AlfalfaGEDB | Msa0833720

M. sativa cultivar zhongmu-4 / Msa0833720

KEGG: K09531
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009536 GO:0009628 GO:0009642 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055122 GO:0061458
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833720	XP_003611304.2	97.778	540	12	0	1	540	1	540	0.0	1103

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833720	sp\|Q39079\|DNJ13_ARATH	63.498	526	189	1	10	535	13	535	0.0	696

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833720	G7JW29	97.778	540	12	0	1	540	1	540	0.0	1103

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0580470	Msa0833720	0.843170	1.651468e-58	-8.615850e-47
Msa0795820	Msa0833720	0.892368	1.693559e-74	-8.615850e-47
Msa0833720	Msa1132660	0.963817	1.493883e-122	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833720	MtrunA17_Chr5g0399201	97.778	540	12	0	1	540	1	540	0.0	1103
Msa0833720	MtrunA17_Chr4g0040501	47.297	74	37	1	12	85	4	75	8.66e-16	79.0
Msa0833720	MtrunA17_Chr2g0282761	46.753	77	39	1	12	88	4	78	9.82e-16	78.6
Msa0833720	MtrunA17_Chr2g0282741	48.649	74	36	1	12	85	4	75	1.50e-15	78.2
Msa0833720	MtrunA17_Chr4g0006391	47.297	74	37	1	12	85	4	75	4.58e-15	76.6
Msa0833720	MtrunA17_Chr8g0334811	45.000	80	37	1	9	88	11	83	1.39e-14	75.9
Msa0833720	MtrunA17_Chr1g0159491	45.333	75	38	1	12	86	6	77	3.76e-14	67.8
Msa0833720	MtrunA17_Chr2g0324921	45.946	74	38	1	12	85	4	75	4.62e-14	73.6
Msa0833720	MtrunA17_Chr5g0427221	43.662	71	37	1	11	81	47	114	1.40e-13	68.2
Msa0833720	MtrunA17_Chr1g0209551	48.684	76	36	1	11	86	15	87	1.83e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833720	AT2G35720.1	63.498	526	189	1	10	535	13	535	0.0	696
Msa0833720	AT3G47940.1	48.052	77	37	2	12	87	4	78	1.05e-16	82.0
Msa0833720	AT1G59725.1	45.946	74	37	2	12	84	4	75	3.02e-16	80.5
Msa0833720	AT4G28480.2	45.455	77	40	1	12	88	4	78	2.14e-15	77.4
Msa0833720	AT2G20560.1	46.753	77	39	1	12	88	4	78	2.90e-15	77.8
Msa0833720	AT1G10350.1	44.000	75	40	1	12	86	4	76	3.72e-15	77.4
Msa0833720	AT4G28480.1	45.455	77	40	1	12	88	4	78	4.46e-15	77.4
Msa0833720	AT5G01390.3	45.205	73	38	1	12	84	4	74	5.08e-15	75.1
Msa0833720	AT5G01390.4	45.205	73	38	1	12	84	4	74	6.88e-15	74.7
Msa0833720	AT5G01390.2	45.205	73	38	1	12	84	4	74	9.19e-15	75.1

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Find 168 sgRNAs with CRISPR-Local

