Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343030 | XP_039690096.1 | 96.806 | 407 | 13 | 0 | 1 | 407 | 1 | 407 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343030 | sp|Q93XX5|Y5713_ARATH | 47.989 | 348 | 178 | 1 | 21 | 365 | 35 | 382 | 5.61e-128 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343030 | G7K6M0 | 96.806 | 407 | 13 | 0 | 1 | 407 | 1 | 407 | 0.0 | 826 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0200840 | Msa0343030 | -0.860856 | 1.542193e-63 | -8.615850e-47 |
| Msa0200870 | Msa0343030 | -0.851304 | 9.684019e-61 | -8.615850e-47 |
| Msa0243470 | Msa0343030 | -0.855790 | 4.981407e-62 | -8.615850e-47 |
| Msa0243820 | Msa0343030 | -0.840769 | 7.120632e-58 | -8.615850e-47 |
| Msa0281940 | Msa0343030 | -0.847451 | 1.147120e-59 | -8.615850e-47 |
| Msa0282500 | Msa0343030 | -0.841918 | 3.550100e-58 | -8.615850e-47 |
| Msa0343030 | Msa0358290 | -0.807767 | 4.302678e-50 | -8.615850e-47 |
| Msa0343030 | Msa0363460 | -0.805711 | 1.169665e-49 | -8.615850e-47 |
| Msa0343030 | Msa0411000 | -0.804924 | 1.710234e-49 | -8.615850e-47 |
| Msa0343030 | Msa0455230 | -0.812378 | 4.370168e-51 | -8.615850e-47 |
| Msa0343030 | Msa0534420 | -0.805045 | 1.613016e-49 | -8.615850e-47 |
| Msa0343030 | Msa0713110 | 0.960423 | 1.534991e-118 | -8.615850e-47 |
| Msa0343030 | Msa0714340 | -0.812214 | 4.745571e-51 | -8.615850e-47 |
| Msa0343030 | Msa0714380 | -0.823061 | 1.695961e-53 | -8.615850e-47 |
| Msa0343030 | Msa0756800 | 0.950714 | 9.303486e-109 | -8.615850e-47 |
| Msa0343030 | Msa0763880 | -0.804051 | 2.600322e-49 | -8.615850e-47 |
| Msa0343030 | Msa0836310 | 0.866984 | 1.911568e-65 | -8.615850e-47 |
| Msa0343030 | Msa1198450 | -0.837286 | 5.686163e-57 | -8.615850e-47 |
| Msa0343030 | Msa1292730 | -0.835045 | 2.108450e-56 | -8.615850e-47 |
| Msa0343030 | Msa1396090 | -0.842302 | 2.809380e-58 | -8.615850e-47 |
| Msa0343030 | Msa1421870 | -0.801276 | 9.718872e-49 | -8.615850e-47 |
| Msa0343030 | Msa1428560 | -0.839449 | 1.573708e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343030 | MtrunA17_Chr5g0402081 | 96.806 | 407 | 13 | 0 | 1 | 407 | 1 | 407 | 0.0 | 826 |
| Msa0343030 | MtrunA17_Chr4g0044651 | 63.243 | 370 | 126 | 5 | 1 | 360 | 1 | 370 | 0.0 | 509 |
| Msa0343030 | MtrunA17_Chr4g0053041 | 51.105 | 362 | 166 | 3 | 8 | 358 | 22 | 383 | 1.94e-135 | 394 |
| Msa0343030 | MtrunA17_Chr5g0401931 | 47.558 | 389 | 188 | 3 | 21 | 393 | 27 | 415 | 3.77e-132 | 385 |
| Msa0343030 | MtrunA17_Chr7g0219811 | 47.945 | 365 | 178 | 4 | 1 | 354 | 1 | 364 | 1.30e-128 | 375 |
| Msa0343030 | MtrunA17_Chr4g0044681 | 50.789 | 317 | 145 | 3 | 20 | 332 | 23 | 332 | 8.33e-120 | 351 |
| Msa0343030 | MtrunA17_Chr5g0419671 | 45.643 | 241 | 111 | 2 | 124 | 364 | 13 | 233 | 9.19e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343030 | AT4G36945.1 | 57.178 | 404 | 166 | 4 | 6 | 406 | 9 | 408 | 1.19e-173 | 491 |
| Msa0343030 | AT1G49740.1 | 61.765 | 340 | 127 | 1 | 13 | 349 | 20 | 359 | 2.72e-160 | 455 |
| Msa0343030 | AT3G19310.1 | 54.040 | 396 | 168 | 4 | 17 | 407 | 24 | 410 | 5.30e-159 | 454 |
| Msa0343030 | AT5G67130.1 | 47.989 | 348 | 178 | 1 | 21 | 365 | 35 | 382 | 5.70e-129 | 378 |
