Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829000 | XP_003629967.1 | 97.586 | 290 | 7 | 0 | 1 | 290 | 1 | 290 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829000 | sp|Q681Y3|Y1099_ARATH | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.70e-131 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829000 | G7L8V3 | 97.586 | 290 | 7 | 0 | 1 | 290 | 1 | 290 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614400 | Msa0829000 | 0.803008 | 4.278129e-49 | -8.615850e-47 |
| Msa0647220 | Msa0829000 | 0.810919 | 9.072028e-51 | -8.615850e-47 |
| Msa0657670 | Msa0829000 | 0.826085 | 3.291137e-54 | -8.615850e-47 |
| Msa0829000 | Msa1438270 | 0.857560 | 1.501534e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829000 | MtrunA17_Chr8g0380691 | 97.586 | 290 | 7 | 0 | 1 | 290 | 1 | 290 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829000 | AT1G60990.3 | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.81e-132 | 381 |
| Msa0829000 | AT1G60990.2 | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.81e-132 | 381 |
| Msa0829000 | AT1G60990.1 | 65.942 | 276 | 83 | 2 | 24 | 290 | 27 | 300 | 6.81e-132 | 381 |
Find 75 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCTTACTTGGCTACTTT+TGG | 0.165355 | 5_4:-1974253 | None:intergenic |
| ACTGCAGGTGCCGAGGTTTC+TGG | 0.175027 | 5_4:+1972785 | Msa0829000:CDS |
| TTTCCAACTCCTATAGTTAT+AGG | 0.205103 | 5_4:-1974919 | None:intergenic |
| TGTCATTTCGATTAGGTTAT+TGG | 0.218981 | 5_4:-1971548 | None:intergenic |
| ACCCATCGACCACGACTTCT+TGG | 0.283454 | 5_4:+1971753 | Msa0829000:CDS |
| TACTTACTTGTTCAGCATTT+CGG | 0.314008 | 5_4:-1974023 | None:intergenic |
| GCAAACGAGCTTATTTGTTT+TGG | 0.315922 | 5_4:+1974224 | Msa0829000:CDS |
| CACTGGATGCCGCAGACAAT+GGG | 0.348039 | 5_4:+1972846 | Msa0829000:CDS |
| TTGAACGTAGGTGATCTTAT+TGG | 0.350341 | 5_4:+1974353 | Msa0829000:CDS |
| CTGCAGGTGCCGAGGTTTCT+GGG | 0.353745 | 5_4:+1972786 | Msa0829000:CDS |
| TGCTCAAGGGGCTGTTGCAA+TGG | 0.369762 | 5_4:+1975014 | Msa0829000:CDS |
| CTTGTTCAGCATTTCGGTAA+TGG | 0.379644 | 5_4:-1974017 | None:intergenic |
| GCTCAAGGGGCTGTTGCAAT+GGG | 0.395855 | 5_4:+1975015 | Msa0829000:CDS |
| TGGTTTCAGCAGAGACTTGT+AGG | 0.401443 | 5_4:+1973993 | Msa0829000:CDS |
| CGGCAGCTGCTCCATCTGTC+TGG | 0.407182 | 5_4:+1974980 | Msa0829000:CDS |
| CCAGAGTACTGCAAACTTTG+AGG | 0.413393 | 5_4:+1973626 | Msa0829000:CDS |
| ACAGTGTTGTCATTTCGATT+AGG | 0.418788 | 5_4:-1971555 | None:intergenic |
| AACTTTGAGGGTCTACAGGC+AGG | 0.423954 | 5_4:+1973639 | Msa0829000:CDS |
| TCACACTTCGGCCGGATAAG+AGG | 0.440438 | 5_4:+1973367 | Msa0829000:CDS |
| GATAAGCAGCCTATAACTAT+AGG | 0.445173 | 5_4:+1974910 | Msa0829000:CDS |
| GGTGCCGAGGTTTCTGGGGA+AGG | 0.446680 | 5_4:+1972791 | Msa0829000:CDS |
| TGCAAACTTTGAGGGTCTAC+AGG | 0.456706 | 5_4:+1973635 | Msa0829000:CDS |
| CTGAGGTTTGGGAGTAAACA+AGG | 0.460947 | 5_4:-1971640 | None:intergenic |
| CAGAGTACTGCAAACTTTGA+GGG | 0.462222 | 5_4:+1973627 | Msa0829000:CDS |
| GCACTGGATGCCGCAGACAA+TGG | 0.467510 | 5_4:+1972845 | Msa0829000:CDS |
| AAGTCGTGGTCGATGGGTGG+AGG | 0.470425 | 5_4:-1971748 | None:intergenic |
| TGTGAGCAGAATCTGAGGTT+TGG | 0.470983 | 5_4:-1971652 | None:intergenic |
| AAATGAAAGTACCTCTTATC+CGG | 0.476064 | 5_4:-1973378 | None:intergenic |
| GGTCGATGGGTGGAGGGGAA+AGG | 0.476226 | 5_4:-1971741 | None:intergenic |
| GTGAGCAGAATCTGAGGTTT+GGG | 0.480461 | 5_4:-1971651 | None:intergenic |
