AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102120 MtrunA17_Chr1g0156101 90.638 235 22 0 1 235 1 235 4.79e-143 410
Msa0102120 MtrunA17_Chr1g0156081 89.720 214 22 0 22 235 46 259 2.83e-140 403
Msa0102120 MtrunA17_Chr1g0156061 84.564 149 23 0 21 169 44 192 4.02e-88 268
Msa0102120 MtrunA17_Chr7g0218601 45.833 216 107 3 21 235 22 228 8.12e-61 198
Msa0102120 MtrunA17_Chr4g0011861 46.535 202 100 2 33 234 30 223 1.68e-58 187
Msa0102120 MtrunA17_Chr3g0116681 43.966 232 113 6 3 233 15 230 5.89e-58 191
Msa0102120 MtrunA17_Chr4g0011881 48.990 198 92 2 33 230 31 219 1.67e-57 189
Msa0102120 MtrunA17_Chr5g0419691 47.030 202 98 2 33 234 30 222 2.58e-57 189
Msa0102120 MtrunA17_Chr4g0011871 47.525 202 98 2 33 234 30 223 7.19e-57 188
Msa0102120 MtrunA17_Chr4g0011961 44.397 232 118 3 6 235 1 223 1.59e-56 187
Msa0102120 MtrunA17_Chr4g0011921 44.017 234 114 4 3 235 6 223 2.03e-56 187
Msa0102120 MtrunA17_Chr5g0431501 45.320 203 102 1 33 235 34 227 3.62e-56 186
Msa0102120 MtrunA17_Chr5g0431461 45.320 203 102 1 33 235 34 227 3.62e-56 186
Msa0102120 MtrunA17_Chr4g0011931 45.852 229 115 2 7 235 4 223 2.61e-55 179
Msa0102120 MtrunA17_Chr7g0218611 44.186 215 111 2 21 235 22 227 1.34e-54 182
Msa0102120 MtrunA17_Chr5g0431511 43.842 203 105 2 33 235 34 227 1.35e-53 179
Msa0102120 MtrunA17_Chr4g0076161 45.370 216 101 7 3 206 7 217 1.43e-51 174
Msa0102120 MtrunA17_Chr1g0162801 46.561 189 97 3 3 190 8 193 5.77e-50 170
Msa0102120 MtrunA17_Chr4g0011901 46.154 208 103 2 27 234 24 222 1.20e-49 169
Msa0102120 MtrunA17_Chr5g0445461 39.914 233 123 4 2 233 9 225 1.22e-48 166
Msa0102120 MtrunA17_Chr3g0101691 42.424 231 114 5 7 233 9 224 1.29e-48 166
Msa0102120 MtrunA17_Chr4g0011981 44.340 212 109 2 24 235 21 223 1.55e-48 166
Msa0102120 MtrunA17_Chr5g0406651 45.320 203 102 2 33 235 31 224 2.30e-48 166
Msa0102120 MtrunA17_Chr5g0445751 43.229 192 105 2 9 200 21 208 3.86e-48 160
Msa0102120 MtrunA17_Chr3g0101631 46.561 189 98 2 3 191 8 193 6.70e-48 164
Msa0102120 MtrunA17_Chr4g0058201 40.758 211 113 3 25 235 21 219 1.01e-47 164
Msa0102120 MtrunA17_Chr5g0445451 43.979 191 103 3 2 191 9 196 2.14e-47 163
Msa0102120 MtrunA17_Chr3g0101711 40.435 230 119 4 7 233 9 223 2.27e-47 163
Msa0102120 MtrunA17_Chr5g0431641 39.738 229 121 4 6 233 13 225 2.38e-47 163
Msa0102120 MtrunA17_Chr5g0445441 43.979 191 103 3 2 191 50 237 3.11e-47 163
Msa0102120 MtrunA17_Chr3g0101621 47.090 189 94 3 6 191 5 190 5.20e-47 162
Msa0102120 MtrunA17_Chr3g0101721 40.196 204 110 4 13 206 14 215 1.14e-46 161
Msa0102120 MtrunA17_Chr3g0101821 43.077 195 102 3 1 190 1 191 1.37e-46 161
Msa0102120 MtrunA17_Chr6g0463801 40.476 210 110 3 24 233 29 223 2.64e-46 160
Msa0102120 MtrunA17_Chr1g0162811 39.320 206 120 3 3 207 8 209 4.13e-46 160
Msa0102120 MtrunA17_Chr3g0101601 46.703 182 92 2 13 191 14 193 4.98e-46 159
Msa0102120 MtrunA17_Chr5g0445531 40.594 202 104 4 33 233 39 225 9.41e-46 159
Msa0102120 MtrunA17_Chr3g0116741 40.598 234 122 5 5 235 25 244 9.65e-46 159
Msa0102120 MtrunA17_Chr3g0101761 42.487 193 106 3 1 190 1 191 4.15e-45 157
Msa0102120 MtrunA17_Chr8g0382901 41.327 196 114 1 5 200 1 195 5.40e-45 160
Msa0102120 MtrunA17_Chr8g0382901 45.509 167 88 2 28 194 488 651 2.58e-40 147
Msa0102120 MtrunA17_Chr3g0101751 41.709 199 109 4 4 200 13 206 5.58e-45 157
Msa0102120 MtrunA17_Chr3g0101701 42.365 203 102 3 31 233 37 224 7.14e-45 156
Msa0102120 MtrunA17_Chr4g0047631 39.744 234 122 5 4 235 20 236 8.70e-45 156
Msa0102120 MtrunA17_Chr1g0167321 41.463 205 115 3 4 207 6 206 9.33e-45 156
Msa0102120 MtrunA17_Chr3g0101661 39.827 231 120 5 7 233 9 224 9.34e-45 156
Msa0102120 MtrunA17_Chr8g0357431 38.265 196 117 2 5 200 10 201 1.03e-44 156
Msa0102120 MtrunA17_Chr4g0020041 39.394 198 116 2 3 200 8 201 1.14e-44 156
Msa0102120 MtrunA17_Chr6g0463611 37.339 233 129 5 3 233 21 238 1.38e-44 152
Msa0102120 MtrunA17_Chr6g0466331 38.362 232 123 5 6 233 5 220 2.39e-44 155
Msa0102120 MtrunA17_Chr6g0465511 38.362 232 123 5 6 233 5 220 2.67e-44 155
Msa0102120 MtrunA17_Chr5g0445381 42.632 190 104 4 4 191 41 227 3.83e-44 155
Msa0102120 MtrunA17_Chr3g0101651 41.667 204 104 3 30 233 36 224 3.96e-44 154
Msa0102120 MtrunA17_Chr5g0403331 39.904 208 117 4 1 203 1 205 4.29e-44 154
Msa0102120 MtrunA17_Chr5g0403351 40.887 203 111 5 7 203 5 204 7.25e-44 154
Msa0102120 MtrunA17_Chr3g0101831 41.237 194 108 3 4 193 5 196 9.62e-44 154
Msa0102120 MtrunA17_Chr4g0047661 39.149 235 127 6 4 235 19 240 1.13e-43 154
Msa0102120 MtrunA17_Chr5g0445421 42.408 191 106 3 2 191 83 270 1.24e-43 154
Msa0102120 MtrunA17_Chr3g0101731 40.102 197 112 3 1 193 1 195 1.29e-43 153
Msa0102120 MtrunA17_Chr4g0058191 37.768 233 126 4 4 235 3 217 1.41e-43 153
Msa0102120 MtrunA17_Chr5g0446161 42.708 192 104 3 3 190 8 197 1.68e-43 153
Msa0102120 MtrunA17_Chr8g0357421 41.341 179 101 2 22 200 27 201 1.94e-43 152
Msa0102120 MtrunA17_Chr3g0101801 39.512 205 113 5 1 200 8 206 2.60e-43 152
Msa0102120 MtrunA17_Chr3g0101581 39.796 196 112 4 5 200 12 201 3.34e-43 152
Msa0102120 MtrunA17_Chr6g0463791 39.485 233 124 5 3 233 7 224 3.73e-43 152
Msa0102120 MtrunA17_Chr3g0101811 38.710 217 120 5 1 206 1 215 6.20e-43 152
Msa0102120 MtrunA17_Chr3g0101671 39.574 235 121 6 4 233 6 224 8.22e-43 151
Msa0102120 MtrunA17_Chr4g0058231 36.052 233 134 3 3 235 2 219 1.02e-42 150
Msa0102120 MtrunA17_Chr3g0101611 37.745 204 111 3 30 233 36 223 1.35e-42 150
Msa0102120 MtrunA17_Chr6g0472311 35.593 236 137 4 3 235 11 234 1.35e-42 150
Msa0102120 MtrunA17_Chr5g0430101 37.872 235 129 3 1 235 8 225 1.56e-42 150
Msa0102120 MtrunA17_Chr4g0024771 42.553 188 102 4 6 191 13 196 2.17e-42 150
Msa0102120 MtrunA17_Chr5g0430031 40.394 203 107 2 33 235 38 226 2.60e-42 150
Msa0102120 MtrunA17_Chr5g0430111 40.887 203 106 2 33 235 38 226 2.68e-42 148
Msa0102120 MtrunA17_Chr8g0361471 36.638 232 127 5 6 233 5 220 3.11e-42 149
Msa0102120 MtrunA17_Chr5g0431671 46.584 161 82 2 33 191 39 197 4.58e-42 149
Msa0102120 MtrunA17_Chr8g0390881 38.362 232 128 5 5 235 8 225 4.70e-42 149
Msa0102120 MtrunA17_Chr3g0101571 37.255 204 112 3 30 233 34 221 5.89e-42 149
Msa0102120 MtrunA17_Chr2g0310381 40.741 189 111 1 5 193 1 188 6.98e-42 148
Msa0102120 MtrunA17_Chr6g0484811 38.839 224 123 2 12 235 17 226 1.09e-41 148
Msa0102120 MtrunA17_Chr2g0310391 40.212 189 112 1 5 193 1 188 1.23e-41 147
Msa0102120 MtrunA17_Chr5g0446151 42.197 173 96 2 20 190 27 197 1.47e-41 147
Msa0102120 MtrunA17_Chr5g0403321 44.375 160 85 2 33 190 35 192 3.04e-41 147
Msa0102120 MtrunA17_Chr6g0484841 40.686 204 107 3 32 235 37 226 3.10e-41 147
Msa0102120 MtrunA17_Chr5g0445411 43.750 160 87 3 4 161 17 175 3.43e-41 139
Msa0102120 MtrunA17_Chr2g0280261 42.604 169 95 1 22 190 24 190 3.62e-41 146
Msa0102120 MtrunA17_Chr8g0372251 39.234 209 111 5 27 235 30 222 5.53e-41 146
Msa0102120 MtrunA17_Chr5g0430091 41.872 203 104 2 33 235 38 226 5.12e-40 144
Msa0102120 MtrunA17_Chr5g0430081 41.414 198 102 2 33 230 36 219 5.26e-40 144
Msa0102120 MtrunA17_Chr4g0058281 34.498 229 138 2 7 235 21 237 7.04e-40 143
Msa0102120 MtrunA17_Chr4g0047641 38.462 195 113 3 4 193 17 209 2.35e-39 142
