AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438270 MtrunA17_Chr8g0380691 96.682 422 14 0 1 422 1 422 0.0 845
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438270 AT1G60990.3 67.892 408 120 2 24 422 27 432 0.0 574
Msa1438270 AT1G60990.2 67.892 408 120 2 24 422 27 432 0.0 574
Msa1438270 AT1G60990.1 67.892 408 120 2 24 422 27 432 0.0 574
Msa1438270 AT1G11860.2 25.444 338 231 11 93 413 70 403 3.58e-12 68.2
Msa1438270 AT1G11860.1 25.444 338 231 11 93 413 70 403 3.58e-12 68.2
Msa1438270 AT1G11860.3 25.444 338 231 11 93 413 85 418 3.67e-12 68.2

Find 117 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCTTACTTGGCTACTTT+TGG 0.165355 tig0028533:+12113 None:intergenic
ACTGCAGGTGCCGAGGTTTC+TGG 0.175027 tig0028533:-13580 Msa1438270:CDS
TTTCCAACTCCTATAGTTAT+AGG 0.205103 tig0028533:+11447 None:intergenic
TGTCATTTCGATTAGGTTAT+TGG 0.218981 tig0028533:+14817 None:intergenic
ACCCATCGACCACGACTTCT+TGG 0.283454 tig0028533:-14612 Msa1438270:intron
TGTTGACATCATCATTATTA+TGG 0.291745 tig0028533:-8884 Msa1438270:three_prime_UTR
TACTTACTTGTTCAGCATTT+CGG 0.314008 tig0028533:+12343 None:intergenic
GCAAACGAGCTTATTTGTTT+TGG 0.315922 tig0028533:-12142 Msa1438270:CDS
CCATCGGAACACTTCGGATT+AGG 0.320328 tig0028533:-9049 Msa1438270:CDS
ACGTCCTGGAGGCCTGTCTA+TGG 0.323499 tig0028533:-9742 Msa1438270:CDS
CACTGGATGCCGCAGACAAT+GGG 0.348039 tig0028533:-13519 Msa1438270:CDS
TTGAACGTAGGTGATCTTAT+TGG 0.350341 tig0028533:-12013 Msa1438270:CDS
CTGCAGGTGCCGAGGTTTCT+GGG 0.353745 tig0028533:-13579 Msa1438270:CDS
ATGGAGTCAAACAGAGGTTA+TGG 0.353861 tig0028533:-9568 Msa1438270:CDS
TGCTCAAGGGGCTGTTGCAA+TGG 0.369762 tig0028533:-11352 Msa1438270:CDS
CTTGTTCAGCATTTCGGTAA+TGG 0.379644 tig0028533:+12349 None:intergenic
GCTCAAGGGGCTGTTGCAAT+GGG 0.395855 tig0028533:-11351 Msa1438270:CDS
TGGTTTCAGCAGAGACTTGT+AGG 0.401443 tig0028533:-12373 Msa1438270:CDS
ACATCAAATTTAGAACAATA+AGG 0.403007 tig0028533:+14858 None:intergenic
TCGTTTGTGAGCTCCATTCC+AGG 0.405499 tig0028533:+9770 None:intergenic
CGGCAGCTGCTCCATCTGTC+TGG 0.407182 tig0028533:-11386 Msa1438270:CDS
CCAGAGTACTGCAAACTTTG+AGG 0.413393 tig0028533:-12741 Msa1438270:CDS
ACAGTGTTGTCATTTCGATT+AGG 0.418788 tig0028533:+14810 None:intergenic
AACTTTGAGGGTCTACAGGC+AGG 0.423954 tig0028533:-12728 Msa1438270:CDS
ATTGTTGGAGACAACATCAT+TGG 0.427946 tig0028533:-8986 Msa1438270:CDS
TCACACTTCGGCCGGATAAG+AGG 0.440438 tig0028533:-13000 Msa1438270:intron
GATAAGCAGCCTATAACTAT+AGG 0.445173 tig0028533:-11456 Msa1438270:CDS
GGTGCCGAGGTTTCTGGGGA+AGG 0.446680 tig0028533:-13574 Msa1438270:CDS
CTCAGGTTGTTACAAAGGAC+AGG 0.451833 tig0028533:-9618 Msa1438270:intron
TCTCAACAGCGTCTGCCATC+TGG 0.453158 tig0028533:-8938 Msa1438270:CDS
TGCAAACTTTGAGGGTCTAC+AGG 0.456706 tig0028533:-12732 Msa1438270:CDS
TTCTCAGGAAGGCCTGCTCC+TGG 0.456760 tig0028533:-9788 Msa1438270:intron
TGGAGTCAAACAGAGGTTAT+GGG 0.459832 tig0028533:-9567 Msa1438270:CDS
GTGAGCTCCATTCCAGGAGC+AGG 0.460015 tig0028533:+9776 None:intergenic
CTGAGGTTTGGGAGTAAACA+AGG 0.460947 tig0028533:+14725 None:intergenic
CAGAGTACTGCAAACTTTGA+GGG 0.462222 tig0028533:-12740 Msa1438270:CDS
GCACTGGATGCCGCAGACAA+TGG 0.467510 tig0028533:-13520 Msa1438270:CDS
GAAGGAGACAGTGTAATTGT+TGG 0.468448 tig0028533:-9001 Msa1438270:CDS
AAGTCGTGGTCGATGGGTGG+AGG 0.470425 tig0028533:+14617 None:intergenic
TGTGAGCAGAATCTGAGGTT+TGG 0.470983 tig0028533:+14713 None:intergenic
AAATGAAAGTACCTCTTATC+CGG 0.476064 tig0028533:+12989 None:intergenic
GGTCGATGGGTGGAGGGGAA+AGG 0.476226 tig0028533:+14624 None:intergenic
GTGAGCAGAATCTGAGGTTT+GGG 0.480461 tig0028533:+14714 None:intergenic
TTGCAATGGGTTCTAATGCT+TGG 0.480918 tig0028533:-11338 Msa1438270:CDS
TACATGGCACATAAGTTTAA+CGG 0.481205 tig0028533:+8746 None:intergenic
CTTTCTGCAGCCGCAGAACC+TGG 0.482443 tig0028533:-9536 Msa1438270:CDS
TCTTGTTCTTCTTGTTGCGT+TGG 0.487003 tig0028533:+14690 None:intergenic
AGAAATTGAGTTCCATAGAC+AGG 0.487933 tig0028533:+9730 None:intergenic
GGTTTGAGGAATAGTGAAGA+TGG 0.488115 tig0028533:+14746 None:intergenic
CCTCAAAGTTTGCAGTACTC+TGG 0.489181 tig0028533:+12741 None:intergenic
CTTCGAAGGTTGAAGTAAGA+TGG 0.490320 tig0028533:+14782 None:intergenic
GCCAGGCTCATAACATATGA+TGG 0.495682 tig0028533:-9587 Msa1438270:CDS
AGGAAGGCCTGCTCCTGGAA+TGG 0.496441 tig0028533:-9783 Msa1438270:CDS
ATTATTATGGTCAAGTATGA+TGG 0.501347 tig0028533:-8871 Msa1438270:three_prime_UTR
CAGCCTATAACTATAGGAGT+TGG 0.503689 tig0028533:-11450 Msa1438270:CDS
GGAAATATCATTTCTGAAGG+TGG 0.508021 tig0028533:-11429 Msa1438270:CDS
GTGCCGAGGTTTCTGGGGAA+GGG 0.511609 tig0028533:-13573 Msa1438270:CDS
TACCAAGAAGTCGTGGTCGA+TGG 0.513887 tig0028533:+14610 None:intergenic
AGTTCCATAGACAGGCCTCC+AGG 0.514728 tig0028533:+9738 None:intergenic
TCCATCATATGTTATGAGCC+TGG 0.520694 tig0028533:+9586 None:intergenic
TATTGCACATGCGTGGATCA+TGG 0.521802 tig0028533:-12524 Msa1438270:intron
AGTCGTGGTCGATGGGTGGA+GGG 0.521890 tig0028533:+14618 None:intergenic
CACAAACGAATTCAACGTCC+TGG 0.523539 tig0028533:-9756 Msa1438270:CDS
TGGATCTTTCACACTTCGGC+CGG 0.524782 tig0028533:-13008 Msa1438270:CDS
ACCAAGAAGTCGTGGTCGAT+GGG 0.525840 tig0028533:+14611 None:intergenic
TTGGGAGTAAACAAGGTTTG+AGG 0.530532 tig0028533:+14732 None:intergenic
GAGACCATGGTTGGCTTCGA+AGG 0.530681 tig0028533:+14768 None:intergenic
GGTAGTATTATCACTGTGGA+TGG 0.539084 tig0028533:-9515 Msa1438270:CDS