| TTGCAATGGGTTCTAATGCT+TGG | 0.480918 | 5_4:+1975028 | Msa0829000:CDS |
| TCTTGTTCTTCTTGTTGCGT+TGG | 0.487003 | 5_4:-1971675 | None:intergenic |
| GGTTTGAGGAATAGTGAAGA+TGG | 0.488115 | 5_4:-1971619 | None:intergenic |
| CCTCAAAGTTTGCAGTACTC+TGG | 0.489181 | 5_4:-1973626 | None:intergenic |
| CTTCGAAGGTTGAAGTAAGA+TGG | 0.490320 | 5_4:-1971583 | None:intergenic |
| CAGCCTATAACTATAGGAGT+TGG | 0.503689 | 5_4:+1974916 | Msa0829000:CDS |
| GGAAATATCATTTCTGAAGG+TGG | 0.508021 | 5_4:+1974937 | Msa0829000:CDS |
| GTGCCGAGGTTTCTGGGGAA+GGG | 0.511609 | 5_4:+1972792 | Msa0829000:CDS |
| TACCAAGAAGTCGTGGTCGA+TGG | 0.513887 | 5_4:-1971755 | None:intergenic |
| TATTGCACATGCGTGGATCA+TGG | 0.521802 | 5_4:+1973843 | Msa0829000:CDS |
| AGTCGTGGTCGATGGGTGGA+GGG | 0.521890 | 5_4:-1971747 | None:intergenic |
| TGGATCTTTCACACTTCGGC+CGG | 0.524782 | 5_4:+1973359 | Msa0829000:CDS |
| ACCAAGAAGTCGTGGTCGAT+GGG | 0.525840 | 5_4:-1971754 | None:intergenic |
| TTGGGAGTAAACAAGGTTTG+AGG | 0.530532 | 5_4:-1971633 | None:intergenic |
| GAGACCATGGTTGGCTTCGA+AGG | 0.530681 | 5_4:-1971597 | None:intergenic |
| CAGACAGATGGAGCAGCTGC+CGG | 0.543197 | 5_4:-1974979 | None:intergenic |
| AGAATAGCTTTCCAGACAGA+TGG | 0.545861 | 5_4:-1974991 | None:intergenic |
| GTCGTGGTCGATGGGTGGAG+GGG | 0.550885 | 5_4:-1971746 | None:intergenic |
| ATATCTATAGTTCGAGCTGT+TGG | 0.554752 | 5_4:-1973823 | None:intergenic |
| CAGGACACTGTCAAAACTGC+AGG | 0.559001 | 5_4:+1972770 | Msa0829000:intron |
| TGGAAAGCTATTCTTGCTCA+AGG | 0.559551 | 5_4:+1975000 | Msa0829000:CDS |
| TCATAACGATGAAGAAGCAC+TGG | 0.561241 | 5_4:+1972829 | Msa0829000:CDS |
| GTTGGAAATATCATTTCTGA+AGG | 0.563837 | 5_4:+1974934 | Msa0829000:CDS |
| GAAAGCTATTCTTGCTCAAG+GGG | 0.565925 | 5_4:+1975002 | Msa0829000:CDS |
| GTTGTGGATCTTTCACACTT+CGG | 0.568328 | 5_4:+1973355 | Msa0829000:CDS |
| GGAAAGCTATTCTTGCTCAA+GGG | 0.577897 | 5_4:+1975001 | Msa0829000:CDS |
| TTGCAGTACTCTGGTTGTGA+AGG | 0.585064 | 5_4:-1973617 | None:intergenic |
| TGCAGGTGCCGAGGTTTCTG+GGG | 0.597176 | 5_4:+1972787 | Msa0829000:CDS |
| GTGATGGAAAGCTTGAACGT+AGG | 0.598517 | 5_4:+1974341 | Msa0829000:CDS |
| GATCCCTTCCCCAGAAACCT+CGG | 0.605258 | 5_4:-1972795 | None:intergenic |
| GATCTTATTGGAAAACCATA+CGG | 0.606440 | 5_4:+1974365 | Msa0829000:CDS |
| AATAAGTTGCGAGTTATCCA+AGG | 0.609619 | 5_4:+1975051 | Msa0829000:CDS |
| AAGAAGTCGTGGTCGATGGG+TGG | 0.610174 | 5_4:-1971751 | None:intergenic |
| ACTTTGAGGGTCTACAGGCA+GGG | 0.610437 | 5_4:+1973640 | Msa0829000:CDS |
| CTATAGATATTGCACATGCG+TGG | 0.626627 | 5_4:+1973836 | Msa0829000:CDS |
| TGTCAAAACTGCAGGTGCCG+AGG | 0.627788 | 5_4:+1972778 | Msa0829000:CDS |
| AAATGTTGATGAGTGCCGTA+TGG | 0.628277 | 5_4:-1974380 | None:intergenic |
| TACAACAACCCCATTGTCTG+CGG | 0.628493 | 5_4:-1972855 | None:intergenic |
| TATTGGCTTATTGCTAACAG+AGG | 0.630705 | 5_4:-1971531 | None:intergenic |
| AATAGTGAAGATGGAGACCA+TGG | 0.638511 | 5_4:-1971610 | None:intergenic |
| GTGAAGATGGAGACCATGGT+TGG | 0.640860 | 5_4:-1971606 | None:intergenic |
| TCAACCTTCGAAGCCAACCA+TGG | 0.648406 | 5_4:+1971593 | Msa0829000:CDS |
| GTTGGTGTGAGCAGAATCTG+AGG | 0.669720 | 5_4:-1971657 | None:intergenic |
| TGGAAATTACCAAGAAGTCG+TGG | 0.686676 | 5_4:-1971762 | None:intergenic |
| ACTGGATGCCGCAGACAATG+GGG | 0.712791 | 5_4:+1972847 | Msa0829000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTCATATTATAATAC+AGG | + | chr5_4:1973742-1973761 | Msa0829000:intron | 10.0% |
