Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833370 | XP_024640230.1 | 59.420 | 69 | 15 | 1 | 1 | 56 | 29 | 97 | 5.43e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833370 | G7JVZ5 | 59.420 | 69 | 15 | 1 | 1 | 56 | 29 | 97 | 2.59e-16 | 79.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102120 | Msa0833370 | 0.801256 | 9.812230e-49 | -8.615850e-47 |
| Msa0833370 | Msa1451620 | -0.811197 | 7.897992e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833370 | MtrunA17_Chr5g0398991 | 59.420 | 69 | 15 | 1 | 1 | 56 | 29 | 97 | 5.00e-20 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATACCAAAGCATTATAT+TGG | 0.265891 | 5_4:+6519841 | Msa0833370:CDS |
| AAATACCAAAGCATTATATT+GGG | 0.356702 | 5_4:+6519842 | Msa0833370:CDS |
| AATGATGCAGCTTCGTGATA+TGG | 0.356783 | 5_4:+6520215 | Msa0833370:intron |
| GGATGATACCGATAGTAATA+AGG | 0.383772 | 5_4:+6520236 | Msa0833370:CDS |
| CTTCGAAATCTTGCTAGAAA+AGG | 0.405557 | 5_4:-6519367 | None:intergenic |
| TTCTCCCCAATATAATGCTT+TGG | 0.412939 | 5_4:-6519847 | None:intergenic |
| AAGGAACTTCACACATTAGT+AGG | 0.422356 | 5_4:+6520255 | Msa0833370:CDS |
| TTCTCTCCACATTTCACAGC+AGG | 0.434288 | 5_4:+6519338 | Msa0833370:five_prime_UTR |
| CTACTAGCTTTCTGTTCAGA+AGG | 0.486635 | 5_4:-6519817 | None:intergenic |
| TTCTCTTGAGAACGATTGAA+AGG | 0.506289 | 5_4:-6519285 | None:intergenic |
| TGTCTGCGAATATGATGGTT+GGG | 0.523771 | 5_4:-6519779 | None:intergenic |
| GTGAAGTTCCTTATTACTAT+CGG | 0.523980 | 5_4:-6520244 | None:intergenic |
| TCTCTTGAGAACGATTGAAA+GGG | 0.528118 | 5_4:-6519284 | None:intergenic |
| TTGTCTGCGAATATGATGGT+TGG | 0.577007 | 5_4:-6519780 | None:intergenic |
| TCTAGCAAGATTTCGAAGCA+AGG | 0.586523 | 5_4:+6519372 | Msa0833370:five_prime_UTR |
| ATCGATCCTGCTGTGAAATG+TGG | 0.619764 | 5_4:-6519344 | None:intergenic |
| AATACCAAAGCATTATATTG+GGG | 0.621135 | 5_4:+6519843 | Msa0833370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCATGAATTGAAATGA+GGG | - | chr5_4:6519437-6519456 | None:intergenic | 20.0% |
| !!! | AAATACCAAAGCATTATATT+GGG | + | chr5_4:6519842-6519861 | Msa0833370:CDS | 20.0% |
| !!! | TGTTATCCTAGATTTTTTTT+TGG | + | chr5_4:6519927-6519946 | Msa0833370:intron | 20.0% |
| !!! | GTTATCCTAGATTTTTTTTT+GGG | + | chr5_4:6519928-6519947 | Msa0833370:intron | 20.0% |
| !!! | TTATCCTAGATTTTTTTTTG+GGG | + | chr5_4:6519929-6519948 | Msa0833370:intron | 20.0% |
| !!! | TTATATTGATAGTTTGAGTA+TGG | + | chr5_4:6520151-6520170 | Msa0833370:intron | 20.0% |
| !! | AAATTCATGAATTGAAATGA+GGG | - | chr5_4:6519437-6519456 | None:intergenic | 20.0% |
