Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836310 | XP_039690096.1 | 97.396 | 192 | 5 | 0 | 8 | 199 | 139 | 330 | 6.01e-135 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836310 | sp|Q93XX5|Y5713_ARATH | 50.785 | 191 | 94 | 0 | 9 | 199 | 157 | 347 | 4.06e-71 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836310 | G7K6M0 | 97.396 | 192 | 5 | 0 | 8 | 199 | 139 | 330 | 2.87e-135 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0756800 | Msa0836310 | 0.888810 | 4.242210e-73 | -8.615850e-47 |
| Msa0343030 | Msa0836310 | 0.866984 | 1.911568e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836310 | MtrunA17_Chr5g0402081 | 97.396 | 192 | 5 | 0 | 8 | 199 | 139 | 330 | 5.53e-139 | 394 |
| Msa0836310 | MtrunA17_Chr4g0044651 | 64.249 | 193 | 67 | 1 | 9 | 199 | 147 | 339 | 1.55e-95 | 284 |
| Msa0836310 | MtrunA17_Chr7g0219811 | 54.974 | 191 | 86 | 0 | 9 | 199 | 150 | 340 | 2.75e-82 | 248 |
| Msa0836310 | MtrunA17_Chr4g0044681 | 51.579 | 190 | 92 | 0 | 9 | 198 | 140 | 329 | 4.52e-75 | 229 |
| Msa0836310 | MtrunA17_Chr5g0401931 | 53.403 | 191 | 89 | 0 | 9 | 199 | 150 | 340 | 6.31e-75 | 231 |
| Msa0836310 | MtrunA17_Chr4g0053041 | 52.880 | 191 | 90 | 0 | 9 | 199 | 162 | 352 | 9.29e-75 | 231 |
| Msa0836310 | MtrunA17_Chr5g0419671 | 50.785 | 191 | 78 | 1 | 9 | 199 | 29 | 203 | 6.09e-70 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836310 | AT1G49740.1 | 59.686 | 191 | 77 | 0 | 9 | 199 | 150 | 340 | 1.16e-85 | 257 |
| Msa0836310 | AT4G36945.1 | 58.115 | 191 | 80 | 0 | 9 | 199 | 146 | 336 | 4.79e-84 | 255 |
| Msa0836310 | AT3G19310.1 | 57.592 | 191 | 81 | 0 | 9 | 199 | 150 | 340 | 2.92e-82 | 250 |
| Msa0836310 | AT5G67130.1 | 50.785 | 191 | 94 | 0 | 9 | 199 | 157 | 347 | 4.13e-72 | 225 |
| Msa0836310 | AT1G13680.1 | 49.474 | 190 | 96 | 0 | 10 | 199 | 145 | 334 | 7.24e-72 | 222 |
Find 55 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGACATGCGTTCATTTC+TGG | 0.130652 | 5_4:+9785242 | Msa0836310:CDS |
| TAATCAACAGCGATGAAATT+TGG | 0.242073 | 5_4:-9785923 | None:intergenic |
| AGGCCAATCGCTACCGTTCT+TGG | 0.277242 | 5_4:-9785388 | None:intergenic |
| CATCGCTGTTGATTATTATC+AGG | 0.302636 | 5_4:+9785931 | Msa0836310:CDS |
| ACTAAGGTCTTCCAAGCTTC+AGG | 0.304715 | 5_4:+9785330 | Msa0836310:CDS |
| TCCAAGCTTCAGGGATTAAC+AGG | 0.322189 | 5_4:+9785340 | Msa0836310:CDS |
| CGATAAATCGTTGATTGTTC+AGG | 0.322795 | 5_4:-9785428 | None:intergenic |
| TTCTTGGGCAACCGACCAAC+CGG | 0.355141 | 5_4:-9785372 | None:intergenic |
| AAGCTTGGAAGACCTTAGTT+AGG | 0.355874 | 5_4:-9785326 | None:intergenic |
| AATGCCTTCAGCTGCTTCCT+TGG | 0.356856 | 5_4:-9785469 | None:intergenic |
| ATCGGTTGCCGGCAGCTTCA+TGG | 0.383161 | 5_4:-9785898 | None:intergenic |
| GAAATTTGGCCATCGGTTGC+CGG | 0.398958 | 5_4:-9785909 | None:intergenic |
| GGTGGCGATTCATTTCGATT+TGG | 0.434330 | 5_4:-9785761 | None:intergenic |