| !!! | TTTTTTGTTAAAAATAAGAA+AGG | - | chr5_4:1974549-1974568 | None:intergenic | 10.0% |
| !!! | ATTCTCAAATATATATATTT+TGG | + | chr5_4:1974875-1974894 | Msa0829000:intron | 10.0% |
| !!! | CTTATTTTATATGAATTTTC+AGG | - | chr5_4:1971857-1971876 | None:intergenic | 15.0% |
| !! | TCCTTAAATTGATTAATTTA+TGG | + | chr5_4:1973015-1973034 | Msa0829000:intron | 15.0% |
| !! | ACCATAAATTAATCAATTTA+AGG | - | chr5_4:1973019-1973038 | None:intergenic | 15.0% |
| !!! | TAATTTTAACACGAATATTT+TGG | + | chr5_4:1973553-1973572 | Msa0829000:intron | 15.0% |
| !!! | TAAAAATGATTTTTGAAAGA+GGG | - | chr5_4:1973883-1973902 | None:intergenic | 15.0% |
| !!! | TTGTTCTTTTATCTTATTTT+CGG | - | chr5_4:1974091-1974110 | None:intergenic | 15.0% |
| !! | CATTAACTAAATGATTTATA+TGG | + | chr5_4:1974144-1974163 | Msa0829000:intron | 15.0% |
| !! | TTTAATATAATTACATGAAC+AGG | + | chr5_4:1974319-1974338 | Msa0829000:intron | 15.0% |
| !!! | ATATTTAAGTTATGTAAAAG+AGG | - | chr5_4:1974727-1974746 | None:intergenic | 15.0% |
| !!! | ATATATATTTTGGAATTTGT+AGG | + | chr5_4:1974885-1974904 | Msa0829000:intron | 15.0% |
| !! | TAAAATAAGTAGATTGTACT+TGG | + | chr5_4:1971868-1971887 | Msa0829000:intron | 20.0% |
| !! | TAATGTTGAATTCATTTGTT+TGG | + | chr5_4:1971918-1971937 | Msa0829000:intron | 20.0% |
| !!! | TCAAACTACAAATTTTGAAA+AGG | - | chr5_4:1972061-1972080 | None:intergenic | 20.0% |
| !! | ATGAAAGAAAATGATATATC+CGG | - | chr5_4:1972131-1972150 | None:intergenic | 20.0% |
| !!! | TATATCATTTTCTTTCATCA+AGG | + | chr5_4:1972133-1972152 | Msa0829000:intron | 20.0% |
| !!! | ATGATAGTCATTTTCAATTT+AGG | + | chr5_4:1972404-1972423 | Msa0829000:intron | 20.0% |
| !!! | TGATAGTCATTTTCAATTTA+GGG | + | chr5_4:1972405-1972424 | Msa0829000:intron | 20.0% |
| !! | AATAGACAATTGTGTAAAAT+TGG | - | chr5_4:1972594-1972613 | None:intergenic | 20.0% |
| !! | TATTGTAATAAGAGGAAATA+GGG | - | chr5_4:1972624-1972643 | None:intergenic | 20.0% |
| !! | ATATTGTAATAAGAGGAAAT+AGG | - | chr5_4:1972625-1972644 | None:intergenic | 20.0% |
| !! | AGAAGTAATATTGTAATAAG+AGG | - | chr5_4:1972632-1972651 | None:intergenic | 20.0% |
| !!! | TCATTTGGGTATTTTAAAAA+AGG | - | chr5_4:1972676-1972695 | None:intergenic | 20.0% |
| !! | GGTAATAATTAAACAAACAA+AGG | - | chr5_4:1972740-1972759 | None:intergenic | 20.0% |
| !!! | TAAATTTAAAAGTTTTGGGA+GGG | - | chr5_4:1973452-1973471 | None:intergenic | 20.0% |
| !!! | TTAAATTTAAAAGTTTTGGG+AGG | - | chr5_4:1973453-1973472 | None:intergenic | 20.0% |
| !! | ATAATACAGGATTAAGTAAT+AGG | + | chr5_4:1973755-1973774 | Msa0829000:intron | 20.0% |
| !!! | GTAAAAATGATTTTTGAAAG+AGG | - | chr5_4:1973884-1973903 | None:intergenic | 20.0% |
| !!! | AACTTGTATATTTTACTGTT+AGG | + | chr5_4:1974045-1974064 | Msa0829000:intron | 20.0% |
| !!! | TGTTTTTGATAATATTCATC+AGG | - | chr5_4:1974126-1974145 | None:intergenic | 20.0% |
| !! | ATTTATATGGAATGATTTCA+AGG | + | chr5_4:1974157-1974176 | Msa0829000:intron | 20.0% |
| !! | TTTACAAAAAATAACCAGTA+AGG | - | chr5_4:1974420-1974439 | None:intergenic | 20.0% |
| !!! | TTTGTAATTACTAGTTTTCT+TGG | + | chr5_4:1974441-1974460 | Msa0829000:intron | 20.0% |
| !!! | TTGTAATTACTAGTTTTCTT+GGG | + | chr5_4:1974442-1974461 | Msa0829000:intron | 20.0% |
| !! | GTTAAAAATAAGAAAGGTTA+AGG | - | chr5_4:1974543-1974562 | None:intergenic | 20.0% |
| !! | AGAATATTAACAGATAATGT+AGG | - | chr5_4:1974847-1974866 | None:intergenic | 20.0% |