CAGACAGATGGAGCAGCTGC+CGG 0.543197 tig0028533:+11387 None:intergenic
AGAATAGCTTTCCAGACAGA+TGG 0.545861 tig0028533:+11375 None:intergenic
GTCGTGGTCGATGGGTGGAG+GGG 0.550885 tig0028533:+14619 None:intergenic
ATATCTATAGTTCGAGCTGT+TGG 0.554752 tig0028533:+12544 None:intergenic
CAGGACACTGTCAAAACTGC+AGG 0.559001 tig0028533:-13595 Msa1438270:CDS
TGGAAAGCTATTCTTGCTCA+AGG 0.559551 tig0028533:-11366 Msa1438270:CDS
TCGGATTAGGTTACATCAAG+AGG 0.561096 tig0028533:-9036 Msa1438270:CDS
TCATAACGATGAAGAAGCAC+TGG 0.561241 tig0028533:-13536 Msa1438270:CDS
GTTGGAAATATCATTTCTGA+AGG 0.563837 tig0028533:-11432 Msa1438270:CDS
GAACTCAATTTCTCTAAACA+AGG 0.564868 tig0028533:-9720 Msa1438270:CDS
GAAAGCTATTCTTGCTCAAG+GGG 0.565925 tig0028533:-11364 Msa1438270:CDS
GTTGTGGATCTTTCACACTT+CGG 0.568328 tig0028533:-13012 Msa1438270:CDS
AAATTGACTAGTTACACCTC+TGG 0.573087 tig0028533:-9079 Msa1438270:CDS
TTCCGATGGCTTCCTTCCAG+AGG 0.575249 tig0028533:+9063 None:intergenic
AAGAGGCAAGCTGCTTCAGA+AGG 0.575817 tig0028533:-9019 Msa1438270:CDS
GGAAAGCTATTCTTGCTCAA+GGG 0.577897 tig0028533:-11365 Msa1438270:CDS
AGACGCTGTTGAGAAAGAAA+AGG 0.578518 tig0028533:+8947 None:intergenic
TTGCAGTACTCTGGTTGTGA+AGG 0.585064 tig0028533:+12750 None:intergenic
TGCAGGTGCCGAGGTTTCTG+GGG 0.597176 tig0028533:-13578 Msa1438270:CDS
GTGATGGAAAGCTTGAACGT+AGG 0.598517 tig0028533:-12025 Msa1438270:CDS
GGAGTCAAACAGAGGTTATG+GGG 0.600336 tig0028533:-9566 Msa1438270:CDS
GATAATACTACCAGGTTCTG+CGG 0.603697 tig0028533:+9526 None:intergenic
GATCCCTTCCCCAGAAACCT+CGG 0.605258 tig0028533:+13570 None:intergenic
GATCTTATTGGAAAACCATA+CGG 0.606440 tig0028533:-12001 Msa1438270:CDS
CCTAATCCGAAGTGTTCCGA+TGG 0.607681 tig0028533:+9049 None:intergenic
AATAAGTTGCGAGTTATCCA+AGG 0.609619 tig0028533:-11315 Msa1438270:intron
AAGAAGTCGTGGTCGATGGG+TGG 0.610174 tig0028533:+14614 None:intergenic
ACTTTGAGGGTCTACAGGCA+GGG 0.610437 tig0028533:-12727 Msa1438270:CDS
TGACTAGTTACACCTCTGGA+AGG 0.612902 tig0028533:-9075 Msa1438270:CDS
AGGAAGCCATCGGAACACTT+CGG 0.620483 tig0028533:-9055 Msa1438270:CDS
CTATAGATATTGCACATGCG+TGG 0.626627 tig0028533:-12531 Msa1438270:CDS
TGTCAAAACTGCAGGTGCCG+AGG 0.627788 tig0028533:-13587 Msa1438270:CDS
AAATGTTGATGAGTGCCGTA+TGG 0.628277 tig0028533:+11986 None:intergenic
TACAACAACCCCATTGTCTG+CGG 0.628493 tig0028533:+13510 None:intergenic
TATTGGCTTATTGCTAACAG+AGG 0.630705 tig0028533:+14834 None:intergenic
AAGAACAACATGATACTACA+TGG 0.631653 tig0028533:+8730 None:intergenic
AATAGTGAAGATGGAGACCA+TGG 0.638511 tig0028533:+14755 None:intergenic
GTGAAGATGGAGACCATGGT+TGG 0.640860 tig0028533:+14759 None:intergenic
AAGGACAGGAGACTATAGCC+AGG 0.644196 tig0028533:-9604 Msa1438270:CDS
TCAACCTTCGAAGCCAACCA+TGG 0.648406 tig0028533:-14772 Msa1438270:CDS
AACTCAATTTCTCTAAACAA+GGG 0.653020 tig0028533:-9719 Msa1438270:intron
CACCTCTGGAAGGAAGCCAT+CGG 0.660284 tig0028533:-9065 Msa1438270:CDS
GTTGGTGTGAGCAGAATCTG+AGG 0.669720 tig0028533:+14708 None:intergenic
TCCACAGTGATAATACTACC+AGG 0.673931 tig0028533:+9518 None:intergenic
TGGAAATTACCAAGAAGTCG+TGG 0.686676 tig0028533:+14603 None:intergenic
ACCTGGTAGTATTATCACTG+TGG 0.707528 tig0028533:-9519 Msa1438270:CDS
CATATGATGGAGTCAAACAG+AGG 0.709677 tig0028533:-9574 Msa1438270:CDS
ACTGGATGCCGCAGACAATG+GGG 0.712791 tig0028533:-13518 Msa1438270:CDS
AAACGAATTCAACGTCCTGG+AGG 0.732724 tig0028533:-9753 Msa1438270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTCATATTATAATAC+AGG - tig0028533:10923-10942 Msa1438270:intron 10.0%
!!! TTTTTTGTTAAAAATAAGAA+AGG + tig0028533:11731-11750 None:intergenic 10.0%
!!! ATTCTCAAATATATATATTT+TGG - tig0028533:12057-12076 Msa1438270:intron 10.0%
!!! CTTATTTTATATGAATTTTC+AGG + tig0028533:9040-9059 None:intergenic 15.0%
!! TCCTTAAATTGATTAATTTA+TGG - tig0028533:10198-10217 Msa1438270:intron 15.0%
!! ACCATAAATTAATCAATTTA+AGG + tig0028533:10202-10221 None:intergenic 15.0%
!!! TAATTTTAACACGAATATTT+TGG - tig0028533:10734-10753 Msa1438270:intron 15.0%
!!! TAAAAATGATTTTTGAAAGA+GGG + tig0028533:11065-11084 None:intergenic 15.0%
!!! TTGTTCTTTTATCTTATTTT+CGG + tig0028533:11273-11292 None:intergenic 15.0%
!! CATTAACTAAATGATTTATA+TGG - tig0028533:11326-11345 Msa1438270:CDS 15.0%
!! TTTAATATAATTACATGAAC+AGG - tig0028533:11501-11520 Msa1438270:intron 15.0%
!!! ATATTTAAGTTATGTAAAAG+AGG + tig0028533:11909-11928 None:intergenic 15.0%
!!! ATATATATTTTGGAATTTGT+AGG - tig0028533:12067-12086 Msa1438270:intron 15.0%
!! TAAATAATAACAACGTAAAA+CGG + tig0028533:13318-13337 None:intergenic 15.0%
!!! GATTCTAAATTTTTCTATTA+AGG - tig0028533:14217-14236 Msa1438270:intron 15.0%
!!! ATATAGATAGAATTTAGAAT+TGG + tig0028533:14286-14305 None:intergenic 15.0%
!!! ACATCAAATTTAGAACAATA+AGG + tig0028533:8693-8712 None:intergenic 20.0%
!! TAAAATAAGTAGATTGTACT+TGG - tig0028533:9051-9070 Msa1438270:CDS 20.0%
!! TAATGTTGAATTCATTTGTT+TGG - tig0028533:9101-9120 Msa1438270:intron 20.0%
!!! TCAAACTACAAATTTTGAAA+AGG + tig0028533:9244-9263 None:intergenic 20.0%
!! ATGAAAGAAAATGATATATC+CGG + tig0028533:9314-9333 None:intergenic 20.0%
!!! TATATCATTTTCTTTCATCA+AGG - tig0028533:9316-9335 Msa1438270:intron 20.0%
!!! ATGATAGTCATTTTCAATTT+AGG - tig0028533:9587-9606 Msa1438270:CDS 20.0%
!!! TGATAGTCATTTTCAATTTA+GGG - tig0028533:9588-9607 Msa1438270:CDS 20.0%
!! AATAGACAATTGTGTAAAAT+TGG + tig0028533:9777-9796 None:intergenic 20.0%
!! TATTGTAATAAGAGGAAATA+GGG + tig0028533:9807-9826 None:intergenic 20.0%