| Msa0343030 | AT1G13680.1 | 45.536 | 336 | 169 | 4 | 11 | 342 | 21 | 346 | 1.43e-109 | 326 |
Find 126 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGACATGCGTTCATTTC+TGG | 0.130652 | 3_1:-1057019 | Msa0343030:CDS |
| TATAAAGATGAAACGATTTA+TGG | 0.146226 | 3_1:-1055398 | Msa0343030:three_prime_UTR |
| TTTCATCACTCGGCACTTTA+TGG | 0.185673 | 3_1:-1055695 | Msa0343030:three_prime_UTR |
| GCAGGTGGAGGTGGAGAAAT+TGG | 0.207822 | 3_1:+1055973 | None:intergenic |
| TAATCAACAGCGATGAAATT+TGG | 0.242073 | 3_1:+1056338 | None:intergenic |
| AAAGATACAAACTTTGTTAA+TGG | 0.244124 | 3_1:+1059165 | None:intergenic |
| TTGTTTGCTTGACTATTATT+AGG | 0.258950 | 3_1:+1055916 | None:intergenic |
| TTTGGTTACCACAACTTTCT+TGG | 0.259872 | 3_1:-1055845 | Msa0343030:CDS |
| AGGCCAATCGCTACCGTTCT+TGG | 0.277242 | 3_1:+1056873 | None:intergenic |
| GGCTTGCTCCAGCTCAAATT+TGG | 0.281003 | 3_1:+1055557 | None:intergenic |
| TAAATCGTTTCATCTTTATA+AGG | 0.301830 | 3_1:+1055401 | None:intergenic |
| AAGATACAAACTTTGTTAAT+GGG | 0.302320 | 3_1:+1059166 | None:intergenic |
| CATCGCTGTTGATTATTATC+AGG | 0.302636 | 3_1:-1056330 | Msa0343030:intron |
| ACTAAGGTCTTCCAAGCTTC+AGG | 0.304715 | 3_1:-1056931 | Msa0343030:CDS |
| TCTTTCATAAGAAGTGATTA+AGG | 0.314991 | 3_1:+1059791 | None:intergenic |
| TCCAAGCTTCAGGGATTAAC+AGG | 0.322189 | 3_1:-1056921 | Msa0343030:CDS |
| CGATAAATCGTTGATTGTTC+AGG | 0.322795 | 3_1:+1056833 | None:intergenic |
| GACTATTATTAGGAGACTTC+TGG | 0.327242 | 3_1:+1055926 | None:intergenic |
| TTCTTGGGCAACCGACCAAC+CGG | 0.355141 | 3_1:+1056889 | None:intergenic |
| AAGCTTGGAAGACCTTAGTT+AGG | 0.355874 | 3_1:+1056935 | None:intergenic |
| AATGCCTTCAGCTGCTTCCT+TGG | 0.356856 | 3_1:+1056792 | None:intergenic |
| TGACGATTAATACAAAGATT+TGG | 0.359042 | 3_1:+1059417 | None:intergenic |
| GGACGTGTATTTCCATTTGC+AGG | 0.360507 | 3_1:+1059217 | None:intergenic |
| GACGCATAATTCATTTGCTT+TGG | 0.361385 | 3_1:-1059015 | Msa0343030:CDS |
| AGATAGCAACAGAAAGGATA+TGG | 0.370036 | 3_1:+1059715 | None:intergenic |
| AGATAGTATCCTGCTACATC+TGG | 0.382095 | 3_1:+1059195 | None:intergenic |
| CATAATTCATTTGCTTTGGC+TGG | 0.382844 | 3_1:-1059011 | Msa0343030:CDS |
| ATCGGTTGCCGGCAGCTTCA+TGG | 0.383161 | 3_1:+1056363 | None:intergenic |
| GGAGACTTCTGGTTTCCATT+TGG | 0.388451 | 3_1:+1055937 | None:intergenic |
| TGAAAGGTTTGCCGTTTAAT+CGG | 0.388517 | 3_1:-1059052 | Msa0343030:CDS |
| CACATATTCATCCAGCTTGA+AGG | 0.392390 | 3_1:-1059384 | Msa0343030:intron |
| AACCATGAATACCGATTAAA+CGG | 0.395061 | 3_1:+1059041 | None:intergenic |
| GAAATTTGGCCATCGGTTGC+CGG | 0.398958 | 3_1:+1056352 | None:intergenic |
| TGCCGTTTAATCGGTATTCA+TGG | 0.399726 | 3_1:-1059043 | Msa0343030:CDS |
| TGATTCCTAGTGTTATTGTA+TGG | 0.400563 | 3_1:-1055732 | Msa0343030:three_prime_UTR |
| GTTGAATGATTCACAACTAT+TGG | 0.409661 | 3_1:-1055653 | Msa0343030:three_prime_UTR |
| GTTCAGGCAAATGCTACGTT+TGG | 0.417266 | 3_1:-1056012 | Msa0343030:intron |
| TTTGGTGCAGCTTCTGAAGC+AGG | 0.424534 | 3_1:+1055955 | None:intergenic |
| GGTGGCGATTCATTTCGATT+TGG | 0.434330 | 3_1:+1056500 | None:intergenic |
| GATTAACAGGTACATGTTCC+CGG | 0.438116 | 3_1:-1056908 | Msa0343030:CDS |