| !!! | AAATACCAAAGCATTATATT+GGG | + | chr5_4:6519842-6519861 | Msa0833370:CDS | 20.0% |
| !!! | TGTTATCCTAGATTTTTTTT+TGG | + | chr5_4:6519927-6519946 | Msa0833370:intron | 20.0% |
| !!! | GTTATCCTAGATTTTTTTTT+GGG | + | chr5_4:6519928-6519947 | Msa0833370:intron | 20.0% |
| !!! | TTATCCTAGATTTTTTTTTG+GGG | + | chr5_4:6519929-6519948 | Msa0833370:intron | 20.0% |
| !!! | TTATATTGATAGTTTGAGTA+TGG | + | chr5_4:6520151-6520170 | Msa0833370:intron | 20.0% |
| ! | CAAATTCATGAATTGAAATG+AGG | - | chr5_4:6519438-6519457 | None:intergenic | 25.0% |
| !!! | ATTTGATTATTTCTGTGTTC+TGG | + | chr5_4:6519459-6519478 | Msa0833370:intron | 25.0% |
| !!! | GTGTATTTTTTCTGTTTTTC+AGG | + | chr5_4:6519699-6519718 | Msa0833370:intron | 25.0% |
| !! | GAAATACCAAAGCATTATAT+TGG | + | chr5_4:6519841-6519860 | Msa0833370:CDS | 25.0% |
| !! | AATACCAAAGCATTATATTG+GGG | + | chr5_4:6519843-6519862 | Msa0833370:CDS | 25.0% |
| !!! | TATCCTAGATTTTTTTTTGG+GGG | + | chr5_4:6519930-6519949 | Msa0833370:intron | 25.0% |
| ! | CAAATTCATGAATTGAAATG+AGG | - | chr5_4:6519438-6519457 | None:intergenic | 25.0% |
| !!! | ATTTGATTATTTCTGTGTTC+TGG | + | chr5_4:6519459-6519478 | Msa0833370:intron | 25.0% |
| !!! | GTGTATTTTTTCTGTTTTTC+AGG | + | chr5_4:6519699-6519718 | Msa0833370:intron | 25.0% |
| !! | GAAATACCAAAGCATTATAT+TGG | + | chr5_4:6519841-6519860 | Msa0833370:CDS | 25.0% |
| !! | AATACCAAAGCATTATATTG+GGG | + | chr5_4:6519843-6519862 | Msa0833370:CDS | 25.0% |
| !!! | TATCCTAGATTTTTTTTTGG+GGG | + | chr5_4:6519930-6519949 | Msa0833370:intron | 25.0% |
| ! | TGTGGAGAGAAAAAAAGTTT+TGG | - | chr5_4:6519329-6519348 | None:intergenic | 30.0% |
| TATACAATTGTTGTGTGTTC+TGG | + | chr5_4:6519487-6519506 | Msa0833370:intron | 30.0% | |
| ATACAATTGTTGTGTGTTCT+GGG | + | chr5_4:6519488-6519507 | Msa0833370:intron | 30.0% | |
| ATAAGCTTCAACAACGTTAA+TGG | - | chr5_4:6519664-6519683 | None:intergenic | 30.0% | |
| TACTGTTGTGAGAAGAAATT+TGG | - | chr5_4:6519893-6519912 | None:intergenic | 30.0% | |
| !!! | ATCCTAGATTTTTTTTTGGG+GGG | + | chr5_4:6519931-6519950 | Msa0833370:intron | 30.0% |
| GTGAAGTTCCTTATTACTAT+CGG | - | chr5_4:6520247-6520266 | None:intergenic | 30.0% | |
| ! | TGTGGAGAGAAAAAAAGTTT+TGG | - | chr5_4:6519329-6519348 | None:intergenic | 30.0% |
| TATACAATTGTTGTGTGTTC+TGG | + | chr5_4:6519487-6519506 | Msa0833370:intron | 30.0% | |
| ATACAATTGTTGTGTGTTCT+GGG | + | chr5_4:6519488-6519507 | Msa0833370:intron | 30.0% | |
| ATAAGCTTCAACAACGTTAA+TGG | - | chr5_4:6519664-6519683 | None:intergenic | 30.0% | |