!! ATATTGTAATAAGAGGAAAT+AGG + tig0028533:9808-9827 None:intergenic 20.0%
!! AGAAGTAATATTGTAATAAG+AGG + tig0028533:9815-9834 None:intergenic 20.0%
!!! TCATTTGGGTATTTTAAAAA+AGG + tig0028533:9859-9878 None:intergenic 20.0%
!! GGTAATAATTAAACAAACAA+AGG + tig0028533:9923-9942 None:intergenic 20.0%
!!! TAAATTTAAAAGTTTTGGGA+GGG + tig0028533:10633-10652 None:intergenic 20.0%
!!! TTAAATTTAAAAGTTTTGGG+AGG + tig0028533:10634-10653 None:intergenic 20.0%
!! ATAATACAGGATTAAGTAAT+AGG - tig0028533:10936-10955 Msa1438270:intron 20.0%
!!! GTAAAAATGATTTTTGAAAG+AGG + tig0028533:11066-11085 None:intergenic 20.0%
!!! AACTTGTATATTTTACTGTT+AGG - tig0028533:11227-11246 Msa1438270:intron 20.0%
!!! TGTTTTTGATAATATTCATC+AGG + tig0028533:11308-11327 None:intergenic 20.0%
!! ATTTATATGGAATGATTTCA+AGG - tig0028533:11339-11358 Msa1438270:CDS 20.0%
!! TTTACAAAAAATAACCAGTA+AGG + tig0028533:11602-11621 None:intergenic 20.0%
!!! TTTGTAATTACTAGTTTTCT+TGG - tig0028533:11623-11642 Msa1438270:intron 20.0%
!!! TTGTAATTACTAGTTTTCTT+GGG - tig0028533:11624-11643 Msa1438270:intron 20.0%
!! GTTAAAAATAAGAAAGGTTA+AGG + tig0028533:11725-11744 None:intergenic 20.0%
!! AGAATATTAACAGATAATGT+AGG + tig0028533:12029-12048 None:intergenic 20.0%
!!! ATTTCCTTTCATTTTTCTTA+AGG - tig0028533:12306-12325 Msa1438270:intron 20.0%
!! TTGAATACATCTTAAAGTTA+TGG + tig0028533:12458-12477 None:intergenic 20.0%
!!! ACTTTAAGATGTATTCAAAA+TGG - tig0028533:12460-12479 Msa1438270:intron 20.0%
!! AAAAAAATACAGGAAAATAG+AGG - tig0028533:12754-12773 Msa1438270:CDS 20.0%
!!! TTTACGTTGTTATTATTTAC+CGG - tig0028533:13319-13338 Msa1438270:intron 20.0%
!! ACTCATAAATGTATAGATAT+AGG + tig0028533:13427-13446 None:intergenic 20.0%
!!! GCATATAATATTTGTTTTTG+AGG - tig0028533:13610-13629 Msa1438270:intron 20.0%
!!! TAGTTCAAAATCTTGATTTT+TGG - tig0028533:14633-14652 Msa1438270:CDS 20.0%
!!! AGTTCAAAATCTTGATTTTT+GGG - tig0028533:14634-14653 Msa1438270:CDS 20.0%
!! AATTGATAATTGAGAAACGT+TGG + tig0028533:8968-8987 None:intergenic 25.0%
!!! GATAGTCATTTTCAATTTAG+GGG - tig0028533:9589-9608 Msa1438270:CDS 25.0%
!!! ATAGTCATTTTCAATTTAGG+GGG - tig0028533:9590-9609 Msa1438270:CDS 25.0%
!! CTTTTCTTGAAGAAATGAAA+AGG + tig0028533:9685-9704 None:intergenic 25.0%
! TCTTGAGAGCAAAAAAATTA+AGG - tig0028533:9883-9902 Msa1438270:intron 25.0%
! ATTACCACTTTCTTAGATAA+TGG - tig0028533:10465-10484 Msa1438270:intron 25.0%
! ACAGAAAAATGCAATAATGT+TGG - tig0028533:11152-11171 Msa1438270:intron 25.0%
!!! GTACATATTTTTTGCTGATA+AGG - tig0028533:11361-11380 Msa1438270:CDS 25.0%
!!! ATATTACTGACTTTTGCTTT+TGG - tig0028533:11844-11863 Msa1438270:intron 25.0%
!! AACATTTTCCTATTATCCTA+TGG - tig0028533:11880-11899 Msa1438270:intron 25.0%
! AAAGGAAAGATGAAAATACT+TGG + tig0028533:11988-12007 None:intergenic 25.0%
!! AGTATTTTCATCTTTCCTTT+TGG - tig0028533:11988-12007 Msa1438270:CDS 25.0%
!! TCTTTAAGCTTTTTACCAAA+AGG + tig0028533:12006-12025 None:intergenic 25.0%
! ACATCCTTAAGAAAAATGAA+AGG + tig0028533:12313-12332 None:intergenic 25.0%
! GGATGTATATTTGTTTCAAA+TGG - tig0028533:12327-12346 Msa1438270:intron 25.0%
! GTTATCTATTTGATAGAAAC+TGG - tig0028533:12363-12382 Msa1438270:CDS 25.0%
! TGTAATGGTATATAAAGAGA+GGG + tig0028533:12577-12596 None:intergenic 25.0%
! TTGTAATGGTATATAAAGAG+AGG + tig0028533:12578-12597 None:intergenic 25.0%
!!! AATTTTGTTATGGCTTGTAA+TGG + tig0028533:12592-12611 None:intergenic 25.0%
! AGAGTTGAGAAAAAAAATAC+AGG - tig0028533:12744-12763 Msa1438270:CDS 25.0%
! CTATCTAATAACGAGTAATT+AGG - tig0028533:13109-13128 Msa1438270:intron 25.0%
! GAACTTTCTATATCCAATTA+GGG - tig0028533:13131-13150 Msa1438270:intron 25.0%
!! GTATATGTATGTGTTTTCAA+AGG - tig0028533:13198-13217 Msa1438270:intron 25.0%
! AAATAAAGCCTAGAAAAATG+AGG + tig0028533:13375-13394 None:intergenic 25.0%
! ATATGCTTAGTAATCTTGTA+GGG + tig0028533:13596-13615 None:intergenic 25.0%
! TATATGCTTAGTAATCTTGT+AGG + tig0028533:13597-13616 None:intergenic 25.0%
! AACTCAATTTCTCTAAACAA+GGG - tig0028533:13829-13848 Msa1438270:intron 25.0%
!! GCTTAATATTTTATGCAGAT+TGG + tig0028533:13880-13899 None:intergenic 25.0%
! TTCAAATCTAATGTCTTCTT+TGG - tig0028533:14104-14123 Msa1438270:intron 25.0%
! TGTTGACATCATCATTATTA+TGG - tig0028533:14664-14683 Msa1438270:CDS 25.0%
! ATTATTATGGTCAAGTATGA+TGG - tig0028533:14677-14696 Msa1438270:CDS 25.0%
! TAGCAATCAAAAAAAGAAAC+TGG - tig0028533:14746-14765 Msa1438270:CDS 25.0%
! AGCAATCAAAAAAAGAAACT+GGG - tig0028533:14747-14766 Msa1438270:CDS 25.0%
! TGTCATTTCGATTAGGTTAT+TGG + tig0028533:8734-8753 None:intergenic 30.0%
GATCAACTAGCATAAGAAAA+TGG + tig0028533:9015-9034 None:intergenic 30.0%
ATAAGTAGATTGTACTTGGA+TGG - tig0028533:9055-9074 Msa1438270:CDS 30.0%
TAATCCCTGTCAATGAAAAT+AGG + tig0028533:9351-9370 None:intergenic 30.0%
AGGCATCATAATCATATACA+AGG - tig0028533:9534-9553 Msa1438270:CDS 30.0%
CTATCATGTATAAGAACCAT+AGG + tig0028533:9574-9593 None:intergenic 30.0%
ACTCATACTATAAGCACATA+CGG + tig0028533:9649-9668 None:intergenic 30.0%
TCAAATTAATCCTTGTACTG+GGG + tig0028533:9719-9738 None:intergenic 30.0%
CTCAAATTAATCCTTGTACT+GGG + tig0028533:9720-9739 None:intergenic 30.0%
ACTCAAATTAATCCTTGTAC+TGG + tig0028533:9721-9740 None:intergenic 30.0%
GCTCTCAAGAAATATCATTT+GGG + tig0028533:9873-9892 None:intergenic 30.0%
TGCTCTCAAGAAATATCATT+TGG + tig0028533:9874-9893 None:intergenic 30.0%