Find 730 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCCACAAGGTATCT+TGG	0.434823	5_4:-6811937	None:intergenic
AAAATTGTGGTACAGCAGCA+GGG	0.669364	5_4:-6822228	None:intergenic
AAACGAAATGTTGTTGGGAT+TGG	0.467280	5_4:+6813607	Msa0833720:CDS
AAATCTCATGGCTGCATTGG+AGG	0.439365	5_4:+6814862	Msa0833720:CDS
AAATGAAAATTACAGCCATT+GGG	0.452490	5_4:-6822312	None:intergenic
AACAACTTGTATTCGTCAAA+TGG	0.369969	5_4:+6820059	Msa0833720:CDS
AACAAGCAATTAGAAACGGG+TGG	0.644799	5_4:+6819993	Msa0833720:CDS
AACCATCTGTAGCTGTAGGG+TGG	0.613280	5_4:+6814510	Msa0833720:CDS
AACGCTCCAGTAGCAAACAT+AGG	0.595428	5_4:-6818009	None:intergenic
AACTCGTTGAAAATTCTCAG+TGG	0.720687	5_4:-6812241	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATAAACCTGTCTCTTATT+CGG	-	chr5_4:6812294-6812313	None:intergenic	30.0%
GATAAGCTAGTGTATTGAAA+TGG	+	chr5_4:6812642-6812661	Msa0833720:intron	30.0%
GATAGTAATCAAATCACTAG+AGG	+	chr5_4:6812965-6812984	Msa0833720:intron	30.0%
ATGGATATGATAGAACATTG+CGG	+	chr5_4:6813055-6813074	Msa0833720:intron	30.0%
ATCGATAAACTATTGCAACA+AGG	-	chr5_4:6813171-6813190	None:intergenic	30.0%
CCACCTAAGACAATTTAAAA+TGG	+	chr5_4:6813361-6813380	Msa0833720:intron	30.0%
GAAGCAATTATTTAACTGTC+AGG	-	chr5_4:6813459-6813478	None:intergenic	30.0%
TTGTCAAAACGAAATGTTGT+TGG	+	chr5_4:6813601-6813620	Msa0833720:CDS	30.0%
TGTCAAAACGAAATGTTGTT+GGG	+	chr5_4:6813602-6813621	Msa0833720:CDS	30.0%
ATTAAGTCATCAACTTTCTG+AGG	+	chr5_4:6813681-6813700	Msa0833720:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	6811898	6822447	6811898	ID=Msa0833720;Name=Msa0833720
chr5_4	mRNA	6811898	6822447	6811898	ID=Msa0833720-mRNA-1;Parent=Msa0833720;Name=Msa0833720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=186\|1\|1\|1\|0.90\|0.91\|12\|474\|540
chr5_4	exon	6811898	6812514	6811898	ID=Msa0833720-mRNA-1:exon:2994;Parent=Msa0833720-mRNA-1
chr5_4	exon	6813570	6813767	6813570	ID=Msa0833720-mRNA-1:exon:2995;Parent=Msa0833720-mRNA-1
chr5_4	exon	6813860	6813974	6813860	ID=Msa0833720-mRNA-1:exon:2996;Parent=Msa0833720-mRNA-1
chr5_4	exon	6814488	6814574	6814488	ID=Msa0833720-mRNA-1:exon:2997;Parent=Msa0833720-mRNA-1
chr5_4	exon	6814808	6814896	6814808	ID=Msa0833720-mRNA-1:exon:2998;Parent=Msa0833720-mRNA-1
chr5_4	exon	6816200	6816284	6816200	ID=Msa0833720-mRNA-1:exon:2999;Parent=Msa0833720-mRNA-1
chr5_4	exon	6817174	6817227	6817174	ID=Msa0833720-mRNA-1:exon:3000;Parent=Msa0833720-mRNA-1
chr5_4	exon	6817985	6818065	6817985	ID=Msa0833720-mRNA-1:exon:3001;Parent=Msa0833720-mRNA-1
chr5_4	exon	6818684	6818761	6818684	ID=Msa0833720-mRNA-1:exon:3002;Parent=Msa0833720-mRNA-1
chr5_4	exon	6819924	6820163	6819924	ID=Msa0833720-mRNA-1:exon:3003;Parent=Msa0833720-mRNA-1
chr5_4	exon	6821713	6821820	6821713	ID=Msa0833720-mRNA-1:exon:3004;Parent=Msa0833720-mRNA-1
chr5_4	exon	6821917	6822447	6821917	ID=Msa0833720-mRNA-1:exon:3005;Parent=Msa0833720-mRNA-1
chr5_4	five_prime_UTR	6811898	6812083	6811898	ID=Msa0833720-mRNA-1:five_prime_utr;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6812084	6812514	6812084	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6813570	6813767	6813570	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6813860	6813974	6813860	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6814488	6814574	6814488	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6814808	6814896	6814808	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6816200	6816284	6816200	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6817174	6817227	6817174	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6817985	6818065	6817985	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6818684	6818761	6818684	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6819924	6820163	6819924	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6821713	6821820	6821713	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	CDS	6821917	6821973	6821917	ID=Msa0833720-mRNA-1:cds;Parent=Msa0833720-mRNA-1
chr5_4	three_prime_UTR	6821974	6822447	6821974	ID=Msa0833720-mRNA-1:three_prime_utr;Parent=Msa0833720-mRNA-1