| GATTAACAGGTACATGTTCC+CGG | 0.438116 | 5_4:+9785353 | Msa0836310:CDS |
| TGGAGATGAAGGTATGCAAC+CGG | 0.442403 | 5_4:+9785730 | Msa0836310:CDS |
| TTCTACACCGAATCGTTCTC+AGG | 0.443945 | 5_4:+9785829 | Msa0836310:CDS |
| AATAATCACCATCTTTATTG+AGG | 0.452937 | 5_4:+9785281 | Msa0836310:CDS |
| CTAAGGTCTTCCAAGCTTCA+GGG | 0.460500 | 5_4:+9785331 | Msa0836310:CDS |
| GGCCAATCGCTACCGTTCTT+GGG | 0.461898 | 5_4:-9785387 | None:intergenic |
| AGGATCATGTCATCGACAAC+AGG | 0.476366 | 5_4:-9785408 | None:intergenic |
| ACGACGTATTTCCACGTGAA+AGG | 0.494719 | 5_4:-9785492 | None:intergenic |
| ACCTGTTAATCCCTGAAGCT+TGG | 0.494888 | 5_4:-9785341 | None:intergenic |
| AACATAATCCTCAATAAAGA+TGG | 0.496490 | 5_4:-9785289 | None:intergenic |
| AAGATGGTGATTATTTCAGA+TGG | 0.501112 | 5_4:-9785273 | None:intergenic |
| AAGACCTTAGTTAGGGCTGC+AGG | 0.507313 | 5_4:-9785318 | None:intergenic |
| CAAGCTGTTGATGCAGCAAA+TGG | 0.512280 | 5_4:+9786073 | Msa0836310:CDS |
| AGCTCCTGCAGCCCTAACTA+AGG | 0.514774 | 5_4:+9785314 | Msa0836310:CDS |
| AGCTTGGAAGACCTTAGTTA+GGG | 0.519986 | 5_4:-9785325 | None:intergenic |
| ATGAAGCTGCCGGCAACCGA+TGG | 0.525241 | 5_4:+9785900 | Msa0836310:CDS |
| TGCCCAAGAACGGTAGCGAT+TGG | 0.526103 | 5_4:+9785385 | Msa0836310:CDS |
| CACCAATGAACACAAAATCT+AGG | 0.527509 | 5_4:+9785780 | Msa0836310:CDS |
| GTCTTCATCATGCTAAGTAA+TGG | 0.532104 | 5_4:-9785872 | None:intergenic |
| TCTCTAAGCGCGTTTACTGC+AGG | 0.540953 | 5_4:-9785225 | None:intergenic |
| TTTCGATTTGGACAAGAACC+CGG | 0.547317 | 5_4:-9785749 | None:intergenic |
| CAGCGATGAAATTTGGCCAT+CGG | 0.549318 | 5_4:-9785916 | None:intergenic |
| GTTGGTCGGTTGCCCAAGAA+CGG | 0.555167 | 5_4:+9785375 | Msa0836310:CDS |
| CCACAGGCCTGAGAACGATT+CGG | 0.555778 | 5_4:-9785836 | None:intergenic |
| AACTAGGGAACAAATTGAGT+AGG | 0.563034 | 5_4:-9786739 | None:intergenic |
| TTATAGAGGAGTGATGGTGG+AGG | 0.564560 | 5_4:+9786043 | Msa0836310:intron |
| AAGACTTGCCATGAAGCTGC+CGG | 0.572214 | 5_4:+9785890 | Msa0836310:CDS |
| CTGAAGGCATTCCTTTCACG+TGG | 0.572665 | 5_4:+9785481 | Msa0836310:CDS |
| TGCTTCCTTGGATGATCTCG+AGG | 0.574515 | 5_4:-9785457 | None:intergenic |
| TGGAGCTGAATTGTCGCCAC+AGG | 0.577474 | 5_4:-9785852 | None:intergenic |
| ATGTTATAGAGGAGTGATGG+TGG | 0.584052 | 5_4:+9786040 | Msa0836310:intron |
| ACTAGGGAACAAATTGAGTA+GGG | 0.591202 | 5_4:-9786738 | None:intergenic |
| TGTCTATGTCTATCAATGAT+CGG | 0.596553 | 5_4:+9785196 | None:intergenic |
| ATGATGTTATAGAGGAGTGA+TGG | 0.597245 | 5_4:+9786037 | Msa0836310:intron |
| GGTACATGTTCCCGGTTGGT+CGG | 0.601217 | 5_4:+9785361 | Msa0836310:CDS |
| AACAGGTACATGTTCCCGGT+TGG | 0.603434 | 5_4:+9785357 | Msa0836310:CDS |
| TCTTGGGCAACCGACCAACC+GGG | 0.611820 | 5_4:-9785371 | None:intergenic |
| TCATCCAAGGAAGCAGCTGA+AGG | 0.614391 | 5_4:+9785465 | Msa0836310:CDS |
| ATTCTCCTCGAGATCATCCA+AGG | 0.615003 | 5_4:+9785452 | Msa0836310:CDS |
| TTTGCTGCATCAACAGCTTG+TGG | 0.623142 | 5_4:-9786070 | None:intergenic |