| TGGAGATGAAGGTATGCAAC+CGG | 0.442403 | 3_1:-1056531 | Msa0343030:CDS |
| TTCTACACCGAATCGTTCTC+AGG | 0.443945 | 3_1:-1056432 | Msa0343030:CDS |
| AATAATCACCATCTTTATTG+AGG | 0.452937 | 3_1:-1056980 | Msa0343030:CDS |
| GCTTCAGAAGCTGCACCAAA+TGG | 0.457578 | 3_1:-1055952 | Msa0343030:CDS |
| CTAAGGTCTTCCAAGCTTCA+GGG | 0.460500 | 3_1:-1056930 | Msa0343030:CDS |
| TGTCAAACATGTCCTGCAAA+TGG | 0.461549 | 3_1:-1059229 | Msa0343030:CDS |
| GGCCAATCGCTACCGTTCTT+GGG | 0.461898 | 3_1:+1056874 | None:intergenic |
| GCTTCTGAAGCAGGTGGAGG+TGG | 0.462827 | 3_1:+1055964 | None:intergenic |
| AATTATTATTACCTTCAAGC+TGG | 0.464784 | 3_1:+1059373 | None:intergenic |
| ACTCTCTTTATACAGCTGTC+AGG | 0.475142 | 3_1:-1055374 | Msa0343030:three_prime_UTR |
| AGGATCATGTCATCGACAAC+AGG | 0.476366 | 3_1:+1056853 | None:intergenic |
| AATGATAATGTGAAGGTGAA+AGG | 0.477711 | 3_1:-1059068 | Msa0343030:intron |
| GTATGGTTGTGTCATTCTAC+TGG | 0.479005 | 3_1:-1057217 | Msa0343030:CDS |
| CAAGCAAACAATGCATATAG+TGG | 0.479069 | 3_1:-1055904 | Msa0343030:CDS |
| CTCTCTTTATACAGCTGTCA+GGG | 0.493580 | 3_1:-1055373 | Msa0343030:three_prime_UTR |
| ATAGTGTCATCCTGGTTCAT+AGG | 0.494246 | 3_1:+1058954 | None:intergenic |
| ACCTGTTAATCCCTGAAGCT+TGG | 0.494888 | 3_1:+1056920 | None:intergenic |
| AACATAATCCTCAATAAAGA+TGG | 0.496490 | 3_1:+1056972 | None:intergenic |
| AAGATGGTGATTATTTCAGA+TGG | 0.501112 | 3_1:+1056988 | None:intergenic |
| GTGAACTACCAAATTTGAGC+TGG | 0.503350 | 3_1:-1055565 | Msa0343030:three_prime_UTR |
| GCAATTGGCTGTGTTAACTT+TGG | 0.505904 | 3_1:-1055863 | Msa0343030:CDS |
| AACTGAGATCTAGTGAAGAT+TGG | 0.507225 | 3_1:-1055506 | Msa0343030:three_prime_UTR |
| AAGACCTTAGTTAGGGCTGC+AGG | 0.507313 | 3_1:+1056943 | None:intergenic |
| ATGAGGTAGGCATCAATTGT+GGG | 0.507567 | 3_1:-1055479 | Msa0343030:three_prime_UTR |
| CAAGCTGTTGATGCAGCAAA+TGG | 0.512280 | 3_1:-1056188 | Msa0343030:CDS |
| AGCTCCTGCAGCCCTAACTA+AGG | 0.514774 | 3_1:-1056947 | Msa0343030:CDS |
| GATGAGGTAGGCATCAATTG+TGG | 0.517383 | 3_1:-1055480 | Msa0343030:three_prime_UTR |
| AGCTTGGAAGACCTTAGTTA+GGG | 0.519986 | 3_1:+1056936 | None:intergenic |
| CTGAAGGCATTCCTTTCACA+TGG | 0.523543 | 3_1:-1056780 | Msa0343030:CDS |
| ATGAAGCTGCCGGCAACCGA+TGG | 0.525241 | 3_1:-1056361 | Msa0343030:CDS |
| TGCCCAAGAACGGTAGCGAT+TGG | 0.526103 | 3_1:-1056876 | Msa0343030:CDS |
| CACCAATGAACACAAAATCT+AGG | 0.527509 | 3_1:-1056481 | Msa0343030:CDS |
| TTTATAAGGTATCTCATAAG+TGG | 0.529772 | 3_1:+1055415 | None:intergenic |
| AACAGCTATGATGATGCAAT+TGG | 0.530409 | 3_1:-1055878 | Msa0343030:CDS |
| GTCTTCATCATGCTAAGTAA+TGG | 0.532104 | 3_1:+1056389 | None:intergenic |
| TTACCACAACTTTCTTGGCA+TGG | 0.532874 | 3_1:-1055840 | Msa0343030:CDS |
| ACGACGTATTTCCATGTGAA+AGG | 0.536792 | 3_1:+1056769 | None:intergenic |
| TAAACACAAAAGTAGAATGA+AGG | 0.537079 | 3_1:-1059623 | Msa0343030:intron |
| AGATACAAACTTTGTTAATG+GGG | 0.540888 | 3_1:+1059167 | None:intergenic |
| TCTCTAAGCGCGTTTACTGC+AGG | 0.540953 | 3_1:+1057036 | None:intergenic |
| TTTCGATTTGGACAAGAACC+CGG | 0.547317 | 3_1:+1056512 | None:intergenic |
| CAGCGATGAAATTTGGCCAT+CGG | 0.549318 | 3_1:+1056345 | None:intergenic |
| GTTGGTCGGTTGCCCAAGAA+CGG | 0.555167 | 3_1:-1056886 | Msa0343030:CDS |
