AlfalfaGEDB | Msa0830290

M. sativa cultivar zhongmu-4 / Msa0830290

KEGG: K01886
GO: -
PFAM: PF04558.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830290	XP_039685959.1	88.983	354	24	4	36	385	1	343	0.0	628

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830290	sp\|P52780\|SYQ_LUPLU	85.065	308	44	2	36	342	1	307	3.21e-180	523

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830290	G7ICA2	88.983	354	24	4	36	385	1	343	0.0	628

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035320	Msa0830290	0.809729	1.638674e-50	-8.615850e-47
Msa0137540	Msa0830290	0.822384	2.438441e-53	-8.615850e-47
Msa0547680	Msa0830290	0.803186	3.931222e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830290	MtrunA17_Chr1g0209631	88.983	354	24	4	36	385	1	343	0.0	628

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830290	AT1G25350.1	70.903	299	85	1	46	342	9	307	2.88e-141	421
Msa0830290	AT1G25350.2	67.105	304	93	3	46	342	9	312	1.35e-131	396

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Find 79 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACCTCTACTTTAGC+AGG	0.448864	5_4:+3346347	None:intergenic
AAATAAGGTTTCCAACAGTT+CGG	0.414367	5_4:+3348095	None:intergenic
AAATATCCATTAGGCTCGGG+AGG	0.644834	5_4:+3345635	None:intergenic
AACAGTTCGGGTGCAGCCAT+CGG	0.529593	5_4:+3348108	None:intergenic
AACGGCAGCCTCGTGGATAA+CGG	0.493801	5_4:+3348132	None:intergenic
AACGTCACAGAAACACACAC+AGG	0.734761	5_4:-3348486	Msa0830290:intron
AAGCATTTGAAAGCAACAGG+TGG	0.630979	5_4:-3345677	Msa0830290:CDS
AATAAATTTGAAGAAGCGTG+TGG	0.620386	5_4:-3347261	Msa0830290:CDS
AATAAGGTTTCCAACAGTTC+GGG	0.413362	5_4:+3348096	None:intergenic
AATGGATTGAGATCTTCTTC+TGG	0.398450	5_4:+3346207	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCCAAGCAGTATAAAAAAAA+AGG	+	chr5_4:3345395-3345414	None:intergenic	30.0%
AAATAAGGTTTCCAACAGTT+CGG	+	chr5_4:3345750-3345769	None:intergenic	30.0%
ATGAACCGTTTATCCAAAAA+TGG	-	chr5_4:3346124-3346143	Msa0830290:intron	30.0%
TGTTGATCTATTAATGTTGC+AGG	-	chr5_4:3346224-3346243	Msa0830290:CDS	30.0%
ACTATCATTTCTTGCCAATA+CGG	-	chr5_4:3346538-3346557	Msa0830290:intron	30.0%
CTTCAAATTTATTCACATCC+AGG	+	chr5_4:3346574-3346593	None:intergenic	30.0%
TGTTTAATACTTAGTCTGGT+TGG	-	chr5_4:3346717-3346736	Msa0830290:intron	30.0%
CATTAGGTATCAACTTAGAT+TGG	-	chr5_4:3346947-3346966	Msa0830290:intron	30.0%
ACATGATATGATATATGTGC+AGG	-	chr5_4:3347007-3347026	Msa0830290:intron	30.0%
TCCAAACATAATATGTTGGA+TGG	-	chr5_4:3347322-3347341	Msa0830290:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	3345300	3348564	3345300	ID=Msa0830290;Name=Msa0830290
chr5_4	mRNA	3345300	3348564	3345300	ID=Msa0830290-mRNA-1;Parent=Msa0830290;Name=Msa0830290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.8\|0.63\|0.90\|0.8\|0.81\|11\|0\|385
chr5_4	exon	3345300	3345429	3345300	ID=Msa0830290-mRNA-1:exon:1261;Parent=Msa0830290-mRNA-1
chr5_4	exon	3345469	3345524	3345469	ID=Msa0830290-mRNA-1:exon:1260;Parent=Msa0830290-mRNA-1
chr5_4	exon	3345616	3345768	3345616	ID=Msa0830290-mRNA-1:exon:1259;Parent=Msa0830290-mRNA-1
chr5_4	exon	3346173	3346265	3346173	ID=Msa0830290-mRNA-1:exon:1258;Parent=Msa0830290-mRNA-1
chr5_4	exon	3346355	3346456	3346355	ID=Msa0830290-mRNA-1:exon:1257;Parent=Msa0830290-mRNA-1
chr5_4	exon	3346556	3346617	3346556	ID=Msa0830290-mRNA-1:exon:1256;Parent=Msa0830290-mRNA-1
chr5_4	exon	3346740	3346835	3346740	ID=Msa0830290-mRNA-1:exon:1255;Parent=Msa0830290-mRNA-1
chr5_4	exon	3347256	3347355	3347256	ID=Msa0830290-mRNA-1:exon:1254;Parent=Msa0830290-mRNA-1
chr5_4	exon	3347547	3347618	3347547	ID=Msa0830290-mRNA-1:exon:1253;Parent=Msa0830290-mRNA-1
chr5_4	exon	3348090	3348305	3348090	ID=Msa0830290-mRNA-1:exon:1252;Parent=Msa0830290-mRNA-1
chr5_4	exon	3348487	3348564	3348487	ID=Msa0830290-mRNA-1:exon:1251;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3348487	3348564	3348487	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3348090	3348305	3348090	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3347547	3347618	3347547	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3347256	3347355	3347256	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3346740	3346835	3346740	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3346556	3346617	3346556	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3346355	3346456	3346355	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3346173	3346265	3346173	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3345616	3345768	3345616	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3345469	3345524	3345469	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1
chr5_4	CDS	3345300	3345429	3345300	ID=Msa0830290-mRNA-1:cds;Parent=Msa0830290-mRNA-1