| GGAGATGAAGGTATGCAACC+GGG | 0.627950 | 5_4:+9785731 | Msa0836310:CDS |
| CCGAATCGTTCTCAGGCCTG+TGG | 0.668995 | 5_4:+9785836 | Msa0836310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTCTTCTTATAAAT+AGG | + | chr5_4:9786652-9786671 | Msa0836310:intron | 15.0% |
| !!! | TGTTTTTTCTTCTTATAAAT+AGG | + | chr5_4:9786652-9786671 | Msa0836310:intron | 15.0% |
| !!! | AAAAACATGTTTTAACTACT+TGG | + | chr5_4:9785545-9785564 | Msa0836310:intron | 20.0% |
| !! | TTAATAGTATGATACGATTA+TGG | + | chr5_4:9785666-9785685 | Msa0836310:intron | 20.0% |
| !!! | ATATGTTTGAGAATTTTAGA+TGG | + | chr5_4:9785710-9785729 | Msa0836310:intron | 20.0% |
| !!! | TACTAATGATTTGTTAATGA+TGG | + | chr5_4:9786012-9786031 | Msa0836310:intron | 20.0% |
| !!! | ATAACTCAGTTATTTTAGTA+CGG | - | chr5_4:9786260-9786279 | None:intergenic | 20.0% |
| !!! | GTGAAATAAGTCAATTATTT+TGG | - | chr5_4:9786300-9786319 | None:intergenic | 20.0% |
| !! | AACATATTAAATTAAGAGTG+GGG | - | chr5_4:9786379-9786398 | None:intergenic | 20.0% |
| !! | GAACATATTAAATTAAGAGT+GGG | - | chr5_4:9786380-9786399 | None:intergenic | 20.0% |
| !! | AGAACATATTAAATTAAGAG+TGG | - | chr5_4:9786381-9786400 | None:intergenic | 20.0% |
| !! | CAATATGTTCTTACTAAATA+TGG | - | chr5_4:9786535-9786554 | None:intergenic | 20.0% |
| !! | TTTCAAAGAACATTAATTGT+AGG | + | chr5_4:9786568-9786587 | Msa0836310:intron | 20.0% |
| !! | TTCAAAGAACATTAATTGTA+GGG | + | chr5_4:9786569-9786588 | Msa0836310:intron | 20.0% |
| !! | GTCTTATCAATTATCAAATA+TGG | + | chr5_4:9786607-9786626 | Msa0836310:intron | 20.0% |
| !! | CCTTAAAAAAAAATTGAGTA+GGG | - | chr5_4:9786712-9786731 | None:intergenic | 20.0% |
| !! | TCCTTAAAAAAAAATTGAGT+AGG | - | chr5_4:9786713-9786732 | None:intergenic | 20.0% |
| !!! | AAAAACATGTTTTAACTACT+TGG | + | chr5_4:9785545-9785564 | Msa0836310:intron | 20.0% |
| !! | TTAATAGTATGATACGATTA+TGG | + | chr5_4:9785666-9785685 | Msa0836310:intron | 20.0% |
| !!! | ATATGTTTGAGAATTTTAGA+TGG | + | chr5_4:9785710-9785729 | Msa0836310:intron | 20.0% |
| !!! | TACTAATGATTTGTTAATGA+TGG | + | chr5_4:9786012-9786031 | Msa0836310:intron | 20.0% |
| !!! | ATAACTCAGTTATTTTAGTA+CGG | - | chr5_4:9786260-9786279 | None:intergenic | 20.0% |
| !!! | GTGAAATAAGTCAATTATTT+TGG | - | chr5_4:9786300-9786319 | None:intergenic | 20.0% |
| !! | AACATATTAAATTAAGAGTG+GGG | - | chr5_4:9786379-9786398 | None:intergenic | 20.0% |
| !! | GAACATATTAAATTAAGAGT+GGG | - | chr5_4:9786380-9786399 | None:intergenic | 20.0% |
| !! | AGAACATATTAAATTAAGAG+TGG | - | chr5_4:9786381-9786400 | None:intergenic | 20.0% |
| !! | CAATATGTTCTTACTAAATA+TGG | - | chr5_4:9786535-9786554 | None:intergenic | 20.0% |
| !! | TTTCAAAGAACATTAATTGT+AGG | + | chr5_4:9786568-9786587 | Msa0836310:intron | 20.0% |
| !! | TTCAAAGAACATTAATTGTA+GGG | + | chr5_4:9786569-9786588 | Msa0836310:intron | 20.0% |