Msa0102120 MtrunA17_Chr3g0086651 38.723 235 133 4 3 235 5 230 3.05e-39 142
Msa0102120 MtrunA17_Chr5g0430131 41.379 203 105 2 33 235 38 226 6.44e-39 140
Msa0102120 MtrunA17_Chr3g0086661 38.723 235 133 4 3 235 5 230 8.85e-39 140
Msa0102120 MtrunA17_Chr4g0047691 37.949 195 112 3 4 193 19 209 4.86e-38 138
Msa0102120 MtrunA17_Chr5g0430171 40.394 203 107 3 33 235 38 226 5.25e-38 132
Msa0102120 MtrunA17_Chr3g0086691 39.556 225 126 5 16 235 11 230 3.23e-37 136
Msa0102120 MtrunA17_Chr1g0174461 33.043 230 145 2 1 230 4 224 8.30e-37 135
Msa0102120 MtrunA17_Chr4g0058261 41.081 185 105 3 20 202 51 233 1.12e-36 135
Msa0102120 MtrunA17_Chr1g0174421 33.168 202 126 3 33 234 48 240 9.11e-36 129
Msa0102120 MtrunA17_Chr5g0405001 34.632 231 132 5 3 233 18 229 3.53e-35 130
Msa0102120 MtrunA17_Chr1g0174441 34.536 194 126 1 1 193 23 216 8.47e-35 130
Msa0102120 MtrunA17_Chr4g0061381 43.046 151 83 2 41 191 40 187 1.36e-34 129
Msa0102120 MtrunA17_Chr4g0035921 38.333 180 107 3 20 199 25 200 1.37e-34 129
Msa0102120 MtrunA17_Chr8g0344151 38.272 162 97 2 33 194 37 195 1.57e-33 126
Msa0102120 MtrunA17_Chr5g0431631 45.324 139 68 3 8 142 27 161 3.00e-33 117
Msa0102120 MtrunA17_Chr2g0310371 41.096 146 85 1 5 150 1 145 3.33e-33 117
Msa0102120 MtrunA17_Chr3g0084921 36.869 198 121 4 3 200 8 201 5.70e-33 124
Msa0102120 MtrunA17_Chr5g0395331 31.579 209 136 3 27 235 32 233 3.42e-32 122
Msa0102120 MtrunA17_Chr7g0254641 30.556 216 144 2 19 234 24 233 4.06e-31 119
Msa0102120 MtrunA17_Chr3g0117321 49.153 118 59 1 34 151 9 125 4.41e-31 111
Msa0102120 MtrunA17_Chr1g0174451 32.673 202 135 1 1 202 5 205 6.64e-31 119
Msa0102120 MtrunA17_Chr8g0356001 31.197 234 149 5 3 235 12 234 8.69e-31 118
Msa0102120 MtrunA17_Chr8g0344181 37.278 169 103 2 33 201 39 204 1.11e-30 118
Msa0102120 MtrunA17_Chr4g0030701 32.323 198 124 2 33 230 36 223 2.34e-30 117
Msa0102120 MtrunA17_Chr1g0160851 34.409 186 118 2 12 194 11 195 4.92e-30 116
Msa0102120 MtrunA17_Chr5g0401681 36.316 190 112 5 24 206 24 211 1.05e-29 115
Msa0102120 MtrunA17_Chr8g0355961 29.614 233 154 3 3 235 12 234 1.50e-29 115
Msa0102120 MtrunA17_Chr3g0101741 43.089 123 68 1 68 190 1 121 1.57e-29 114
Msa0102120 MtrunA17_Chr7g0258221 33.939 165 108 1 28 192 30 193 1.66e-29 115
Msa0102120 MtrunA17_Chr5g0395321 33.175 211 130 6 1 201 7 216 2.35e-29 115
Msa0102120 MtrunA17_Chr1g0174481 33.679 193 124 3 12 202 12 202 5.67e-29 113
Msa0102120 MtrunA17_Chr8g0344191 32.447 188 124 2 7 194 44 228 6.73e-29 113
Msa0102120 MtrunA17_Chr7g0258211 37.129 202 125 2 3 203 9 209 7.39e-29 113
Msa0102120 MtrunA17_Chr5g0395381 33.862 189 114 5 3 183 6 191 7.88e-29 112
Msa0102120 MtrunA17_Chr7g0255531 30.964 197 126 4 4 194 1 193 1.07e-28 112
Msa0102120 MtrunA17_Chr4g0046631 30.962 239 158 4 3 235 12 249 4.45e-28 111
Msa0102120 MtrunA17_Chr5g0401691 30.638 235 150 4 2 235 24 246 1.94e-27 109
Msa0102120 MtrunA17_Chr1g0205361 35.185 162 104 1 33 194 35 195 2.84e-27 108
Msa0102120 MtrunA17_Chr4g0046671 32.258 217 129 4 1 199 4 220 3.10e-27 106
Msa0102120 MtrunA17_Chr1g0200961 31.140 228 147 5 1 228 2 219 3.11e-27 108
Msa0102120 MtrunA17_Chr7g0246221 31.183 186 121 3 3 183 6 189 3.20e-27 108
Msa0102120 MtrunA17_Chr3g0094231 29.651 172 120 1 29 200 33 203 3.30e-27 108
Msa0102120 MtrunA17_Chr8g0339311 32.389 247 144 6 8 235 5 247 8.67e-27 107
Msa0102120 MtrunA17_Chr1g0205371 29.614 233 152 3 3 235 8 228 1.12e-26 107
Msa0102120 MtrunA17_Chr4g0046691 31.731 208 130 3 29 235 36 232 1.73e-26 104
Msa0102120 MtrunA17_Chr4g0046331 30.256 195 129 4 3 191 1 194 4.86e-26 105
Msa0102120 MtrunA17_Chr7g0265611 32.184 174 112 3 10 180 26 196 6.93e-26 105
Msa0102120 MtrunA17_Chr2g0304871 29.060 234 147 5 14 235 15 241 7.15e-26 105
Msa0102120 MtrunA17_Chr8g0339331 32.735 223 141 5 19 235 22 241 1.11e-25 104
Msa0102120 MtrunA17_Chr5g0430051 49.541 109 52 2 5 111 9 116 1.16e-25 97.1
Msa0102120 MtrunA17_Chr2g0314731 28.500 200 138 2 3 202 8 202 1.43e-25 103
Msa0102120 MtrunA17_Chr5g0402971 29.358 218 137 5 26 235 34 242 1.95e-25 101
Msa0102120 MtrunA17_Chr4g0057001 31.081 222 142 6 14 235 33 243 2.49e-25 103
Msa0102120 MtrunA17_Chr4g0039901 36.538 156 93 2 33 183 36 190 2.70e-25 103
Msa0102120 MtrunA17_Chr1g0207841 30.319 188 121 3 43 230 49 226 3.86e-25 102
Msa0102120 MtrunA17_Chr7g0235551 31.658 199 125 3 33 230 34 222 4.27e-25 102
Msa0102120 MtrunA17_Chr4g0046351 32.143 168 111 3 26 191 28 194 4.50e-25 102
Msa0102120 MtrunA17_Chr1g0174471 30.594 219 141 3 14 230 30 239 5.24e-25 102
Msa0102120 MtrunA17_Chr4g0052851 33.649 211 123 6 27 235 28 223 6.44e-25 102
Msa0102120 MtrunA17_Chr7g0224551 32.275 189 125 3 5 192 4 190 9.64e-25 101
Msa0102120 MtrunA17_Chr7g0224561 32.275 189 125 3 5 192 4 190 1.70e-24 101
Msa0102120 MtrunA17_Chr4g0046321 31.548 168 112 3 26 191 28 194 2.04e-24 100
Msa0102120 MtrunA17_Chr1g0164211 31.847 157 106 1 33 189 32 187 2.74e-24 100
Msa0102120 MtrunA17_Chr4g0052861 28.692 237 162 5 1 235 1 232 3.86e-24 100
Msa0102120 MtrunA17_Chr7g0246131 29.032 186 124 3 3 183 7 189 3.97e-24 100
Msa0102120 MtrunA17_Chr8g0351801 36.364 165 97 4 42 201 44 205 5.74e-24 99.8
Msa0102120 MtrunA17_Chr6g0458561 31.064 235 146 6 10 235 30 257 1.15e-23 99.0
Msa0102120 MtrunA17_Chr6g0484771 38.400 125 77 0 68 192 1 125 2.25e-23 92.0
Msa0102120 MtrunA17_Chr4g0030741 33.133 166 104 3 41 206 73 231 2.37e-23 96.7
Msa0102120 MtrunA17_Chr4g0030711 29.101 189 122 3 43 230 48 225 4.56e-23 97.1
Msa0102120 MtrunA17_Chr4g0017411 37.342 158 95 3 27 183 25 179 4.74e-23 97.1
Msa0102120 MtrunA17_Chr1g0207851 29.787 188 121 4 43 230 49 225 6.81e-23 95.1
Msa0102120 MtrunA17_Chr4g0053621 30.918 207 128 5 5 202 8 208 6.89e-23 96.7
Msa0102120 MtrunA17_Chr5g0431601 48.193 83 42 1 68 150 1 82 7.08e-23 88.6
Msa0102120 MtrunA17_Chr3g0094171 30.189 159 110 1 33 191 41 198 1.45e-22 95.5
Msa0102120 MtrunA17_Chr6g0451691 27.957 186 121 3 28 200 37 222 2.91e-22 94.7
Msa0102120 MtrunA17_Chr4g0039391 34.343 198 120 6 41 235 44 234 4.73e-22 94.0
Msa0102120 MtrunA17_Chr6g0451741 29.000 200 130 4 4 193 34 231 8.25e-22 93.6
Msa0102120 MtrunA17_Chr2g0314721 35.385 130 83 1 33 162 45 173 2.25e-21 92.0
Msa0102120 MtrunA17_Chr1g0176831 30.000 160 107 2 3 162 38 192 3.83e-21 91.7
Msa0102120 MtrunA17_Chr5g0445541 48.515 101 44 3 8 104 15 111 6.70e-21 85.1
Msa0102120 MtrunA17_Chr8g0362701 31.206 141 97 0 53 193 55 195 9.84e-21 90.5
Msa0102120 MtrunA17_Chr6g0451641 28.079 203 133 4 1 196 13 209 1.14e-20 90.1
Msa0102120 MtrunA17_Chr6g0451751 27.638 199 132 4 5 193 16 212 1.51e-20 89.7
Msa0102120 MtrunA17_Chr4g0052881 26.471 238 167 5 1 235 1 233 2.12e-20 89.4
Msa0102120 MtrunA17_Chr5g0445341 46.988 83 43 1 68 149 1 83 2.93e-20 82.0
Msa0102120 MtrunA17_Chr5g0432751 27.354 223 145 7 18 235 21 231 5.32e-20 88.2
Msa0102120 MtrunA17_Chr6g0466901 26.891 238 162 5 5 235 8 240 6.43e-20 87.8
Msa0102120 MtrunA17_Chr1g0213671 25.628 199 141 3 33 227 35 230 8.51e-20 87.8
Msa0102120 MtrunA17_Chr1g0197881 29.114 158 108 3 6 160 4 160 9.20e-20 87.4
Msa0102120 MtrunA17_Chr6g0451781 29.148 223 143 4 21 235 66 281 1.03e-19 87.4
Msa0102120 MtrunA17_Chr3g0082701 31.210 157 107 1 5 160 12 168 1.37e-19 87.0