ATTATTACCTTTACTGTTGC+AGG - tig0028533:9934-9953 Msa1438270:intron 30.0%
! ACTAGCTTACATGACTTTAA+TGG - tig0028533:10295-10314 Msa1438270:intron 30.0%
CTAGCTTACATGACTTTAAT+GGG - tig0028533:10296-10315 Msa1438270:intron 30.0%
TAGAACTTCAACACTGTATT+AGG + tig0028533:10410-10429 None:intergenic 30.0%
GCATGTTTAGATACTTATCT+AGG - tig0028533:10439-10458 Msa1438270:intron 30.0%
GAATCCATTATCTAAGAAAG+TGG + tig0028533:10472-10491 None:intergenic 30.0%
TCTGTGCAATCTAATAACAT+AGG - tig0028533:10514-10533 Msa1438270:intron 30.0%
CAATCTAATAACATAGGTTG+TGG - tig0028533:10520-10539 Msa1438270:intron 30.0%
!! AAATGAAAGTACCTCTTATC+CGG + tig0028533:10562-10581 None:intergenic 30.0%
ATAACTTGAAATACAGTCAG+TGG - tig0028533:10757-10776 Msa1438270:intron 30.0%
GAAAAATGCAATAATGTTGG+TGG - tig0028533:11155-11174 Msa1438270:intron 30.0%
TACTTACTTGTTCAGCATTT+CGG + tig0028533:11208-11227 None:intergenic 30.0%
!!! TATCTTACTTGGCTACTTTT+GGG + tig0028533:11437-11456 None:intergenic 30.0%
! CTGTGATAATGTATCTTACT+TGG + tig0028533:11448-11467 None:intergenic 30.0%
ATAATTACATGAACAGGTGA+TGG - tig0028533:11507-11526 Msa1438270:intron 30.0%
GATCTTATTGGAAAACCATA+CGG - tig0028533:11547-11566 Msa1438270:intron 30.0%
ACTTAAATATACACAGCTTC+TGG - tig0028533:11938-11957 Msa1438270:intron 30.0%
TTTCCAACTCCTATAGTTAT+AGG + tig0028533:12104-12123 None:intergenic 30.0%
GTTGGAAATATCATTTCTGA+AGG - tig0028533:12116-12135 Msa1438270:intron 30.0%
!!! TTTTTCATTGATGATGTCTC+CGG - tig0028533:12142-12161 Msa1438270:CDS 30.0%
GTCTAAACAATTTAGTACCT+TGG + tig0028533:12253-12272 None:intergenic 30.0%
GGTACTAAATTGTTTAGACT+AGG - tig0028533:12254-12273 Msa1438270:intron 30.0%
AGGAAATGACTACAAGATAT+AGG + tig0028533:12293-12312 None:intergenic 30.0%
! ACATACACTATTGTCAGTTT+TGG + tig0028533:12435-12454 None:intergenic 30.0%
!!! TTCAGGTTTTTAAGTAGGAT+CGG - tig0028533:12651-12670 Msa1438270:intron 30.0%
!!! ACTTTCTCTGTTATTTTGCT+TGG + tig0028533:12782-12801 None:intergenic 30.0%
CAAAATAACAGAGAAAGTAG+AGG - tig0028533:12784-12803 Msa1438270:intron 30.0%
AGGAAACAAACAAAAAACAG+AGG - tig0028533:12815-12834 Msa1438270:intron 30.0%
TAATAAACTCCCTGATATGA+AGG + tig0028533:13085-13104 None:intergenic 30.0%
GGAACTTTCTATATCCAATT+AGG - tig0028533:13130-13149 Msa1438270:intron 30.0%
TTCTAAATTACAGCCCTAAT+TGG + tig0028533:13147-13166 None:intergenic 30.0%
!! ACAGTTTTCCTCATTTTTCT+AGG - tig0028533:13364-13383 Msa1438270:intron 30.0%
AAATGTATAGATATAGGCAC+TGG + tig0028533:13421-13440 None:intergenic 30.0%
! ACTTCTGAAAAAGTCAATTC+TGG - tig0028533:13523-13542 Msa1438270:CDS 30.0%
TATGCTTAGTAATCTTGTAG+GGG + tig0028533:13595-13614 None:intergenic 30.0%
AAAGCCTTACATAATGAAAC+TGG - tig0028533:13636-13655 Msa1438270:intron 30.0%
AAGCCTTACATAATGAAACT+GGG - tig0028533:13637-13656 Msa1438270:intron 30.0%
TTACCCAGTTTCATTATGTA+AGG + tig0028533:13643-13662 None:intergenic 30.0%
GAACTCAATTTCTCTAAACA+AGG - tig0028533:13828-13847 Msa1438270:intron 30.0%
! TATTTTATGCAGATTGGTAG+AGG + tig0028533:13874-13893 None:intergenic 30.0%
!! ATTTTCTCAGGTTGTTACAA+AGG - tig0028533:13925-13944 Msa1438270:intron 30.0%
GTCTTCTTTGGTTGAAAATA+TGG - tig0028533:14116-14135 Msa1438270:intron 30.0%
! ATGGTTTTTGCAAATTTTGC+AGG - tig0028533:14441-14460 Msa1438270:intron 30.0%
! TTTTTGCAAATTTTGCAGGT+TGG - tig0028533:14445-14464 Msa1438270:intron 30.0%
! TTTTGCAAATTTTGCAGGTT+GGG - tig0028533:14446-14465 Msa1438270:intron 30.0%
TACATGGCACATAAGTTTAA+CGG + tig0028533:14805-14824 None:intergenic 30.0%
AAGAACAACATGATACTACA+TGG + tig0028533:14821-14840 None:intergenic 30.0%
!! TATTGGCTTATTGCTAACAG+AGG + tig0028533:8717-8736 None:intergenic 35.0%
! ACAGTGTTGTCATTTCGATT+AGG + tig0028533:8741-8760 None:intergenic 35.0%
AACACTTGAGGTCAATTACT+TGG + tig0028533:9284-9303 None:intergenic 35.0%
ACCTCAAGTGTTAATGAATC+CGG - tig0028533:9292-9311 Msa1438270:intron 35.0%
!! AAGTTCTGAATCCTATCTCA+CGG + tig0028533:9460-9479 None:intergenic 35.0%
TGTATAAGAACCATAGGTGT+AGG + tig0028533:9568-9587 None:intergenic 35.0%
GAAAAAATTACCCCAGTACA+AGG - tig0028533:9706-9725 Msa1438270:intron 35.0%
TTTGCACGAACATCTTCATT+TGG - tig0028533:10117-10136 Msa1438270:intron 35.0%
!! TTACATGACTTTAATGGGCT+TGG - tig0028533:10301-10320 Msa1438270:intron 35.0%
!! TACATGACTTTAATGGGCTT+GGG - tig0028533:10302-10321 Msa1438270:intron 35.0%
ATAAGAGCAATGCATTCACA+AGG - tig0028533:10603-10622 Msa1438270:intron 35.0%
TCCATACAGTGTAAGCAATT+GGG - tig0028533:10678-10697 Msa1438270:intron 35.0%
ATCTCTAACTGAAATCCCTA+GGG - tig0028533:10959-10978 Msa1438270:intron 35.0%
ATATCTATAGTTCGAGCTGT+TGG + tig0028533:11007-11026 None:intergenic 35.0%
! GCAAACGAGCTTATTTGTTT+TGG - tig0028533:11406-11425 Msa1438270:CDS 35.0%
!! GTATCTTACTTGGCTACTTT+TGG + tig0028533:11438-11457 None:intergenic 35.0%
TTGAACGTAGGTGATCTTAT+TGG - tig0028533:11535-11554 Msa1438270:intron 35.0%
TTATGTAAGCTTCACCTTAC+TGG - tig0028533:11585-11604 Msa1438270:intron 35.0%
TCTCTCGTACAAGATATATC+TGG - tig0028533:11658-11677 Msa1438270:intron 35.0%
GATACTTCCCTAAGTAAGAA+AGG - tig0028533:11811-11830 Msa1438270:intron 35.0%
ATCCATGCCTTTCTTACTTA+GGG + tig0028533:11821-11840 None:intergenic 35.0%
TATCCATGCCTTTCTTACTT+AGG + tig0028533:11822-11841 None:intergenic 35.0%
TATGTAAAAGAGGTAGCCAT+AGG + tig0028533:11899-11918 None:intergenic 35.0%
GATAAGCAGCCTATAACTAT+AGG - tig0028533:12092-12111 Msa1438270:intron 35.0%