| CCACAGGCCTGAGAACGATT+CGG | 0.555778 | 3_1:+1056425 | None:intergenic |
| ATATGGATTTGTGAAGGAAG+AGG | 0.558800 | 3_1:+1059732 | None:intergenic |
| GCAGCTTCTGAAGCAGGTGG+AGG | 0.559293 | 3_1:+1055961 | None:intergenic |
| TTATAGAGGAGTGATGGTGG+AGG | 0.564560 | 3_1:-1056218 | Msa0343030:intron |
| GATCAGCAATAGTGTCATCC+TGG | 0.565278 | 3_1:+1058946 | None:intergenic |
| GATAGTATCCTGCTACATCT+GGG | 0.566644 | 3_1:+1059196 | None:intergenic |
| ATACACGTCCCAGATGTAGC+AGG | 0.568124 | 3_1:-1059204 | Msa0343030:CDS |
| AAGACTTGCCATGAAGCTGC+CGG | 0.572214 | 3_1:-1056371 | Msa0343030:CDS |
| AGTTCACTTAAGAAACTTGT+CGG | 0.573594 | 3_1:+1055581 | None:intergenic |
| AGTTGAAGATAGCAACAGAA+AGG | 0.574228 | 3_1:+1059709 | None:intergenic |
| TGCTTCCTTGGATGATCTCG+AGG | 0.574515 | 3_1:+1056804 | None:intergenic |
| GAAGATTGGTTAGATGAGGT+AGG | 0.577291 | 3_1:-1055492 | Msa0343030:three_prime_UTR |
| TGGAGCTGAATTGTCGCCAC+AGG | 0.577474 | 3_1:+1056409 | None:intergenic |
| TGACAGCATTGCTTATTGCA+AGG | 0.578759 | 3_1:-1056147 | Msa0343030:intron |
| TAGTGAAGATTGGTTAGATG+AGG | 0.581454 | 3_1:-1055496 | Msa0343030:three_prime_UTR |
| TCTTAACAGAATGGTGTTCG+AGG | 0.581911 | 3_1:-1057274 | Msa0343030:intron |
| ATGTTATAGAGGAGTGATGG+TGG | 0.584052 | 3_1:-1056221 | Msa0343030:intron |
| GAAAGGATATGGATTTGTGA+AGG | 0.585887 | 3_1:+1059726 | None:intergenic |
| TAACCATGCCAAGAAAGTTG+TGG | 0.588617 | 3_1:+1055837 | None:intergenic |
| TATCCTTGCACCTATGAACC+AGG | 0.595518 | 3_1:-1058964 | Msa0343030:CDS |
| GCTGGTGCAAGATCAGCCAC+AGG | 0.596230 | 3_1:-1058993 | Msa0343030:CDS |
| ATGATGTTATAGAGGAGTGA+TGG | 0.597245 | 3_1:-1056224 | Msa0343030:intron |
| GGTACATGTTCCCGGTTGGT+CGG | 0.601217 | 3_1:-1056900 | Msa0343030:CDS |
| ACATGCGGTTCATGTGATGC+TGG | 0.602805 | 3_1:-1059259 | Msa0343030:CDS |
| AACAGGTACATGTTCCCGGT+TGG | 0.603434 | 3_1:-1056904 | Msa0343030:CDS |
| TCTTGGGCAACCGACCAACC+GGG | 0.611820 | 3_1:+1056890 | None:intergenic |
| TCATCCAAGGAAGCAGCTGA+AGG | 0.614391 | 3_1:-1056796 | Msa0343030:CDS |
| GCAAATGGTCATCTCACTTG+TGG | 0.614406 | 3_1:-1056173 | Msa0343030:CDS |
| ATTCTCCTCGAGATCATCCA+AGG | 0.615003 | 3_1:-1056809 | Msa0343030:CDS |
| TTTGCTGCATCAACAGCTTG+TGG | 0.623142 | 3_1:+1056191 | None:intergenic |
| GGAGATGAAGGTATGCAACC+GGG | 0.627950 | 3_1:-1056530 | Msa0343030:CDS |
| CATCCTGGTTCATAGGTGCA+AGG | 0.632672 | 3_1:+1058961 | None:intergenic |
| TGAGGTAGGCATCAATTGTG+GGG | 0.634988 | 3_1:-1055478 | Msa0343030:three_prime_UTR |
| GGTGCAGCTTCTGAAGCAGG+TGG | 0.637388 | 3_1:+1055958 | None:intergenic |
| TGGTTGTGTCATTCTACTGG+AGG | 0.640950 | 3_1:-1057214 | Msa0343030:CDS |
| GGTGGAGGTGGAGAAATTGG+AGG | 0.643553 | 3_1:+1055976 | None:intergenic |
| TCTCTTTATACAGCTGTCAG+GGG | 0.646445 | 3_1:-1055372 | Msa0343030:three_prime_UTR |
| AGATTCCATACAATAACACT+AGG | 0.646448 | 3_1:+1055727 | None:intergenic |
| TGCAAGGATAATTGAACCTG+TGG | 0.658279 | 3_1:+1058977 | None:intergenic |
| GTGGAGGTGGAGAAATTGGA+GGG | 0.666110 | 3_1:+1055977 | None:intergenic |
| GAGGTAGGCATCAATTGTGG+GGG | 0.668121 | 3_1:-1055477 | Msa0343030:three_prime_UTR |
| CCGAATCGTTCTCAGGCCTG+TGG | 0.668995 | 3_1:-1056425 | Msa0343030:CDS |