| TACTGTTGTGAGAAGAAATT+TGG | - | chr5_4:6519893-6519912 | None:intergenic | 30.0% | |
| !!! | ATCCTAGATTTTTTTTTGGG+GGG | + | chr5_4:6519931-6519950 | Msa0833370:intron | 30.0% |
| GTGAAGTTCCTTATTACTAT+CGG | - | chr5_4:6520247-6520266 | None:intergenic | 30.0% | |
| ! | GAACGATTGAAAGGGTTTTT+AGG | - | chr5_4:6519279-6519298 | None:intergenic | 35.0% |
| TCTCTTGAGAACGATTGAAA+GGG | - | chr5_4:6519287-6519306 | None:intergenic | 35.0% | |
| TTCTCTTGAGAACGATTGAA+AGG | - | chr5_4:6519288-6519307 | None:intergenic | 35.0% | |
| !!! | AGTTTTGGAAGAAGAGAGAA+GGG | - | chr5_4:6519314-6519333 | None:intergenic | 35.0% |
| !!! | AAGTTTTGGAAGAAGAGAGA+AGG | - | chr5_4:6519315-6519334 | None:intergenic | 35.0% |
| CTTCGAAATCTTGCTAGAAA+AGG | - | chr5_4:6519370-6519389 | None:intergenic | 35.0% | |
| CAAAACAATCAACAACCATG+TGG | + | chr5_4:6519591-6519610 | Msa0833370:intron | 35.0% | |
| ! | GATTTTGTCTGCGAATATGA+TGG | - | chr5_4:6519787-6519806 | None:intergenic | 35.0% |
| TTCTCCCCAATATAATGCTT+TGG | - | chr5_4:6519850-6519869 | None:intergenic | 35.0% | |
| !!! | TCCTAGATTTTTTTTTGGGG+GGG | + | chr5_4:6519932-6519951 | Msa0833370:intron | 35.0% |
| ATAGTTTGAGTATGGTGACA+GGG | + | chr5_4:6520159-6520178 | Msa0833370:intron | 35.0% | |
| !!! | TGACAGGGGTTTCAATTTTT+TGG | + | chr5_4:6520174-6520193 | Msa0833370:intron | 35.0% |
| GGATGATACCGATAGTAATA+AGG | + | chr5_4:6520236-6520255 | Msa0833370:CDS | 35.0% | |
| AAGGAACTTCACACATTAGT+AGG | + | chr5_4:6520255-6520274 | Msa0833370:CDS | 35.0% | |
| !!! | GGCGTAGCTGTTTTATTTTA+TGG | + | chr5_4:6520276-6520295 | Msa0833370:CDS | 35.0% |
| ! | GAACGATTGAAAGGGTTTTT+AGG | - | chr5_4:6519279-6519298 | None:intergenic | 35.0% |
| TCTCTTGAGAACGATTGAAA+GGG | - | chr5_4:6519287-6519306 | None:intergenic | 35.0% | |
| TTCTCTTGAGAACGATTGAA+AGG | - | chr5_4:6519288-6519307 | None:intergenic | 35.0% | |
| !!! | AGTTTTGGAAGAAGAGAGAA+GGG | - | chr5_4:6519314-6519333 | None:intergenic | 35.0% |
| !!! | AAGTTTTGGAAGAAGAGAGA+AGG | - | chr5_4:6519315-6519334 | None:intergenic | 35.0% |
| CTTCGAAATCTTGCTAGAAA+AGG | - | chr5_4:6519370-6519389 | None:intergenic | 35.0% | |
| CAAAACAATCAACAACCATG+TGG | + | chr5_4:6519591-6519610 | Msa0833370:intron | 35.0% | |
| ! | GATTTTGTCTGCGAATATGA+TGG | - | chr5_4:6519787-6519806 | None:intergenic | 35.0% |
| TTCTCCCCAATATAATGCTT+TGG | - | chr5_4:6519850-6519869 | None:intergenic | 35.0% | |
| !!! | TCCTAGATTTTTTTTTGGGG+GGG | + | chr5_4:6519932-6519951 | Msa0833370:intron | 35.0% |
| ATAGTTTGAGTATGGTGACA+GGG | + | chr5_4:6520159-6520178 | Msa0833370:intron | 35.0% | |