! GGAAATATCATTTCTGAAGG+TGG - tig0028533:12119-12138 Msa1438270:intron 35.0%
AATAAGTTGCGAGTTATCCA+AGG - tig0028533:12233-12252 Msa1438270:intron 35.0%
AGAGTGGTTAAAAAGATCGT+GGG + tig0028533:12533-12552 None:intergenic 35.0%
AAGAGTGGTTAAAAAGATCG+TGG + tig0028533:12534-12553 None:intergenic 35.0%
AAAGAGAGGGAATGAGAAAT+GGG + tig0028533:12564-12583 None:intergenic 35.0%
TAAAGAGAGGGAATGAGAAA+TGG + tig0028533:12565-12584 None:intergenic 35.0%
! TTGGGAGGGAAATTTTGTTA+TGG + tig0028533:12602-12621 None:intergenic 35.0%
!!! TCAGGTTCAGGTTTTTAAGT+AGG - tig0028533:12646-12665 Msa1438270:intron 35.0%
GTGAAAGATCGTAAAAACGA+GGG - tig0028533:12681-12700 Msa1438270:intron 35.0%
AGAAAGTAGAGGAAAAACAG+AGG - tig0028533:12795-12814 Msa1438270:intron 35.0%
AAGAAAAACAGAGCAAACAG+AGG - tig0028533:12855-12874 Msa1438270:intron 35.0%
AATGTGTAACAGAATGGACA+TGG + tig0028533:13016-13035 None:intergenic 35.0%
ATGTCCATTCTGTTACACAT+TGG - tig0028533:13015-13034 Msa1438270:CDS 35.0%
CGGTTTATTGAAATCGATAC+AGG + tig0028533:13268-13287 None:intergenic 35.0%
TAACAACGTAAAACGGAACA+TGG + tig0028533:13311-13330 None:intergenic 35.0%
! TATTTTATTCAAGCCACAGC+AGG - tig0028533:13390-13409 Msa1438270:intron 35.0%
TCTTAAACAGAAGCCAAGTT+CGG + tig0028533:13553-13572 None:intergenic 35.0%
TGATTGTATCTTGACTTCTC+AGG - tig0028533:13745-13764 Msa1438270:intron 35.0%
AGAAATTGAGTTCCATAGAC+AGG + tig0028533:13821-13840 None:intergenic 35.0%
!! ATCAGAATGGACTAAGTATC+AGG + tig0028533:13907-13926 None:intergenic 35.0%
! TAGTCCATTCTGATTTTCTC+AGG - tig0028533:13913-13932 Msa1438270:intron 35.0%
ACAACCTGAGAAAATCAGAA+TGG + tig0028533:13920-13939 None:intergenic 35.0%
TATCACTGTGGATGGAAAAA+AGG - tig0028533:14041-14060 Msa1438270:intron 35.0%
! TTATAACTGCAGTTTTCGCA+AGG + tig0028533:14176-14195 None:intergenic 35.0%
ATCGGTTGGCAGAAAATTAA+TGG - tig0028533:14422-14441 Msa1438270:intron 35.0%
! AAATTGACTAGTTACACCTC+TGG - tig0028533:14469-14488 Msa1438270:intron 35.0%
ATTGTTGGAGACAACATCAT+TGG - tig0028533:14562-14581 Msa1438270:intron 35.0%
! CAAGATTTTGAACTACCAGA+TGG + tig0028533:14628-14647 None:intergenic 35.0%
CTTCGAAGGTTGAAGTAAGA+TGG + tig0028533:8769-8788 None:intergenic 40.0%
AATAGTGAAGATGGAGACCA+TGG + tig0028533:8796-8815 None:intergenic 40.0%
GGTTTGAGGAATAGTGAAGA+TGG + tig0028533:8805-8824 None:intergenic 40.0%
TTGGGAGTAAACAAGGTTTG+AGG + tig0028533:8819-8838 None:intergenic 40.0%
TCTTGTTCTTCTTGTTGCGT+TGG + tig0028533:8861-8880 None:intergenic 40.0%
TGGAAATTACCAAGAAGTCG+TGG + tig0028533:8948-8967 None:intergenic 40.0%
TCCGGATTCATTAACACTTG+AGG + tig0028533:9296-9315 None:intergenic 40.0%
CCCTGTCAATGAAAATAGGA+GGG + tig0028533:9347-9366 None:intergenic 40.0%
! CCCTCCTATTTTCATTGACA+GGG - tig0028533:9344-9363 Msa1438270:intron 40.0%
TCCCTGTCAATGAAAATAGG+AGG + tig0028533:9348-9367 None:intergenic 40.0%
TACTAAAATGGCCGTGAGAT+AGG - tig0028533:9446-9465 Msa1438270:intron 40.0%
! TCATAACGATGAAGAAGCAC+TGG - tig0028533:10012-10031 Msa1438270:intron 40.0%
GAGAACATGCATTTAGCTAC+AGG + tig0028533:10091-10110 None:intergenic 40.0%
GTTGTGGATCTTTCACACTT+CGG - tig0028533:10536-10555 Msa1438270:intron 40.0%
TGCATTGCTCTTATGTGGAA+AGG + tig0028533:10597-10616 None:intergenic 40.0%
GTGAATGCATTGCTCTTATG+TGG + tig0028533:10602-10621 None:intergenic 40.0%
GTCCATACAGTGTAAGCAAT+TGG - tig0028533:10677-10696 Msa1438270:intron 40.0%
TCCCAATTGCTTACACTGTA+TGG + tig0028533:10682-10701 None:intergenic 40.0%
!! CAGAGTACTGCAAACTTTGA+GGG - tig0028533:10808-10827 Msa1438270:intron 40.0%
GATCTCTAACTGAAATCCCT+AGG - tig0028533:10958-10977 Msa1438270:intron 40.0%
AAAACAGTGTCACATCCCTA+GGG + tig0028533:10977-10996 None:intergenic 40.0%
AAAAACAGTGTCACATCCCT+AGG + tig0028533:10978-10997 None:intergenic 40.0%
CTATAGATATTGCACATGCG+TGG - tig0028533:11017-11036 Msa1438270:intron 40.0%
CTTGTTCAGCATTTCGGTAA+TGG + tig0028533:11202-11221 None:intergenic 40.0%
TTACTGTTAGGATTCTCCGA+CGG - tig0028533:11239-11258 Msa1438270:intron 40.0%
! ATTTTCGGTTTAACCTCCGT+CGG + tig0028533:11258-11277 None:intergenic 40.0%
!!! ACGAGCTTATTTGTTTTGGC+AGG - tig0028533:11410-11429 Msa1438270:CDS 40.0%
AGTTGTGAGAATGACAGAGT+CGG - tig0028533:11473-11492 Msa1438270:intron 40.0%
! AAATGTTGATGAGTGCCGTA+TGG + tig0028533:11565-11584 None:intergenic 40.0%
ATGACACGATTGAGCATGTA+AGG + tig0028533:11756-11775 None:intergenic 40.0%
TTCCCTAAGTAAGAAAGGCA+TGG - tig0028533:11816-11835 Msa1438270:intron 40.0%
!! TTTGCTTTTGGCAACGCTTT+TGG - tig0028533:11856-11875 Msa1438270:intron 40.0%
AGAGGTAGCCATAGGATAAT+AGG + tig0028533:11891-11910 None:intergenic 40.0%
CAGCCTATAACTATAGGAGT+TGG - tig0028533:12098-12117 Msa1438270:intron 40.0%
AGAATAGCTTTCCAGACAGA+TGG + tig0028533:12176-12195 None:intergenic 40.0%
TGGAAAGCTATTCTTGCTCA+AGG - tig0028533:12182-12201 Msa1438270:CDS 40.0%
GGAAAGCTATTCTTGCTCAA+GGG - tig0028533:12183-12202 Msa1438270:CDS 40.0%
GAAAGCTATTCTTGCTCAAG+GGG - tig0028533:12184-12203 Msa1438270:CDS 40.0%
! TTGCAATGGGTTCTAATGCT+TGG - tig0028533:12210-12229 Msa1438270:intron 40.0%
CATTCAGAACAAGATATCCC+TGG - tig0028533:12485-12504 Msa1438270:intron 40.0%
AAGAGAGGGAATGAGAAATG+GGG + tig0028533:12563-12582 None:intergenic 40.0%
AAACCTGAACCTGACTACAT+TGG + tig0028533:12640-12659 None:intergenic 40.0%
GGTGAAAGATCGTAAAAACG+AGG - tig0028533:12680-12699 Msa1438270:intron 40.0%
ATCGTGCTTCAACTTTACTC+AGG + tig0028533:12900-12919 None:intergenic 40.0%