| !! | AATTGATAATTGAGAAACGT+TGG | - | chr5_4:1971785-1971804 | None:intergenic | 25.0% |
| !!! | GATAGTCATTTTCAATTTAG+GGG | + | chr5_4:1972406-1972425 | Msa0829000:intron | 25.0% |
| !!! | ATAGTCATTTTCAATTTAGG+GGG | + | chr5_4:1972407-1972426 | Msa0829000:intron | 25.0% |
| !! | CTTTTCTTGAAGAAATGAAA+AGG | - | chr5_4:1972502-1972521 | None:intergenic | 25.0% |
| ! | TCTTGAGAGCAAAAAAATTA+AGG | + | chr5_4:1972700-1972719 | Msa0829000:intron | 25.0% |
| ! | ATTACCACTTTCTTAGATAA+TGG | + | chr5_4:1973284-1973303 | Msa0829000:intron | 25.0% |
| ! | ACAGAAAAATGCAATAATGT+TGG | + | chr5_4:1973970-1973989 | Msa0829000:intron | 25.0% |
| !!! | GTACATATTTTTTGCTGATA+AGG | + | chr5_4:1974179-1974198 | Msa0829000:CDS | 25.0% |
| !!! | ATATTACTGACTTTTGCTTT+TGG | + | chr5_4:1974662-1974681 | Msa0829000:intron | 25.0% |
| !! | AACATTTTCCTATTATCCTA+TGG | + | chr5_4:1974698-1974717 | Msa0829000:intron | 25.0% |
| ! | AAAGGAAAGATGAAAATACT+TGG | - | chr5_4:1974806-1974825 | None:intergenic | 25.0% |
| !! | AGTATTTTCATCTTTCCTTT+TGG | + | chr5_4:1974806-1974825 | Msa0829000:intron | 25.0% |
| !! | TCTTTAAGCTTTTTACCAAA+AGG | - | chr5_4:1974824-1974843 | None:intergenic | 25.0% |
| ! | TGTCATTTCGATTAGGTTAT+TGG | - | chr5_4:1971551-1971570 | None:intergenic | 30.0% |
| GATCAACTAGCATAAGAAAA+TGG | - | chr5_4:1971832-1971851 | None:intergenic | 30.0% | |
| ATAAGTAGATTGTACTTGGA+TGG | + | chr5_4:1971872-1971891 | Msa0829000:intron | 30.0% | |
| TAATCCCTGTCAATGAAAAT+AGG | - | chr5_4:1972168-1972187 | None:intergenic | 30.0% | |
| AGGCATCATAATCATATACA+AGG | + | chr5_4:1972351-1972370 | Msa0829000:intron | 30.0% | |
| CTATCATGTATAAGAACCAT+AGG | - | chr5_4:1972391-1972410 | None:intergenic | 30.0% | |
| ACTCATACTATAAGCACATA+CGG | - | chr5_4:1972466-1972485 | None:intergenic | 30.0% | |
| TCAAATTAATCCTTGTACTG+GGG | - | chr5_4:1972536-1972555 | None:intergenic | 30.0% | |
| CTCAAATTAATCCTTGTACT+GGG | - | chr5_4:1972537-1972556 | None:intergenic | 30.0% | |
| ACTCAAATTAATCCTTGTAC+TGG | - | chr5_4:1972538-1972557 | None:intergenic | 30.0% | |
| GCTCTCAAGAAATATCATTT+GGG | - | chr5_4:1972690-1972709 | None:intergenic | 30.0% | |
| TGCTCTCAAGAAATATCATT+TGG | - | chr5_4:1972691-1972710 | None:intergenic | 30.0% | |
| ATTATTACCTTTACTGTTGC+AGG | + | chr5_4:1972751-1972770 | Msa0829000:intron | 30.0% | |
| ! | ACTAGCTTACATGACTTTAA+TGG | + | chr5_4:1973112-1973131 | Msa0829000:intron | 30.0% |
| CTAGCTTACATGACTTTAAT+GGG | + | chr5_4:1973113-1973132 | Msa0829000:intron | 30.0% | |
| TAGAACTTCAACACTGTATT+AGG | - | chr5_4:1973229-1973248 | None:intergenic | 30.0% | |
| GCATGTTTAGATACTTATCT+AGG | + | chr5_4:1973258-1973277 | Msa0829000:intron | 30.0% | |
| GAATCCATTATCTAAGAAAG+TGG | - | chr5_4:1973291-1973310 | None:intergenic | 30.0% | |
| TCTGTGCAATCTAATAACAT+AGG | + | chr5_4:1973333-1973352 | Msa0829000:intron | 30.0% | |
| CAATCTAATAACATAGGTTG+TGG | + | chr5_4:1973339-1973358 | Msa0829000:intron | 30.0% | |
| !! | AAATGAAAGTACCTCTTATC+CGG | - | chr5_4:1973381-1973400 | None:intergenic | 30.0% |
| ATAACTTGAAATACAGTCAG+TGG | + | chr5_4:1973576-1973595 | Msa0829000:intron | 30.0% | |
| GAAAAATGCAATAATGTTGG+TGG | + | chr5_4:1973973-1973992 | Msa0829000:intron | 30.0% | |
| TACTTACTTGTTCAGCATTT+CGG | - | chr5_4:1974026-1974045 | None:intergenic | 30.0% | |
| !!! | TATCTTACTTGGCTACTTTT+GGG | - | chr5_4:1974255-1974274 | None:intergenic | 30.0% |
