Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830290 | XP_039685959.1 | 88.983 | 354 | 24 | 4 | 36 | 385 | 1 | 343 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830290 | sp|P52780|SYQ_LUPLU | 85.065 | 308 | 44 | 2 | 36 | 342 | 1 | 307 | 3.21e-180 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830290 | G7ICA2 | 88.983 | 354 | 24 | 4 | 36 | 385 | 1 | 343 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa0830290 | 0.809729 | 1.638674e-50 | -8.615850e-47 |
| Msa0137540 | Msa0830290 | 0.822384 | 2.438441e-53 | -8.615850e-47 |
| Msa0547680 | Msa0830290 | 0.803186 | 3.931222e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830290 | MtrunA17_Chr1g0209631 | 88.983 | 354 | 24 | 4 | 36 | 385 | 1 | 343 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830290 | AT1G25350.1 | 70.903 | 299 | 85 | 1 | 46 | 342 | 9 | 307 | 2.88e-141 | 421 |
| Msa0830290 | AT1G25350.2 | 67.105 | 304 | 93 | 3 | 46 | 342 | 9 | 312 | 1.35e-131 | 396 |
Find 79 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCGATGTTTATTGATTT+TGG | 0.078301 | 5_4:-3345505 | Msa0830290:CDS |
| CGAAGTATTTGAGGAGAATA+AGG | 0.223897 | 5_4:-3346773 | Msa0830290:CDS |
| TATTTGTGTGTTCAGCATTT+TGG | 0.228082 | 5_4:-3345337 | Msa0830290:CDS |
| TATAATTTACCGTGTAAATA+AGG | 0.262860 | 5_4:+3348080 | None:intergenic |
| TATGGAGATGAAACATTTAC+AGG | 0.271957 | 5_4:-3345365 | Msa0830290:CDS |
| CCTAATGGATATTTGCATAT+TGG | 0.298235 | 5_4:-3345626 | Msa0830290:CDS |
| AGAATAGTACCATCACTAAA+AGG | 0.346828 | 5_4:+3345731 | None:intergenic |
| CGGTTTCCTCCCGAGCCTAA+TGG | 0.353730 | 5_4:-3345641 | Msa0830290:CDS |
| CTGTGACGTTGCGGCGTGAA+AGG | 0.373640 | 5_4:+3348499 | None:intergenic |
| AATGGATTGAGATCTTCTTC+TGG | 0.398450 | 5_4:+3346207 | None:intergenic |
| TGCAAAATTATATGAGCTAC+TGG | 0.410648 | 5_4:-3346423 | Msa0830290:CDS |
| AATAAGGTTTCCAACAGTTC+GGG | 0.413362 | 5_4:+3348096 | None:intergenic |
| AAATAAGGTTTCCAACAGTT+CGG | 0.414367 | 5_4:+3348095 | None:intergenic |
| TTACTAGTTGGTGAGTTACT+TGG | 0.414784 | 5_4:-3346602 | Msa0830290:intron |
| ACCGCATCGACCAACATTGC+TGG | 0.416551 | 5_4:-3347567 | Msa0830290:CDS |
| ATTTCTTGCCAATACGGGTT+CGG | 0.420438 | 5_4:-3347298 | Msa0830290:CDS |
| ACTATCATTTCTTGCCAATA+CGG | 0.420572 | 5_4:-3347304 | Msa0830290:CDS |
| CGATGCGGTAAGGCATTTCC+AGG | 0.432226 | 5_4:+3347581 | None:intergenic |
| GACAAGCATTTGAAAGCAAC+AGG | 0.432915 | 5_4:-3345680 | Msa0830290:CDS |
| AGTCATAGAGGTTCTTCATA+TGG | 0.435124 | 5_4:-3345383 | Msa0830290:CDS |
| ACGTGCGAAAGAGGCTTCCA+TGG | 0.435748 | 5_4:-3346577 | Msa0830290:CDS |
| CTTCAAATTTATTCACATCC+AGG | 0.441234 | 5_4:+3347271 | None:intergenic |
| CCAATATGCAAATATCCATT+AGG | 0.445438 | 5_4:+3345626 | None:intergenic |
| AAACTCACCTCTACTTTAGC+AGG | 0.448864 | 5_4:+3346347 | None:intergenic |
| TTTGAAGAAGCGTGTGGAGT+TGG | 0.453075 | 5_4:-3347255 | Msa0830290:intron |
| AGCTGTTAACGAAGTATTTG+AGG | 0.454671 | 5_4:-3346782 | Msa0830290:CDS |
| GTGGATAACGGCGGTGAGAT+TGG | 0.455593 | 5_4:+3348144 | None:intergenic |
| GAACTACGCTATCGAACAAA+TGG | 0.464729 | 5_4:-3346739 | Msa0830290:intron |
| TTAGCGAACCAGTGTCTCTT+CGG | 0.467428 | 5_4:-3345411 | Msa0830290:intron |
| TGTGACGTTGCGGCGTGAAA+GGG | 0.468432 | 5_4:+3348500 | None:intergenic |
| CTATCATTTCTTGCCAATAC+GGG | 0.481213 | 5_4:-3347303 | Msa0830290:CDS |