| !! | GTCTTATCAATTATCAAATA+TGG | + | chr5_4:9786607-9786626 | Msa0836310:intron | 20.0% |
| !! | CCTTAAAAAAAAATTGAGTA+GGG | - | chr5_4:9786712-9786731 | None:intergenic | 20.0% |
| !! | TCCTTAAAAAAAAATTGAGT+AGG | - | chr5_4:9786713-9786732 | None:intergenic | 20.0% |
| ! | AATAATCACCATCTTTATTG+AGG | + | chr5_4:9785281-9785300 | Msa0836310:CDS | 25.0% |
| ! | AACATAATCCTCAATAAAGA+TGG | - | chr5_4:9785292-9785311 | None:intergenic | 25.0% |
| !!! | GTAGTTAAAACATGTTTTTG+AGG | - | chr5_4:9785544-9785563 | None:intergenic | 25.0% |
| ! | TTCTTACTAAATATGGAACA+GGG | - | chr5_4:9786528-9786547 | None:intergenic | 25.0% |
| ! | TTTAGTAAGAACATATTGAG+TGG | + | chr5_4:9786537-9786556 | Msa0836310:intron | 25.0% |
| !! | TTAATGTTCTTTGAAAAGTG+AGG | - | chr5_4:9786564-9786583 | None:intergenic | 25.0% |
| ! | ATTATCAAATATGGATGCAT+TGG | + | chr5_4:9786616-9786635 | Msa0836310:intron | 25.0% |
| ! | CTTCTTATAAATAGGATTAG+AGG | + | chr5_4:9786660-9786679 | Msa0836310:intron | 25.0% |
| !!! | CCCTACTCAATTTTTTTTTA+AGG | + | chr5_4:9786709-9786728 | Msa0836310:intron | 25.0% |
| ! | AATAATCACCATCTTTATTG+AGG | + | chr5_4:9785281-9785300 | Msa0836310:CDS | 25.0% |
| ! | AACATAATCCTCAATAAAGA+TGG | - | chr5_4:9785292-9785311 | None:intergenic | 25.0% |
| !!! | GTAGTTAAAACATGTTTTTG+AGG | - | chr5_4:9785544-9785563 | None:intergenic | 25.0% |
| ! | TTCTTACTAAATATGGAACA+GGG | - | chr5_4:9786528-9786547 | None:intergenic | 25.0% |
| ! | TTTAGTAAGAACATATTGAG+TGG | + | chr5_4:9786537-9786556 | Msa0836310:intron | 25.0% |
| !! | TTAATGTTCTTTGAAAAGTG+AGG | - | chr5_4:9786564-9786583 | None:intergenic | 25.0% |
| ! | ATTATCAAATATGGATGCAT+TGG | + | chr5_4:9786616-9786635 | Msa0836310:intron | 25.0% |
| ! | CTTCTTATAAATAGGATTAG+AGG | + | chr5_4:9786660-9786679 | Msa0836310:intron | 25.0% |
| !!! | CCCTACTCAATTTTTTTTTA+AGG | + | chr5_4:9786709-9786728 | Msa0836310:intron | 25.0% |
| AAGATGGTGATTATTTCAGA+TGG | - | chr5_4:9785276-9785295 | None:intergenic | 30.0% | |
| TGTGCAGTAAATAAGTGAAT+TGG | + | chr5_4:9785637-9785656 | Msa0836310:intron | 30.0% | |
| GTGCAGTAAATAAGTGAATT+GGG | + | chr5_4:9785638-9785657 | Msa0836310:intron | 30.0% | |
| ! | AGAATTTTAGATGGAGATGA+AGG | + | chr5_4:9785719-9785738 | Msa0836310:intron | 30.0% |
| TAATCAACAGCGATGAAATT+TGG | - | chr5_4:9785926-9785945 | None:intergenic | 30.0% | |
| CATCAAATCGTTAATCACAA+AGG | + | chr5_4:9785981-9786000 | Msa0836310:intron | 30.0% | |
| TGATGGTTATGATGTTATAG+AGG | + | chr5_4:9786029-9786048 | Msa0836310:intron | 30.0% | |
| GTTCTTACTAAATATGGAAC+AGG | - | chr5_4:9786529-9786548 | None:intergenic | 30.0% | |
| AAGATGGTGATTATTTCAGA+TGG | - | chr5_4:9785276-9785295 | None:intergenic | 30.0% | |
| TGTGCAGTAAATAAGTGAAT+TGG | + | chr5_4:9785637-9785656 | Msa0836310:intron | 30.0% | |
| GTGCAGTAAATAAGTGAATT+GGG | + | chr5_4:9785638-9785657 | Msa0836310:intron | 30.0% | |