| !!! | TGACAGGGGTTTCAATTTTT+TGG | + | chr5_4:6520174-6520193 | Msa0833370:intron | 35.0% |
| GGATGATACCGATAGTAATA+AGG | + | chr5_4:6520236-6520255 | Msa0833370:CDS | 35.0% | |
| AAGGAACTTCACACATTAGT+AGG | + | chr5_4:6520255-6520274 | Msa0833370:CDS | 35.0% | |
| !!! | GGCGTAGCTGTTTTATTTTA+TGG | + | chr5_4:6520276-6520295 | Msa0833370:CDS | 35.0% |
| TCTAGCAAGATTTCGAAGCA+AGG | + | chr5_4:6519372-6519391 | Msa0833370:five_prime_UTR | 40.0% | |
| TGTCTGCGAATATGATGGTT+GGG | - | chr5_4:6519782-6519801 | None:intergenic | 40.0% | |
| TTGTCTGCGAATATGATGGT+TGG | - | chr5_4:6519783-6519802 | None:intergenic | 40.0% | |
| !! | CTACTAGCTTTCTGTTCAGA+AGG | - | chr5_4:6519820-6519839 | None:intergenic | 40.0% |
| !!! | CCTAGATTTTTTTTTGGGGG+GGG | + | chr5_4:6519933-6519952 | Msa0833370:intron | 40.0% |
| !!! | CTAGATTTTTTTTTGGGGGG+GGG | + | chr5_4:6519934-6519953 | Msa0833370:intron | 40.0% |
| !!! | TAGATTTTTTTTTGGGGGGG+GGG | + | chr5_4:6519935-6519954 | Msa0833370:intron | 40.0% |
| GATAGTTTGAGTATGGTGAC+AGG | + | chr5_4:6520158-6520177 | Msa0833370:intron | 40.0% | |
| TAGTTTGAGTATGGTGACAG+GGG | + | chr5_4:6520160-6520179 | Msa0833370:intron | 40.0% | |
| ATCACGAAGCTGCATCATTA+GGG | - | chr5_4:6520214-6520233 | None:intergenic | 40.0% | |
| TATCACGAAGCTGCATCATT+AGG | - | chr5_4:6520215-6520234 | None:intergenic | 40.0% | |
| AATGATGCAGCTTCGTGATA+TGG | + | chr5_4:6520215-6520234 | Msa0833370:intron | 40.0% | |
| TCTAGCAAGATTTCGAAGCA+AGG | + | chr5_4:6519372-6519391 | Msa0833370:five_prime_UTR | 40.0% | |
| TGTCTGCGAATATGATGGTT+GGG | - | chr5_4:6519782-6519801 | None:intergenic | 40.0% | |
| TTGTCTGCGAATATGATGGT+TGG | - | chr5_4:6519783-6519802 | None:intergenic | 40.0% | |
| !! | CTACTAGCTTTCTGTTCAGA+AGG | - | chr5_4:6519820-6519839 | None:intergenic | 40.0% |
| !!! | CCTAGATTTTTTTTTGGGGG+GGG | + | chr5_4:6519933-6519952 | Msa0833370:intron | 40.0% |
| !!! | CTAGATTTTTTTTTGGGGGG+GGG | + | chr5_4:6519934-6519953 | Msa0833370:intron | 40.0% |
| !!! | TAGATTTTTTTTTGGGGGGG+GGG | + | chr5_4:6519935-6519954 | Msa0833370:intron | 40.0% |
| GATAGTTTGAGTATGGTGAC+AGG | + | chr5_4:6520158-6520177 | Msa0833370:intron | 40.0% | |
| TAGTTTGAGTATGGTGACAG+GGG | + | chr5_4:6520160-6520179 | Msa0833370:intron | 40.0% | |
| ATCACGAAGCTGCATCATTA+GGG | - | chr5_4:6520214-6520233 | None:intergenic | 40.0% | |
| TATCACGAAGCTGCATCATT+AGG | - | chr5_4:6520215-6520234 | None:intergenic | 40.0% | |
| AATGATGCAGCTTCGTGATA+TGG | + | chr5_4:6520215-6520234 | Msa0833370:intron | 40.0% | |