| TAGCAGATCGGAGAAACATG+CGG | 0.699281 | 3_1:-1059274 | Msa0343030:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAATAAT+TGG | - | chr3_1:1057143-1057162 | Msa0343030:intron | 0.0% |
| !!! | AAATTTTTCAATTAGAATAT+AGG | + | chr3_1:1055978-1055997 | None:intergenic | 10.0% |
| !! | ATTTATTAGTTAAAATTACT+TGG | - | chr3_1:1056418-1056437 | Msa0343030:CDS | 10.0% |
| !!! | AAAAAATGATAAATTTTTCA+TGG | - | chr3_1:1056967-1056986 | Msa0343030:CDS | 10.0% |
| !!! | AAAAATGATAAATTTTTCAT+GGG | - | chr3_1:1056968-1056987 | Msa0343030:CDS | 10.0% |
| !!! | GTTTTATTATAAAAAAAAAG+GGG | - | chr3_1:1057388-1057407 | Msa0343030:intron | 10.0% |
| !!! | TTTTATTATAAAAAAAAAGG+GGG | - | chr3_1:1057389-1057408 | Msa0343030:intron | 10.0% |
| !! | AATAAAATGATAATTGAAAA+AGG | + | chr3_1:1057474-1057493 | None:intergenic | 10.0% |
| !!! | TTTTTATAATGATAATGTGA+AGG | - | chr3_1:1056041-1056060 | Msa0343030:intron | 15.0% |
| !! | TGACTTATTAAAATTAATTC+TGG | + | chr3_1:1056699-1056718 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAACTGTCA+CGG | - | chr3_1:1059780-1059799 | Msa0343030:five_prime_UTR | 15.0% |
| !! | AAGATACAAACTTTGTTAAT+GGG | + | chr3_1:1055953-1055972 | None:intergenic | 20.0% |
| !! | AAAGATACAAACTTTGTTAA+TGG | + | chr3_1:1055954-1055973 | None:intergenic | 20.0% |
| !! | AAGATTGAATATTGAAATTG+AGG | - | chr3_1:1056375-1056394 | Msa0343030:CDS | 20.0% |
| !! | ACAATAGGTTTGATAAAATA+TGG | - | chr3_1:1056786-1056805 | Msa0343030:CDS | 20.0% |
| !!! | CAAGCAATATATTTTTATAG+TGG | + | chr3_1:1057421-1057440 | None:intergenic | 20.0% |
| !! | TAATGACATAACATAAACTT+TGG | - | chr3_1:1057999-1058018 | Msa0343030:intron | 20.0% |
| !!! | AAAAACATGTTTTAACTACT+TGG | - | chr3_1:1058400-1058419 | Msa0343030:intron | 20.0% |
| !! | TTAATAGTATGATACGATTA+TGG | - | chr3_1:1058521-1058540 | Msa0343030:intron | 20.0% |
| !!! | ATATGTTTGAGAATTTTAGA+TGG | - | chr3_1:1058565-1058584 | Msa0343030:intron | 20.0% |
| !!! | TACTAATGATTTGTTAATGA+TGG | - | chr3_1:1058867-1058886 | Msa0343030:intron | 20.0% |
| !!! | TGCTATTGTTTAATCATTTT+AGG | + | chr3_1:1059009-1059028 | None:intergenic | 20.0% |
| !!! | TACAATAAGGTAAAGTTTTA+TGG | + | chr3_1:1059061-1059080 | None:intergenic | 20.0% |
| !! | TAAATCGTTTCATCTTTATA+AGG | + | chr3_1:1059718-1059737 | None:intergenic | 20.0% |
| !! | TATAAAGATGAAACGATTTA+TGG | - | chr3_1:1059718-1059737 | Msa0343030:five_prime_UTR | 20.0% |
| ! | TCTTTCATAAGAAGTGATTA+AGG | + | chr3_1:1055328-1055347 | None:intergenic | 25.0% |
| ! | TAAACACAAAAGTAGAATGA+AGG | - | chr3_1:1055493-1055512 | Msa0343030:three_prime_UTR | 25.0% |
| !! | TTGTATGGATTAAAAACAAC+AGG | + | chr3_1:1055660-1055679 | None:intergenic | 25.0% |
| ! | TGACGATTAATACAAAGATT+TGG | + | chr3_1:1055702-1055721 | None:intergenic | 25.0% |
| ! | AATTATTATTACCTTCAAGC+TGG | + | chr3_1:1055746-1055765 | None:intergenic | 25.0% |
| ! | AGATACAAACTTTGTTAATG+GGG | + | chr3_1:1055952-1055971 | None:intergenic | 25.0% |
| ! | TATGAATGTGAATAGTCTAT+TGG | - | chr3_1:1056276-1056295 | Msa0343030:intron | 25.0% |
| ! | TAAATAAAAACTAGTTGAGC+TGG | + | chr3_1:1056403-1056422 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTCGTGTATGTT+TGG | - | chr3_1:1056513-1056532 | Msa0343030:CDS | 25.0% |