| ! | AGAATTTTAGATGGAGATGA+AGG | + | chr5_4:9785719-9785738 | Msa0836310:intron | 30.0% |
| TAATCAACAGCGATGAAATT+TGG | - | chr5_4:9785926-9785945 | None:intergenic | 30.0% | |
| CATCAAATCGTTAATCACAA+AGG | + | chr5_4:9785981-9786000 | Msa0836310:intron | 30.0% | |
| TGATGGTTATGATGTTATAG+AGG | + | chr5_4:9786029-9786048 | Msa0836310:intron | 30.0% | |
| GTTCTTACTAAATATGGAAC+AGG | - | chr5_4:9786529-9786548 | None:intergenic | 30.0% | |
| ! | CGATAAATCGTTGATTGTTC+AGG | - | chr5_4:9785431-9785450 | None:intergenic | 35.0% |
| ! | CTAGATTTTGTGTTCATTGG+TGG | - | chr5_4:9785782-9785801 | None:intergenic | 35.0% |
| CACCAATGAACACAAAATCT+AGG | + | chr5_4:9785780-9785799 | Msa0836310:CDS | 35.0% | |
| ! | GACCTAGATTTTGTGTTCAT+TGG | - | chr5_4:9785785-9785804 | None:intergenic | 35.0% |
| GTCTTCATCATGCTAAGTAA+TGG | - | chr5_4:9785875-9785894 | None:intergenic | 35.0% | |
| ! | CATCGCTGTTGATTATTATC+AGG | + | chr5_4:9785931-9785950 | Msa0836310:CDS | 35.0% |
| ATGATGTTATAGAGGAGTGA+TGG | + | chr5_4:9786037-9786056 | Msa0836310:intron | 35.0% | |
| !!! | CTCAGTTATTTTAGTACGGT+GGG | - | chr5_4:9786256-9786275 | None:intergenic | 35.0% |
| !!! | ACTCAGTTATTTTAGTACGG+TGG | - | chr5_4:9786257-9786276 | None:intergenic | 35.0% |
| ! | CGATAAATCGTTGATTGTTC+AGG | - | chr5_4:9785431-9785450 | None:intergenic | 35.0% |
| ! | CTAGATTTTGTGTTCATTGG+TGG | - | chr5_4:9785782-9785801 | None:intergenic | 35.0% |
| CACCAATGAACACAAAATCT+AGG | + | chr5_4:9785780-9785799 | Msa0836310:CDS | 35.0% | |
| ! | GACCTAGATTTTGTGTTCAT+TGG | - | chr5_4:9785785-9785804 | None:intergenic | 35.0% |
| GTCTTCATCATGCTAAGTAA+TGG | - | chr5_4:9785875-9785894 | None:intergenic | 35.0% | |
| ! | CATCGCTGTTGATTATTATC+AGG | + | chr5_4:9785931-9785950 | Msa0836310:CDS | 35.0% |
| ATGATGTTATAGAGGAGTGA+TGG | + | chr5_4:9786037-9786056 | Msa0836310:intron | 35.0% | |
| !!! | CTCAGTTATTTTAGTACGGT+GGG | - | chr5_4:9786256-9786275 | None:intergenic | 35.0% |
| !!! | ACTCAGTTATTTTAGTACGG+TGG | - | chr5_4:9786257-9786276 | None:intergenic | 35.0% |
| TAGAGACATGCGTTCATTTC+TGG | + | chr5_4:9785242-9785261 | Msa0836310:CDS | 40.0% | |
| AGCTTGGAAGACCTTAGTTA+GGG | - | chr5_4:9785328-9785347 | None:intergenic | 40.0% | |
| AAGCTTGGAAGACCTTAGTT+AGG | - | chr5_4:9785329-9785348 | None:intergenic | 40.0% | |
| GATTAACAGGTACATGTTCC+CGG | + | chr5_4:9785353-9785372 | Msa0836310:CDS | 40.0% | |
| AGGCATGCAATTACTCACAT+TGG | - | chr5_4:9785524-9785543 | None:intergenic | 40.0% | |
| !! | TTTCGATTTGGACAAGAACC+CGG | - | chr5_4:9785752-9785771 | None:intergenic | 40.0% |
| ATGTTATAGAGGAGTGATGG+TGG | + | chr5_4:9786040-9786059 | Msa0836310:intron | 40.0% | |
| TGACAGCATTGCTTATTGCA+AGG | + | chr5_4:9786114-9786133 | Msa0836310:intron | 40.0% | |
| GTGCGAAATGAACAAAATGC+TGG | + | chr5_4:9786489-9786508 | Msa0836310:intron | 40.0% | |
| TAGAGACATGCGTTCATTTC+TGG | + | chr5_4:9785242-9785261 | Msa0836310:CDS | 40.0% | |