GTAAAGTTGAAGCACGATTG+AGG - tig0028533:12902-12921 Msa1438270:intron 40.0%
GGTTCCAATGTGTAACAGAA+TGG + tig0028533:13022-13041 None:intergenic 40.0%
AGAAGGGATGTATAGGATCA+GGG + tig0028533:13044-13063 None:intergenic 40.0%
GGGCTGTAATTTAGAAGTCT+TGG - tig0028533:13151-13170 Msa1438270:intron 40.0%
! GTATGTGTTTTCAAAGGCTC+TGG - tig0028533:13204-13223 Msa1438270:intron 40.0%
GAAATCGATACAGGCCTATA+GGG + tig0028533:13259-13278 None:intergenic 40.0%
TGAAATCGATACAGGCCTAT+AGG + tig0028533:13260-13279 None:intergenic 40.0%
! AGATGTGGAGAAACTTTTGC+CGG + tig0028533:13341-13360 None:intergenic 40.0%
CTAGCACTAAAAGCCTTCAT+GGG + tig0028533:13465-13484 None:intergenic 40.0%
TCTAGCACTAAAAGCCTTCA+TGG + tig0028533:13466-13485 None:intergenic 40.0%
TGTATCTTGACTTCTCAGGA+AGG - tig0028533:13749-13768 Msa1438270:intron 40.0%
!! AATGGACTAAGTATCAGGCA+AGG + tig0028533:13902-13921 None:intergenic 40.0%
TCCATCATATGTTATGAGCC+TGG + tig0028533:13965-13984 None:intergenic 40.0%
! CATATGATGGAGTCAAACAG+AGG - tig0028533:13974-13993 Msa1438270:intron 40.0%
ATGGAGTCAAACAGAGGTTA+TGG - tig0028533:13980-13999 Msa1438270:intron 40.0%
TGGAGTCAAACAGAGGTTAT+GGG - tig0028533:13981-14000 Msa1438270:intron 40.0%
GATAATACTACCAGGTTCTG+CGG + tig0028533:14025-14044 None:intergenic 40.0%
ACCTGGTAGTATTATCACTG+TGG - tig0028533:14029-14048 Msa1438270:intron 40.0%
TCCACAGTGATAATACTACC+AGG + tig0028533:14033-14052 None:intergenic 40.0%
GGTAGTATTATCACTGTGGA+TGG - tig0028533:14033-14052 Msa1438270:intron 40.0%
TCGCAAGGTATGGTTCAATT+GGG + tig0028533:14161-14180 None:intergenic 40.0%
TTCGCAAGGTATGGTTCAAT+TGG + tig0028533:14162-14181 None:intergenic 40.0%
!! TGCTGACTCATTGTACAAGA+TGG + tig0028533:14351-14370 None:intergenic 40.0%
AGGGAACTGTAGGATTACAA+AGG + tig0028533:14397-14416 None:intergenic 40.0%
! TCGGATTAGGTTACATCAAG+AGG - tig0028533:14512-14531 Msa1438270:intron 40.0%
GAAGGAGACAGTGTAATTGT+TGG - tig0028533:14547-14566 Msa1438270:intron 40.0%
AGACGCTGTTGAGAAAGAAA+AGG + tig0028533:14604-14623 None:intergenic 40.0%
CTGAGGTTTGGGAGTAAACA+AGG + tig0028533:8826-8845 None:intergenic 45.0%
! GTGAGCAGAATCTGAGGTTT+GGG + tig0028533:8837-8856 None:intergenic 45.0%
! TGTGAGCAGAATCTGAGGTT+TGG + tig0028533:8838-8857 None:intergenic 45.0%
! GCCCTCCTATTTTCATTGAC+AGG - tig0028533:9343-9362 Msa1438270:intron 45.0%
!! CCATTTTAGTAGCTGAGGTG+GGG + tig0028533:9437-9456 None:intergenic 45.0%
!! GCCATTTTAGTAGCTGAGGT+GGG + tig0028533:9438-9457 None:intergenic 45.0%
ATTATGATGCCTACGAGTCG+AGG + tig0028533:9526-9545 None:intergenic 45.0%
ACAGTGTCCTGCAACAGTAA+AGG + tig0028533:9944-9963 None:intergenic 45.0%
TACAACAACCCCATTGTCTG+CGG + tig0028533:10041-10060 None:intergenic 45.0%
GCTTGGGATGATATTAGCTC+AGG - tig0028533:10318-10337 Msa1438270:intron 45.0%
TTGCAGTACTCTGGTTGTGA+AGG + tig0028533:10801-10820 None:intergenic 45.0%
CCTCAAAGTTTGCAGTACTC+TGG + tig0028533:10810-10829 None:intergenic 45.0%
!! CCAGAGTACTGCAAACTTTG+AGG - tig0028533:10807-10826 Msa1438270:intron 45.0%
! TGCAAACTTTGAGGGTCTAC+AGG - tig0028533:10816-10835 Msa1438270:intron 45.0%
TATTGCACATGCGTGGATCA+TGG - tig0028533:11024-11043 Msa1438270:intron 45.0%
TGGTTTCAGCAGAGACTTGT+AGG - tig0028533:11175-11194 Msa1438270:intron 45.0%
! GTGATGGAAAGCTTGAACGT+AGG - tig0028533:11523-11542 Msa1438270:intron 45.0%
!! AGATATCCCTGGCTTTTGAG+AGG - tig0028533:12496-12515 Msa1438270:intron 45.0%
ACAATGCCTCTCAAAAGCCA+GGG + tig0028533:12505-12524 None:intergenic 45.0%
TACAATGCCTCTCAAAAGCC+AGG + tig0028533:12506-12525 None:intergenic 45.0%
GAAATGGGGAAGGAAAAGAG+TGG + tig0028533:12549-12568 None:intergenic 45.0%
TGGTGGCAAACAGAGGATTT+GGG + tig0028533:12620-12639 None:intergenic 45.0%
! TTGGTGGCAAACAGAGGATT+TGG + tig0028533:12621-12640 None:intergenic 45.0%
! ACTACATTGGTGGCAAACAG+AGG + tig0028533:12627-12646 None:intergenic 45.0%
TGTTTGCCACCAATGTAGTC+AGG - tig0028533:12628-12647 Msa1438270:intron 45.0%
TCGTAGCACGATTCGTAAGT+AGG - tig0028533:12704-12723 Msa1438270:intron 45.0%
GCACGATTCGTAAGTAGGAT+CGG - tig0028533:12709-12728 Msa1438270:intron 45.0%
GATTCGTAAGTAGGATCGGT+AGG - tig0028533:12713-12732 Msa1438270:intron 45.0%
GAAGGGATGTATAGGATCAG+GGG + tig0028533:13043-13062 None:intergenic 45.0%
CAGAAGGGATGTATAGGATC+AGG + tig0028533:13045-13064 None:intergenic 45.0%
GGAGAACAGAAGGGATGTAT+AGG + tig0028533:13051-13070 None:intergenic 45.0%
!! ATAGGGAGATGGGTTGGAAA+CGG + tig0028533:13242-13261 None:intergenic 45.0%
TTTCCAACCCATCTCCCTAT+AGG - tig0028533:13242-13261 Msa1438270:intron 45.0%
ATACAGGCCTATAGGGAGAT+GGG + tig0028533:13252-13271 None:intergenic 45.0%
CCGAGATAGTTTGGAGGTTA+CGG + tig0028533:13288-13307 None:intergenic 45.0%
CCGTAACCTCCAAACTATCT+CGG - tig0028533:13285-13304 Msa1438270:intron 45.0%
GAGGAAAACTGTCACAGATG+TGG + tig0028533:13356-13375 None:intergenic 45.0%
GAAATGTGTCTAGCCCATGA+AGG - tig0028533:13449-13468 Msa1438270:intron 45.0%
TTGTAGGGGAATACGAACAC+TGG + tig0028533:13581-13600 None:intergenic 45.0%
CACAAACGAATTCAACGTCC+TGG - tig0028533:13792-13811 Msa1438270:intron 45.0%
AAACGAATTCAACGTCCTGG+AGG - tig0028533:13795-13814 Msa1438270:intron 45.0%
! CTCAGGTTGTTACAAAGGAC+AGG - tig0028533:13930-13949 Msa1438270:intron 45.0%
GCCAGGCTCATAACATATGA+TGG - tig0028533:13961-13980 Msa1438270:intron 45.0%
GGAGTCAAACAGAGGTTATG+GGG - tig0028533:13982-14001 Msa1438270:intron 45.0%
! ACTGCAGTTTTCGCAAGGTA+TGG + tig0028533:14171-14190 None:intergenic 45.0%