Msa0102120 MtrunA17_Chr6g0466941 32.051 156 101 2 6 160 12 163 1.65e-19 86.7
Msa0102120 MtrunA17_Chr6g0451801 26.582 237 163 3 7 235 14 247 4.54e-19 84.3
Msa0102120 MtrunA17_Chr7g0246121 34.091 176 114 2 3 178 6 179 7.22e-19 84.7
Msa0102120 MtrunA17_Chr1g0197851 29.139 151 102 2 14 160 12 161 8.12e-19 84.7
Msa0102120 MtrunA17_Chr6g0451681 29.530 149 104 1 13 160 42 190 8.67e-19 84.7
Msa0102120 MtrunA17_Chr4g0056951 32.143 196 115 4 44 235 56 237 1.19e-18 84.3
Msa0102120 MtrunA17_Chr8g0362481 29.927 137 91 1 68 199 1 137 1.56e-18 83.6
Msa0102120 MtrunA17_Chr4g0008101 28.000 200 131 4 4 193 14 210 2.43e-18 83.6
Msa0102120 MtrunA17_Chr2g0296651 29.004 231 155 5 7 235 9 232 3.72e-18 82.8
Msa0102120 MtrunA17_Chr3g0105751 29.775 178 117 4 1 173 18 192 5.19e-18 82.0
Msa0102120 MtrunA17_Chr1g0197891 30.769 130 89 1 33 162 35 163 5.55e-18 82.4
Msa0102120 MtrunA17_Chr1g0197871 28.302 159 109 3 8 162 6 163 7.20e-18 82.0
Msa0102120 MtrunA17_Chr7g0246181 31.720 186 120 3 3 183 6 189 7.49e-18 82.0
Msa0102120 MtrunA17_Chr7g0246151 31.507 146 94 2 43 183 45 189 1.23e-17 81.3
Msa0102120 MtrunA17_Chr2g0296661 29.442 197 129 4 44 235 44 235 1.53e-17 80.9
Msa0102120 MtrunA17_Chr3g0107611 26.633 199 132 5 4 193 23 216 1.71e-16 78.2
Msa0102120 MtrunA17_Chr4g0076181 44.286 70 39 0 68 137 1 70 1.85e-16 74.3
Msa0102120 MtrunA17_Chr5g0419451 28.311 219 130 10 24 235 52 250 2.94e-16 77.4
Msa0102120 MtrunA17_Chr1g0198191 26.036 169 122 2 5 170 18 186 4.41e-16 76.6
Msa0102120 MtrunA17_Chr1g0210091 30.833 120 83 0 41 160 74 193 1.70e-15 75.1
Msa0102120 MtrunA17_Chr2g0314771 25.185 135 101 0 68 202 1 135 2.69e-14 68.2
Msa0102120 MtrunA17_Chr3g0107561 28.144 167 107 4 3 157 7 172 2.92e-14 70.9
Msa0102120 MtrunA17_Chr8g0370641 24.498 249 171 7 1 235 1 246 3.46e-14 71.2
Msa0102120 MtrunA17_Chr8g0346261 26.829 205 135 7 34 235 86 278 4.53e-14 70.9
Msa0102120 MtrunA17_Chr8g0370651 25.275 182 131 2 24 200 36 217 1.70e-12 66.2
Msa0102120 MtrunA17_Chr2g0280001 29.012 162 100 4 9 160 38 194 2.62e-12 63.9
Msa0102120 MtrunA17_Chr1g0176861 37.500 88 50 2 3 90 12 94 4.57e-12 60.5
Msa0102120 MtrunA17_Chr2g0280051 28.025 157 108 3 9 160 48 204 8.64e-12 63.5
Msa0102120 MtrunA17_Chr2g0280071 25.664 226 153 7 9 227 38 255 9.38e-12 64.3
Msa0102120 MtrunA17_Chr2g0334021 26.570 207 143 5 34 235 37 239 1.90e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102120 AT3G26300.1 44.395 223 113 4 12 233 10 222 3.88e-60 197
Msa0102120 AT3G26320.1 44.595 222 109 3 12 233 15 222 1.01e-55 185
Msa0102120 AT3G26330.1 45.894 207 102 2 27 233 26 222 4.54e-55 184
Msa0102120 AT5G57260.1 45.933 209 103 2 25 233 23 221 4.57e-55 184
Msa0102120 AT3G26310.1 41.558 231 121 4 3 233 5 221 2.82e-54 182
Msa0102120 AT4G31500.1 39.912 228 128 2 6 233 3 221 2.29e-52 176
Msa0102120 AT3G48290.1 50.867 173 82 3 21 193 22 191 2.85e-52 176
Msa0102120 AT3G48290.2 50.867 173 82 3 21 193 22 191 4.98e-52 176
Msa0102120 AT2G02580.1 45.259 232 115 4 4 233 1 222 6.48e-52 175
Msa0102120 AT3G26290.1 43.000 200 104 2 34 233 33 222 2.41e-51 174
Msa0102120 AT3G26290.2 43.000 200 104 2 34 233 46 235 3.60e-51 174
Msa0102120 AT1G13090.1 43.137 204 105 3 33 235 29 222 1.21e-49 164
Msa0102120 AT3G48270.1 50.282 177 83 3 28 202 27 200 1.54e-49 169
Msa0102120 AT3G48280.1 43.979 191 103 3 3 193 2 188 5.81e-49 167
Msa0102120 AT3G48320.1 42.661 218 116 4 1 218 1 209 1.24e-48 166
Msa0102120 AT1G13090.2 43.137 204 105 3 33 235 29 222 1.53e-47 164
Msa0102120 AT3G53280.1 41.379 203 106 5 33 233 29 220 8.57e-47 162
Msa0102120 AT4G13770.1 34.934 229 139 2 5 233 4 222 1.04e-46 162
Msa0102120 AT4G13310.2 40.465 215 113 4 24 235 24 226 1.25e-46 159
Msa0102120 AT1G13080.1 42.609 230 123 3 5 233 3 224 4.06e-46 160
Msa0102120 AT4G13310.1 40.465 215 113 4 24 235 24 226 1.18e-45 159
Msa0102120 AT3G48310.1 48.193 166 83 3 28 193 28 190 1.91e-45 158
Msa0102120 AT1G13110.1 38.197 233 129 5 5 233 3 224 2.00e-45 158
Msa0102120 AT3G26190.1 40.594 202 109 3 33 233 29 220 5.52e-45 157
Msa0102120 AT1G11610.1 40.887 203 109 3 33 235 34 225 6.66e-45 157
Msa0102120 AT1G11610.2 40.887 203 109 3 33 235 34 225 7.20e-45 157
Msa0102120 AT3G26170.1 37.391 230 133 4 7 234 3 223 2.56e-44 155
Msa0102120 AT3G26200.1 43.564 202 103 4 33 233 29 220 3.92e-44 155
Msa0102120 AT3G26280.1 40.807 223 119 5 11 233 14 223 5.29e-44 154
Msa0102120 AT3G44250.1 40.686 204 107 4 33 233 29 221 5.56e-44 154
Msa0102120 AT5G25140.1 35.652 230 136 3 7 235 3 221 5.60e-44 154
Msa0102120 AT3G26280.2 40.807 223 119 5 11 233 31 240 5.62e-44 155
Msa0102120 AT5G25130.1 35.193 233 136 3 3 235 4 221 8.22e-44 154
Msa0102120 AT3G48300.1 46.199 171 87 3 34 202 31 198 1.42e-43 153
Msa0102120 AT3G48300.2 46.199 171 87 3 34 202 33 200 1.47e-43 153
Msa0102120 AT2G30770.1 40.394 203 110 3 33 235 34 225 4.88e-43 152
Msa0102120 AT4G20240.2 43.258 178 93 3 27 200 24 197 6.78e-43 149
Msa0102120 AT3G26830.1 37.826 230 130 4 5 233 3 220 1.56e-42 150
Msa0102120 AT5G25120.1 35.981 214 125 3 23 235 19 221 2.10e-42 150
Msa0102120 AT4G20240.1 43.275 171 92 2 27 193 24 193 4.59e-42 148
Msa0102120 AT3G26180.1 39.604 202 113 2 33 234 31 223 6.11e-42 149
Msa0102120 AT4G13290.1 44.172 163 88 2 33 193 34 195 1.17e-41 148
Msa0102120 AT5G42590.1 41.969 193 111 1 1 193 1 192 2.55e-40 144
Msa0102120 AT5G24950.1 39.080 174 100 2 33 201 33 205 3.73e-40 144
Msa0102120 AT5G25180.1 35.043 234 134 4 3 235 5 221 5.29e-40 144
Msa0102120 AT3G26270.1 37.443 219 121 5 18 234 20 224 5.43e-40 144
Msa0102120 AT2G24180.1 37.681 207 119 2 27 233 31 227 3.48e-39 142
Msa0102120 AT3G26210.1 40.415 193 106 3 41 233 40 223 7.96e-39 140
Msa0102120 AT2G30750.1 40.376 213 116 3 23 235 24 225 1.08e-38 140
Msa0102120 AT3G26160.1 36.752 234 137 4 1 234 1 223 1.11e-38 140
Msa0102120 AT3G26220.1 41.361 191 108 3 1 191 1 187 2.90e-38 139
Msa0102120 AT1G13100.1 38.144 194 106 3 41 233 37 217 2.68e-37 136
Msa0102120 AT5G24960.2 40.373 161 95 1 33 193 34 193 5.22e-37 134
Msa0102120 AT3G26150.1 34.615 234 142 3 1 234 1 223 2.20e-36 134
Msa0102120 AT5G24960.1 40.373 161 95 1 33 193 34 193 3.43e-36 133
Msa0102120 AT5G07990.1 35.622 233 133 6 9 235 5 226 1.66e-35 132
Msa0102120 AT5G06900.1 32.911 237 146 3 4 235 1 229 1.94e-35 131
Msa0102120 AT3G53300.1 38.119 202 114 3 33 233 29 220 1.08e-34 129
Msa0102120 AT3G26230.1 37.555 229 129 5 5 233 3 217 2.00e-34 129
Msa0102120 AT2G40890.1 33.161 193 123 3 7 194 1 192 1.37e-30 118
Msa0102120 AT2G45560.3 32.394 213 132 3 2 213 8 209 2.05e-30 113
Msa0102120 AT2G45560.2 34.392 189 122 2 2 189 8 195 6.96e-30 114
Msa0102120 AT5G06905.1 36.216 185 115 3 8 191 7 189 9.32e-30 116
Msa0102120 AT5G04330.1 40.506 158 90 3 33 190 33 186 2.47e-29 115
Msa0102120 AT2G45560.1 34.392 189 122 2 2 189 8 195 6.48e-29 114
Msa0102120 AT4G36220.1 37.086 151 91 3 40 190 48 194 1.60e-28 112
Msa0102120 AT4G12320.1 32.189 233 146 3 7 235 13 237 2.28e-28 112
Msa0102120 AT1G01280.1 35.417 192 122 2 3 193 2 192 2.53e-27 109
Msa0102120 AT4G12300.1 31.707 205 132 2 31 235 41 237 9.12e-27 107
Msa0102120 AT2G45550.1 32.804 189 125 2 2 189 8 195 9.81e-27 107
