1974012 Msa0829000:CDS 45.0%
! GTGATGGAAAGCTTGAACGT+AGG + chr5_4:1974341-1974360 Msa0829000:CDS 45.0%
!!! TATTTAAATTTAAAAGTTTT+GGG - chr5_4:1973456-1973475 None:intergenic 5.0%
!!! ATATTTAAATTTAAAAGTTT+TGG - chr5_4:1973457-1973476 None:intergenic 5.0%
TCAACCTTCGAAGCCAACCA+TGG + chr5_4:1971593-1971612 Msa0829000:CDS 50.0%
GTGAAGATGGAGACCATGGT+TGG - chr5_4:1971609-1971628 None:intergenic 50.0%
GTTGGTGTGAGCAGAATCTG+AGG - chr5_4:1971660-1971679 None:intergenic 50.0%
ACCAAGAAGTCGTGGTCGAT+GGG - chr5_4:1971757-1971776 None:intergenic 50.0%
TACCAAGAAGTCGTGGTCGA+TGG - chr5_4:1971758-1971777 None:intergenic 50.0%
! TTTTAGTAGCTGAGGTGGGG+AGG - chr5_4:1972251-1972270 None:intergenic 50.0%
CCCCACCTCAGCTACTAAAA+TGG + chr5_4:1972251-1972270 Msa0829000:intron 50.0%
!! GGCCATTTTAGTAGCTGAGG+TGG - chr5_4:1972256-1972275 None:intergenic 50.0%
!! CACGGCCATTTTAGTAGCTG+AGG - chr5_4:1972259-1972278 None:intergenic 50.0%
! TCATAAGCTCCTCGACTCGT+AGG + chr5_4:1972331-1972350 Msa0829000:intron 50.0%
GGATCGAGAACCTACACCTA+TGG + chr5_4:1972372-1972391 Msa0829000:intron 50.0%
CAGGACACTGTCAAAACTGC+AGG + chr5_4:1972770-1972789 Msa0829000:intron 50.0%
TGGATCTTTCACACTTCGGC+CGG + chr5_4:1973359-1973378 Msa0829000:CDS 50.0%
! AACTTTGAGGGTCTACAGGC+AGG + chr5_4:1973639-1973658 Msa0829000:CDS 50.0%
! ACTTTGAGGGTCTACAGGCA+GGG + chr5_4:1973640-1973659 Msa0829000:CDS 50.0%
!! GAGACCATGGTTGGCTTCGA+AGG - chr5_4:1971600-1971619 None:intergenic 55.0%
AAGAAGTCGTGGTCGATGGG+TGG - chr5_4:1971754-1971773 None:intergenic 55.0%
ACCCATCGACCACGACTTCT+TGG + chr5_4:1971753-1971772 Msa0829000:CDS 55.0%
! TGTCAAAACTGCAGGTGCCG+AGG + chr5_4:1972778-1972797 Msa0829000:CDS 55.0%
GATCCCTTCCCCAGAAACCT+CGG - chr5_4:1972798-1972817 None:intergenic 55.0%
CACTGGATGCCGCAGACAAT+GGG + chr5_4:1972846-1972865 Msa0829000:CDS 55.0%
ACTGGATGCCGCAGACAATG+GGG + chr5_4:1972847-1972866 Msa0829000:CDS 55.0%
TCACACTTCGGCCGGATAAG+AGG + chr5_4:1973367-1973386 Msa0829000:CDS 55.0%
CTACAGGCAGGGCAAGTATG+TGG + chr5_4:1973651-1973670 Msa0829000:intron 55.0%
CTGTTAGGATTCTCCGACGG+AGG + chr5_4:1974060-1974079 Msa0829000:intron 55.0%
TGCTCAAGGGGCTGTTGCAA+TGG + chr5_4:1975014-1975033 Msa0829000:CDS 55.0%
GCTCAAGGGGCTGTTGCAAT+GGG + chr5_4:1975015-1975034 Msa0829000:CDS 55.0%
AGTCGTGGTCGATGGGTGGA+GGG - chr5_4:1971750-1971769 None:intergenic 60.0%
AAGTCGTGGTCGATGGGTGG+AGG - chr5_4:1971751-1971770 None:intergenic 60.0%
!! ACTGCAGGTGCCGAGGTTTC+TGG + chr5_4:1972785-1972804 Msa0829000:CDS 60.0%
!! CTGCAGGTGCCGAGGTTTCT+GGG + chr5_4:1972786-1972805 Msa0829000:CDS 60.0%
!! TGCAGGTGCCGAGGTTTCTG+GGG + chr5_4:1972787-1972806 Msa0829000:CDS 60.0%
! GTGCCGAGGTTTCTGGGGAA+GGG + chr5_4:1972792-1972811 Msa0829000:CDS 60.0%
GCACTGGATGCCGCAGACAA+TGG + chr5_4:1972845-1972864 Msa0829000:CDS 60.0%
CAGACAGATGGAGCAGCTGC+CGG - chr5_4:1974982-1975001 None:intergenic 60.0%
GGTCGATGGGTGGAGGGGAA+AGG - chr5_4:1971744-1971763 None:intergenic 65.0%
GTCGTGGTCGATGGGTGGAG+GGG - chr5_4:1971749-1971768 None:intergenic 65.0%
! GGTGCCGAGGTTTCTGGGGA+AGG + chr5_4:1972791-1972810 Msa0829000:CDS 65.0%
CGGCAGCTGCTCCATCTGTC+TGG + chr5_4:1974980-1974999 Msa0829000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 1971525 1975071 1971525 ID=Msa0829000;Name=Msa0829000
chr5_4 mRNA 1971525 1975071 1971525 ID=Msa0829000-mRNA-1;Parent=Msa0829000;Name=Msa0829000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=40|1|0.88|1|1|1|9|0|290
chr5_4 exon 1971525 1971774 1971525 ID=Msa0829000-mRNA-1:exon:559;Parent=Msa0829000-mRNA-1
chr5_4 exon 1972773 1972874 1972773 ID=Msa0829000-mRNA-1:exon:560;Parent=Msa0829000-mRNA-1
chr5_4 exon 1973355 1973388 1973355 ID=Msa0829000-mRNA-1:exon:561;Parent=Msa0829000-mRNA-1
chr5_4 exon 1973592 1973665 1973592 ID=Msa0829000-mRNA-1:exon:562;Parent=Msa0829000-mRNA-1
chr5_4 exon 1973799 1973864 1973799 ID=Msa0829000-mRNA-1:exon:563;Parent=Msa0829000-mRNA-1
chr5_4 exon 1973974 1974038 1973974 ID=Msa0829000-mRNA-1:exon:564;Parent=Msa0829000-mRNA-1
chr5_4 exon 1974179 1974266 1974179 ID=Msa0829000-mRNA-1:exon:565;Parent=Msa0829000-mRNA-1
chr5_4 exon 1974341 1974406 1974341 ID=Msa0829000-mRNA-1:exon:566;Parent=Msa0829000-mRNA-1
chr5_4 exon 1974907 1975071 1974907 ID=Msa0829000-mRNA-1:exon:567;Parent=Msa0829000-mRNA-1
chr5_4 five_prime_UTR 1971525 1971564 1971525 ID=Msa0829000-mRNA-1:five_prime_utr;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1971565 1971774 1971565 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1972773 1972874 1972773 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1973355 1973388 1973355 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1973592 1973665 1973592 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1973799 1973864 1973799 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1973974 1974038 1973974 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1974179 1974266 1974179 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1974341 1974406 1974341 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
chr5_4 CDS 1974907 1975071 1974907 ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1
Gene Sequence