| AGCTTGGAAGACCTTAGTTA+GGG | - | chr5_4:9785328-9785347 | None:intergenic | 40.0% | |
| AAGCTTGGAAGACCTTAGTT+AGG | - | chr5_4:9785329-9785348 | None:intergenic | 40.0% | |
| GATTAACAGGTACATGTTCC+CGG | + | chr5_4:9785353-9785372 | Msa0836310:CDS | 40.0% | |
| AGGCATGCAATTACTCACAT+TGG | - | chr5_4:9785524-9785543 | None:intergenic | 40.0% | |
| !! | TTTCGATTTGGACAAGAACC+CGG | - | chr5_4:9785752-9785771 | None:intergenic | 40.0% |
| ATGTTATAGAGGAGTGATGG+TGG | + | chr5_4:9786040-9786059 | Msa0836310:intron | 40.0% | |
| TGACAGCATTGCTTATTGCA+AGG | + | chr5_4:9786114-9786133 | Msa0836310:intron | 40.0% | |
| GTGCGAAATGAACAAAATGC+TGG | + | chr5_4:9786489-9786508 | Msa0836310:intron | 40.0% | |
| ACTAAGGTCTTCCAAGCTTC+AGG | + | chr5_4:9785330-9785349 | Msa0836310:CDS | 45.0% | |
| CTAAGGTCTTCCAAGCTTCA+GGG | + | chr5_4:9785331-9785350 | Msa0836310:CDS | 45.0% | |
| TCCAAGCTTCAGGGATTAAC+AGG | + | chr5_4:9785340-9785359 | Msa0836310:CDS | 45.0% | |
| ACCTGTTAATCCCTGAAGCT+TGG | - | chr5_4:9785344-9785363 | None:intergenic | 45.0% | |
| AGGATCATGTCATCGACAAC+AGG | - | chr5_4:9785411-9785430 | None:intergenic | 45.0% | |
| ATTCTCCTCGAGATCATCCA+AGG | + | chr5_4:9785452-9785471 | Msa0836310:CDS | 45.0% | |
| ACGACGTATTTCCACGTGAA+AGG | - | chr5_4:9785495-9785514 | None:intergenic | 45.0% | |
| ! | TGGAGATGAAGGTATGCAAC+CGG | + | chr5_4:9785730-9785749 | Msa0836310:CDS | 45.0% |
| GGTGGCGATTCATTTCGATT+TGG | - | chr5_4:9785764-9785783 | None:intergenic | 45.0% | |
| TTCTACACCGAATCGTTCTC+AGG | + | chr5_4:9785829-9785848 | Msa0836310:CDS | 45.0% | |
| CAGCGATGAAATTTGGCCAT+CGG | - | chr5_4:9785919-9785938 | None:intergenic | 45.0% | |
| !! | TTATAGAGGAGTGATGGTGG+AGG | + | chr5_4:9786043-9786062 | Msa0836310:intron | 45.0% |
| TTTGCTGCATCAACAGCTTG+TGG | - | chr5_4:9786073-9786092 | None:intergenic | 45.0% | |
| CAAGCTGTTGATGCAGCAAA+TGG | + | chr5_4:9786073-9786092 | Msa0836310:CDS | 45.0% | |
| GCAAATGGTCATCTCACTTG+TGG | + | chr5_4:9786088-9786107 | Msa0836310:intron | 45.0% | |
| TTGAGTAGGGAACATTGAGC+AGG | - | chr5_4:9786699-9786718 | None:intergenic | 45.0% | |
| ACTAAGGTCTTCCAAGCTTC+AGG | + | chr5_4:9785330-9785349 | Msa0836310:CDS | 45.0% | |
| CTAAGGTCTTCCAAGCTTCA+GGG | + | chr5_4:9785331-9785350 | Msa0836310:CDS | 45.0% | |
| TCCAAGCTTCAGGGATTAAC+AGG | + | chr5_4:9785340-9785359 | Msa0836310:CDS | 45.0% | |
| ACCTGTTAATCCCTGAAGCT+TGG | - | chr5_4:9785344-9785363 | None:intergenic | 45.0% | |
| AGGATCATGTCATCGACAAC+AGG | - | chr5_4:9785411-9785430 | None:intergenic | 45.0% | |
| ATTCTCCTCGAGATCATCCA+AGG | + | chr5_4:9785452-9785471 | Msa0836310:CDS | 45.0% | |
| ACGACGTATTTCCACGTGAA+AGG | - | chr5_4:9785495-9785514 | None:intergenic | 45.0% | |
| ! | TGGAGATGAAGGTATGCAAC+CGG | + | chr5_4:9785730-9785749 | Msa0836310:CDS | 45.0% |
| GGTGGCGATTCATTTCGATT+TGG | - | chr5_4:9785764-9785783 | None:intergenic | 45.0% | |