CCTACAGTTCCCTCTTGAAT+CGG - tig0028533:14404-14423 Msa1438270:intron 45.0%
! TTCTGCCAACCGATTCAAGA+GGG + tig0028533:14416-14435 None:intergenic 45.0%
! TTTCTGCCAACCGATTCAAG+AGG + tig0028533:14417-14436 None:intergenic 45.0%
! TGACTAGTTACACCTCTGGA+AGG - tig0028533:14473-14492 Msa1438270:intron 45.0%
!!! TATTTAAATTTAAAAGTTTT+GGG + tig0028533:10637-10656 None:intergenic 5.0%
!!! ATATTTAAATTTAAAAGTTT+TGG + tig0028533:10638-10657 None:intergenic 5.0%
TCAACCTTCGAAGCCAACCA+TGG - tig0028533:8776-8795 Msa1438270:three_prime_UTR 50.0%
GTGAAGATGGAGACCATGGT+TGG + tig0028533:8792-8811 None:intergenic 50.0%
GTTGGTGTGAGCAGAATCTG+AGG + tig0028533:8843-8862 None:intergenic 50.0%
ACCAAGAAGTCGTGGTCGAT+GGG + tig0028533:8940-8959 None:intergenic 50.0%
TACCAAGAAGTCGTGGTCGA+TGG + tig0028533:8941-8960 None:intergenic 50.0%
! TTTTAGTAGCTGAGGTGGGG+AGG + tig0028533:9434-9453 None:intergenic 50.0%
CCCCACCTCAGCTACTAAAA+TGG - tig0028533:9434-9453 Msa1438270:intron 50.0%
!! GGCCATTTTAGTAGCTGAGG+TGG + tig0028533:9439-9458 None:intergenic 50.0%
!! CACGGCCATTTTAGTAGCTG+AGG + tig0028533:9442-9461 None:intergenic 50.0%
! TCATAAGCTCCTCGACTCGT+AGG - tig0028533:9514-9533 Msa1438270:CDS 50.0%
GGATCGAGAACCTACACCTA+TGG - tig0028533:9555-9574 Msa1438270:CDS 50.0%
CAGGACACTGTCAAAACTGC+AGG - tig0028533:9953-9972 Msa1438270:intron 50.0%
TGGATCTTTCACACTTCGGC+CGG - tig0028533:10540-10559 Msa1438270:intron 50.0%
! AACTTTGAGGGTCTACAGGC+AGG - tig0028533:10820-10839 Msa1438270:intron 50.0%
! ACTTTGAGGGTCTACAGGCA+GGG - tig0028533:10821-10840 Msa1438270:intron 50.0%
GAGGGAATGAGAAATGGGGA+AGG + tig0028533:12559-12578 None:intergenic 50.0%
GGCAAACAGAGGATTTGGGA+GGG + tig0028533:12616-12635 None:intergenic 50.0%
TGGCAAACAGAGGATTTGGG+AGG + tig0028533:12617-12636 None:intergenic 50.0%
CCTGAACCTGACTACATTGG+TGG + tig0028533:12637-12656 None:intergenic 50.0%
CCACCAATGTAGTCAGGTTC+AGG - tig0028533:12634-12653 Msa1438270:intron 50.0%
! AAGCACGATTGAGGTGCCTT+GGG - tig0028533:12911-12930 Msa1438270:intron 50.0%
! ATTGAGGTGCCTTGGGATGT+AGG - tig0028533:12918-12937 Msa1438270:intron 50.0%
TCGTTCGATCCTACATCCCA+AGG + tig0028533:12930-12949 None:intergenic 50.0%
!! AGGATCGAGTGCTGGTTTGT+AGG + tig0028533:12954-12973 None:intergenic 50.0%
TTGTAGTCAGGATCGAGTGC+TGG + tig0028533:12962-12981 None:intergenic 50.0%
GCGTCGCAATCATTGTAGTC+AGG + tig0028533:12974-12993 None:intergenic 50.0%
TAGCGCGCACCTTCATATCA+GGG - tig0028533:13073-13092 Msa1438270:intron 50.0%
GATACAGGCCTATAGGGAGA+TGG + tig0028533:13253-13272 None:intergenic 50.0%
ACATGGCCGAGATAGTTTGG+AGG + tig0028533:13294-13313 None:intergenic 50.0%
GGAACATGGCCGAGATAGTT+TGG + tig0028533:13297-13316 None:intergenic 50.0%
!! CAATTCTGGAGTGCCGAACT+TGG - tig0028533:13537-13556 Msa1438270:CDS 50.0%
TCGTTTGTGAGCTCCATTCC+AGG + tig0028533:13781-13800 None:intergenic 50.0%
AAGGACAGGAGACTATAGCC+AGG - tig0028533:13944-13963 Msa1438270:intron 50.0%
ACAATGAGTCAGCACGCTAG+TGG - tig0028533:14357-14376 Msa1438270:intron 50.0%
CCGATTCAAGAGGGAACTGT+AGG + tig0028533:14407-14426 None:intergenic 50.0%
CAGTTCCCTCTTGAATCGGT+TGG - tig0028533:14408-14427 Msa1438270:intron 50.0%
AGGAAGCCATCGGAACACTT+CGG - tig0028533:14493-14512 Msa1438270:intron 50.0%
! CCTAATCCGAAGTGTTCCGA+TGG + tig0028533:14502-14521 None:intergenic 50.0%
CCATCGGAACACTTCGGATT+AGG - tig0028533:14499-14518 Msa1438270:intron 50.0%
AAGAGGCAAGCTGCTTCAGA+AGG - tig0028533:14529-14548 Msa1438270:intron 50.0%
!! GAGACCATGGTTGGCTTCGA+AGG + tig0028533:8783-8802 None:intergenic 55.0%
AAGAAGTCGTGGTCGATGGG+TGG + tig0028533:8937-8956 None:intergenic 55.0%
ACCCATCGACCACGACTTCT+TGG - tig0028533:8936-8955 Msa1438270:CDS 55.0%
! TGTCAAAACTGCAGGTGCCG+AGG - tig0028533:9961-9980 Msa1438270:intron 55.0%
GATCCCTTCCCCAGAAACCT+CGG + tig0028533:9981-10000 None:intergenic 55.0%
CACTGGATGCCGCAGACAAT+GGG - tig0028533:10029-10048 Msa1438270:intron 55.0%
ACTGGATGCCGCAGACAATG+GGG - tig0028533:10030-10049 Msa1438270:intron 55.0%
TCACACTTCGGCCGGATAAG+AGG - tig0028533:10548-10567 Msa1438270:intron 55.0%
CTACAGGCAGGGCAAGTATG+TGG - tig0028533:10832-10851 Msa1438270:intron 55.0%
CTGTTAGGATTCTCCGACGG+AGG - tig0028533:11242-11261 Msa1438270:intron 55.0%
TGCTCAAGGGGCTGTTGCAA+TGG - tig0028533:12196-12215 Msa1438270:intron 55.0%
GCTCAAGGGGCTGTTGCAAT+GGG - tig0028533:12197-12216 Msa1438270:intron 55.0%
! GAAGCACGATTGAGGTGCCT+TGG - tig0028533:12910-12929 Msa1438270:intron 55.0%
CGCGCTACTGGAGAACAGAA+GGG + tig0028533:13060-13079 None:intergenic 55.0%
! GATATGAAGGTGCGCGCTAC+TGG + tig0028533:13072-13091 None:intergenic 55.0%
GTAGCGCGCACCTTCATATC+AGG - tig0028533:13072-13091 Msa1438270:intron 55.0%
AGGCCTATAGGGAGATGGGT+TGG + tig0028533:13248-13267 None:intergenic 55.0%
AGTTCCATAGACAGGCCTCC+AGG + tig0028533:13813-13832 None:intergenic 55.0%
! CACCTCTGGAAGGAAGCCAT+CGG - tig0028533:14483-14502 Msa1438270:intron 55.0%
TTCCGATGGCTTCCTTCCAG+AGG + tig0028533:14488-14507 None:intergenic 55.0%
TCTCAACAGCGTCTGCCATC+TGG - tig0028533:14610-14629 Msa1438270:intron 55.0%
AGTCGTGGTCGATGGGTGGA+GGG + tig0028533:8933-8952 None:intergenic 60.0%
AAGTCGTGGTCGATGGGTGG+AGG + tig0028533:8934-8953 None:intergenic 60.0%
!! ACTGCAGGTGCCGAGGTTTC+TGG - tig0028533:9968-9987 Msa1438270:intron 60.0%
!! CTGCAGGTGCCGAGGTTTCT+GGG - tig0028533:9969-9988 Msa1438270:intron 60.0%