Msa0102120 AT1G74550.1 36.066 183 111 3 13 193 8 186 1.59e-26 107
Msa0102120 AT4G37430.1 31.707 205 128 5 9 203 6 208 1.92e-26 107
Msa0102120 AT3G52970.2 31.609 174 110 3 12 185 21 185 5.52e-26 105
Msa0102120 AT4G15360.1 27.632 228 150 2 8 229 10 228 8.22e-26 105
Msa0102120 AT3G52970.1 28.729 181 123 2 12 191 21 196 1.02e-25 105
Msa0102120 AT4G37330.1 32.195 205 129 6 4 203 6 205 1.41e-25 104
Msa0102120 AT1G74540.1 32.673 202 121 5 6 200 5 198 3.19e-25 103
Msa0102120 AT3G25180.2 35.263 190 118 3 7 191 10 199 2.65e-24 100
Msa0102120 AT4G31970.1 28.632 234 158 3 9 235 9 240 4.33e-24 100
Msa0102120 AT4G22710.1 33.484 221 138 4 16 235 37 249 4.59e-24 100
Msa0102120 AT5G57220.1 28.646 192 134 3 6 196 4 193 6.04e-24 99.8
Msa0102120 AT2G27000.1 33.152 184 114 3 43 226 50 224 9.13e-24 99.4
Msa0102120 AT3G25180.1 35.263 190 118 3 7 191 10 199 1.10e-23 99.4
Msa0102120 AT5G35715.1 35.329 167 98 2 68 233 1 158 1.17e-23 98.6
Msa0102120 AT3G20940.1 29.952 207 136 3 22 228 32 229 1.22e-23 99.0
Msa0102120 AT4G37320.1 33.171 205 126 7 4 202 6 205 1.29e-23 99.0
Msa0102120 AT2G45570.1 36.170 188 114 3 3 189 13 195 2.07e-23 98.6
Msa0102120 AT5G10600.1 32.164 171 115 1 33 202 47 217 2.58e-23 98.2
Msa0102120 AT4G22690.1 32.735 223 141 4 14 235 66 280 3.12e-23 98.2
Msa0102120 AT5G36220.1 33.488 215 130 6 4 211 8 216 3.25e-23 97.8
Msa0102120 AT5G10610.1 32.948 173 116 0 30 202 30 202 3.49e-23 97.8
Msa0102120 AT3G20140.1 29.665 209 138 2 22 230 32 231 3.95e-23 97.4
Msa0102120 AT4G31940.1 30.208 192 127 3 9 193 9 200 4.50e-23 97.4
Msa0102120 AT3G20110.1 31.053 190 130 1 4 193 12 200 6.86e-23 97.1
Msa0102120 AT3G32047.1 30.088 226 148 3 4 229 15 230 7.02e-23 96.7
Msa0102120 AT2G42250.1 35.000 160 103 1 29 188 38 196 1.04e-22 96.3
Msa0102120 AT3G20130.1 30.366 191 124 2 39 229 49 230 1.22e-22 96.3
Msa0102120 AT2G23190.1 33.333 177 111 5 33 204 76 250 2.25e-22 95.5
Msa0102120 AT3G26180.2 54.762 84 37 1 33 116 31 113 2.34e-22 94.4
Msa0102120 AT3G20950.1 28.821 229 150 2 3 227 13 232 2.57e-22 95.5
Msa0102120 AT1G50520.1 36.129 155 97 1 39 191 50 204 2.83e-22 95.1
Msa0102120 AT4G20235.1 35.443 158 97 2 4 157 3 159 3.37e-22 93.6
Msa0102120 AT4G37410.1 30.653 199 132 4 10 203 8 205 4.73e-22 94.4
Msa0102120 AT3G20090.2 29.386 228 145 3 9 229 13 231 7.40e-22 94.0
Msa0102120 AT1G33720.1 33.152 184 113 4 13 189 15 195 8.45e-22 94.0
Msa0102120 AT4G37370.1 31.373 204 132 5 12 211 10 209 1.29e-21 93.2
Msa0102120 AT2G14100.1 31.416 226 143 4 5 229 17 231 1.90e-21 92.8
Msa0102120 AT2G25160.2 28.689 244 152 7 4 235 6 239 3.31e-21 91.7
Msa0102120 AT3G61040.2 32.955 176 116 2 24 199 25 198 3.86e-21 91.3
Msa0102120 AT4G12310.1 30.769 195 127 2 41 235 53 239 4.53e-21 91.7
Msa0102120 AT5G44620.1 32.468 231 144 5 7 235 21 241 6.70e-21 91.3
Msa0102120 AT2G25160.1 28.689 244 152 7 4 235 6 239 6.87e-21 91.3
Msa0102120 AT5G67310.1 30.435 207 135 6 1 201 12 215 6.98e-21 91.3
Msa0102120 AT4G37360.1 29.707 239 153 7 2 235 3 231 7.98e-21 90.9
Msa0102120 AT3G61040.1 32.955 176 116 2 24 199 25 198 9.38e-21 90.9
Msa0102120 AT4G37340.1 29.412 238 155 6 2 235 3 231 1.43e-20 90.1
Msa0102120 AT2G23220.1 32.474 194 123 6 33 221 47 237 1.64e-20 90.1
Msa0102120 AT3G53305.1 34.839 155 91 2 68 221 1 146 3.05e-20 88.2
Msa0102120 AT3G10560.1 31.220 205 119 6 9 200 19 214 6.09e-20 88.6
Msa0102120 AT5G04630.1 25.532 235 160 5 6 230 11 240 1.82e-19 87.0
Msa0102120 AT2G05180.1 29.843 191 125 2 39 229 48 229 4.00e-19 85.9
Msa0102120 AT3G20080.2 32.749 171 115 0 22 192 32 202 4.11e-19 85.9
Msa0102120 AT3G20080.1 32.749 171 115 0 22 192 32 202 4.11e-19 85.9
Msa0102120 AT4G37400.1 31.902 163 103 4 46 203 44 203 4.89e-19 85.9
Msa0102120 AT3G53290.1 34.899 149 87 2 86 233 11 150 5.71e-19 85.1
Msa0102120 AT3G20100.1 31.414 191 122 2 39 229 48 229 7.33e-19 85.5
Msa0102120 AT5G42580.1 28.333 180 120 2 53 232 60 230 1.45e-18 84.3
Msa0102120 AT4G37310.1 28.448 232 151 7 3 231 5 224 2.86e-18 83.6
Msa0102120 AT4G12330.1 26.396 197 136 4 41 235 55 244 7.07e-18 82.4
Msa0102120 AT4G15330.1 27.638 199 135 2 34 232 40 229 9.62e-18 82.0
Msa0102120 AT4G15350.1 29.798 198 115 7 43 232 45 226 1.10e-17 82.0
Msa0102120 AT3G28740.1 34.091 176 111 4 28 199 35 209 1.62e-17 81.3
Msa0102120 AT2G45580.3 30.357 168 113 2 26 190 29 195 1.82e-16 78.2
Msa0102120 AT2G45580.1 29.730 148 103 1 42 189 48 194 2.35e-16 78.2
Msa0102120 AT1G13710.1 28.708 209 124 9 34 235 55 245 3.56e-15 74.7
Msa0102120 AT5G47990.1 30.481 187 123 1 13 192 16 202 4.62e-15 74.3
Msa0102120 AT3G20120.4 30.968 155 107 0 39 193 48 202 6.69e-15 73.9
Msa0102120 AT5G09970.1 25.726 241 152 8 9 235 37 264 7.36e-15 73.6
Msa0102120 AT1G50560.1 33.758 157 101 1 39 192 50 206 7.82e-15 73.6
Msa0102120 AT3G20960.2 28.761 226 150 3 4 229 15 229 7.97e-14 70.5
Msa0102120 AT5G05260.2 27.979 193 122 5 25 206 33 219 2.58e-13 68.9
Msa0102120 AT5G05260.1 27.979 193 122 5 25 206 33 219 2.65e-13 68.9
Msa0102120 AT1G28430.1 26.667 180 126 1 39 218 47 220 4.63e-13 68.6
Msa0102120 AT3G61880.1 25.352 213 143 7 27 235 61 261 5.98e-13 68.2
Msa0102120 AT3G61880.2 25.352 213 143 7 27 235 61 261 6.99e-13 67.8
Msa0102120 AT1G16410.2 20.000 225 174 3 3 222 16 239 7.12e-13 67.8
Msa0102120 AT1G16410.1 20.000 225 174 3 3 222 16 239 8.65e-13 67.4
Msa0102120 AT4G15380.1 29.032 217 139 3 15 230 24 226 1.19e-12 67.0
Msa0102120 AT5G04660.1 30.973 113 77 1 59 170 70 182 6.74e-12 65.1
Msa0102120 AT5G35917.1 26.106 226 150 6 23 235 33 254 2.09e-11 63.5
Msa0102120 AT2G30490.1 24.378 201 139 5 39 235 40 231 2.42e-11 63.2
Msa0102120 AT3G10570.1 26.230 183 117 5 44 217 55 228 4.22e-11 62.4
Msa0102120 AT4G31950.1 25.000 236 153 5 9 235 9 229 4.86e-11 62.4
Msa0102120 AT1G16400.1 20.264 227 173 4 1 222 15 238 9.52e-11 61.6

Find 108 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGGTTTCATTTGTAATT+TGG 0.099750 1_3:+8838819 Msa0102120:three_prime_UTR
CCAAAACCACTTCCTCTAAT+TGG 0.228537 1_3:+8837102 Msa0102120:CDS
CCAATTAGAGGAAGTGGTTT+TGG 0.233533 1_3:-8837102 None:intergenic
ATGAGTTCAGTGGATATTAA+AGG 0.244095 1_3:+8838495 Msa0102120:three_prime_UTR
TATAATGTTAACTTGTATTC+TGG 0.247286 1_3:+8838889 Msa0102120:three_prime_UTR
TGGCACCTTATAGTCCTTAT+TGG 0.248401 1_3:+8837349 Msa0102120:CDS
ATTATATGTAAGATAGCTTT+TGG 0.253407 1_3:+8837543 Msa0102120:CDS
GAACTCATAAAGAACCTTTC+AGG 0.272290 1_3:-8838480 None:intergenic
AATGGTTTCATTTGTAATTT+GGG 0.282865 1_3:+8838820 Msa0102120:three_prime_UTR
CTTTCAGGATAAAACTCTTC+AGG 0.287297 1_3:-8838465 None:intergenic
ATCTCTAGATCAATTGATAA+TGG 0.295894 1_3:+8838802 Msa0102120:three_prime_UTR
ATGGTCTACTTGCAAATTTA+AGG 0.306190 1_3:-8837278 None:intergenic
CCACATCAAAGCTGTTCTTA+TGG 0.311590 1_3:+8837909 Msa0102120:three_prime_UTR
CATGATAGGTCCATATTGTT+TGG 0.317342 1_3:-8837178 None:intergenic
CAATATCATGGTGATATAAA+AGG 0.320291 1_3:+8837480 Msa0102120:CDS
ATCTTCTTCACTCCTTTGAT+TGG 0.323846 1_3:+8838610 Msa0102120:three_prime_UTR
ATTGATCTTTACCTTGTTCC+TGG 0.325534 1_3:+8838708 Msa0102120:three_prime_UTR
TTTCTCATCTCTCTCCAATA+AGG 0.331081 1_3:-8837363 None:intergenic
TTATGAAGAAGAAGTTGAAT+TGG 0.335826 1_3:+8837584 Msa0102120:CDS
TCTCTCCAATAAGGACTATA+AGG 0.342075 1_3:-8837354 None:intergenic