Gene Sequence

>Msa0830290

TTGTTTCTTTCTAACTCTCAGCTCAGCAAATCCATCCACTTCCCCTTTCACGCCGCAACGTCACAGAAACACACACAGTTTCAATCGAACAAGAAGAAGAAGAAGATGCCTTCGAAGGAAGATATCTTAGAGAAGGAGAAGTGTCTCGATCTTTTTCTAAAGATCGGCTTAGATGAACGCACTGCGAAAAACACCATTGCTAATAACAAAGTCACCACCAATCTCACCGCCGTTATCCACGAGGCTGCCGTTACCGATGGCTGCACCCGAACTGTTGGAAACCTTATTTACACGGTTGCAACAAAATACCCTGGAAATGCCTTACCGCATCGACCAACATTGCTGGAATATGTTGTTTCATCCAAGGTGAAAACAACGGCTCAGTTAGATGCAGCACTATCATTTCTTGCCAATACGGGTTCGGAAAACCTGGATGTGAATAAATTTGAAGAAGCGTGTGGAGTTGGTGTTGAGGTTTCAACAGAAGATATTAAGAAAGCTGTTAACGAAGTATTTGAGGAGAATAAGGCTTCAATCATTGAACTACGCTATCGAACAAATGTTGGTGAGTTACTTGGGCACGTGCGAAAGAGGCTTCCATGGGCTGATGCAAAAGCTGTCAAGCAACTTGCTGATGCAAAATTATATGAGCTACTGGGTGATAAAACAGAAGCAGATAATGAAAAGCCTTCCAAAAAGAAGAAAGAGAAACCTGCTAAAGTAGAGGACAAAGCAGCACCAATTGCTACTCCTGAAAAGCCACCAGAAGAAGATCTCAATCCATTTTTGATATTCCCTAGTCCAGAGGAAAATTTGAAGGTGCATACAGAAGTTCCTTTTAGTGATGGTACTATTCTGAGATGTTGCAATACAAAAGCGCTTCTAGACAAGCATTTGAAAGCAACAGGTGGGAAAGTTTTGACACGGTTTCCTCCCGAGCCTAATGGATATTTGCATATTGGTCATGCCAAGGCGATGTTTATTGATTTTGGGTTGGCAAAAGACAGAGATGGAGGTTGCTACCTGAGCGAACCAGTGTCTCTTCGGCTAAAAGTCATAGAGGTTCTTCATATGGAGATGAAACATTTACAGGTTGTCTATTTGTGTGTTCAGCATTTTGGCTATACAAGATTTTTTAAATTTACATTCATTAGTTAG

Protein sequence

>Msa0830290

LFLSNSQLSKSIHFPFHAATSQKHTQFQSNKKKKKMPSKEDILEKEKCLDLFLKIGLDERTAKNTIANNKVTTNLTAVIHEAAVTDGCTRTVGNLIYTVATKYPGNALPHRPTLLEYVVSSKVKTTAQLDAALSFLANTGSENLDVNKFEEACGVGVEVSTEDIKKAVNEVFEENKASIIELRYRTNVGELLGHVRKRLPWADAKAVKQLADAKLYELLGDKTEADNEKPSKKKKEKPAKVEDKAAPIATPEKPPEEDLNPFLIFPSPEENLKVHTEVPFSDGTILRCCNTKALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLSEPVSLRLKVIEVLHMEMKHLQVVYLCVQHFGYTRFFKFTFIS*