| TACTTGGGCACGTGCGAAAG+AGG | 0.484463 | 5_4:-3346586 | Msa0830290:CDS |
| AACGGCAGCCTCGTGGATAA+CGG | 0.493801 | 5_4:+3348132 | None:intergenic |
| GGTGACTTTGTTATTAGCAA+TGG | 0.497008 | 5_4:+3348168 | None:intergenic |
| TGCAAATATCCATTAGGCTC+GGG | 0.498380 | 5_4:+3345632 | None:intergenic |
| CAATACGGGTTCGGAAAACC+TGG | 0.501361 | 5_4:-3347289 | Msa0830290:CDS |
| TTGCGGCGTGAAAGGGGAAG+TGG | 0.509358 | 5_4:+3348507 | None:intergenic |
| TACTAGTTGGTGAGTTACTT+GGG | 0.509631 | 5_4:-3346601 | Msa0830290:intron |
| CAATGTTGGTCGATGCGGTA+AGG | 0.527243 | 5_4:+3347571 | None:intergenic |
| ATGCAAATATCCATTAGGCT+CGG | 0.528175 | 5_4:+3345631 | None:intergenic |
| AACAGTTCGGGTGCAGCCAT+CGG | 0.529593 | 5_4:+3348108 | None:intergenic |
| GATGGCTGCACCCGAACTGT+TGG | 0.531877 | 5_4:-3348106 | Msa0830290:CDS |
| TCGGGTGCAGCCATCGGTAA+CGG | 0.532486 | 5_4:+3348114 | None:intergenic |
| TAGTCCAGAGGAAAATTTGA+AGG | 0.536130 | 5_4:-3346172 | Msa0830290:intron |
| ACAACATATTCCAGCAATGT+TGG | 0.552257 | 5_4:+3347557 | None:intergenic |
| CACGAGGCTGCCGTTACCGA+TGG | 0.559303 | 5_4:-3348124 | Msa0830290:CDS |
| GGCTGATGCAAAAGCTGTCA+AGG | 0.561646 | 5_4:-3346555 | Msa0830290:intron |
| TGTTGGAAACCTTATTTACA+CGG | 0.564262 | 5_4:-3348089 | Msa0830290:intron |
| TCTAAGATATCTTCCTTCGA+AGG | 0.564653 | 5_4:+3348253 | None:intergenic |
| GGATTGAGATCTTCTTCTGG+TGG | 0.565763 | 5_4:+3346210 | None:intergenic |
| CGTGCGAAAGAGGCTTCCAT+GGG | 0.566216 | 5_4:-3346576 | Msa0830290:CDS |
| TCCAGCAATGTTGGTCGATG+CGG | 0.576314 | 5_4:+3347566 | None:intergenic |
| GAAGGAAGATATCTTAGAGA+AGG | 0.581067 | 5_4:-3348248 | Msa0830290:CDS |
| TGATATATGTGCAGGTGTTG+AGG | 0.586897 | 5_4:-3346827 | Msa0830290:intron |
| GTGACGTTGCGGCGTGAAAG+GGG | 0.590845 | 5_4:+3348501 | None:intergenic |
| GGAATATGTTGTTTCATCCA+AGG | 0.591177 | 5_4:-3347546 | Msa0830290:intron |
| GAAGAAGAAGATGCCTTCGA+AGG | 0.592034 | 5_4:-3348266 | Msa0830290:CDS |
| TTTGCATATTGGTCATGCCA+AGG | 0.597648 | 5_4:-3345615 | Msa0830290:intron |
| AGAGAAACCTGCTAAAGTAG+AGG | 0.608147 | 5_4:-3346354 | Msa0830290:intron |
| TCTTCGGCTAAAAGTCATAG+AGG | 0.611300 | 5_4:-3345395 | Msa0830290:CDS |
| AATAAATTTGAAGAAGCGTG+TGG | 0.620386 | 5_4:-3347261 | Msa0830290:CDS |
| TTTGATATTCCCTAGTCCAG+AGG | 0.621334 | 5_4:-3346184 | Msa0830290:CDS |
| GGGTTGGCAAAAGACAGAGA+TGG | 0.630895 | 5_4:-3345484 | Msa0830290:CDS |
| AAGCATTTGAAAGCAACAGG+TGG | 0.630979 | 5_4:-3345677 | Msa0830290:CDS |
| GAGATGGAGGTTGCTACCTG+AGG | 0.632641 | 5_4:-3345468 | Msa0830290:intron |
| CAGGTTGCAACAAAATACCC+TGG | 0.634042 | 5_4:-3347599 | Msa0830290:CDS |
| AGCATTTGAAAGCAACAGGT+GGG | 0.637401 | 5_4:-3345676 | Msa0830290:CDS |
| CATCGGTAACGGCAGCCTCG+TGG | 0.638213 | 5_4:+3348125 | None:intergenic |
| AAATATCCATTAGGCTCGGG+AGG | 0.644834 | 5_4:+3345635 | None:intergenic |
| TTGGCAAAAGACAGAGATGG+AGG | 0.655596 | 5_4:-3345481 | Msa0830290:CDS |
| GATAACGGCGGTGAGATTGG+TGG | 0.656822 | 5_4:+3348147 | None:intergenic |
| ATCATTGCAGGTGAAAACAA+CGG | 0.687951 | 5_4:-3347343 | Msa0830290:intron |
| GATGCGGTAAGGCATTTCCA+GGG | 0.696093 | 5_4:+3347582 | None:intergenic |
| GGCGTGAAAGGGGAAGTGGA+TGG | 0.701985 | 5_4:+3348511 | None:intergenic |
| GGCAGCCTCGTGGATAACGG+CGG | 0.708962 | 5_4:+3348135 | None:intergenic |