TTCTTATGCATAGTTATTCC+TGG 0.357766 1_3:-8838684 None:intergenic
TGGTGTAAATTTCCAATTAG+AGG 0.373198 1_3:-8837114 None:intergenic
TGGCAACTCTCCAAACAATA+TGG 0.375218 1_3:+8837168 Msa0102120:CDS
AAGTTCAGCAATAGTGGTTT+GGG 0.382977 1_3:+8838158 Msa0102120:three_prime_UTR
CAAGTTCAGCAATAGTGGTT+TGG 0.384613 1_3:+8838157 Msa0102120:three_prime_UTR
TGTTAACTTATATTCTTCCT+AGG 0.389937 1_3:+8839008 Msa0102120:three_prime_UTR
TATGAAGAAGAAGTTGAATT+GGG 0.393775 1_3:+8837585 Msa0102120:CDS
TAGGATCATCATTGATCTCT+TGG 0.403013 1_3:+8839027 Msa0102120:three_prime_UTR
CAACTTTCTATTGTTTCTCT+TGG 0.403204 1_3:-8838354 None:intergenic
GTTATAGTCAAAGGAACTCT+TGG 0.405795 1_3:+8837698 Msa0102120:exon
GATATAGTCAAAGGAACTCT+TGG 0.409942 1_3:+8837724 Msa0102120:three_prime_UTR
AGTGGTCATCAATAACTCTT+TGG 0.413839 1_3:-8837786 None:intergenic
CTTGGATAATTCAGCAAGTA+AGG 0.416389 1_3:+8837807 Msa0102120:three_prime_UTR
CTCGAATAGGCCTAAAAGAA+TGG 0.416856 1_3:-8837422 None:intergenic
TGATAAAACCTTCAAGGAGT+TGG 0.417361 1_3:+8837753 Msa0102120:three_prime_UTR
TGAGTTCAGTGGATATTAAA+GGG 0.417759 1_3:+8838496 Msa0102120:three_prime_UTR
TTTCTTAGTCCAAGAAAAGA+TGG 0.422206 1_3:-8837297 None:intergenic
TACTTGCAAATTTAAGGTCA+TGG 0.422445 1_3:-8837272 None:intergenic
TCAGGGTCATTCCAATTCTC+AGG 0.432175 1_3:-8838447 None:intergenic
ATTCTTCTTCCACTTCCAAA+TGG 0.433596 1_3:-8838537 None:intergenic
TAGGAAGGGATCCTGAGAAT+TGG 0.433597 1_3:+8838436 Msa0102120:three_prime_UTR
AGTGATGAACAAGGTTCAAA+TGG 0.433942 1_3:+8838209 Msa0102120:three_prime_UTR
AGACACAAGTTCAGCAATAG+TGG 0.439261 1_3:+8838152 Msa0102120:three_prime_UTR
CAATGGTTTAGATCTTGCTT+TGG 0.440992 1_3:+8837329 Msa0102120:CDS
TAGAGATAATAGAAACTTTG+AGG 0.441970 1_3:-8838786 None:intergenic
TTTCAGGATAAAACTCTTCA+GGG 0.442471 1_3:-8838464 None:intergenic
AGGGATTGATGTGGGGATGA+AGG 0.442625 1_3:-8837144 None:intergenic
GTTTCTCTTGGTACTAGTAA+TGG 0.452389 1_3:-8838342 None:intergenic
ATAGAAAGTTGTAACATAGA+TGG 0.453168 1_3:+8838366 Msa0102120:three_prime_UTR
TTGATCTTTACCTTGTTCCT+GGG 0.459167 1_3:+8838709 Msa0102120:three_prime_UTR
TTCACCACTACTTTAAGATA+AGG 0.463189 1_3:-8838291 None:intergenic
CTCTAGTCTATGTTAATGCA+TGG 0.465988 1_3:+8838409 Msa0102120:three_prime_UTR
TATCAAATCCAACTCCTTGA+AGG 0.469726 1_3:-8837761 None:intergenic
ACAACTCCCATGTTCATTGC+AGG 0.478233 1_3:-8838564 None:intergenic
ACTTGCAAATTTAAGGTCAT+GGG 0.478309 1_3:-8837271 None:intergenic
GAGGCTTGATAAAACCTTCA+AGG 0.482193 1_3:+8837747 Msa0102120:three_prime_UTR
TTTGATTGGAATCTGCCTCA+TGG 0.486217 1_3:+8838624 Msa0102120:three_prime_UTR
CAATTTGTAAGGTTTCATCA+TGG 0.492254 1_3:+8836978 None:intergenic
AAATTTCCAATTAGAGGAAG+TGG 0.497288 1_3:-8837108 None:intergenic
AATTTGTAAGGTTTCATCAT+GGG 0.504832 1_3:+8836979 None:intergenic
TGAACCTTGTTCATCACTCT+AGG 0.512572 1_3:-8838204 None:intergenic
TATGTTAATGCATGGGCCAT+AGG 0.513967 1_3:+8838417 Msa0102120:three_prime_UTR
AGTTCCTTTGACTATAACAA+TGG 0.514753 1_3:-8837693 None:intergenic
ATATAGTCAAAGGAACTCTT+GGG 0.514768 1_3:+8837725 Msa0102120:three_prime_UTR
CTAAGAAAATTGTCTTACAA+TGG 0.520498 1_3:+8837312 Msa0102120:CDS
GAAGAAGTTGAATTGGGAAG+TGG 0.521793 1_3:+8837591 Msa0102120:CDS
CAAAACTTGTCACAATATCA+TGG 0.522215 1_3:+8837468 Msa0102120:CDS
GGGATTGATGTGGGGATGAA+GGG 0.524008 1_3:-8837143 None:intergenic
GAGTCGGATAAAATCACAAT+GGG 0.525876 1_3:-8838923 None:intergenic
AAGAGATCAATGATGATCCT+AGG 0.529595 1_3:-8839025 None:intergenic
GTGGGGATGAAGGGTCAAGC+TGG 0.530527 1_3:-8837134 None:intergenic
CATCCCCACATCAATCCCTA+TGG 0.540620 1_3:+8837148 Msa0102120:CDS
GTTACCTTATCTTAAAGTAG+TGG 0.541291 1_3:+8838287 Msa0102120:three_prime_UTR
ATAATGCATAGAATTAAGAT+TGG 0.542165 1_3:-8837027 None:intergenic
GCTGAGGAAACAACCAAGGT+TGG 0.543368 1_3:-8837222 None:intergenic
ATTCTCAGGATCCCTTCCTA+TGG 0.543623 1_3:-8838433 None:intergenic
GGACGCGTTGAGAGCTAAAG+AGG 0.553076 1_3:-8837401 None:intergenic
GAGTTAATTCCATTTGGAAG+TGG 0.554142 1_3:+8838528 Msa0102120:three_prime_UTR
ATTTGTAAGGTTTCATCATG+GGG 0.554770 1_3:+8836980 None:intergenic
TTAATGCATGGGCCATAGGA+AGG 0.557501 1_3:+8838421 Msa0102120:three_prime_UTR
AAGGTTCTTTATGAGTTCAG+TGG 0.559340 1_3:+8838485 Msa0102120:three_prime_UTR
ATTGTTTGGAGAGTTGCCAT+AGG 0.562903 1_3:-8837164 None:intergenic
TTGTTTGGAGAGTTGCCATA+GGG 0.564933 1_3:-8837163 None:intergenic
CCTTGGCTATGTACCAACCT+TGG 0.572745 1_3:+8837209 Msa0102120:CDS
TCTAGTCTATGTTAATGCAT+GGG 0.580372 1_3:+8838410 Msa0102120:three_prime_UTR
CTTGGTACTAGTAATGGTGA+TGG 0.590428 1_3:-8838336 None:intergenic
ATGAGGCAGATTCCAATCAA+AGG 0.595398 1_3:-8838622 None:intergenic
AAGAGTTATTGATGACCACT+TGG 0.596632 1_3:+8837789 Msa0102120:three_prime_UTR
TCTTGGATTGATATAGTCAA+AGG 0.597039 1_3:+8837715 Msa0102120:three_prime_UTR
AATGTGTCCTGCAATGAACA+TGG 0.600228 1_3:+8838557 Msa0102120:three_prime_UTR
TAATGCATGGGCCATAGGAA+GGG 0.620732 1_3:+8838422 Msa0102120:three_prime_UTR
TAGAAAGTAAACTCTTGAGT+CGG 0.623208 1_3:-8838939 None:intergenic
AGAGCATCATCAACTCCACC+AGG 0.630698 1_3:+8837078 Msa0102120:CDS
CCATAAGAACAGCTTTGATG+TGG 0.642871 1_3:-8837909 None:intergenic
GGTACTAGTAATGGTGATGG+TGG 0.646012 1_3:-8838333 None:intergenic
CCAAGGTTGGTACATAGCCA+AGG 0.647279 1_3:-8837209 None:intergenic
AGTTGCCATAGGGATTGATG+TGG 0.648246 1_3:-8837153 None:intergenic
TACTTGCTGAATTATCCAAG+TGG 0.650933 1_3:-8837804 None:intergenic
CAATCCTAGAGTGATGAACA+AGG 0.651550 1_3:+8838200 Msa0102120:three_prime_UTR
CGCGTTGAGAGCTAAAGAGG+TGG 0.653917 1_3:-8837398 None:intergenic
TGAGTCGGATAAAATCACAA+TGG 0.658101 1_3:-8838924 None:intergenic
GCCTATTCGAGAAAATGAAG+TGG 0.661005 1_3:+8837434 Msa0102120:CDS
TTGGATACAAAAGTGAAACC+AGG 0.661870 1_3:+8838666 Msa0102120:three_prime_UTR
GTTGCCATAGGGATTGATGT+GGG 0.665074 1_3:-8837152 None:intergenic
TAGTCAAAGGAACTCTTGGG+AGG 0.665989 1_3:+8837728 Msa0102120:three_prime_UTR
TTGCCATAGGGATTGATGTG+GGG 0.717475 1_3:-8837151 None:intergenic
TGTTCCTTGTCAAAACCATG+AGG 0.719052 1_3:-8838639 None:intergenic
ATGTGTCCTGCAATGAACAT+GGG 0.730584 1_3:+8838558 Msa0102120:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGAATTGAAAAAATTA+TGG + chr1_3:8837999-8838018 Msa0102120:intron 10.0%
!!! ATTTAGAATTGAAAAAATTA+TGG + chr1_3:8837999-8838018 Msa0102120:intron 10.0%
!! ATGACTTATTTAAAAAATTG+AGG - chr1_3:8837965-8837984 None:intergenic 15.0%
!! ATGACTTATTTAAAAAATTG+AGG - chr1_3:8837965-8837984 None:intergenic 15.0%
!! ATAATGCATAGAATTAAGAT+TGG - chr1_3:8837030-8837049 None:intergenic 20.0%
!!! ATTATATGTAAGATAGCTTT+TGG + chr1_3:8837543-8837562 Msa0102120:CDS 20.0%
!! GATTAATATCTAAGTTTATG+TGG + chr1_3:8838078-8838097 Msa0102120:intron 20.0%
!!! AATTTTGAGTTAATTCCATT+TGG + chr1_3:8838522-8838541 Msa0102120:three_prime_UTR 20.0%
!! TAATGGTTTCATTTGTAATT+TGG + chr1_3:8838819-8838838 Msa0102120:three_prime_UTR 20.0%
!! AATGGTTTCATTTGTAATTT+GGG + chr1_3:8838820-8838839 Msa0102120:three_prime_UTR 20.0%
!!! TATAATGTTAACTTGTATTC+TGG + chr1_3:8838889-8838908 Msa0102120:three_prime_UTR 20.0%
!! ATAATGCATAGAATTAAGAT+TGG - chr1_3:8837030-8837049 None:intergenic 20.0%
!!! ATTATATGTAAGATAGCTTT+TGG + chr1_3:8837543-8837562 Msa0102120:CDS 20.0%