Gene Sequence

>Msa0833720

ATGATGGAACAAAACTCTGAACAAGACAATCGTGAACTCTACGCAATCCTCAACCTCTCACCCGAATCCTCCGACGAAGAAATCCGCAAAGCTTATCGTCAATGGGCACAAGCATATCATCCAGACAAGTACCAAAATCCTCTCATGAAAGATGCTGCCACTGAGAATTTTCAACGAGTTTGTGAAGCTTATGAGATTCTTTCAGATCCGAATAAGAGACAGGTTTATGATATTTATGGTATGGAAGGGTTGAAATCTGGTTTGGAACTTGGTTCGAGGTTGGATAGAGCTGAAGAGATTAAAGCCGAGTTGGAGAGGTTGAAGAGAAGAAGGGAACATGAGAAGATGGTGGCAAGTTTTCAATCTTCCGGGACGATTTTGGCTAATTTGTCTGTGCCGCAGTATTTAGATGGTGACGGTCTCTTTAGAGGAATGGCAATGACGAGTGAAGTTCAGTCTCAATTGTCAAAACGAAATGTTGTTGGGATTGGCGGCAATTTAGCAGTTGAAGGACATCAAGGTGGTGGAGCTGCTAATGCTGTATTAAGTCATCAACTTTCTGAGGCTTCGTCAATAGAATTTATTGCTTCAGCCGGTTTACGTTCACTAATTGGAGTGCAGACATCACGCGTTATATCATCACACTCATCTGCAACAGCAGGCTTAACAATGTCTTTGAGAGATGGTTCGTTGAATCTTTCTAATGCATGGACCCGCCAGCTGTCAGAAACAACAAATGGACATATACAACTCATGTTGGGATCACAACCATCTGTAGCTGTAGGGTGGAAGAAAGAAGACGAGAAAAGGACTGCCACTGCAGATGTGAAGCTCGGCACAGGTCCTTTCGAGACATCAGCTCGGTATACTCATCGATTTTCTTCTAAATCTCATGGCTGCATTGGAGGAAGATTTGGGAGCTCTTCCATTGAGATGGAAGTTGGTGGTGGAAGGAAGTTATCCAAATTCAGTACTGTGCGCTGGTTGTATGTAGTAGGACTTCAGGGTATTTCCTGGAGATTTGAATTCTGTCGTGGGGGTCAGAAGTTGATTATTCCTATTTTGCTGACGAATCATTTGAACCCTATGTTTGCTACTGGAGCGTTAGTTATTCCAGCATCGTTTTACTTTGTTCTGAAGAAATTTGTCATTAAACCGTATTACCTTAAAAGGAATAAGCAGAAGGCTCTAGAGAAGGAGGGAAAAACTTCTACTCAGGTTCAAGAAGCAAGGGCAGCAGCAGAAAAAGCTCAGAAATTACAACAAAATGTAGCTAATAGGAAAAGAAACAAGCAATTAGAAACGGGTGGACTGGTTGTTATGAAAGCGCTATATGGAAGTGATACAGTTTTGAACAACTTGTATTCGTCAAATGGAACAAGTTTTGAATCTACTTCAGGAGTCATTGATGTTACAACACCTCTGAATTTTCTAGTTAATGATTCTGGTCAACTTAAGCTTCACGAAGGTGTAAAGAAATCAGGAATCATGGGATTTTGTGATCCTTGTCCAGGAGAAACTAAACTGTTGTATGTAGAGTACGCTCATGCCGGCAATCAACACAAGGTATTGGTTGGTGACTATGAACAATTAGTGATACCCCAGGGCATCCACAGGATATAA

Protein sequence

>Msa0833720

MMEQNSEQDNRELYAILNLSPESSDEEIRKAYRQWAQAYHPDKYQNPLMKDAATENFQRVCEAYEILSDPNKRQVYDIYGMEGLKSGLELGSRLDRAEEIKAELERLKRRREHEKMVASFQSSGTILANLSVPQYLDGDGLFRGMAMTSEVQSQLSKRNVVGIGGNLAVEGHQGGGAANAVLSHQLSEASSIEFIASAGLRSLIGVQTSRVISSHSSATAGLTMSLRDGSLNLSNAWTRQLSETTNGHIQLMLGSQPSVAVGWKKEDEKRTATADVKLGTGPFETSARYTHRFSSKSHGCIGGRFGSSSIEMEVGGGRKLSKFSTVRWLYVVGLQGISWRFEFCRGGQKLIIPILLTNHLNPMFATGALVIPASFYFVLKKFVIKPYYLKRNKQKALEKEGKTSTQVQEARAAAEKAQKLQQNVANRKRNKQLETGGLVVMKALYGSDTVLNNLYSSNGTSFESTSGVIDVTTPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGETKLLYVEYAHAGNQHKVLVGDYEQLVIPQGIHRI*