| GCAAAATTATATGAGCTACT+GGG | 0.716316 | 5_4:-3346422 | Msa0830290:CDS |
| TGTGTGTTTCTGTGACGTTG+CGG | 0.732583 | 5_4:+3348490 | None:intergenic |
| TCTCACCGCCGTTATCCACG+AGG | 0.734573 | 5_4:-3348140 | Msa0830290:CDS |
| AACGTCACAGAAACACACAC+AGG | 0.734761 | 5_4:-3348486 | Msa0830290:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCAAAATAGAATAAA+AGG | + | chr5_4:3346168-3346187 | None:intergenic | 10.0% |
| !!! | ATATTATCTATTTTACTTTT+TGG | - | chr5_4:3346414-3346433 | Msa0830290:CDS | 10.0% |
| !!! | TGCATTTTATTTTTAAAATG+AGG | + | chr5_4:3347706-3347725 | None:intergenic | 15.0% |
| !! | ACTTAAAACAATAAATCAAA+GGG | + | chr5_4:3348301-3348320 | None:intergenic | 15.0% |
| !! | AACTTAAAACAATAAATCAA+AGG | + | chr5_4:3348302-3348321 | None:intergenic | 15.0% |
| !! | TATAATTTACCGTGTAAATA+AGG | + | chr5_4:3345765-3345784 | None:intergenic | 20.0% |
| !!! | TAAGTTTTTAAGTGTATGTT+TGG | - | chr5_4:3345830-3345849 | Msa0830290:intron | 20.0% |
| !! | CATTAATAGATCAACAAAAA+TGG | + | chr5_4:3346220-3346239 | None:intergenic | 20.0% |
| !! | AGACTAAGTATTAAACATTA+AGG | + | chr5_4:3346714-3346733 | None:intergenic | 20.0% |
| !! | TTAATGTTTAATACTTAGTC+TGG | - | chr5_4:3346713-3346732 | Msa0830290:intron | 20.0% |
| !! | ATTATCCAAACATAATATGT+TGG | - | chr5_4:3347318-3347337 | Msa0830290:CDS | 20.0% |
| !!! | ATGTTTTACTTTTTATCACA+TGG | - | chr5_4:3347540-3347559 | Msa0830290:intron | 20.0% |
| !!! | ACCTTTTTTTTTATACTGCT+TGG | - | chr5_4:3345391-3345410 | Msa0830290:CDS | 25.0% |
| !!! | CCTTTTTTTTTATACTGCTT+GGG | - | chr5_4:3345392-3345411 | Msa0830290:CDS | 25.0% |
| ! | TGAGAAAGTAAAACAAGAAT+GGG | + | chr5_4:3345433-3345452 | None:intergenic | 25.0% |
| ! | ATGAGAAAGTAAAACAAGAA+TGG | + | chr5_4:3345434-3345453 | None:intergenic | 25.0% |
| !! | ATTCTTTTATTAATCATCCG+TGG | - | chr5_4:3345488-3345507 | Msa0830290:CDS | 25.0% |
| ! | TAAAAACAAAGCTTAATCCA+CGG | + | chr5_4:3345508-3345527 | None:intergenic | 25.0% |
| !! | TCGATTGAAACTATTGATTA+GGG | + | chr5_4:3345549-3345568 | None:intergenic | 25.0% |
| !! | TTCGATTGAAACTATTGATT+AGG | + | chr5_4:3345550-3345569 | None:intergenic | 25.0% |
| ! | AAGTTATGTTAGTGTATGTT+TGG | + | chr5_4:3345991-3346010 | None:intergenic | 25.0% |
| ! | ACAACAAAACCAACAATATA+TGG | + | chr5_4:3346328-3346347 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGTTGTATGATAT+AGG | - | chr5_4:3346335-3346354 | Msa0830290:intron | 25.0% |
| !! | TTTGTTGTATGATATAGGAT+TGG | - | chr5_4:3346340-3346359 | Msa0830290:intron | 25.0% |
| !!! | TTTACTTTTTGGTTGTCTAT+TGG | - | chr5_4:3346425-3346444 | Msa0830290:CDS | 25.0% |
| ! | TAAAATTGACCTTAAATCTG+TGG | - | chr5_4:3346640-3346659 | Msa0830290:intron | 25.0% |
| !! | TAAATCAATGTTGTCTTTTG+TGG | + | chr5_4:3346925-3346944 | None:intergenic | 25.0% |
| ! | ATTAGGTATCAACTTAGATT+GGG | - | chr5_4:3346948-3346967 | Msa0830290:intron | 25.0% |
| ! | TTGAATTTGAATCCATTAGA+CGG | + | chr5_4:3347145-3347164 | None:intergenic | 25.0% |
| ! | TTGATCTTTATGTTACTAGT+TGG | - | chr5_4:3347228-3347247 | Msa0830290:intron | 25.0% |
| ! | TGAAATTGCAAACATTTAGT+AGG | + | chr5_4:3347566-3347585 | None:intergenic | 25.0% |
| ! | TTTGACATAATCACATATGT+CGG | + | chr5_4:3347809-3347828 | None:intergenic | 25.0% |