!! GATTAATATCTAAGTTTATG+TGG + chr1_3:8838078-8838097 Msa0102120:intron 20.0%
!!! AATTTTGAGTTAATTCCATT+TGG + chr1_3:8838522-8838541 Msa0102120:three_prime_UTR 20.0%
!! TAATGGTTTCATTTGTAATT+TGG + chr1_3:8838819-8838838 Msa0102120:three_prime_UTR 20.0%
!! AATGGTTTCATTTGTAATTT+GGG + chr1_3:8838820-8838839 Msa0102120:three_prime_UTR 20.0%
!!! TATAATGTTAACTTGTATTC+TGG + chr1_3:8838889-8838908 Msa0102120:three_prime_UTR 20.0%
! CTAAGAAAATTGTCTTACAA+TGG + chr1_3:8837312-8837331 Msa0102120:CDS 25.0%
! CAATATCATGGTGATATAAA+AGG + chr1_3:8837480-8837499 Msa0102120:CDS 25.0%
! TTATGAAGAAGAAGTTGAAT+TGG + chr1_3:8837584-8837603 Msa0102120:CDS 25.0%
! TATGAAGAAGAAGTTGAATT+GGG + chr1_3:8837585-8837604 Msa0102120:CDS 25.0%
!! TTTTCCATTGTTATAGTCAA+AGG + chr1_3:8837689-8837708 Msa0102120:exon 25.0%
! GAGGAACAAAAATACAAATA+AGG - chr1_3:8837946-8837965 None:intergenic 25.0%
! AATGAAATAGAAGATGAAGA+AGG - chr1_3:8838040-8838059 None:intergenic 25.0%
! ATAGAAAGTTGTAACATAGA+TGG + chr1_3:8838366-8838385 Msa0102120:three_prime_UTR 25.0%
!! TTAACATAGACTAGAGTTTT+TGG - chr1_3:8838405-8838424 None:intergenic 25.0%
! TAGAGATAATAGAAACTTTG+AGG - chr1_3:8838789-8838808 None:intergenic 25.0%
! ATCTCTAGATCAATTGATAA+TGG + chr1_3:8838802-8838821 Msa0102120:three_prime_UTR 25.0%
! TGTTAACTTATATTCTTCCT+AGG + chr1_3:8839008-8839027 Msa0102120:three_prime_UTR 25.0%
! CTAAGAAAATTGTCTTACAA+TGG + chr1_3:8837312-8837331 Msa0102120:CDS 25.0%
! CAATATCATGGTGATATAAA+AGG + chr1_3:8837480-8837499 Msa0102120:CDS 25.0%
! TTATGAAGAAGAAGTTGAAT+TGG + chr1_3:8837584-8837603 Msa0102120:CDS 25.0%
! TATGAAGAAGAAGTTGAATT+GGG + chr1_3:8837585-8837604 Msa0102120:CDS 25.0%
!! TTTTCCATTGTTATAGTCAA+AGG + chr1_3:8837689-8837708 Msa0102120:exon 25.0%
! GAGGAACAAAAATACAAATA+AGG - chr1_3:8837946-8837965 None:intergenic 25.0%
! AATGAAATAGAAGATGAAGA+AGG - chr1_3:8838040-8838059 None:intergenic 25.0%
! ATAGAAAGTTGTAACATAGA+TGG + chr1_3:8838366-8838385 Msa0102120:three_prime_UTR 25.0%
!! TTAACATAGACTAGAGTTTT+TGG - chr1_3:8838405-8838424 None:intergenic 25.0%
! TAGAGATAATAGAAACTTTG+AGG - chr1_3:8838789-8838808 None:intergenic 25.0%
! ATCTCTAGATCAATTGATAA+TGG + chr1_3:8838802-8838821 Msa0102120:three_prime_UTR 25.0%
! TGTTAACTTATATTCTTCCT+AGG + chr1_3:8839008-8839027 Msa0102120:three_prime_UTR 25.0%
AAATTTCCAATTAGAGGAAG+TGG - chr1_3:8837111-8837130 None:intergenic 30.0%
TGGTGTAAATTTCCAATTAG+AGG - chr1_3:8837117-8837136 None:intergenic 30.0%
! ACTTGCAAATTTAAGGTCAT+GGG - chr1_3:8837274-8837293 None:intergenic 30.0%
! TACTTGCAAATTTAAGGTCA+TGG - chr1_3:8837275-8837294 None:intergenic 30.0%
ATGGTCTACTTGCAAATTTA+AGG - chr1_3:8837281-8837300 None:intergenic 30.0%
TTTCTTAGTCCAAGAAAAGA+TGG - chr1_3:8837300-8837319 None:intergenic 30.0%
!!! TGACAAGTTTTGAATCAACT+GGG - chr1_3:8837460-8837479 None:intergenic 30.0%
CAAAACTTGTCACAATATCA+TGG + chr1_3:8837468-8837487 Msa0102120:CDS 30.0%
AGTTCCTTTGACTATAACAA+TGG - chr1_3:8837696-8837715 None:intergenic 30.0%
TCTTGGATTGATATAGTCAA+AGG + chr1_3:8837715-8837734 Msa0102120:three_prime_UTR 30.0%
ATATAGTCAAAGGAACTCTT+GGG + chr1_3:8837725-8837744 Msa0102120:three_prime_UTR 30.0%
! ATGCAGAACATTTTTATAGC+AGG + chr1_3:8838126-8838145 Msa0102120:intron 30.0%
GTTACCTTATCTTAAAGTAG+TGG + chr1_3:8838287-8838306 Msa0102120:three_prime_UTR 30.0%
!! TTCACCACTACTTTAAGATA+AGG - chr1_3:8838294-8838313 None:intergenic 30.0%
! CAACTTTCTATTGTTTCTCT+TGG - chr1_3:8838357-8838376 None:intergenic 30.0%
TCTAGTCTATGTTAATGCAT+GGG + chr1_3:8838410-8838429 Msa0102120:three_prime_UTR 30.0%
TTTCAGGATAAAACTCTTCA+GGG - chr1_3:8838467-8838486 None:intergenic 30.0%
ATGAGTTCAGTGGATATTAA+AGG + chr1_3:8838495-8838514 Msa0102120:three_prime_UTR 30.0%
TGAGTTCAGTGGATATTAAA+GGG + chr1_3:8838496-8838515 Msa0102120:three_prime_UTR 30.0%
TTCTTATGCATAGTTATTCC+TGG - chr1_3:8838687-8838706 None:intergenic 30.0%
TAGAAAGTAAACTCTTGAGT+CGG - chr1_3:8838942-8838961 None:intergenic 30.0%
AAATTTCCAATTAGAGGAAG+TGG - chr1_3:8837111-8837130 None:intergenic 30.0%
TGGTGTAAATTTCCAATTAG+AGG - chr1_3:8837117-8837136 None:intergenic 30.0%
! ACTTGCAAATTTAAGGTCAT+GGG - chr1_3:8837274-8837293 None:intergenic 30.0%
! TACTTGCAAATTTAAGGTCA+TGG - chr1_3:8837275-8837294 None:intergenic 30.0%
ATGGTCTACTTGCAAATTTA+AGG - chr1_3:8837281-8837300 None:intergenic 30.0%
TTTCTTAGTCCAAGAAAAGA+TGG - chr1_3:8837300-8837319 None:intergenic 30.0%
!!! TGACAAGTTTTGAATCAACT+GGG - chr1_3:8837460-8837479 None:intergenic 30.0%
CAAAACTTGTCACAATATCA+TGG + chr1_3:8837468-8837487 Msa0102120:CDS 30.0%
AGTTCCTTTGACTATAACAA+TGG - chr1_3:8837696-8837715 None:intergenic 30.0%
TCTTGGATTGATATAGTCAA+AGG + chr1_3:8837715-8837734 Msa0102120:three_prime_UTR 30.0%
ATATAGTCAAAGGAACTCTT+GGG + chr1_3:8837725-8837744 Msa0102120:three_prime_UTR 30.0%
! ATGCAGAACATTTTTATAGC+AGG + chr1_3:8838126-8838145 Msa0102120:intron 30.0%
GTTACCTTATCTTAAAGTAG+TGG + chr1_3:8838287-8838306 Msa0102120:three_prime_UTR 30.0%
!! TTCACCACTACTTTAAGATA+AGG - chr1_3:8838294-8838313 None:intergenic 30.0%
! CAACTTTCTATTGTTTCTCT+TGG - chr1_3:8838357-8838376 None:intergenic 30.0%
TCTAGTCTATGTTAATGCAT+GGG + chr1_3:8838410-8838429 Msa0102120:three_prime_UTR 30.0%
TTTCAGGATAAAACTCTTCA+GGG - chr1_3:8838467-8838486 None:intergenic 30.0%
ATGAGTTCAGTGGATATTAA+AGG + chr1_3:8838495-8838514 Msa0102120:three_prime_UTR 30.0%
TGAGTTCAGTGGATATTAAA+GGG + chr1_3:8838496-8838515 Msa0102120:three_prime_UTR 30.0%
TTCTTATGCATAGTTATTCC+TGG - chr1_3:8838687-8838706 None:intergenic 30.0%
TAGAAAGTAAACTCTTGAGT+CGG - chr1_3:8838942-8838961 None:intergenic 30.0%
CATGATAGGTCCATATTGTT+TGG - chr1_3:8837181-8837200 None:intergenic 35.0%
CCAAGGTGTAAAAACATGAT+AGG - chr1_3:8837195-8837214 None:intergenic 35.0%
!! CCTATCATGTTTTTACACCT+TGG + chr1_3:8837192-8837211 Msa0102120:CDS 35.0%
CAATGGTTTAGATCTTGCTT+TGG + chr1_3:8837329-8837348 Msa0102120:CDS 35.0%
TCTCTCCAATAAGGACTATA+AGG - chr1_3:8837357-8837376 None:intergenic 35.0%
TTTCTCATCTCTCTCCAATA+AGG - chr1_3:8837366-8837385 None:intergenic 35.0%
!!! GTGACAAGTTTTGAATCAAC+TGG - chr1_3:8837461-8837480 None:intergenic 35.0%
GTTATAGTCAAAGGAACTCT+TGG + chr1_3:8837698-8837717 Msa0102120:exon 35.0%
GATATAGTCAAAGGAACTCT+TGG + chr1_3:8837724-8837743 Msa0102120:three_prime_UTR 35.0%
TGATAAAACCTTCAAGGAGT+TGG + chr1_3:8837753-8837772 Msa0102120:three_prime_UTR 35.0%
TATCAAATCCAACTCCTTGA+AGG - chr1_3:8837764-8837783 None:intergenic 35.0%
AGTGGTCATCAATAACTCTT+TGG - chr1_3:8837789-8837808 None:intergenic 35.0%
! AAGAGTTATTGATGACCACT+TGG + chr1_3:8837789-8837808 Msa0102120:three_prime_UTR 35.0%
! TACTTGCTGAATTATCCAAG+TGG - chr1_3:8837807-8837826 None:intergenic 35.0%
CTTGGATAATTCAGCAAGTA+AGG + chr1_3:8837807-8837826 Msa0102120:three_prime_UTR 35.0%
TCAAAGCTGTTCTTATGGTA+TGG + chr1_3:8837914-8837933 Msa0102120:intron 35.0%
AAGTTCAGCAATAGTGGTTT+GGG + chr1_3:8838158-8838177 Msa0102120:three_prime_UTR 35.0%
AGTGATGAACAAGGTTCAAA+TGG + chr1_3:8838209-8838228 Msa0102120:three_prime_UTR 35.0%
GTTTCTCTTGGTACTAGTAA+TGG - chr1_3:8838345-8838364 None:intergenic 35.0%
CTCTAGTCTATGTTAATGCA+TGG + chr1_3:8838409-8838428 Msa0102120:three_prime_UTR 35.0%
CTTTCAGGATAAAACTCTTC+AGG - chr1_3:8838468-8838487 None:intergenic 35.0%