>Msa0829000

ATGACAACACTGTCACTGCCATCTTACTTCAACCTTCGAAGCCAACCATGGTCTCCATCTTCACTATTCCTCAAACCTTGTTTACTCCCAAACCTCAGATTCTGCTCACACCAACGCAACAAGAAGAACAAGAATCAAATTTCTTACTCTATTTCTGCTCAATCTTCATCTTTCGACCTTTCCCCTCCACCCATCGACCACGACTTCTTGGACACTGTCAAAACTGCAGGTGCCGAGGTTTCTGGGGAAGGGATCGTTGAAACATTTCATAACGATGAAGAAGCACTGGATGCCGCAGACAATGGGGTTGTTGTTGTGGATCTTTCACACTTCGGCCGGATAAGAGTCAGTGGAGATGATCGCGTTCAGTTCCTTCACAACCAGAGTACTGCAAACTTTGAGGGTCTACAGGCAGGGCAAGGATGTGACACTGTTTTTGTAACACCAACAGCTCGAACTATAGATATTGCACATGCGTGGATCATGAAAAATGCAATAATGTTGGTGGTTTCAGCAGAGACTTGTAGGACCATTACCGAAATGCTGAACAAGTACATATTTTTTGCTGATAAGGTAGAGATTCAAGACATCACGAAGCAAACGAGCTTATTTGTTTTGGCAGGACCCAAAAGTAGCCAAGTGATGGAAAGCTTGAACGTAGGTGATCTTATTGGAAAACCATACGGCACTCATCAACATTTTTATGTTGATAAGCAGCCTATAACTATAGGAGTTGGAAATATCATTTCTGAAGGTGGTTTTTCATTGATGATGTCTCCGGCAGCTGCTCCATCTGTCTGGAAAGCTATTCTTGCTCAAGGGGCTGTTGCAATGGGTTCTAATGCTTGGAATAAGTTGCGAGTTATCCAA

Protein sequence

>Msa0829000

MTTLSLPSYFNLRSQPWSPSSLFLKPCLLPNLRFCSHQRNKKNKNQISYSISAQSSSFDLSPPPIDHDFLDTVKTAGAEVSGEGIVETFHNDEEALDAADNGVVVVDLSHFGRIRVSGDDRVQFLHNQSTANFEGLQAGQGCDTVFVTPTARTIDIAHAWIMKNAIMLVVSAETCRTITEMLNKYIFFADKVEIQDITKQTSLFVLAGPKSSQVMESLNVGDLIGKPYGTHQHFYVDKQPITIGVGNIISEGGFSLMMSPAAAPSVWKAILAQGAVAMGSNAWNKLRVIQ