| ! | GTAAATTTATTGAACCTTTC+TGG | - | chr5_4:3347964-3347983 | Msa0830290:intron | 25.0% |
| !!! | ATAATTTTGAAAACCATGGA+AGG | + | chr5_4:3348002-3348021 | None:intergenic | 25.0% |
| !!! | CATCATAATTTTGAAAACCA+TGG | + | chr5_4:3348006-3348025 | None:intergenic | 25.0% |
| CCCAAGCAGTATAAAAAAAA+AGG | + | chr5_4:3345395-3345414 | None:intergenic | 30.0% | |
| !! | CTCGATCTTTTTCTAAAGAT+CGG | - | chr5_4:3345625-3345644 | Msa0830290:CDS | 30.0% |
| AAATAAGGTTTCCAACAGTT+CGG | + | chr5_4:3345750-3345769 | None:intergenic | 30.0% | |
| ! | TGTTGGAAACCTTATTTACA+CGG | - | chr5_4:3345753-3345772 | Msa0830290:intron | 30.0% |
| !!! | TTAAGTGTATGTTTGGCTTT+TGG | - | chr5_4:3345837-3345856 | Msa0830290:intron | 30.0% |
| !!! | TGATTTTTCGACTCTAGAAT+TGG | - | chr5_4:3345885-3345904 | Msa0830290:intron | 30.0% |
| ATGAACCGTTTATCCAAAAA+TGG | - | chr5_4:3346124-3346143 | Msa0830290:intron | 30.0% | |
| !!! | TATGGCCATTTTTGGATAAA+CGG | + | chr5_4:3346132-3346151 | None:intergenic | 30.0% |
| TGTTGATCTATTAATGTTGC+AGG | - | chr5_4:3346224-3346243 | Msa0830290:CDS | 30.0% | |
| !!! | TTTTTGGTTGTCTATTGGTT+TGG | - | chr5_4:3346430-3346449 | Msa0830290:CDS | 30.0% |
| ACTATCATTTCTTGCCAATA+CGG | - | chr5_4:3346538-3346557 | Msa0830290:intron | 30.0% | |
| CTTCAAATTTATTCACATCC+AGG | + | chr5_4:3346574-3346593 | None:intergenic | 30.0% | |
| ! | AATAAATTTGAAGAAGCGTG+TGG | - | chr5_4:3346581-3346600 | Msa0830290:CDS | 30.0% |
| TGTTTAATACTTAGTCTGGT+TGG | - | chr5_4:3346717-3346736 | Msa0830290:intron | 30.0% | |
| ! | AGCTTAGTGTTGTTAATTAG+CGG | - | chr5_4:3346746-3346765 | Msa0830290:CDS | 30.0% |
| !! | ACAACATTGATTTAGCCATT+AGG | - | chr5_4:3346931-3346950 | Msa0830290:intron | 30.0% |
| !! | CAATCTAAGTTGATACCTAA+TGG | + | chr5_4:3346949-3346968 | None:intergenic | 30.0% |
| CATTAGGTATCAACTTAGAT+TGG | - | chr5_4:3346947-3346966 | Msa0830290:intron | 30.0% | |
| !! | AGTTCTGGAGTTCAATTATA+TGG | - | chr5_4:3346982-3347001 | Msa0830290:intron | 30.0% |
| ACATGATATGATATATGTGC+AGG | - | chr5_4:3347007-3347026 | Msa0830290:intron | 30.0% | |
| ! | TGTTCAATTTTTCCGTCTAA+TGG | - | chr5_4:3347130-3347149 | Msa0830290:intron | 30.0% |
| TCCAAACATAATATGTTGGA+TGG | - | chr5_4:3347322-3347341 | Msa0830290:CDS | 30.0% | |
| GATGGCTAATTTATTATTGC+AGG | - | chr5_4:3347340-3347359 | Msa0830290:intron | 30.0% | |
| TGCAAAATTATATGAGCTAC+TGG | - | chr5_4:3347419-3347438 | Msa0830290:intron | 30.0% | |
| GCAAAATTATATGAGCTACT+GGG | - | chr5_4:3347420-3347439 | Msa0830290:intron | 30.0% | |
| ! | TTCTCTTTCTTCTTTTTGGA+AGG | + | chr5_4:3347474-3347493 | None:intergenic | 30.0% |
| ! | AGGTTTCTCTTTCTTCTTTT+TGG | + | chr5_4:3347478-3347497 | None:intergenic | 30.0% |
| ! | AATACCTTCAAATTTTCCTC+TGG | + | chr5_4:3347677-3347696 | None:intergenic | 30.0% |
| !!! | ATGAGCATCATTTTGATTTC+AGG | - | chr5_4:3348074-3348093 | Msa0830290:intron | 30.0% |
| AGAATAGTACCATCACTAAA+AGG | + | chr5_4:3348114-3348133 | None:intergenic | 30.0% | |
| CCAATATGCAAATATCCATT+AGG | + | chr5_4:3348219-3348238 | None:intergenic | 30.0% | |
| ! | CCTAATGGATATTTGCATAT+TGG | - | chr5_4:3348216-3348235 | Msa0830290:CDS | 30.0% |
| !!! | AGGCGATGTTTATTGATTTT+GGG | - | chr5_4:3348338-3348357 | Msa0830290:intron | 30.0% |
| !!! | GATGTTTATTGATTTTGGGT+TGG | - | chr5_4:3348342-3348361 | Msa0830290:intron | 30.0% |