!! CTGAAGAGTTTTATCCTGAA+AGG + chr1_3:8838466-8838485 Msa0102120:three_prime_UTR 35.0%
GAACTCATAAAGAACCTTTC+AGG - chr1_3:8838483-8838502 None:intergenic 35.0%
AAGGTTCTTTATGAGTTCAG+TGG + chr1_3:8838485-8838504 Msa0102120:three_prime_UTR 35.0%
GAGTTAATTCCATTTGGAAG+TGG + chr1_3:8838528-8838547 Msa0102120:three_prime_UTR 35.0%
ATTCTTCTTCCACTTCCAAA+TGG - chr1_3:8838540-8838559 None:intergenic 35.0%
ATCTTCTTCACTCCTTTGAT+TGG + chr1_3:8838610-8838629 Msa0102120:three_prime_UTR 35.0%
! TTTTGACAAGGAACAAGTGT+TGG + chr1_3:8838647-8838666 Msa0102120:three_prime_UTR 35.0%
TTGGATACAAAAGTGAAACC+AGG + chr1_3:8838666-8838685 Msa0102120:three_prime_UTR 35.0%
ATTGATCTTTACCTTGTTCC+TGG + chr1_3:8838708-8838727 Msa0102120:three_prime_UTR 35.0%
TTGATCTTTACCTTGTTCCT+GGG + chr1_3:8838709-8838728 Msa0102120:three_prime_UTR 35.0%
! CACTATAGTTTTCTTTTCCC+AGG - chr1_3:8838729-8838748 None:intergenic 35.0%
GAGTCGGATAAAATCACAAT+GGG - chr1_3:8838926-8838945 None:intergenic 35.0%
TGAGTCGGATAAAATCACAA+TGG - chr1_3:8838927-8838946 None:intergenic 35.0%
AAGAGATCAATGATGATCCT+AGG - chr1_3:8839028-8839047 None:intergenic 35.0%
TAGGATCATCATTGATCTCT+TGG + chr1_3:8839027-8839046 Msa0102120:three_prime_UTR 35.0%
CATGATAGGTCCATATTGTT+TGG - chr1_3:8837181-8837200 None:intergenic 35.0%
CCAAGGTGTAAAAACATGAT+AGG - chr1_3:8837195-8837214 None:intergenic 35.0%
!! CCTATCATGTTTTTACACCT+TGG + chr1_3:8837192-8837211 Msa0102120:CDS 35.0%
CAATGGTTTAGATCTTGCTT+TGG + chr1_3:8837329-8837348 Msa0102120:CDS 35.0%
TCTCTCCAATAAGGACTATA+AGG - chr1_3:8837357-8837376 None:intergenic 35.0%
TTTCTCATCTCTCTCCAATA+AGG - chr1_3:8837366-8837385 None:intergenic 35.0%
!!! GTGACAAGTTTTGAATCAAC+TGG - chr1_3:8837461-8837480 None:intergenic 35.0%
GTTATAGTCAAAGGAACTCT+TGG + chr1_3:8837698-8837717 Msa0102120:exon 35.0%
GATATAGTCAAAGGAACTCT+TGG + chr1_3:8837724-8837743 Msa0102120:three_prime_UTR 35.0%
TGATAAAACCTTCAAGGAGT+TGG + chr1_3:8837753-8837772 Msa0102120:three_prime_UTR 35.0%
TATCAAATCCAACTCCTTGA+AGG - chr1_3:8837764-8837783 None:intergenic 35.0%
AGTGGTCATCAATAACTCTT+TGG - chr1_3:8837789-8837808 None:intergenic 35.0%
! AAGAGTTATTGATGACCACT+TGG + chr1_3:8837789-8837808 Msa0102120:three_prime_UTR 35.0%
! TACTTGCTGAATTATCCAAG+TGG - chr1_3:8837807-8837826 None:intergenic 35.0%
CTTGGATAATTCAGCAAGTA+AGG + chr1_3:8837807-8837826 Msa0102120:three_prime_UTR 35.0%
TCAAAGCTGTTCTTATGGTA+TGG + chr1_3:8837914-8837933 Msa0102120:intron 35.0%
AAGTTCAGCAATAGTGGTTT+GGG + chr1_3:8838158-8838177 Msa0102120:three_prime_UTR 35.0%
AGTGATGAACAAGGTTCAAA+TGG + chr1_3:8838209-8838228 Msa0102120:three_prime_UTR 35.0%
GTTTCTCTTGGTACTAGTAA+TGG - chr1_3:8838345-8838364 None:intergenic 35.0%
CTCTAGTCTATGTTAATGCA+TGG + chr1_3:8838409-8838428 Msa0102120:three_prime_UTR 35.0%
CTTTCAGGATAAAACTCTTC+AGG - chr1_3:8838468-8838487 None:intergenic 35.0%
!! CTGAAGAGTTTTATCCTGAA+AGG + chr1_3:8838466-8838485 Msa0102120:three_prime_UTR 35.0%
GAACTCATAAAGAACCTTTC+AGG - chr1_3:8838483-8838502 None:intergenic 35.0%
AAGGTTCTTTATGAGTTCAG+TGG + chr1_3:8838485-8838504 Msa0102120:three_prime_UTR 35.0%
GAGTTAATTCCATTTGGAAG+TGG + chr1_3:8838528-8838547 Msa0102120:three_prime_UTR 35.0%
ATTCTTCTTCCACTTCCAAA+TGG - chr1_3:8838540-8838559 None:intergenic 35.0%
ATCTTCTTCACTCCTTTGAT+TGG + chr1_3:8838610-8838629 Msa0102120:three_prime_UTR 35.0%
! TTTTGACAAGGAACAAGTGT+TGG + chr1_3:8838647-8838666 Msa0102120:three_prime_UTR 35.0%
TTGGATACAAAAGTGAAACC+AGG + chr1_3:8838666-8838685 Msa0102120:three_prime_UTR 35.0%
ATTGATCTTTACCTTGTTCC+TGG + chr1_3:8838708-8838727 Msa0102120:three_prime_UTR 35.0%
TTGATCTTTACCTTGTTCCT+GGG + chr1_3:8838709-8838728 Msa0102120:three_prime_UTR 35.0%
! CACTATAGTTTTCTTTTCCC+AGG - chr1_3:8838729-8838748 None:intergenic 35.0%
GAGTCGGATAAAATCACAAT+GGG - chr1_3:8838926-8838945 None:intergenic 35.0%
TGAGTCGGATAAAATCACAA+TGG - chr1_3:8838927-8838946 None:intergenic 35.0%
AAGAGATCAATGATGATCCT+AGG - chr1_3:8839028-8839047 None:intergenic 35.0%
TAGGATCATCATTGATCTCT+TGG + chr1_3:8839027-8839046 Msa0102120:three_prime_UTR 35.0%
! CCAATTAGAGGAAGTGGTTT+TGG - chr1_3:8837105-8837124 None:intergenic 40.0%
CCAAAACCACTTCCTCTAAT+TGG + chr1_3:8837102-8837121 Msa0102120:CDS 40.0%
TTGTTTGGAGAGTTGCCATA+GGG - chr1_3:8837166-8837185 None:intergenic 40.0%
ATTGTTTGGAGAGTTGCCAT+AGG - chr1_3:8837167-8837186 None:intergenic 40.0%
TGGCAACTCTCCAAACAATA+TGG + chr1_3:8837168-8837187 Msa0102120:CDS 40.0%
! TTTTGCTGAGGAAACAACCA+AGG - chr1_3:8837229-8837248 None:intergenic 40.0%
! GGTTGTTTCCTCAGCAAAAA+TGG + chr1_3:8837230-8837249 Msa0102120:CDS 40.0%
!!! TTGTTCTGCCATTTTTGCTG+AGG - chr1_3:8837241-8837260 None:intergenic 40.0%
! GCAAGTAGACCATCTTTTCT+TGG + chr1_3:8837288-8837307 Msa0102120:CDS 40.0%
TGGCACCTTATAGTCCTTAT+TGG + chr1_3:8837349-8837368 Msa0102120:CDS 40.0%
CTCGAATAGGCCTAAAAGAA+TGG - chr1_3:8837425-8837444 None:intergenic 40.0%
GCCTATTCGAGAAAATGAAG+TGG + chr1_3:8837434-8837453 Msa0102120:CDS 40.0%
! GCCACTTCATTTTCTCGAAT+AGG - chr1_3:8837438-8837457 None:intergenic 40.0%
GAAGAAGTTGAATTGGGAAG+TGG + chr1_3:8837591-8837610 Msa0102120:CDS 40.0%
GAGGCTTGATAAAACCTTCA+AGG + chr1_3:8837747-8837766 Msa0102120:three_prime_UTR 40.0%
! CCATAAGAACAGCTTTGATG+TGG - chr1_3:8837912-8837931 None:intergenic 40.0%
CCACATCAAAGCTGTTCTTA+TGG + chr1_3:8837909-8837928 Msa0102120:three_prime_UTR 40.0%
AGACACAAGTTCAGCAATAG+TGG + chr1_3:8838152-8838171 Msa0102120:three_prime_UTR 40.0%
CAAGTTCAGCAATAGTGGTT+TGG + chr1_3:8838157-8838176 Msa0102120:three_prime_UTR 40.0%
CAATCCTAGAGTGATGAACA+AGG + chr1_3:8838200-8838219 Msa0102120:three_prime_UTR 40.0%
TGAACCTTGTTCATCACTCT+AGG - chr1_3:8838207-8838226 None:intergenic 40.0%
CTTGGTACTAGTAATGGTGA+TGG - chr1_3:8838339-8838358 None:intergenic 40.0%
TATGTTAATGCATGGGCCAT+AGG + chr1_3:8838417-8838436 Msa0102120:three_prime_UTR 40.0%
AATGTGTCCTGCAATGAACA+TGG + chr1_3:8838557-8838576 Msa0102120:three_prime_UTR 40.0%
ATGTGTCCTGCAATGAACAT+GGG + chr1_3:8838558-8838577 Msa0102120:three_prime_UTR 40.0%
ATGAGGCAGATTCCAATCAA+AGG - chr1_3:8838625-8838644 None:intergenic 40.0%
TTTGATTGGAATCTGCCTCA+TGG + chr1_3:8838624-8838643 Msa0102120:three_prime_UTR 40.0%
TGTTCCTTGTCAAAACCATG+AGG - chr1_3:8838642-8838661 None:intergenic 40.0%
! GTTTTCTTTTCCCAGGAACA+AGG - chr1_3:8838722-8838741 None:intergenic 40.0%
! CCAATTAGAGGAAGTGGTTT+TGG - chr1_3:8837105-8837124 None:intergenic 40.0%
CCAAAACCACTTCCTCTAAT+TGG + chr1_3:8837102-8837121 Msa0102120:CDS 40.0%
TTGTTTGGAGAGTTGCCATA+GGG - chr1_3:8837166-8837185 None:intergenic 40.0%
ATTGTTTGGAGAGTTGCCAT+AGG - chr1_3:8837167-8837186 None:intergenic 40.0%
TGGCAACTCTCCAAACAATA+TGG + chr1_3:8837168-8837187 Msa0102120:CDS 40.0%
! TTTTGCTGAGGAAACAACCA+AGG - chr1_3:8837229-8837248 None:intergenic 40.0%
! GGTTGTTTCCTCAGCAAAAA+TGG + chr1_3:8837230-8837249 Msa0102120:CDS 40.0%
!!! TTGTTCTGCCATTTTTGCTG+AGG - chr1_3:8837241-8837260 None:intergenic 40.0%
! GCAAGTAGACCATCTTTTCT+TGG + chr1_3:8837288-8837307 Msa0102120:CDS 40.0%
TGGCACCTTATAGTCCTTAT+TGG + chr1_3:8837349-8837368 Msa0102120:CDS 40.0%
CTCGAATAGGCCTAAAAGAA+TGG - chr1_3:8837425-8837444 None:intergenic 40.0%