| ! | CGGGAATTATCAATAAAAAA+GGG | + | chr3_1:1056854-1056873 | None:intergenic | 25.0% |
| ! | ACGGGAATTATCAATAAAAA+AGG | + | chr3_1:1056855-1056874 | None:intergenic | 25.0% |
| !!! | TTTTTTATTGATAATTCCCG+TGG | - | chr3_1:1056854-1056873 | Msa0343030:CDS | 25.0% |
| ! | TATACATGTTCATTGTTCAA+TGG | - | chr3_1:1057315-1057334 | Msa0343030:intron | 25.0% |
| ! | ATACATGTTCATTGTTCAAT+GGG | - | chr3_1:1057316-1057335 | Msa0343030:intron | 25.0% |
| ! | CAGCATCTAATCTTAAAATA+TGG | + | chr3_1:1057507-1057526 | None:intergenic | 25.0% |
| !! | GCAATTTTATAAACCAAAGA+AGG | - | chr3_1:1057632-1057651 | Msa0343030:intron | 25.0% |
| ! | AATAATCACCATCTTTATTG+AGG | - | chr3_1:1058136-1058155 | Msa0343030:intron | 25.0% |
| ! | AACATAATCCTCAATAAAGA+TGG | + | chr3_1:1058147-1058166 | None:intergenic | 25.0% |
| !!! | GTAGTTAAAACATGTTTTTG+AGG | + | chr3_1:1058399-1058418 | None:intergenic | 25.0% |
| ! | GTACACAGTTAAATACAATA+AGG | + | chr3_1:1059074-1059093 | None:intergenic | 25.0% |
| ! | GTGTACTAATATATATGTTC+AGG | - | chr3_1:1059088-1059107 | Msa0343030:intron | 25.0% |
| ! | TTGTTTGCTTGACTATTATT+AGG | + | chr3_1:1059203-1059222 | None:intergenic | 25.0% |
| !! | ATAACCTGAAAAGACATTTT+TGG | + | chr3_1:1059588-1059607 | None:intergenic | 25.0% |
| ! | ACAGGAAAAAAGTTGAATTA+TGG | - | chr3_1:1059675-1059694 | Msa0343030:five_prime_UTR | 25.0% |
| !! | TTTATAAGGTATCTCATAAG+TGG | + | chr3_1:1059704-1059723 | None:intergenic | 25.0% |
| AAGAGGAAAAAAGCTGATTA+AGG | + | chr3_1:1055370-1055389 | None:intergenic | 30.0% | |
| !! | TCTACTTTTGTGTTTAGAGA+GGG | + | chr3_1:1055489-1055508 | None:intergenic | 30.0% |
| !! | TTCTACTTTTGTGTTTAGAG+AGG | + | chr3_1:1055490-1055509 | None:intergenic | 30.0% |
| ! | ATGATTAGTTGAAGATGCAT+AGG | + | chr3_1:1055534-1055553 | None:intergenic | 30.0% |
| ! | AATGATAATGTGAAGGTGAA+AGG | - | chr3_1:1056048-1056067 | Msa0343030:intron | 30.0% |
| ! | AACCATGAATACCGATTAAA+CGG | + | chr3_1:1056078-1056097 | None:intergenic | 30.0% |
| CTTATGTGACAACTAAGAAA+TGG | - | chr3_1:1056446-1056465 | Msa0343030:CDS | 30.0% | |
| ! | GCTACAAGTAGAATCAATTT+TGG | + | chr3_1:1056555-1056574 | None:intergenic | 30.0% |
| TTCTACTTGTAGCTATAGAT+TGG | - | chr3_1:1056562-1056581 | Msa0343030:intron | 30.0% | |
| ACAATGCATCATGTTAAAGA+AGG | + | chr3_1:1056881-1056900 | None:intergenic | 30.0% | |
| TCTTTAACATGATGCATTGT+AGG | - | chr3_1:1056881-1056900 | Msa0343030:CDS | 30.0% | |
| ! | ATGGGATGTCTTTTTCTTTT+AGG | - | chr3_1:1056986-1057005 | Msa0343030:CDS | 30.0% |
| ! | TGGGATGTCTTTTTCTTTTA+GGG | - | chr3_1:1056987-1057006 | Msa0343030:CDS | 30.0% |
| CTAGTAGTTGTTGAATTAGT+TGG | - | chr3_1:1057180-1057199 | Msa0343030:intron | 30.0% | |
| GTCACAATTACAACATGATA+CGG | - | chr3_1:1057577-1057596 | Msa0343030:intron | 30.0% | |
| TGTTGTGTATCTTAACAGAA+TGG | - | chr3_1:1057833-1057852 | Msa0343030:intron | 30.0% | |
| ! | ATGATTTTCAAAACGACGTA+TGG | - | chr3_1:1057882-1057901 | Msa0343030:intron | 30.0% |
| ! | AACATAAACTTTGGTGTGTT+TGG | - | chr3_1:1058008-1058027 | Msa0343030:intron | 30.0% |
| CATTGATAGACATAGACAAA+TGG | + | chr3_1:1058049-1058068 | None:intergenic | 30.0% | |