| TATGGAGATGAAACATTTAC+AGG | - | chr5_4:3348477-3348496 | Msa0830290:intron | 30.0% | |
| ! | TATTTGTGTGTTCAGCATTT+TGG | - | chr5_4:3348505-3348524 | Msa0830290:CDS | 30.0% |
| ! | TCTAAGATATCTTCCTTCGA+AGG | + | chr5_4:3345592-3345611 | None:intergenic | 35.0% |
| GAAGGAAGATATCTTAGAGA+AGG | - | chr5_4:3345594-3345613 | Msa0830290:intron | 35.0% | |
| !! | GGTGACTTTGTTATTAGCAA+TGG | + | chr5_4:3345677-3345696 | None:intergenic | 35.0% |
| AATAAGGTTTCCAACAGTTC+GGG | + | chr5_4:3345749-3345768 | None:intergenic | 35.0% | |
| TCAACAAAAATGGCAACTTC+AGG | + | chr5_4:3346210-3346229 | None:intergenic | 35.0% | |
| ACAACATATTCCAGCAATGT+TGG | + | chr5_4:3346288-3346307 | None:intergenic | 35.0% | |
| !! | GGAATATGTTGTTTCATCCA+AGG | - | chr5_4:3346296-3346315 | Msa0830290:intron | 35.0% |
| ACAATATATGGTTCACACCT+TGG | + | chr5_4:3346316-3346335 | None:intergenic | 35.0% | |
| AGGTGTGAACCATATATTGT+TGG | - | chr5_4:3346316-3346335 | Msa0830290:intron | 35.0% | |
| !!! | GTTTGGAAGGTTTTTTACCT+TGG | - | chr5_4:3346447-3346466 | Msa0830290:intron | 35.0% |
| TGAGAAAGAGAATAACTCCA+AGG | + | chr5_4:3346467-3346486 | None:intergenic | 35.0% | |
| GAGTTATTCTCTTTCTCACA+TGG | - | chr5_4:3346469-3346488 | Msa0830290:intron | 35.0% | |
| TATTCTCTTTCTCACATGGA+TGG | - | chr5_4:3346473-3346492 | Msa0830290:intron | 35.0% | |
| ATCATTGCAGGTGAAAACAA+CGG | - | chr5_4:3346499-3346518 | Msa0830290:intron | 35.0% | |
| CTATCATTTCTTGCCAATAC+GGG | - | chr5_4:3346539-3346558 | Msa0830290:intron | 35.0% | |
| !!! | TGGGTATCAACTTTTAGTTC+TGG | - | chr5_4:3346967-3346986 | Msa0830290:intron | 35.0% |
| ! | AGCTGTTAACGAAGTATTTG+AGG | - | chr5_4:3347060-3347079 | Msa0830290:intron | 35.0% |
| ! | CGAAGTATTTGAGGAGAATA+AGG | - | chr5_4:3347069-3347088 | Msa0830290:intron | 35.0% |
| !! | TTACTAGTTGGTGAGTTACT+TGG | - | chr5_4:3347240-3347259 | Msa0830290:intron | 35.0% |
| !! | TACTAGTTGGTGAGTTACTT+GGG | - | chr5_4:3347241-3347260 | Msa0830290:intron | 35.0% |
| GCCATCCAACATATTATGTT+TGG | + | chr5_4:3347326-3347345 | None:intergenic | 35.0% | |
| ! | GCAATTTCACTCGCTTTATT+AGG | - | chr5_4:3347577-3347596 | Msa0830290:CDS | 35.0% |
| !! | AATGGATTGAGATCTTCTTC+TGG | + | chr5_4:3347638-3347657 | None:intergenic | 35.0% |
| GGACTAGGGAATATCAAAAA+TGG | + | chr5_4:3347656-3347675 | None:intergenic | 35.0% | |
| ! | TCAAATTTTCCTCTGGACTA+GGG | + | chr5_4:3347670-3347689 | None:intergenic | 35.0% |
| ! | TTCAAATTTTCCTCTGGACT+AGG | + | chr5_4:3347671-3347690 | None:intergenic | 35.0% |
| TAGTCCAGAGGAAAATTTGA+AGG | - | chr5_4:3347670-3347689 | Msa0830290:intron | 35.0% | |
| ATAATCACATATGTCGGTGT+TGG | + | chr5_4:3347803-3347822 | None:intergenic | 35.0% | |
| ! | ACAGAAGTTCCTTTTAGTGA+TGG | - | chr5_4:3348102-3348121 | Msa0830290:CDS | 35.0% |
| ATGCAAATATCCATTAGGCT+CGG | + | chr5_4:3348214-3348233 | None:intergenic | 35.0% | |
| AGTTTAAGCAATTCTGTCTC+AGG | - | chr5_4:3348318-3348337 | Msa0830290:intron | 35.0% | |
| !!! | CAGGCGATGTTTATTGATTT+TGG | - | chr5_4:3348337-3348356 | Msa0830290:intron | 35.0% |
| GAATAAAAAATGCACACCTC+AGG | + | chr5_4:3348393-3348412 | None:intergenic | 35.0% | |
| AGTCATAGAGGTTCTTCATA+TGG | - | chr5_4:3348459-3348478 | Msa0830290:intron | 35.0% | |
| TTTATACTGCTTGGGTTCCA+TGG | - | chr5_4:3345400-3345419 | Msa0830290:CDS | 40.0% | |