| ! | CTGTGATAATGTATCTTACT+TGG | - | chr5_4:1974266-1974285 | None:intergenic | 30.0% |
| ATAATTACATGAACAGGTGA+TGG | + | chr5_4:1974325-1974344 | Msa0829000:intron | 30.0% | |
| GATCTTATTGGAAAACCATA+CGG | + | chr5_4:1974365-1974384 | Msa0829000:CDS | 30.0% | |
| ACTTAAATATACACAGCTTC+TGG | + | chr5_4:1974756-1974775 | Msa0829000:intron | 30.0% | |
| TTTCCAACTCCTATAGTTAT+AGG | - | chr5_4:1974922-1974941 | None:intergenic | 30.0% | |
| GTTGGAAATATCATTTCTGA+AGG | + | chr5_4:1974934-1974953 | Msa0829000:CDS | 30.0% | |
| !!! | TTTTTCATTGATGATGTCTC+CGG | + | chr5_4:1974960-1974979 | Msa0829000:CDS | 30.0% |
| !! | TATTGGCTTATTGCTAACAG+AGG | - | chr5_4:1971534-1971553 | None:intergenic | 35.0% |
| ! | ACAGTGTTGTCATTTCGATT+AGG | - | chr5_4:1971558-1971577 | None:intergenic | 35.0% |
| AACACTTGAGGTCAATTACT+TGG | - | chr5_4:1972101-1972120 | None:intergenic | 35.0% | |
| ACCTCAAGTGTTAATGAATC+CGG | + | chr5_4:1972109-1972128 | Msa0829000:intron | 35.0% | |
| !! | AAGTTCTGAATCCTATCTCA+CGG | - | chr5_4:1972277-1972296 | None:intergenic | 35.0% |
| TGTATAAGAACCATAGGTGT+AGG | - | chr5_4:1972385-1972404 | None:intergenic | 35.0% | |
| GAAAAAATTACCCCAGTACA+AGG | + | chr5_4:1972523-1972542 | Msa0829000:intron | 35.0% | |
| TTTGCACGAACATCTTCATT+TGG | + | chr5_4:1972934-1972953 | Msa0829000:intron | 35.0% | |
| !! | TTACATGACTTTAATGGGCT+TGG | + | chr5_4:1973118-1973137 | Msa0829000:intron | 35.0% |
| !! | TACATGACTTTAATGGGCTT+GGG | + | chr5_4:1973119-1973138 | Msa0829000:intron | 35.0% |
| ATAAGAGCAATGCATTCACA+AGG | + | chr5_4:1973422-1973441 | Msa0829000:intron | 35.0% | |
| TCCATACAGTGTAAGCAATT+GGG | + | chr5_4:1973497-1973516 | Msa0829000:intron | 35.0% | |
| ATCTCTAACTGAAATCCCTA+GGG | + | chr5_4:1973778-1973797 | Msa0829000:intron | 35.0% | |
| ATATCTATAGTTCGAGCTGT+TGG | - | chr5_4:1973826-1973845 | None:intergenic | 35.0% | |
| ! | GCAAACGAGCTTATTTGTTT+TGG | + | chr5_4:1974224-1974243 | Msa0829000:CDS | 35.0% |
| !! | GTATCTTACTTGGCTACTTT+TGG | - | chr5_4:1974256-1974275 | None:intergenic | 35.0% |
| TTGAACGTAGGTGATCTTAT+TGG | + | chr5_4:1974353-1974372 | Msa0829000:CDS | 35.0% | |
| TTATGTAAGCTTCACCTTAC+TGG | + | chr5_4:1974403-1974422 | Msa0829000:intron | 35.0% | |
| TCTCTCGTACAAGATATATC+TGG | + | chr5_4:1974476-1974495 | Msa0829000:intron | 35.0% | |
| GATACTTCCCTAAGTAAGAA+AGG | + | chr5_4:1974629-1974648 | Msa0829000:intron | 35.0% | |
| ATCCATGCCTTTCTTACTTA+GGG | - | chr5_4:1974639-1974658 | None:intergenic | 35.0% | |
| TATCCATGCCTTTCTTACTT+AGG | - | chr5_4:1974640-1974659 | None:intergenic | 35.0% | |
| TATGTAAAAGAGGTAGCCAT+AGG | - | chr5_4:1974717-1974736 | None:intergenic | 35.0% | |
| GATAAGCAGCCTATAACTAT+AGG | + | chr5_4:1974910-1974929 | Msa0829000:CDS | 35.0% | |
| ! | GGAAATATCATTTCTGAAGG+TGG | + | chr5_4:1974937-1974956 | Msa0829000:CDS | 35.0% |
| CTTCGAAGGTTGAAGTAAGA+TGG | - | chr5_4:1971586-1971605 | None:intergenic | 40.0% | |
| AATAGTGAAGATGGAGACCA+TGG | - | chr5_4:1971613-1971632 | None:intergenic | 40.0% | |
| GGTTTGAGGAATAGTGAAGA+TGG | - | chr5_4:1971622-1971641 | None:intergenic | 40.0% | |
| TTGGGAGTAAACAAGGTTTG+AGG | - | chr5_4:1971636-1971655 | None:intergenic | 40.0% | |
| TCTTGTTCTTCTTGTTGCGT+TGG | - | chr5_4:1971678-1971697 | None:intergenic | 40.0% | |
| TGGAAATTACCAAGAAGTCG+TGG | - | chr5_4:1971765-1971784 | None:intergenic | 40.0% | |