| TTCTACACCGAATCGTTCTC+AGG | + | chr5_4:9785829-9785848 | Msa0836310:CDS | 45.0% | |
| CAGCGATGAAATTTGGCCAT+CGG | - | chr5_4:9785919-9785938 | None:intergenic | 45.0% | |
| !! | TTATAGAGGAGTGATGGTGG+AGG | + | chr5_4:9786043-9786062 | Msa0836310:intron | 45.0% |
| TTTGCTGCATCAACAGCTTG+TGG | - | chr5_4:9786073-9786092 | None:intergenic | 45.0% | |
| CAAGCTGTTGATGCAGCAAA+TGG | + | chr5_4:9786073-9786092 | Msa0836310:CDS | 45.0% | |
| GCAAATGGTCATCTCACTTG+TGG | + | chr5_4:9786088-9786107 | Msa0836310:intron | 45.0% | |
| TTGAGTAGGGAACATTGAGC+AGG | - | chr5_4:9786699-9786718 | None:intergenic | 45.0% | |
| TCTCTAAGCGCGTTTACTGC+AGG | - | chr5_4:9785228-9785247 | None:intergenic | 50.0% | |
| AAGACCTTAGTTAGGGCTGC+AGG | - | chr5_4:9785321-9785340 | None:intergenic | 50.0% | |
| AACAGGTACATGTTCCCGGT+TGG | + | chr5_4:9785357-9785376 | Msa0836310:CDS | 50.0% | |
| TGCTTCCTTGGATGATCTCG+AGG | - | chr5_4:9785460-9785479 | None:intergenic | 50.0% | |
| TCATCCAAGGAAGCAGCTGA+AGG | + | chr5_4:9785465-9785484 | Msa0836310:CDS | 50.0% | |
| AATGCCTTCAGCTGCTTCCT+TGG | - | chr5_4:9785472-9785491 | None:intergenic | 50.0% | |
| !! | CTGAAGGCATTCCTTTCACG+TGG | + | chr5_4:9785481-9785500 | Msa0836310:CDS | 50.0% |
| ! | GGAGATGAAGGTATGCAACC+GGG | + | chr5_4:9785731-9785750 | Msa0836310:CDS | 50.0% |
| AAGACTTGCCATGAAGCTGC+CGG | + | chr5_4:9785890-9785909 | Msa0836310:CDS | 50.0% | |
| ! | GAAATTTGGCCATCGGTTGC+CGG | - | chr5_4:9785912-9785931 | None:intergenic | 50.0% |
| TCTCTAAGCGCGTTTACTGC+AGG | - | chr5_4:9785228-9785247 | None:intergenic | 50.0% | |
| AAGACCTTAGTTAGGGCTGC+AGG | - | chr5_4:9785321-9785340 | None:intergenic | 50.0% | |
| AACAGGTACATGTTCCCGGT+TGG | + | chr5_4:9785357-9785376 | Msa0836310:CDS | 50.0% | |
| TGCTTCCTTGGATGATCTCG+AGG | - | chr5_4:9785460-9785479 | None:intergenic | 50.0% | |
| TCATCCAAGGAAGCAGCTGA+AGG | + | chr5_4:9785465-9785484 | Msa0836310:CDS | 50.0% | |
| AATGCCTTCAGCTGCTTCCT+TGG | - | chr5_4:9785472-9785491 | None:intergenic | 50.0% | |
| !! | CTGAAGGCATTCCTTTCACG+TGG | + | chr5_4:9785481-9785500 | Msa0836310:CDS | 50.0% |
| ! | GGAGATGAAGGTATGCAACC+GGG | + | chr5_4:9785731-9785750 | Msa0836310:CDS | 50.0% |
| AAGACTTGCCATGAAGCTGC+CGG | + | chr5_4:9785890-9785909 | Msa0836310:CDS | 50.0% | |
| ! | GAAATTTGGCCATCGGTTGC+CGG | - | chr5_4:9785912-9785931 | None:intergenic | 50.0% |
| AGCTCCTGCAGCCCTAACTA+AGG | + | chr5_4:9785314-9785333 | Msa0836310:CDS | 55.0% | |
| GGTACATGTTCCCGGTTGGT+CGG | + | chr5_4:9785361-9785380 | Msa0836310:CDS | 55.0% | |
| TTCTTGGGCAACCGACCAAC+CGG | - | chr5_4:9785375-9785394 | None:intergenic | 55.0% | |
| GTTGGTCGGTTGCCCAAGAA+CGG | + | chr5_4:9785375-9785394 | Msa0836310:CDS | 55.0% | |
| TGCCCAAGAACGGTAGCGAT+TGG | + | chr5_4:9785385-9785404 | Msa0836310:CDS | 55.0% | |
| GGCCAATCGCTACCGTTCTT+GGG | - | chr5_4:9785390-9785409 | None:intergenic | 55.0% | |