| CAAGAATGGGTCATATACCA+TGG | + | chr5_4:3345420-3345439 | None:intergenic | 40.0% | |
| AAGAAGCTAGAAGCAAGATC+AGG | + | chr5_4:3345806-3345825 | None:intergenic | 40.0% | |
| !! | TGCAGTACTATGGCCATTTT+TGG | + | chr5_4:3346140-3346159 | None:intergenic | 40.0% |
| AAAGGTCATCTGCAGTACTA+TGG | + | chr5_4:3346150-3346169 | None:intergenic | 40.0% | |
| !! | TGGTTGTCTATTGGTTTGGA+AGG | - | chr5_4:3346434-3346453 | Msa0830290:CDS | 40.0% |
| !! | CATGGATGGATTATCATTGC+AGG | - | chr5_4:3346487-3346506 | Msa0830290:intron | 40.0% |
| ATTTCTTGCCAATACGGGTT+CGG | - | chr5_4:3346544-3346563 | Msa0830290:intron | 40.0% | |
| CAAACGACACCACAGATTTA+AGG | + | chr5_4:3346652-3346671 | None:intergenic | 40.0% | |
| !! | CTTAAATCTGTGGTGTCGTT+TGG | - | chr5_4:3346650-3346669 | Msa0830290:intron | 40.0% |
| ! | TGATATATGTGCAGGTGTTG+AGG | - | chr5_4:3347015-3347034 | Msa0830290:intron | 40.0% |
| GAACTACGCTATCGAACAAA+TGG | - | chr5_4:3347103-3347122 | Msa0830290:intron | 40.0% | |
| AGAGAAACCTGCTAAAGTAG+AGG | - | chr5_4:3347488-3347507 | Msa0830290:intron | 40.0% | |
| AAACTCACCTCTACTTTAGC+AGG | + | chr5_4:3347498-3347517 | None:intergenic | 40.0% | |
| TTTGATATTCCCTAGTCCAG+AGG | - | chr5_4:3347658-3347677 | Msa0830290:intron | 40.0% | |
| ! | TTTTATCGATGTGTCGTGTC+TGG | - | chr5_4:3347849-3347868 | Msa0830290:intron | 40.0% |
| ! | AACCTTTCTGGTCAGAGATA+TGG | - | chr5_4:3347976-3347995 | Msa0830290:intron | 40.0% |
| GACAAGCATTTGAAAGCAAC+AGG | - | chr5_4:3348162-3348181 | Msa0830290:CDS | 40.0% | |
| AAGCATTTGAAAGCAACAGG+TGG | - | chr5_4:3348165-3348184 | Msa0830290:CDS | 40.0% | |
| AGCATTTGAAAGCAACAGGT+GGG | - | chr5_4:3348166-3348185 | Msa0830290:CDS | 40.0% | |
| TGCAAATATCCATTAGGCTC+GGG | + | chr5_4:3348213-3348232 | None:intergenic | 40.0% | |
| TTTGCATATTGGTCATGCCA+AGG | - | chr5_4:3348227-3348246 | Msa0830290:CDS | 40.0% | |
| TCTTCGGCTAAAAGTCATAG+AGG | - | chr5_4:3348447-3348466 | Msa0830290:intron | 40.0% | |
| ! | TGTGTGTTTCTGTGACGTTG+CGG | + | chr5_4:3345355-3345374 | None:intergenic | 45.0% |
| AACGTCACAGAAACACACAC+AGG | - | chr5_4:3345356-3345375 | Msa0830290:CDS | 45.0% | |
| GAAGAAGAAGATGCCTTCGA+AGG | - | chr5_4:3345576-3345595 | Msa0830290:intron | 45.0% | |
| AAGCAAGATCAGGTGCGTAT+TGG | + | chr5_4:3345796-3345815 | None:intergenic | 45.0% | |
| CAGGTTGCAACAAAATACCC+TGG | - | chr5_4:3346243-3346262 | Msa0830290:CDS | 45.0% | |
| ! | TTTGAAGAAGCGTGTGGAGT+TGG | - | chr5_4:3346587-3346606 | Msa0830290:CDS | 45.0% |
| TTGAACAAACCGCTCTTTCC+TGG | - | chr5_4:3346895-3346914 | Msa0830290:intron | 45.0% | |
| !! | GGCTTTTCAGGAGTAGCAAT+TGG | + | chr5_4:3347614-3347633 | None:intergenic | 45.0% |
| ! | TCTTCTTCTGGTGGCTTTTC+AGG | + | chr5_4:3347626-3347645 | None:intergenic | 45.0% |
| GGATTGAGATCTTCTTCTGG+TGG | + | chr5_4:3347635-3347654 | None:intergenic | 45.0% | |
| !! | CAGGTGGGAAAGTTTTGACA+CGG | - | chr5_4:3348181-3348200 | Msa0830290:CDS | 45.0% |
| AAATATCCATTAGGCTCGGG+AGG | + | chr5_4:3348210-3348229 | None:intergenic | 45.0% | |
| ATATTGGTCATGCCAAGGTG+TGG | - | chr5_4:3348232-3348251 | Msa0830290:CDS | 45.0% | |
| TTGGCAAAAGACAGAGATGG+AGG | - | chr5_4:3348361-3348380 | Msa0830290:intron | 45.0% | |
| TTAGCGAACCAGTGTCTCTT+CGG | - | chr5_4:3348431-3348450 | Msa0830290:intron | 45.0% | |