!! TGCAGGTGCCGAGGTTTCTG+GGG - tig0028533:9970-9989 Msa1438270:intron 60.0%
! GTGCCGAGGTTTCTGGGGAA+GGG - tig0028533:9975-9994 Msa1438270:intron 60.0%
GCACTGGATGCCGCAGACAA+TGG - tig0028533:10028-10047 Msa1438270:intron 60.0%
CAGACAGATGGAGCAGCTGC+CGG + tig0028533:12164-12183 None:intergenic 60.0%
GCGCGCTACTGGAGAACAGA+AGG + tig0028533:13061-13080 None:intergenic 60.0%
!! GGCACTGGTAGTACCTGCTG+TGG + tig0028533:13406-13425 None:intergenic 60.0%
TTCTCAGGAAGGCCTGCTCC+TGG - tig0028533:13760-13779 Msa1438270:intron 60.0%
AGGAAGGCCTGCTCCTGGAA+TGG - tig0028533:13765-13784 Msa1438270:intron 60.0%
GTGAGCTCCATTCCAGGAGC+AGG + tig0028533:13775-13794 None:intergenic 60.0%
ACGTCCTGGAGGCCTGTCTA+TGG - tig0028533:13806-13825 Msa1438270:intron 60.0%
CTTTCTGCAGCCGCAGAACC+TGG - tig0028533:14012-14031 Msa1438270:intron 60.0%
GGTCGATGGGTGGAGGGGAA+AGG + tig0028533:8927-8946 None:intergenic 65.0%
GTCGTGGTCGATGGGTGGAG+GGG + tig0028533:8932-8951 None:intergenic 65.0%
! GGTGCCGAGGTTTCTGGGGA+AGG - tig0028533:9974-9993 Msa1438270:intron 65.0%
CGGCAGCTGCTCCATCTGTC+TGG - tig0028533:12162-12181 Msa1438270:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0028533 gene 8675 14895 8675 ID=Msa1438270;Name=Msa1438270
tig0028533 mRNA 8675 14895 8675 ID=Msa1438270-mRNA-1;Parent=Msa1438270;Name=Msa1438270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=73|1|1|1|1|1|12|247|422
tig0028533 exon 8675 9107 8675 ID=Msa1438270-mRNA-1:exon:11161;Parent=Msa1438270-mRNA-1
tig0028533 exon 9508 9635 9508 ID=Msa1438270-mRNA-1:exon:11160;Parent=Msa1438270-mRNA-1
tig0028533 exon 9720 9803 9720 ID=Msa1438270-mRNA-1:exon:11159;Parent=Msa1438270-mRNA-1
tig0028533 exon 11316 11481 11316 ID=Msa1438270-mRNA-1:exon:11158;Parent=Msa1438270-mRNA-1
tig0028533 exon 11982 12047 11982 ID=Msa1438270-mRNA-1:exon:11157;Parent=Msa1438270-mRNA-1
tig0028533 exon 12122 12209 12122 ID=Msa1438270-mRNA-1:exon:11156;Parent=Msa1438270-mRNA-1
tig0028533 exon 12350 12414 12350 ID=Msa1438270-mRNA-1:exon:11155;Parent=Msa1438270-mRNA-1
tig0028533 exon 12525 12590 12525 ID=Msa1438270-mRNA-1:exon:11154;Parent=Msa1438270-mRNA-1
tig0028533 exon 12724 12797 12724 ID=Msa1438270-mRNA-1:exon:11153;Parent=Msa1438270-mRNA-1
tig0028533 exon 13001 13034 13001 ID=Msa1438270-mRNA-1:exon:11152;Parent=Msa1438270-mRNA-1
tig0028533 exon 13513 13614 13513 ID=Msa1438270-mRNA-1:exon:11151;Parent=Msa1438270-mRNA-1
tig0028533 exon 14613 14895 14613 ID=Msa1438270-mRNA-1:exon:11150;Parent=Msa1438270-mRNA-1
tig0028533 five_prime_UTR 14823 14895 14823 ID=Msa1438270-mRNA-1:five_prime_utr;Parent=Msa1438270-mRNA-1
tig0028533 CDS 14613 14822 14613 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 13513 13614 13513 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 13001 13034 13001 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 12724 12797 12724 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 12525 12590 12525 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 12350 12414 12350 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 12122 12209 12122 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 11982 12047 11982 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 11316 11481 11316 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 9720 9803 9720 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 9508 9635 9508 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 CDS 8922 9107 8922 ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533 three_prime_UTR 8675 8921 8675 ID=Msa1438270-mRNA-1:three_prime_utr;Parent=Msa1438270-mRNA-1
Gene Sequence

>Msa1438270

ATGACAACACTGTCACTGCCATCTTACTTCAACCTTCGAAGCCAACCATGGTCTCCATCTTCACTATTCCTCAAACCTTGTTTACTCCCAAACCTCAGATTCTGCTCACACCAACGCAACAAGAAGAACAAGAATCAAATTTCTTACTCTATTTCTGCTCAATCTTCATCTTTCGACCTTTCCCCTCCACCCATCGACCACGACTTCTTGGACACTGTCAAAACTGCAGGTGCCGAGGTTTCTGGGGAAGGGATCGTTGAAACATTTCATAACGATGAAGAAGCACTGGATGCCGCAGACAATGGGGTTGTTGTTGTGGATCTTTCACACTTCGGCCGGATAAGAGTCAGTGGAGATGATCGCGTTCAGTTCCTTCACAACCAGAGTACTGCAAACTTTGAGGGTCTACAGGCAGGGCAAGGATGTGACACTGTTTTTGTAACACCAACAGCTCGAACTATAGATATTGCACATGCGTGGATCATGAAAAATGCAATAATGTTGGTGGTTTCAGCAGAGACTTGTAGGACCATTACCGAAATGCTGAACAAGTACATATTTTTTGCTGATAAGGTAGAGATTCAAGACATCACGAAGCAAACGAGCTTATTTGTTTTGGCAGGACCCAAAAGTAGCCAAGTGATGGAAAGCTTGAACGTAGGTGATCTTATTGGAAAACCATACGGCACTCATCAACATTTTTATGTTGATAAGCAGCCTATAACTATAGGAGTTGGAAATATCATTTCTGAAGGTGGTTTTTCATTGATGATGTCTCCGGCAGCTGCTCCATCTGTCTGGAAAGCTATTCTTGCTCAAGGGGCTGTTGCAATGGGTTCTAATGCTTGGAATAAGTTGCGAGTTATCCAAGGAAGGCCTGCTCCTGGAATGGAGCTCACAAACGAATTCAACGTCCTGGAGGCCTGTCTATGGAACTCAATTTCTCTAAACAAGGGTTGTTACAAAGGACAGGAGACTATAGCCAGGCTCATAACATATGATGGAGTCAAACAGAGGTTATGGGGATTTCATCTTTCTGCAGCCGCAGAACCTGGTAGTATTATCACTGTGGATGGAAAAAAGGTTGGGAAATTGACTAGTTACACCTCTGGAAGGAAGCCATCGGAACACTTCGGATTAGGTTACATCAAGAGGCAAGCTGCTTCAGAAGGAGACAGTGTAATTGTTGGAGACAACATCATTGGAACAATAGTTGAAGTACCTTTTCTTTCTCAACAGCGTCTGCCATCTGGTAGTTCAAAATCTTGA

Protein sequence

>Msa1438270

MTTLSLPSYFNLRSQPWSPSSLFLKPCLLPNLRFCSHQRNKKNKNQISYSISAQSSSFDLSPPPIDHDFLDTVKTAGAEVSGEGIVETFHNDEEALDAADNGVVVVDLSHFGRIRVSGDDRVQFLHNQSTANFEGLQAGQGCDTVFVTPTARTIDIAHAWIMKNAIMLVVSAETCRTITEMLNKYIFFADKVEIQDITKQTSLFVLAGPKSSQVMESLNVGDLIGKPYGTHQHFYVDKQPITIGVGNIISEGGFSLMMSPAAAPSVWKAILAQGAVAMGSNAWNKLRVIQGRPAPGMELTNEFNVLEACLWNSISLNKGCYKGQETIARLITYDGVKQRLWGFHLSAAAEPGSIITVDGKKVGKLTSYTSGRKPSEHFGLGYIKRQAASEGDSVIVGDNIIGTIVEVPFLSQQRLPSGSSKS*