| TGTCTATGTCTATCAATGAT+CGG | - | chr3_1:1058051-1058070 | Msa0343030:intron | 30.0% | |
| AAGATGGTGATTATTTCAGA+TGG | + | chr3_1:1058131-1058150 | None:intergenic | 30.0% | |
| TGTGCAGTAAATAAGTGAAT+TGG | - | chr3_1:1058492-1058511 | Msa0343030:intron | 30.0% | |
| GTGCAGTAAATAAGTGAATT+GGG | - | chr3_1:1058493-1058512 | Msa0343030:intron | 30.0% | |
| ! | AGAATTTTAGATGGAGATGA+AGG | - | chr3_1:1058574-1058593 | Msa0343030:intron | 30.0% |
| TAATCAACAGCGATGAAATT+TGG | + | chr3_1:1058781-1058800 | None:intergenic | 30.0% | |
| CATCAAATCGTTAATCACAA+AGG | - | chr3_1:1058836-1058855 | Msa0343030:intron | 30.0% | |
| TGATGGTTATGATGTTATAG+AGG | - | chr3_1:1058884-1058903 | Msa0343030:intron | 30.0% | |
| !!! | GTTTAATCATTTTAGGATGC+AGG | + | chr3_1:1059002-1059021 | None:intergenic | 30.0% |
| ! | TGATTCCTAGTGTTATTGTA+TGG | - | chr3_1:1059384-1059403 | Msa0343030:intron | 30.0% |
| AGATTCCATACAATAACACT+AGG | + | chr3_1:1059392-1059411 | None:intergenic | 30.0% | |
| !!! | TTTATGGTTGTGTTTTGACT+TGG | - | chr3_1:1059437-1059456 | Msa0343030:intron | 30.0% |
| GTTGAATGATTCACAACTAT+TGG | - | chr3_1:1059463-1059482 | Msa0343030:intron | 30.0% | |
| !! | TACATAGCATAAGCTGTTTT+TGG | - | chr3_1:1059495-1059514 | Msa0343030:intron | 30.0% |
| AGTTCACTTAAGAAACTTGT+CGG | + | chr3_1:1059538-1059557 | None:intergenic | 30.0% | |
| GGAAAAAAGTTGAATTATGG+TGG | - | chr3_1:1059678-1059697 | Msa0343030:five_prime_UTR | 30.0% | |
| ATATGGATTTGTGAAGGAAG+AGG | + | chr3_1:1055387-1055406 | None:intergenic | 35.0% | |
| GAAAGGATATGGATTTGTGA+AGG | + | chr3_1:1055393-1055412 | None:intergenic | 35.0% | |
| AGATAGCAACAGAAAGGATA+TGG | + | chr3_1:1055404-1055423 | None:intergenic | 35.0% | |
| AGTTGAAGATAGCAACAGAA+AGG | + | chr3_1:1055410-1055429 | None:intergenic | 35.0% | |
| GCAGAAAACGAAACATTGTA+TGG | + | chr3_1:1055675-1055694 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTTAACCATGTACG+AGG | - | chr3_1:1055819-1055838 | Msa0343030:exon | 35.0% |
| ! | TGAAAGGTTTGCCGTTTAAT+CGG | - | chr3_1:1056064-1056083 | Msa0343030:intron | 35.0% |
| GACGCATAATTCATTTGCTT+TGG | - | chr3_1:1056101-1056120 | Msa0343030:intron | 35.0% | |
| CATAATTCATTTGCTTTGGC+TGG | - | chr3_1:1056105-1056124 | Msa0343030:intron | 35.0% | |
| GACAACTAAGAAATGGTCTA+TGG | - | chr3_1:1056453-1056472 | Msa0343030:CDS | 35.0% | |
| TTTGACCGTAGAAACTAGAA+AGG | + | chr3_1:1056761-1056780 | None:intergenic | 35.0% | |
| TACGGTCAAACAAACACAAT+AGG | - | chr3_1:1056771-1056790 | Msa0343030:CDS | 35.0% | |
| ATTAATCCTTCTCTTCCTTG+TGG | - | chr3_1:1056828-1056847 | Msa0343030:CDS | 35.0% | |
| ATCAATAAAAAAGGGCCACA+AGG | + | chr3_1:1056846-1056865 | None:intergenic | 35.0% | |
| ATCATGTTAAAGAAGGTCCA+CGG | + | chr3_1:1056874-1056893 | None:intergenic | 35.0% | |
| ! | GGGATGTCTTTTTCTTTTAG+GGG | - | chr3_1:1056988-1057007 | Msa0343030:CDS | 35.0% |
| TGTTGACCACATAAATGAAG+TGG | - | chr3_1:1057069-1057088 | Msa0343030:intron | 35.0% | |
| GTTGACCACATAAATGAAGT+GGG | - | chr3_1:1057070-1057089 | Msa0343030:intron | 35.0% | |
| TGGCACGGTTGAAATAAAAT+TGG | - | chr3_1:1057104-1057123 | Msa0343030:intron | 35.0% | |
| AAGTAAGATGTGTGCTTTCA+AGG | + | chr3_1:1057284-1057303 | None:intergenic | 35.0% | |
