AlfalfaGEDB | Msa1438270

M. sativa cultivar zhongmu-4 / Msa1438270

KEGG: -
GO: -
PFAM: PF01571.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438270	XP_003629967.1	96.682	422	14	0	1	422	1	422	0.0	845

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438270	sp\|Q681Y3\|Y1099_ARATH	67.892	408	120	2	24	422	27	432	0.0	574

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438270	G7L8V3	96.682	422	14	0	1	422	1	422	0.0	845

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa1438270	0.845613	3.640405e-59	-8.615850e-47
Msa0007230	Msa1438270	0.838315	3.094119e-57	-8.615850e-47
Msa0011720	Msa1438270	0.815648	8.299017e-52	-8.615850e-47
Msa0012780	Msa1438270	-0.830891	2.274106e-55	-8.615850e-47
Msa0020630	Msa1438270	0.837773	4.265186e-57	-8.615850e-47
Msa0027540	Msa1438270	0.820076	8.300576e-53	-8.615850e-47
Msa0030730	Msa1438270	0.810368	1.193290e-50	-8.615850e-47
Msa0032120	Msa1438270	0.801455	8.930221e-49	-8.615850e-47
Msa0038350	Msa1438270	-0.861045	1.351209e-63	-8.615850e-47
Msa0039420	Msa1438270	-0.804573	2.024989e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438270	MtrunA17_Chr8g0380691	96.682	422	14	0	1	422	1	422	0.0	845

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1438270	AT1G60990.3	67.892	408	120	2	24	422	27	432	0.0	574
Msa1438270	AT1G60990.2	67.892	408	120	2	24	422	27	432	0.0	574
Msa1438270	AT1G60990.1	67.892	408	120	2	24	422	27	432	0.0	574
Msa1438270	AT1G11860.2	25.444	338	231	11	93	413	70	403	3.58e-12	68.2
Msa1438270	AT1G11860.1	25.444	338	231	11	93	413	70	403	3.58e-12	68.2
Msa1438270	AT1G11860.3	25.444	338	231	11	93	413	85	418	3.67e-12	68.2

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Find 117 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAATTCAACGTCCTGG+AGG	0.732724	tig0028533:-9753	Msa1438270:CDS
AAATGAAAGTACCTCTTATC+CGG	0.476064	tig0028533:+12989	None:intergenic
AAATGTTGATGAGTGCCGTA+TGG	0.628277	tig0028533:+11986	None:intergenic
AAATTGACTAGTTACACCTC+TGG	0.573087	tig0028533:-9079	Msa1438270:CDS
AACTCAATTTCTCTAAACAA+GGG	0.653020	tig0028533:-9719	Msa1438270:intron
AACTTTGAGGGTCTACAGGC+AGG	0.423954	tig0028533:-12728	Msa1438270:CDS
AAGAACAACATGATACTACA+TGG	0.631653	tig0028533:+8730	None:intergenic
AAGAAGTCGTGGTCGATGGG+TGG	0.610174	tig0028533:+14614	None:intergenic
AAGAGGCAAGCTGCTTCAGA+AGG	0.575817	tig0028533:-9019	Msa1438270:CDS
AAGGACAGGAGACTATAGCC+AGG	0.644196	tig0028533:-9604	Msa1438270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATCAACTAGCATAAGAAAA+TGG	+	tig0028533:9015-9034	None:intergenic	30.0%
ATAAGTAGATTGTACTTGGA+TGG	-	tig0028533:9055-9074	Msa1438270:CDS	30.0%
TAATCCCTGTCAATGAAAAT+AGG	+	tig0028533:9351-9370	None:intergenic	30.0%
AGGCATCATAATCATATACA+AGG	-	tig0028533:9534-9553	Msa1438270:CDS	30.0%
CTATCATGTATAAGAACCAT+AGG	+	tig0028533:9574-9593	None:intergenic	30.0%
ACTCATACTATAAGCACATA+CGG	+	tig0028533:9649-9668	None:intergenic	30.0%
TCAAATTAATCCTTGTACTG+GGG	+	tig0028533:9719-9738	None:intergenic	30.0%
CTCAAATTAATCCTTGTACT+GGG	+	tig0028533:9720-9739	None:intergenic	30.0%
ACTCAAATTAATCCTTGTAC+TGG	+	tig0028533:9721-9740	None:intergenic	30.0%
GCTCTCAAGAAATATCATTT+GGG	+	tig0028533:9873-9892	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0028533	gene	8675	14895	8675	ID=Msa1438270;Name=Msa1438270
tig0028533	mRNA	8675	14895	8675	ID=Msa1438270-mRNA-1;Parent=Msa1438270;Name=Msa1438270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=73\|1\|1\|1\|1\|1\|12\|247\|422
tig0028533	exon	8675	9107	8675	ID=Msa1438270-mRNA-1:exon:11161;Parent=Msa1438270-mRNA-1
tig0028533	exon	9508	9635	9508	ID=Msa1438270-mRNA-1:exon:11160;Parent=Msa1438270-mRNA-1
tig0028533	exon	9720	9803	9720	ID=Msa1438270-mRNA-1:exon:11159;Parent=Msa1438270-mRNA-1
tig0028533	exon	11316	11481	11316	ID=Msa1438270-mRNA-1:exon:11158;Parent=Msa1438270-mRNA-1
tig0028533	exon	11982	12047	11982	ID=Msa1438270-mRNA-1:exon:11157;Parent=Msa1438270-mRNA-1
tig0028533	exon	12122	12209	12122	ID=Msa1438270-mRNA-1:exon:11156;Parent=Msa1438270-mRNA-1
tig0028533	exon	12350	12414	12350	ID=Msa1438270-mRNA-1:exon:11155;Parent=Msa1438270-mRNA-1
tig0028533	exon	12525	12590	12525	ID=Msa1438270-mRNA-1:exon:11154;Parent=Msa1438270-mRNA-1
tig0028533	exon	12724	12797	12724	ID=Msa1438270-mRNA-1:exon:11153;Parent=Msa1438270-mRNA-1
tig0028533	exon	13001	13034	13001	ID=Msa1438270-mRNA-1:exon:11152;Parent=Msa1438270-mRNA-1
tig0028533	exon	13513	13614	13513	ID=Msa1438270-mRNA-1:exon:11151;Parent=Msa1438270-mRNA-1
tig0028533	exon	14613	14895	14613	ID=Msa1438270-mRNA-1:exon:11150;Parent=Msa1438270-mRNA-1
tig0028533	five_prime_UTR	14823	14895	14823	ID=Msa1438270-mRNA-1:five_prime_utr;Parent=Msa1438270-mRNA-1
tig0028533	CDS	14613	14822	14613	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	13513	13614	13513	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	13001	13034	13001	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	12724	12797	12724	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	12525	12590	12525	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	12350	12414	12350	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	12122	12209	12122	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	11982	12047	11982	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	11316	11481	11316	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	9720	9803	9720	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	9508	9635	9508	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	CDS	8922	9107	8922	ID=Msa1438270-mRNA-1:cds;Parent=Msa1438270-mRNA-1
tig0028533	three_prime_UTR	8675	8921	8675	ID=Msa1438270-mRNA-1:three_prime_utr;Parent=Msa1438270-mRNA-1