| ! | ACTTTTAGCCGAAGAGACAC+TGG | + | chr5_4:3348442-3348461 | None:intergenic | 45.0% |
| ! | GATGCGGTAAGGCATTTCCA+GGG | + | chr5_4:3346263-3346282 | None:intergenic | 50.0% |
| CAATGTTGGTCGATGCGGTA+AGG | + | chr5_4:3346274-3346293 | None:intergenic | 50.0% | |
| TCCAGCAATGTTGGTCGATG+CGG | + | chr5_4:3346279-3346298 | None:intergenic | 50.0% | |
| ! | CAGGTTTTCCGAACCCGTAT+TGG | + | chr5_4:3346555-3346574 | None:intergenic | 50.0% |
| CAATACGGGTTCGGAAAACC+TGG | - | chr5_4:3346553-3346572 | Msa0830290:intron | 50.0% | |
| ! | GTTGTCTTTTGTGGATCGCC+AGG | + | chr5_4:3346916-3346935 | None:intergenic | 50.0% |
| ! | ACAGCTTTTGCATCAGCCCA+TGG | + | chr5_4:3347285-3347304 | None:intergenic | 50.0% |
| GGCTGATGCAAAAGCTGTCA+AGG | - | chr5_4:3347287-3347306 | Msa0830290:CDS | 50.0% | |
| CAGAGCTGACGGCAAATGTT+AGG | + | chr5_4:3347758-3347777 | None:intergenic | 50.0% | |
| GTGTCCGTGTCATGTTTCAC+AGG | - | chr5_4:3347871-3347890 | Msa0830290:intron | 50.0% | |
| GTGGCCTGTGAAACATGACA+CGG | + | chr5_4:3347878-3347897 | None:intergenic | 50.0% | |
| TGTCATGTTTCACAGGCCAC+CGG | - | chr5_4:3347878-3347897 | Msa0830290:intron | 50.0% | |
| CTCCAAACTAGACAAGCACC+CGG | + | chr5_4:3347900-3347919 | None:intergenic | 50.0% | |
| GGCCATATCTCTGACCAGAA+AGG | + | chr5_4:3347981-3348000 | None:intergenic | 50.0% | |
| GTCAGAGATATGGCCTTCCA+TGG | - | chr5_4:3347986-3348005 | Msa0830290:intron | 50.0% | |
| ! | GGGTTGGCAAAAGACAGAGA+TGG | - | chr5_4:3348358-3348377 | Msa0830290:intron | 50.0% |
| TGTGACGTTGCGGCGTGAAA+GGG | + | chr5_4:3345345-3345364 | None:intergenic | 55.0% | |
| ! | GATAACGGCGGTGAGATTGG+TGG | + | chr5_4:3345698-3345717 | None:intergenic | 55.0% |
| ! | GTGGATAACGGCGGTGAGAT+TGG | + | chr5_4:3345701-3345720 | None:intergenic | 55.0% |
| AACGGCAGCCTCGTGGATAA+CGG | + | chr5_4:3345713-3345732 | None:intergenic | 55.0% | |
| AACAGTTCGGGTGCAGCCAT+CGG | + | chr5_4:3345737-3345756 | None:intergenic | 55.0% | |
| ! | CGATGCGGTAAGGCATTTCC+AGG | + | chr5_4:3346264-3346283 | None:intergenic | 55.0% |
| ! | ACCGCATCGACCAACATTGC+TGG | - | chr5_4:3346275-3346294 | Msa0830290:intron | 55.0% |
| TGTGGATCGCCAGGAAAGAG+CGG | + | chr5_4:3346907-3346926 | None:intergenic | 55.0% | |
| TACTTGGGCACGTGCGAAAG+AGG | - | chr5_4:3347256-3347275 | Msa0830290:CDS | 55.0% | |
| ACGTGCGAAAGAGGCTTCCA+TGG | - | chr5_4:3347265-3347284 | Msa0830290:CDS | 55.0% | |
| CGTGCGAAAGAGGCTTCCAT+GGG | - | chr5_4:3347266-3347285 | Msa0830290:CDS | 55.0% | |
| !! | TGTCGGTGCTACAGAGCTGA+CGG | + | chr5_4:3347769-3347788 | None:intergenic | 55.0% |
| TGTTGGACACTGACGCGTGT+CGG | + | chr5_4:3347786-3347805 | None:intergenic | 55.0% | |
| GTCATGTTTCACAGGCCACC+GGG | - | chr5_4:3347879-3347898 | Msa0830290:intron | 55.0% | |
| CAAACTAGACAAGCACCCGG+TGG | + | chr5_4:3347897-3347916 | None:intergenic | 55.0% | |
| CACCGGGTGCTTGTCTAGTT+TGG | - | chr5_4:3347895-3347914 | Msa0830290:intron | 55.0% | |
| ATGTCGCATGCACCACACCT+TGG | + | chr5_4:3348247-3348266 | None:intergenic | 55.0% | |
| GAGATGGAGGTTGCTACCTG+AGG | - | chr5_4:3348374-3348393 | Msa0830290:intron | 55.0% | |
| GGCGTGAAAGGGGAAGTGGA+TGG | + | chr5_4:3345334-3345353 | None:intergenic | 60.0% | |
| TTGCGGCGTGAAAGGGGAAG+TGG | + | chr5_4:3345338-3345357 | None:intergenic | 60.0% | |