| TCCGGATTCATTAACACTTG+AGG | - | chr5_4:1972113-1972132 | None:intergenic | 40.0% | |
| CCCTGTCAATGAAAATAGGA+GGG | - | chr5_4:1972164-1972183 | None:intergenic | 40.0% | |
| ! | CCCTCCTATTTTCATTGACA+GGG | + | chr5_4:1972161-1972180 | Msa0829000:intron | 40.0% |
| TCCCTGTCAATGAAAATAGG+AGG | - | chr5_4:1972165-1972184 | None:intergenic | 40.0% | |
| TACTAAAATGGCCGTGAGAT+AGG | + | chr5_4:1972263-1972282 | Msa0829000:intron | 40.0% | |
| ! | TCATAACGATGAAGAAGCAC+TGG | + | chr5_4:1972829-1972848 | Msa0829000:CDS | 40.0% |
| GAGAACATGCATTTAGCTAC+AGG | - | chr5_4:1972908-1972927 | None:intergenic | 40.0% | |
| GTTGTGGATCTTTCACACTT+CGG | + | chr5_4:1973355-1973374 | Msa0829000:CDS | 40.0% | |
| TGCATTGCTCTTATGTGGAA+AGG | - | chr5_4:1973416-1973435 | None:intergenic | 40.0% | |
| GTGAATGCATTGCTCTTATG+TGG | - | chr5_4:1973421-1973440 | None:intergenic | 40.0% | |
| GTCCATACAGTGTAAGCAAT+TGG | + | chr5_4:1973496-1973515 | Msa0829000:intron | 40.0% | |
| TCCCAATTGCTTACACTGTA+TGG | - | chr5_4:1973501-1973520 | None:intergenic | 40.0% | |
| !! | CAGAGTACTGCAAACTTTGA+GGG | + | chr5_4:1973627-1973646 | Msa0829000:CDS | 40.0% |
| GATCTCTAACTGAAATCCCT+AGG | + | chr5_4:1973777-1973796 | Msa0829000:intron | 40.0% | |
| AAAACAGTGTCACATCCCTA+GGG | - | chr5_4:1973796-1973815 | None:intergenic | 40.0% | |
| AAAAACAGTGTCACATCCCT+AGG | - | chr5_4:1973797-1973816 | None:intergenic | 40.0% | |
| CTATAGATATTGCACATGCG+TGG | + | chr5_4:1973836-1973855 | Msa0829000:CDS | 40.0% | |
| CTTGTTCAGCATTTCGGTAA+TGG | - | chr5_4:1974020-1974039 | None:intergenic | 40.0% | |
| TTACTGTTAGGATTCTCCGA+CGG | + | chr5_4:1974057-1974076 | Msa0829000:intron | 40.0% | |
| ! | ATTTTCGGTTTAACCTCCGT+CGG | - | chr5_4:1974076-1974095 | None:intergenic | 40.0% |
| !!! | ACGAGCTTATTTGTTTTGGC+AGG | + | chr5_4:1974228-1974247 | Msa0829000:CDS | 40.0% |
| AGTTGTGAGAATGACAGAGT+CGG | + | chr5_4:1974291-1974310 | Msa0829000:intron | 40.0% | |
| ! | AAATGTTGATGAGTGCCGTA+TGG | - | chr5_4:1974383-1974402 | None:intergenic | 40.0% |
| ATGACACGATTGAGCATGTA+AGG | - | chr5_4:1974574-1974593 | None:intergenic | 40.0% | |
| TTCCCTAAGTAAGAAAGGCA+TGG | + | chr5_4:1974634-1974653 | Msa0829000:intron | 40.0% | |
| !! | TTTGCTTTTGGCAACGCTTT+TGG | + | chr5_4:1974674-1974693 | Msa0829000:intron | 40.0% |
| AGAGGTAGCCATAGGATAAT+AGG | - | chr5_4:1974709-1974728 | None:intergenic | 40.0% | |
| CAGCCTATAACTATAGGAGT+TGG | + | chr5_4:1974916-1974935 | Msa0829000:CDS | 40.0% | |
| AGAATAGCTTTCCAGACAGA+TGG | - | chr5_4:1974994-1975013 | None:intergenic | 40.0% | |
| TGGAAAGCTATTCTTGCTCA+AGG | + | chr5_4:1975000-1975019 | Msa0829000:CDS | 40.0% | |
| GGAAAGCTATTCTTGCTCAA+GGG | + | chr5_4:1975001-1975020 | Msa0829000:CDS | 40.0% | |
| GAAAGCTATTCTTGCTCAAG+GGG | + | chr5_4:1975002-1975021 | Msa0829000:CDS | 40.0% | |
| ! | TTGCAATGGGTTCTAATGCT+TGG | + | chr5_4:1975028-1975047 | Msa0829000:CDS | 40.0% |
| CTGAGGTTTGGGAGTAAACA+AGG | - | chr5_4:1971643-1971662 | None:intergenic | 45.0% | |
| ! | GTGAGCAGAATCTGAGGTTT+GGG | - | chr5_4:1971654-1971673 | None:intergenic | 45.0% |
| ! | TGTGAGCAGAATCTGAGGTT+TGG | - | chr5_4:1971655-1971674 | None:intergenic | 45.0% |
| ! | GCCCTCCTATTTTCATTGAC+AGG | + | chr5_4:1972160-1972179 | Msa0829000:intron | 45.0% |
| !! | CCATTTTAGTAGCTGAGGTG+GGG | - | chr5_4:1972254-1972273 | None:intergenic | 45.0% |
| !! | GCCATTTTAGTAGCTGAGGT+GGG | - | chr5_4:1972255-1972274 | None:intergenic | 45.0% |