Gene Sequence

>Msa1438270

ATGACAACACTGTCACTGCCATCTTACTTCAACCTTCGAAGCCAACCATGGTCTCCATCTTCACTATTCCTCAAACCTTGTTTACTCCCAAACCTCAGATTCTGCTCACACCAACGCAACAAGAAGAACAAGAATCAAATTTCTTACTCTATTTCTGCTCAATCTTCATCTTTCGACCTTTCCCCTCCACCCATCGACCACGACTTCTTGGACACTGTCAAAACTGCAGGTGCCGAGGTTTCTGGGGAAGGGATCGTTGAAACATTTCATAACGATGAAGAAGCACTGGATGCCGCAGACAATGGGGTTGTTGTTGTGGATCTTTCACACTTCGGCCGGATAAGAGTCAGTGGAGATGATCGCGTTCAGTTCCTTCACAACCAGAGTACTGCAAACTTTGAGGGTCTACAGGCAGGGCAAGGATGTGACACTGTTTTTGTAACACCAACAGCTCGAACTATAGATATTGCACATGCGTGGATCATGAAAAATGCAATAATGTTGGTGGTTTCAGCAGAGACTTGTAGGACCATTACCGAAATGCTGAACAAGTACATATTTTTTGCTGATAAGGTAGAGATTCAAGACATCACGAAGCAAACGAGCTTATTTGTTTTGGCAGGACCCAAAAGTAGCCAAGTGATGGAAAGCTTGAACGTAGGTGATCTTATTGGAAAACCATACGGCACTCATCAACATTTTTATGTTGATAAGCAGCCTATAACTATAGGAGTTGGAAATATCATTTCTGAAGGTGGTTTTTCATTGATGATGTCTCCGGCAGCTGCTCCATCTGTCTGGAAAGCTATTCTTGCTCAAGGGGCTGTTGCAATGGGTTCTAATGCTTGGAATAAGTTGCGAGTTATCCAAGGAAGGCCTGCTCCTGGAATGGAGCTCACAAACGAATTCAACGTCCTGGAGGCCTGTCTATGGAACTCAATTTCTCTAAACAAGGGTTGTTACAAAGGACAGGAGACTATAGCCAGGCTCATAACATATGATGGAGTCAAACAGAGGTTATGGGGATTTCATCTTTCTGCAGCCGCAGAACCTGGTAGTATTATCACTGTGGATGGAAAAAAGGTTGGGAAATTGACTAGTTACACCTCTGGAAGGAAGCCATCGGAACACTTCGGATTAGGTTACATCAAGAGGCAAGCTGCTTCAGAAGGAGACAGTGTAATTGTTGGAGACAACATCATTGGAACAATAGTTGAAGTACCTTTTCTTTCTCAACAGCGTCTGCCATCTGGTAGTTCAAAATCTTGA

Protein sequence

>Msa1438270

MTTLSLPSYFNLRSQPWSPSSLFLKPCLLPNLRFCSHQRNKKNKNQISYSISAQSSSFDLSPPPIDHDFLDTVKTAGAEVSGEGIVETFHNDEEALDAADNGVVVVDLSHFGRIRVSGDDRVQFLHNQSTANFEGLQAGQGCDTVFVTPTARTIDIAHAWIMKNAIMLVVSAETCRTITEMLNKYIFFADKVEIQDITKQTSLFVLAGPKSSQVMESLNVGDLIGKPYGTHQHFYVDKQPITIGVGNIISEGGFSLMMSPAAAPSVWKAILAQGAVAMGSNAWNKLRVIQGRPAPGMELTNEFNVLEACLWNSISLNKGCYKGQETIARLITYDGVKQRLWGFHLSAAAEPGSIITVDGKKVGKLTSYTSGRKPSEHFGLGYIKRQAASEGDSVIVGDNIIGTIVEVPFLSQQRLPSGSSKS*