GCCTATTCGAGAAAATGAAG+TGG + chr1_3:8837434-8837453 Msa0102120:CDS 40.0%
! GCCACTTCATTTTCTCGAAT+AGG - chr1_3:8837438-8837457 None:intergenic 40.0%
GAAGAAGTTGAATTGGGAAG+TGG + chr1_3:8837591-8837610 Msa0102120:CDS 40.0%
GAGGCTTGATAAAACCTTCA+AGG + chr1_3:8837747-8837766 Msa0102120:three_prime_UTR 40.0%
! CCATAAGAACAGCTTTGATG+TGG - chr1_3:8837912-8837931 None:intergenic 40.0%
CCACATCAAAGCTGTTCTTA+TGG + chr1_3:8837909-8837928 Msa0102120:three_prime_UTR 40.0%
AGACACAAGTTCAGCAATAG+TGG + chr1_3:8838152-8838171 Msa0102120:three_prime_UTR 40.0%
CAAGTTCAGCAATAGTGGTT+TGG + chr1_3:8838157-8838176 Msa0102120:three_prime_UTR 40.0%
CAATCCTAGAGTGATGAACA+AGG + chr1_3:8838200-8838219 Msa0102120:three_prime_UTR 40.0%
TGAACCTTGTTCATCACTCT+AGG - chr1_3:8838207-8838226 None:intergenic 40.0%
CTTGGTACTAGTAATGGTGA+TGG - chr1_3:8838339-8838358 None:intergenic 40.0%
TATGTTAATGCATGGGCCAT+AGG + chr1_3:8838417-8838436 Msa0102120:three_prime_UTR 40.0%
AATGTGTCCTGCAATGAACA+TGG + chr1_3:8838557-8838576 Msa0102120:three_prime_UTR 40.0%
ATGTGTCCTGCAATGAACAT+GGG + chr1_3:8838558-8838577 Msa0102120:three_prime_UTR 40.0%
ATGAGGCAGATTCCAATCAA+AGG - chr1_3:8838625-8838644 None:intergenic 40.0%
TTTGATTGGAATCTGCCTCA+TGG + chr1_3:8838624-8838643 Msa0102120:three_prime_UTR 40.0%
TGTTCCTTGTCAAAACCATG+AGG - chr1_3:8838642-8838661 None:intergenic 40.0%
! GTTTTCTTTTCCCAGGAACA+AGG - chr1_3:8838722-8838741 None:intergenic 40.0%
TTGCCATAGGGATTGATGTG+GGG - chr1_3:8837154-8837173 None:intergenic 45.0%
GTTGCCATAGGGATTGATGT+GGG - chr1_3:8837155-8837174 None:intergenic 45.0%
AGTTGCCATAGGGATTGATG+TGG - chr1_3:8837156-8837175 None:intergenic 45.0%
! CTCAACGCGTCCATTCTTTT+AGG + chr1_3:8837412-8837431 Msa0102120:CDS 45.0%
TAGTCAAAGGAACTCTTGGG+AGG + chr1_3:8837728-8837747 Msa0102120:three_prime_UTR 45.0%
!! GGTACTAGTAATGGTGATGG+TGG - chr1_3:8838336-8838355 None:intergenic 45.0%
TTAATGCATGGGCCATAGGA+AGG + chr1_3:8838421-8838440 Msa0102120:three_prime_UTR 45.0%
TAATGCATGGGCCATAGGAA+GGG + chr1_3:8838422-8838441 Msa0102120:three_prime_UTR 45.0%
ATTCTCAGGATCCCTTCCTA+TGG - chr1_3:8838436-8838455 None:intergenic 45.0%
TAGGAAGGGATCCTGAGAAT+TGG + chr1_3:8838436-8838455 Msa0102120:three_prime_UTR 45.0%
TCAGGGTCATTCCAATTCTC+AGG - chr1_3:8838450-8838469 None:intergenic 45.0%
ACAACTCCCATGTTCATTGC+AGG - chr1_3:8838567-8838586 None:intergenic 45.0%
!!! TCTGCCTCATGGTTTTGACA+AGG + chr1_3:8838635-8838654 Msa0102120:three_prime_UTR 45.0%
TTGCCATAGGGATTGATGTG+GGG - chr1_3:8837154-8837173 None:intergenic 45.0%
GTTGCCATAGGGATTGATGT+GGG - chr1_3:8837155-8837174 None:intergenic 45.0%
AGTTGCCATAGGGATTGATG+TGG - chr1_3:8837156-8837175 None:intergenic 45.0%
! CTCAACGCGTCCATTCTTTT+AGG + chr1_3:8837412-8837431 Msa0102120:CDS 45.0%
TAGTCAAAGGAACTCTTGGG+AGG + chr1_3:8837728-8837747 Msa0102120:three_prime_UTR 45.0%
!! GGTACTAGTAATGGTGATGG+TGG - chr1_3:8838336-8838355 None:intergenic 45.0%
TTAATGCATGGGCCATAGGA+AGG + chr1_3:8838421-8838440 Msa0102120:three_prime_UTR 45.0%
TAATGCATGGGCCATAGGAA+GGG + chr1_3:8838422-8838441 Msa0102120:three_prime_UTR 45.0%
ATTCTCAGGATCCCTTCCTA+TGG - chr1_3:8838436-8838455 None:intergenic 45.0%
TAGGAAGGGATCCTGAGAAT+TGG + chr1_3:8838436-8838455 Msa0102120:three_prime_UTR 45.0%
TCAGGGTCATTCCAATTCTC+AGG - chr1_3:8838450-8838469 None:intergenic 45.0%
ACAACTCCCATGTTCATTGC+AGG - chr1_3:8838567-8838586 None:intergenic 45.0%
!!! TCTGCCTCATGGTTTTGACA+AGG + chr1_3:8838635-8838654 Msa0102120:three_prime_UTR 45.0%
! AGAGCATCATCAACTCCACC+AGG + chr1_3:8837078-8837097 Msa0102120:CDS 50.0%
!!! AGAGGAAGTGGTTTTGGACC+TGG - chr1_3:8837099-8837118 None:intergenic 50.0%
GGGATTGATGTGGGGATGAA+GGG - chr1_3:8837146-8837165 None:intergenic 50.0%
AGGGATTGATGTGGGGATGA+AGG - chr1_3:8837147-8837166 None:intergenic 50.0%
CATCCCCACATCAATCCCTA+TGG + chr1_3:8837148-8837167 Msa0102120:CDS 50.0%
!! CCAAGGTTGGTACATAGCCA+AGG - chr1_3:8837212-8837231 None:intergenic 50.0%
CCTTGGCTATGTACCAACCT+TGG + chr1_3:8837209-8837228 Msa0102120:CDS 50.0%
GCTGAGGAAACAACCAAGGT+TGG - chr1_3:8837225-8837244 None:intergenic 50.0%
! AGAGCATCATCAACTCCACC+AGG + chr1_3:8837078-8837097 Msa0102120:CDS 50.0%
!!! AGAGGAAGTGGTTTTGGACC+TGG - chr1_3:8837099-8837118 None:intergenic 50.0%
GGGATTGATGTGGGGATGAA+GGG - chr1_3:8837146-8837165 None:intergenic 50.0%
AGGGATTGATGTGGGGATGA+AGG - chr1_3:8837147-8837166 None:intergenic 50.0%
CATCCCCACATCAATCCCTA+TGG + chr1_3:8837148-8837167 Msa0102120:CDS 50.0%
!! CCAAGGTTGGTACATAGCCA+AGG - chr1_3:8837212-8837231 None:intergenic 50.0%
CCTTGGCTATGTACCAACCT+TGG + chr1_3:8837209-8837228 Msa0102120:CDS 50.0%
GCTGAGGAAACAACCAAGGT+TGG - chr1_3:8837225-8837244 None:intergenic 50.0%
!!! GGAAGTGGTTTTGGACCTGG+TGG - chr1_3:8837096-8837115 None:intergenic 55.0%
CGCGTTGAGAGCTAAAGAGG+TGG - chr1_3:8837401-8837420 None:intergenic 55.0%
GGACGCGTTGAGAGCTAAAG+AGG - chr1_3:8837404-8837423 None:intergenic 55.0%
!!! GGAAGTGGTTTTGGACCTGG+TGG - chr1_3:8837096-8837115 None:intergenic 55.0%
CGCGTTGAGAGCTAAAGAGG+TGG - chr1_3:8837401-8837420 None:intergenic 55.0%
GGACGCGTTGAGAGCTAAAG+AGG - chr1_3:8837404-8837423 None:intergenic 55.0%
GTGGGGATGAAGGGTCAAGC+TGG - chr1_3:8837137-8837156 None:intergenic 60.0%
GTGGGGATGAAGGGTCAAGC+TGG - chr1_3:8837137-8837156 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8836990 8839084 8836990 ID=Msa0102120;Name=Msa0102120
chr1_3 mRNA 8836990 8839084 8836990 ID=Msa0102120-mRNA-1;Parent=Msa0102120;Name=Msa0102120-mRNA-1;_AED=0.26;_eAED=0.26;_QI=7|1|1|1|1|1|2|1179|235
chr1_3 exon 8836990 8837930 8836990 ID=Msa0102120-mRNA-1:exon:3521;Parent=Msa0102120-mRNA-1
chr1_3 exon 8838132 8839084 8838132 ID=Msa0102120-mRNA-1:exon:3522;Parent=Msa0102120-mRNA-1
chr1_3 five_prime_UTR 8836990 8836996 8836990 ID=Msa0102120-mRNA-1:five_prime_utr;Parent=Msa0102120-mRNA-1
chr1_3 CDS 8836997 8837704 8836997 ID=Msa0102120-mRNA-1:cds;Parent=Msa0102120-mRNA-1
chr1_3 three_prime_UTR 8837705 8837930 8837705 ID=Msa0102120-mRNA-1:three_prime_utr;Parent=Msa0102120-mRNA-1
chr1_3 three_prime_UTR 8838132 8839084 8838132 ID=Msa0102120-mRNA-1:three_prime_utr;Parent=Msa0102120-mRNA-1
Gene Sequence

>Msa0102120

ATGGGGTTTCTTGTGCTTCTTTCTTTCTTGCCAATCTTAATTCTATGCATTATACACATCTACAAAATAAAGAGTGCAAGAAGAGCATCATCAACTCCACCAGGTCCAAAACCACTTCCTCTAATTGGAAATTTACACCAGCTTGACCCTTCATCCCCACATCAATCCCTATGGCAACTCTCCAAACAATATGGACCTATCATGTTTTTACACCTTGGCTATGTACCAACCTTGGTTGTTTCCTCAGCAAAAATGGCAGAACAAGTGTTGAAAACCCATGACCTTAAATTTGCAAGTAGACCATCTTTTCTTGGACTAAGAAAATTGTCTTACAATGGTTTAGATCTTGCTTTGGCACCTTATAGTCCTTATTGGAGAGAGATGAGAAAACTTTGTGTTCACCACCTCTTTAGCTCTCAACGCGTCCATTCTTTTAGGCCTATTCGAGAAAATGAAGTGGCCCAGTTGATTCAAAACTTGTCACAATATCATGGTGATATAAAAGGTGTGAACTTGAGCGAAATAGTGATGTCTCTCACAAATACAATTATATGTAAGATAGCTTTTGGAAAAACATATATTTGTGATTATGAAGAAGAAGTTGAATTGGGAAGTGGACAAAAGAGAAGTAGATTGCAAGTTTTGCTTAATGAAGCACAAGCTTTGTTGACTGAATTTTACTTTTCAGATAATTTTCCATTGTTATAG

Protein sequence

>Msa0102120

MGFLVLLSFLPILILCIIHIYKIKSARRASSTPPGPKPLPLIGNLHQLDPSSPHQSLWQLSKQYGPIMFLHLGYVPTLVVSSAKMAEQVLKTHDLKFASRPSFLGLRKLSYNGLDLALAPYSPYWREMRKLCVHHLFSSQRVHSFRPIRENEVAQLIQNLSQYHGDIKGVNLSEIVMSLTNTIICKIAFGKTYICDYEEEVELGSGQKRSRLQVLLNEAQALLTEFYFSDNFPLL*