| ATTATGATGCCTACGAGTCG+AGG | - | chr5_4:1972343-1972362 | None:intergenic | 45.0% | |
| ACAGTGTCCTGCAACAGTAA+AGG | - | chr5_4:1972761-1972780 | None:intergenic | 45.0% | |
| TACAACAACCCCATTGTCTG+CGG | - | chr5_4:1972858-1972877 | None:intergenic | 45.0% | |
| GCTTGGGATGATATTAGCTC+AGG | + | chr5_4:1973135-1973154 | Msa0829000:intron | 45.0% | |
| TTGCAGTACTCTGGTTGTGA+AGG | - | chr5_4:1973620-1973639 | None:intergenic | 45.0% | |
| CCTCAAAGTTTGCAGTACTC+TGG | - | chr5_4:1973629-1973648 | None:intergenic | 45.0% | |
| !! | CCAGAGTACTGCAAACTTTG+AGG | + | chr5_4:1973626-1973645 | Msa0829000:CDS | 45.0% |
| ! | TGCAAACTTTGAGGGTCTAC+AGG | + | chr5_4:1973635-1973654 | Msa0829000:CDS | 45.0% |
| TATTGCACATGCGTGGATCA+TGG | + | chr5_4:1973843-1973862 | Msa0829000:CDS | 45.0% | |
| TGGTTTCAGCAGAGACTTGT+AGG | + | chr5_4:1973993-1974012 | Msa0829000:CDS | 45.0% | |
| ! | GTGATGGAAAGCTTGAACGT+AGG | + | chr5_4:1974341-1974360 | Msa0829000:CDS | 45.0% |
| !!! | TATTTAAATTTAAAAGTTTT+GGG | - | chr5_4:1973456-1973475 | None:intergenic | 5.0% |
| !!! | ATATTTAAATTTAAAAGTTT+TGG | - | chr5_4:1973457-1973476 | None:intergenic | 5.0% |
| TCAACCTTCGAAGCCAACCA+TGG | + | chr5_4:1971593-1971612 | Msa0829000:CDS | 50.0% | |
| GTGAAGATGGAGACCATGGT+TGG | - | chr5_4:1971609-1971628 | None:intergenic | 50.0% | |
| GTTGGTGTGAGCAGAATCTG+AGG | - | chr5_4:1971660-1971679 | None:intergenic | 50.0% | |
| ACCAAGAAGTCGTGGTCGAT+GGG | - | chr5_4:1971757-1971776 | None:intergenic | 50.0% | |
| TACCAAGAAGTCGTGGTCGA+TGG | - | chr5_4:1971758-1971777 | None:intergenic | 50.0% | |
| ! | TTTTAGTAGCTGAGGTGGGG+AGG | - | chr5_4:1972251-1972270 | None:intergenic | 50.0% |
| CCCCACCTCAGCTACTAAAA+TGG | + | chr5_4:1972251-1972270 | Msa0829000:intron | 50.0% | |
| !! | GGCCATTTTAGTAGCTGAGG+TGG | - | chr5_4:1972256-1972275 | None:intergenic | 50.0% |
| !! | CACGGCCATTTTAGTAGCTG+AGG | - | chr5_4:1972259-1972278 | None:intergenic | 50.0% |
| ! | TCATAAGCTCCTCGACTCGT+AGG | + | chr5_4:1972331-1972350 | Msa0829000:intron | 50.0% |
| GGATCGAGAACCTACACCTA+TGG | + | chr5_4:1972372-1972391 | Msa0829000:intron | 50.0% | |
| CAGGACACTGTCAAAACTGC+AGG | + | chr5_4:1972770-1972789 | Msa0829000:intron | 50.0% | |
| TGGATCTTTCACACTTCGGC+CGG | + | chr5_4:1973359-1973378 | Msa0829000:CDS | 50.0% | |
| ! | AACTTTGAGGGTCTACAGGC+AGG | + | chr5_4:1973639-1973658 | Msa0829000:CDS | 50.0% |
| ! | ACTTTGAGGGTCTACAGGCA+GGG | + | chr5_4:1973640-1973659 | Msa0829000:CDS | 50.0% |
| !! | GAGACCATGGTTGGCTTCGA+AGG | - | chr5_4:1971600-1971619 | None:intergenic | 55.0% |
| AAGAAGTCGTGGTCGATGGG+TGG | - | chr5_4:1971754-1971773 | None:intergenic | 55.0% | |
| ACCCATCGACCACGACTTCT+TGG | + | chr5_4:1971753-1971772 | Msa0829000:CDS | 55.0% | |
| ! | TGTCAAAACTGCAGGTGCCG+AGG | + | chr5_4:1972778-1972797 | Msa0829000:CDS | 55.0% |
| GATCCCTTCCCCAGAAACCT+CGG | - | chr5_4:1972798-1972817 | None:intergenic | 55.0% | |
| CACTGGATGCCGCAGACAAT+GGG | + | chr5_4:1972846-1972865 | Msa0829000:CDS | 55.0% | |
| ACTGGATGCCGCAGACAATG+GGG | + | chr5_4:1972847-1972866 | Msa0829000:CDS | 55.0% | |
| TCACACTTCGGCCGGATAAG+AGG | + | chr5_4:1973367-1973386 | Msa0829000:CDS | 55.0% | |
| CTACAGGCAGGGCAAGTATG+TGG | + | chr5_4:1973651-1973670 | Msa0829000:intron | 55.0% | |
| CTGTTAGGATTCTCCGACGG+AGG | + | chr5_4:1974060-1974079 | Msa0829000:intron | 55.0% | |
| TGCTCAAGGGGCTGTTGCAA+TGG | + | chr5_4:1975014-1975033 | Msa0829000:CDS | 55.0% | |