| TTCTCTCCACATTTCACAGC+AGG | + | chr5_4:6519338-6519357 | Msa0833370:five_prime_UTR | 45.0% | |
| ATCGATCCTGCTGTGAAATG+TGG | - | chr5_4:6519347-6519366 | None:intergenic | 45.0% | |
| AAATCGAGACGATCTCCACA+TGG | - | chr5_4:6519609-6519628 | None:intergenic | 45.0% | |
| CCCCCCCCAAAAAAAAATCT+AGG | - | chr5_4:6519936-6519955 | None:intergenic | 45.0% | |
| !!! | AGATTTTTTTTTGGGGGGGG+GGG | + | chr5_4:6519936-6519955 | Msa0833370:intron | 45.0% |
| AATCCTTGGACCAAATACCG+AGG | - | chr5_4:6519965-6519984 | None:intergenic | 45.0% | |
| TCCAAGGATTCACTAATCCG+AGG | + | chr5_4:6519975-6519994 | Msa0833370:intron | 45.0% | |
| !! | TCCTCGGATTAGTGAATCCT+TGG | - | chr5_4:6519979-6519998 | None:intergenic | 45.0% |
| TTCAATTGAGCTCCCGCTAT+GGG | - | chr5_4:6520007-6520026 | None:intergenic | 45.0% | |
| AGCGAGAGCAAAGTTCTGTA+TGG | + | chr5_4:6520026-6520045 | Msa0833370:intron | 45.0% | |
| ! | CTAGGAGTGTGTTACTCACT+AGG | - | chr5_4:6520074-6520093 | None:intergenic | 45.0% |
| CTAGTGAGTAACACACTCCT+AGG | + | chr5_4:6520072-6520091 | Msa0833370:intron | 45.0% | |
| TTCTCTCCACATTTCACAGC+AGG | + | chr5_4:6519338-6519357 | Msa0833370:five_prime_UTR | 45.0% | |
| ATCGATCCTGCTGTGAAATG+TGG | - | chr5_4:6519347-6519366 | None:intergenic | 45.0% | |
| AAATCGAGACGATCTCCACA+TGG | - | chr5_4:6519609-6519628 | None:intergenic | 45.0% | |
| CCCCCCCCAAAAAAAAATCT+AGG | - | chr5_4:6519936-6519955 | None:intergenic | 45.0% | |
| !!! | AGATTTTTTTTTGGGGGGGG+GGG | + | chr5_4:6519936-6519955 | Msa0833370:intron | 45.0% |
| AATCCTTGGACCAAATACCG+AGG | - | chr5_4:6519965-6519984 | None:intergenic | 45.0% | |
| TCCAAGGATTCACTAATCCG+AGG | + | chr5_4:6519975-6519994 | Msa0833370:intron | 45.0% | |
| !! | TCCTCGGATTAGTGAATCCT+TGG | - | chr5_4:6519979-6519998 | None:intergenic | 45.0% |
| TTCAATTGAGCTCCCGCTAT+GGG | - | chr5_4:6520007-6520026 | None:intergenic | 45.0% | |
| AGCGAGAGCAAAGTTCTGTA+TGG | + | chr5_4:6520026-6520045 | Msa0833370:intron | 45.0% | |
| ! | CTAGGAGTGTGTTACTCACT+AGG | - | chr5_4:6520074-6520093 | None:intergenic | 45.0% |
| CTAGTGAGTAACACACTCCT+AGG | + | chr5_4:6520072-6520091 | Msa0833370:intron | 45.0% | |
| !!! | GATTTTTTTTTGGGGGGGGG+GGG | + | chr5_4:6519937-6519956 | Msa0833370:intron | 50.0% |
| !!! | ATTTTTTTTTGGGGGGGGGG+GGG | + | chr5_4:6519938-6519957 | Msa0833370:intron | 50.0% |
| CTTCAATTGAGCTCCCGCTA+TGG | - | chr5_4:6520008-6520027 | None:intergenic | 50.0% | |
| CACTAGGTCTCACGTTGTGT+TGG | - | chr5_4:6520058-6520077 | None:intergenic | 50.0% | |
| CTTCACCATGCCAACCACTT+GGG | + | chr5_4:6520110-6520129 | Msa0833370:intron | 50.0% | |