| AGGCCAATCGCTACCGTTCT+TGG | - | chr5_4:9785391-9785410 | None:intergenic | 55.0% | |
| CCACAGGCCTGAGAACGATT+CGG | - | chr5_4:9785839-9785858 | None:intergenic | 55.0% | |
| TGGAGCTGAATTGTCGCCAC+AGG | - | chr5_4:9785855-9785874 | None:intergenic | 55.0% | |
| AGCTCCTGCAGCCCTAACTA+AGG | + | chr5_4:9785314-9785333 | Msa0836310:CDS | 55.0% | |
| GGTACATGTTCCCGGTTGGT+CGG | + | chr5_4:9785361-9785380 | Msa0836310:CDS | 55.0% | |
| TTCTTGGGCAACCGACCAAC+CGG | - | chr5_4:9785375-9785394 | None:intergenic | 55.0% | |
| GTTGGTCGGTTGCCCAAGAA+CGG | + | chr5_4:9785375-9785394 | Msa0836310:CDS | 55.0% | |
| TGCCCAAGAACGGTAGCGAT+TGG | + | chr5_4:9785385-9785404 | Msa0836310:CDS | 55.0% | |
| GGCCAATCGCTACCGTTCTT+GGG | - | chr5_4:9785390-9785409 | None:intergenic | 55.0% | |
| AGGCCAATCGCTACCGTTCT+TGG | - | chr5_4:9785391-9785410 | None:intergenic | 55.0% | |
| CCACAGGCCTGAGAACGATT+CGG | - | chr5_4:9785839-9785858 | None:intergenic | 55.0% | |
| TGGAGCTGAATTGTCGCCAC+AGG | - | chr5_4:9785855-9785874 | None:intergenic | 55.0% | |
| TCTTGGGCAACCGACCAACC+GGG | - | chr5_4:9785374-9785393 | None:intergenic | 60.0% | |
| CCGAATCGTTCTCAGGCCTG+TGG | + | chr5_4:9785836-9785855 | Msa0836310:CDS | 60.0% | |
| ATCGGTTGCCGGCAGCTTCA+TGG | - | chr5_4:9785901-9785920 | None:intergenic | 60.0% | |
| ATGAAGCTGCCGGCAACCGA+TGG | + | chr5_4:9785900-9785919 | Msa0836310:CDS | 60.0% | |
| TCTTGGGCAACCGACCAACC+GGG | - | chr5_4:9785374-9785393 | None:intergenic | 60.0% | |
| CCGAATCGTTCTCAGGCCTG+TGG | + | chr5_4:9785836-9785855 | Msa0836310:CDS | 60.0% | |
| ATCGGTTGCCGGCAGCTTCA+TGG | - | chr5_4:9785901-9785920 | None:intergenic | 60.0% | |
| ATGAAGCTGCCGGCAACCGA+TGG | + | chr5_4:9785900-9785919 | Msa0836310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9785201 | 9786759 | 9785201 | ID=Msa0836310;Name=Msa0836310 |
| chr5_4 | mRNA | 9785201 | 9786759 | 9785201 | ID=Msa0836310-mRNA-1;Parent=Msa0836310;Name=Msa0836310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.66|0.25|0.75|1|1|4|0|207 |
| chr5_4 | exon | 9785201 | 9785525 | 9785201 | ID=Msa0836310-mRNA-1:exon:4312;Parent=Msa0836310-mRNA-1 |
| chr5_4 | exon | 9785729 | 9785952 | 9785729 | ID=Msa0836310-mRNA-1:exon:4313;Parent=Msa0836310-mRNA-1 |
| chr5_4 | exon | 9786049 | 9786094 | 9786049 | ID=Msa0836310-mRNA-1:exon:4314;Parent=Msa0836310-mRNA-1 |
| chr5_4 | exon | 9786731 | 9786759 | 9786731 | ID=Msa0836310-mRNA-1:exon:4315;Parent=Msa0836310-mRNA-1 |
| chr5_4 | CDS | 9785201 | 9785525 | 9785201 | ID=Msa0836310-mRNA-1:cds;Parent=Msa0836310-mRNA-1 |
| chr5_4 | CDS | 9785729 | 9785952 | 9785729 | ID=Msa0836310-mRNA-1:cds;Parent=Msa0836310-mRNA-1 |
| chr5_4 | CDS | 9786049 | 9786094 | 9786049 | ID=Msa0836310-mRNA-1:cds;Parent=Msa0836310-mRNA-1 |
| chr5_4 | CDS | 9786731 | 9786759 | 9786731 | ID=Msa0836310-mRNA-1:cds;Parent=Msa0836310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