| GTGACGTTGCGGCGTGAAAG+GGG | + | chr5_4:3345344-3345363 | None:intergenic | 60.0% | |
| CTGTGACGTTGCGGCGTGAA+AGG | + | chr5_4:3345346-3345365 | None:intergenic | 60.0% | |
| TCTCACCGCCGTTATCCACG+AGG | - | chr5_4:3345702-3345721 | Msa0830290:CDS | 60.0% | |
| TCGGGTGCAGCCATCGGTAA+CGG | + | chr5_4:3345731-3345750 | None:intergenic | 60.0% | |
| GATGGCTGCACCCGAACTGT+TGG | - | chr5_4:3345736-3345755 | Msa0830290:CDS | 60.0% | |
| CGGTTTCCTCCCGAGCCTAA+TGG | - | chr5_4:3348201-3348220 | Msa0830290:CDS | 60.0% | |
| ! | GGCAGCCTCGTGGATAACGG+CGG | + | chr5_4:3345710-3345729 | None:intergenic | 65.0% |
| ! | CATCGGTAACGGCAGCCTCG+TGG | + | chr5_4:3345720-3345739 | None:intergenic | 65.0% |
| CACGAGGCTGCCGTTACCGA+TGG | - | chr5_4:3345718-3345737 | Msa0830290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3345300 | 3348564 | 3345300 | ID=Msa0830290;Name=Msa0830290 |
| chr5_4 | mRNA | 3345300 | 3348564 | 3345300 | ID=Msa0830290-mRNA-1;Parent=Msa0830290;Name=Msa0830290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.8|0.63|0.90|0.8|0.81|11|0|385 |
| chr5_4 | exon | 3345300 | 3345429 | 3345300 | ID=Msa0830290-mRNA-1:exon:1261;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3345469 | 3345524 | 3345469 | ID=Msa0830290-mRNA-1:exon:1260;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3345616 | 3345768 | 3345616 | ID=Msa0830290-mRNA-1:exon:1259;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3346173 | 3346265 | 3346173 | ID=Msa0830290-mRNA-1:exon:1258;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3346355 | 3346456 | 3346355 | ID=Msa0830290-mRNA-1:exon:1257;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3346556 | 3346617 | 3346556 | ID=Msa0830290-mRNA-1:exon:1256;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3346740 | 3346835 | 3346740 | ID=Msa0830290-mRNA-1:exon:1255;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3347256 | 3347355 | 3347256 | ID=Msa0830290-mRNA-1:exon:1254;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3347547 | 3347618 | 3347547 | ID=Msa0830290-mRNA-1:exon:1253;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3348090 | 3348305 | 3348090 | ID=Msa0830290-mRNA-1:exon:1252;Parent=Msa0830290-mRNA-1 |
| chr5_4 | exon | 3348487 | 3348564 | 3348487 | ID=Msa0830290-mRNA-1:exon:1251;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3348487 | 3348564 | 3348487 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3348090 | 3348305 | 3348090 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3347547 | 3347618 | 3347547 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3347256 | 3347355 | 3347256 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3346740 | 3346835 | 3346740 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3346556 | 3346617 | 3346556 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3346355 | 3346456 | 3346355 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3346173 | 3346265 | 3346173 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3345616 | 3345768 | 3345616 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3345469 | 3345524 | 3345469 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| chr5_4 | CDS | 3345300 | 3345429 | 3345300 | ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