| TTCACCATGCCAACCACTTG+GGG | + | chr5_4:6520111-6520130 | Msa0833370:intron | 50.0% | |
| !!! | GATTTTTTTTTGGGGGGGGG+GGG | + | chr5_4:6519937-6519956 | Msa0833370:intron | 50.0% |
| !!! | ATTTTTTTTTGGGGGGGGGG+GGG | + | chr5_4:6519938-6519957 | Msa0833370:intron | 50.0% |
| CTTCAATTGAGCTCCCGCTA+TGG | - | chr5_4:6520008-6520027 | None:intergenic | 50.0% | |
| CACTAGGTCTCACGTTGTGT+TGG | - | chr5_4:6520058-6520077 | None:intergenic | 50.0% | |
| CTTCACCATGCCAACCACTT+GGG | + | chr5_4:6520110-6520129 | Msa0833370:intron | 50.0% | |
| TTCACCATGCCAACCACTTG+GGG | + | chr5_4:6520111-6520130 | Msa0833370:intron | 50.0% | |
| !!! | TTTTTTTTTGGGGGGGGGGG+GGG | + | chr5_4:6519939-6519958 | Msa0833370:intron | 55.0% |
| TCCGAGGACCAATCCCATAG+CGG | + | chr5_4:6519991-6520010 | Msa0833370:intron | 55.0% | |
| TTGAGCTCCCGCTATGGGAT+TGG | - | chr5_4:6520002-6520021 | None:intergenic | 55.0% | |
| CCAAGTGGTTGGCATGGTGA+AGG | - | chr5_4:6520112-6520131 | None:intergenic | 55.0% | |
| CCTTCACCATGCCAACCACT+TGG | + | chr5_4:6520109-6520128 | Msa0833370:intron | 55.0% | |
| TCACCATGCCAACCACTTGG+GGG | + | chr5_4:6520112-6520131 | Msa0833370:intron | 55.0% | |
| !!! | TTTTTTTTTGGGGGGGGGGG+GGG | + | chr5_4:6519939-6519958 | Msa0833370:intron | 55.0% |
| TCCGAGGACCAATCCCATAG+CGG | + | chr5_4:6519991-6520010 | Msa0833370:intron | 55.0% | |
| TTGAGCTCCCGCTATGGGAT+TGG | - | chr5_4:6520002-6520021 | None:intergenic | 55.0% | |
| CCAAGTGGTTGGCATGGTGA+AGG | - | chr5_4:6520112-6520131 | None:intergenic | 55.0% | |
| CCTTCACCATGCCAACCACT+TGG | + | chr5_4:6520109-6520128 | Msa0833370:intron | 55.0% | |
| TCACCATGCCAACCACTTGG+GGG | + | chr5_4:6520112-6520131 | Msa0833370:intron | 55.0% | |
| GGGCCTCGGTATTTGGTCCA+AGG | + | chr5_4:6519959-6519978 | Msa0833370:intron | 60.0% | |
| !! | CCCGCTATGGGATTGGTCCT+CGG | - | chr5_4:6519995-6520014 | None:intergenic | 60.0% |
| CCGAGGACCAATCCCATAGC+GGG | + | chr5_4:6519992-6520011 | Msa0833370:intron | 60.0% | |
| AGGCTGGAGAGTCGAGACCT+AGG | - | chr5_4:6520092-6520111 | None:intergenic | 60.0% | |
| GTGGTTGGCATGGTGAAGGC+TGG | - | chr5_4:6520108-6520127 | None:intergenic | 60.0% | |
| TCACCCCCAAGTGGTTGGCA+TGG | - | chr5_4:6520118-6520137 | None:intergenic | 60.0% | |
| TGCCAACCACTTGGGGGTGA+AGG | + | chr5_4:6520118-6520137 | Msa0833370:intron | 60.0% | |
| GCCAACCACTTGGGGGTGAA+GGG | + | chr5_4:6520119-6520138 | Msa0833370:intron | 60.0% | |
| CCAACCACTTGGGGGTGAAG+GGG | + | chr5_4:6520120-6520139 | Msa0833370:intron | 60.0% | |