| GCTCAAGGGGCTGTTGCAAT+GGG | + | chr5_4:1975015-1975034 | Msa0829000:CDS | 55.0% | |
| AGTCGTGGTCGATGGGTGGA+GGG | - | chr5_4:1971750-1971769 | None:intergenic | 60.0% | |
| AAGTCGTGGTCGATGGGTGG+AGG | - | chr5_4:1971751-1971770 | None:intergenic | 60.0% | |
| !! | ACTGCAGGTGCCGAGGTTTC+TGG | + | chr5_4:1972785-1972804 | Msa0829000:CDS | 60.0% |
| !! | CTGCAGGTGCCGAGGTTTCT+GGG | + | chr5_4:1972786-1972805 | Msa0829000:CDS | 60.0% |
| !! | TGCAGGTGCCGAGGTTTCTG+GGG | + | chr5_4:1972787-1972806 | Msa0829000:CDS | 60.0% |
| ! | GTGCCGAGGTTTCTGGGGAA+GGG | + | chr5_4:1972792-1972811 | Msa0829000:CDS | 60.0% |
| GCACTGGATGCCGCAGACAA+TGG | + | chr5_4:1972845-1972864 | Msa0829000:CDS | 60.0% | |
| CAGACAGATGGAGCAGCTGC+CGG | - | chr5_4:1974982-1975001 | None:intergenic | 60.0% | |
| GGTCGATGGGTGGAGGGGAA+AGG | - | chr5_4:1971744-1971763 | None:intergenic | 65.0% | |
| GTCGTGGTCGATGGGTGGAG+GGG | - | chr5_4:1971749-1971768 | None:intergenic | 65.0% | |
| ! | GGTGCCGAGGTTTCTGGGGA+AGG | + | chr5_4:1972791-1972810 | Msa0829000:CDS | 65.0% |
| CGGCAGCTGCTCCATCTGTC+TGG | + | chr5_4:1974980-1974999 | Msa0829000:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 1971525 | 1975071 | 1971525 | ID=Msa0829000;Name=Msa0829000 |
| chr5_4 | mRNA | 1971525 | 1975071 | 1971525 | ID=Msa0829000-mRNA-1;Parent=Msa0829000;Name=Msa0829000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=40|1|0.88|1|1|1|9|0|290 |
| chr5_4 | exon | 1971525 | 1971774 | 1971525 | ID=Msa0829000-mRNA-1:exon:559;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1972773 | 1972874 | 1972773 | ID=Msa0829000-mRNA-1:exon:560;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1973355 | 1973388 | 1973355 | ID=Msa0829000-mRNA-1:exon:561;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1973592 | 1973665 | 1973592 | ID=Msa0829000-mRNA-1:exon:562;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1973799 | 1973864 | 1973799 | ID=Msa0829000-mRNA-1:exon:563;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1973974 | 1974038 | 1973974 | ID=Msa0829000-mRNA-1:exon:564;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1974179 | 1974266 | 1974179 | ID=Msa0829000-mRNA-1:exon:565;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1974341 | 1974406 | 1974341 | ID=Msa0829000-mRNA-1:exon:566;Parent=Msa0829000-mRNA-1 |
| chr5_4 | exon | 1974907 | 1975071 | 1974907 | ID=Msa0829000-mRNA-1:exon:567;Parent=Msa0829000-mRNA-1 |
| chr5_4 | five_prime_UTR | 1971525 | 1971564 | 1971525 | ID=Msa0829000-mRNA-1:five_prime_utr;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1971565 | 1971774 | 1971565 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1972773 | 1972874 | 1972773 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1973355 | 1973388 | 1973355 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1973592 | 1973665 | 1973592 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1973799 | 1973864 | 1973799 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1973974 | 1974038 | 1973974 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1974179 | 1974266 | 1974179 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1974341 | 1974406 | 1974341 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| chr5_4 | CDS | 1974907 | 1975071 | 1974907 | ID=Msa0829000-mRNA-1:cds;Parent=Msa0829000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