| CAAACCCCTTCACCCCCAAG+TGG | - | chr5_4:6520127-6520146 | None:intergenic | 60.0% | |
| GGGCCTCGGTATTTGGTCCA+AGG | + | chr5_4:6519959-6519978 | Msa0833370:intron | 60.0% | |
| !! | CCCGCTATGGGATTGGTCCT+CGG | - | chr5_4:6519995-6520014 | None:intergenic | 60.0% |
| CCGAGGACCAATCCCATAGC+GGG | + | chr5_4:6519992-6520011 | Msa0833370:intron | 60.0% | |
| AGGCTGGAGAGTCGAGACCT+AGG | - | chr5_4:6520092-6520111 | None:intergenic | 60.0% | |
| GTGGTTGGCATGGTGAAGGC+TGG | - | chr5_4:6520108-6520127 | None:intergenic | 60.0% | |
| TCACCCCCAAGTGGTTGGCA+TGG | - | chr5_4:6520118-6520137 | None:intergenic | 60.0% | |
| TGCCAACCACTTGGGGGTGA+AGG | + | chr5_4:6520118-6520137 | Msa0833370:intron | 60.0% | |
| GCCAACCACTTGGGGGTGAA+GGG | + | chr5_4:6520119-6520138 | Msa0833370:intron | 60.0% | |
| CCAACCACTTGGGGGTGAAG+GGG | + | chr5_4:6520120-6520139 | Msa0833370:intron | 60.0% | |
| CAAACCCCTTCACCCCCAAG+TGG | - | chr5_4:6520127-6520146 | None:intergenic | 60.0% | |
| CCCCTTCACCCCCAAGTGGT+TGG | - | chr5_4:6520123-6520142 | None:intergenic | 65.0% | |
| CCCCTTCACCCCCAAGTGGT+TGG | - | chr5_4:6520123-6520142 | None:intergenic | 65.0% | |
| GGGGGGGGGGCCTCGGTATT+TGG | + | chr5_4:6519952-6519971 | Msa0833370:intron | 75.0% | |
| GGGGGGGGGGCCTCGGTATT+TGG | + | chr5_4:6519952-6519971 | Msa0833370:intron | 75.0% | |
| ! | TTTGGGGGGGGGGGGGGCCT+CGG | + | chr5_4:6519945-6519964 | Msa0833370:intron | 80.0% |
| ! | TTTGGGGGGGGGGGGGGCCT+CGG | + | chr5_4:6519945-6519964 | Msa0833370:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6519270 | 6520299 | 6519270 | ID=Msa0833370;Name=Msa0833370 |
| chr5_4 | mRNA | 6519270 | 6520299 | 6519270 | ID=Msa0833370-mRNA-1;Parent=Msa0833370;Name=Msa0833370-mRNA-1;_AED=0.56;_eAED=0.56;_QI=175|0|0.33|0.33|0|0|3|0|58 |
| chr5_4 | exon | 6519270 | 6519393 | 6519270 | ID=Msa0833370-mRNA-1:exon:2874;Parent=Msa0833370-mRNA-1 |
| chr5_4 | exon | 6519721 | 6519870 | 6519721 | ID=Msa0833370-mRNA-1:exon:2875;Parent=Msa0833370-mRNA-1 |
| chr5_4 | exon | 6520225 | 6520299 | 6520225 | ID=Msa0833370-mRNA-1:exon:2876;Parent=Msa0833370-mRNA-1 |
| chr5_4 | five_prime_UTR | 6519270 | 6519393 | 6519270 | ID=Msa0833370-mRNA-1:five_prime_utr;Parent=Msa0833370-mRNA-1 |
| chr5_4 | five_prime_UTR | 6519721 | 6519771 | 6519721 | ID=Msa0833370-mRNA-1:five_prime_utr;Parent=Msa0833370-mRNA-1 |
| chr5_4 | CDS | 6519772 | 6519870 | 6519772 | ID=Msa0833370-mRNA-1:cds;Parent=Msa0833370-mRNA-1 |
| chr5_4 | CDS | 6520225 | 6520299 | 6520225 | ID=Msa0833370-mRNA-1:cds;Parent=Msa0833370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