| ! | AGCACACATCTTACTTGTTA+AGG | - | chr3_1:1057288-1057307 | Msa0343030:intron | 35.0% |
| GGCAATCGTGTATTCTAATT+TGG | - | chr3_1:1057653-1057672 | Msa0343030:intron | 35.0% | |
| ! | CGATAAATCGTTGATTGTTC+AGG | + | chr3_1:1058286-1058305 | None:intergenic | 35.0% |
| ! | CTAGATTTTGTGTTCATTGG+TGG | + | chr3_1:1058637-1058656 | None:intergenic | 35.0% |
| CACCAATGAACACAAAATCT+AGG | - | chr3_1:1058635-1058654 | Msa0343030:intron | 35.0% | |
| ! | GACCTAGATTTTGTGTTCAT+TGG | + | chr3_1:1058640-1058659 | None:intergenic | 35.0% |
| GTCTTCATCATGCTAAGTAA+TGG | + | chr3_1:1058730-1058749 | None:intergenic | 35.0% | |
| ! | CATCGCTGTTGATTATTATC+AGG | - | chr3_1:1058786-1058805 | Msa0343030:intron | 35.0% |
| ATGATGTTATAGAGGAGTGA+TGG | - | chr3_1:1058892-1058911 | Msa0343030:intron | 35.0% | |
| AGCATATGCTGCATATTCAT+TGG | - | chr3_1:1059025-1059044 | Msa0343030:CDS | 35.0% | |
| GACTATTATTAGGAGACTTC+TGG | + | chr3_1:1059193-1059212 | None:intergenic | 35.0% | |
| CAAGCAAACAATGCATATAG+TGG | - | chr3_1:1059212-1059231 | Msa0343030:CDS | 35.0% | |
| ! | AACAGCTATGATGATGCAAT+TGG | - | chr3_1:1059238-1059257 | Msa0343030:CDS | 35.0% |
| TTTGGTTACCACAACTTTCT+TGG | - | chr3_1:1059271-1059290 | Msa0343030:CDS | 35.0% | |
| !!! | TGAGTCCTTTTTTCATCACT+CGG | - | chr3_1:1059411-1059430 | Msa0343030:CDS | 35.0% |
| !!! | CTGAAAAGACATTTTTGGCA+TGG | + | chr3_1:1059583-1059602 | None:intergenic | 35.0% |
| ! | CATGCCAAAAATGTCTTTTC+AGG | - | chr3_1:1059581-1059600 | Msa0343030:intron | 35.0% |
| AACTGAGATCTAGTGAAGAT+TGG | - | chr3_1:1059610-1059629 | Msa0343030:intron | 35.0% | |
| ! | TAGTGAAGATTGGTTAGATG+AGG | - | chr3_1:1059620-1059639 | Msa0343030:intron | 35.0% |
| CACATATTCATCCAGCTTGA+AGG | - | chr3_1:1055732-1055751 | Msa0343030:three_prime_UTR | 40.0% | |
| TGTCAAACATGTCCTGCAAA+TGG | - | chr3_1:1055887-1055906 | Msa0343030:CDS | 40.0% | |
| GATAGTATCCTGCTACATCT+GGG | + | chr3_1:1055923-1055942 | None:intergenic | 40.0% | |
| AGATAGTATCCTGCTACATC+TGG | + | chr3_1:1055924-1055943 | None:intergenic | 40.0% | |
| ! | TGCCGTTTAATCGGTATTCA+TGG | - | chr3_1:1056073-1056092 | Msa0343030:intron | 40.0% |
| TGCAAGGATAATTGAACCTG+TGG | + | chr3_1:1056142-1056161 | None:intergenic | 40.0% | |
| ATAGTGTCATCCTGGTTCAT+AGG | + | chr3_1:1056165-1056184 | None:intergenic | 40.0% | |
| CTAGAAAGGTCGTGTATGTT+TGG | + | chr3_1:1056747-1056766 | None:intergenic | 40.0% | |
| !! | CACGACCTTTCTAGTTTCTA+CGG | - | chr3_1:1056753-1056772 | Msa0343030:intron | 40.0% |
| TATGGAAGTCCATGCATACA+CGG | - | chr3_1:1056804-1056823 | Msa0343030:CDS | 40.0% | |
| TCATGTTAAAGAAGGTCCAC+GGG | + | chr3_1:1056873-1056892 | None:intergenic | 40.0% | |
| CTACACCCACTTCATTTATG+TGG | + | chr3_1:1057078-1057097 | None:intergenic | 40.0% | |
| GAATACACGATTGCCTTCTT+TGG | + | chr3_1:1057648-1057667 | None:intergenic | 40.0% | |
| TCTTAACAGAATGGTGTTCG+AGG | - | chr3_1:1057842-1057861 | Msa0343030:intron | 40.0% | |
| ! | GTATGGTTGTGTCATTCTAC+TGG | - | chr3_1:1057899-1057918 | Msa0343030:intron | 40.0% |
| TAGAGACATGCGTTCATTTC+TGG | - | chr3_1:1058097-1058116 | Msa0343030:intron | 40.0% | |
| AGCTTGGAAGACCTTAGTTA+GGG | + | chr3_1:1058183-1058202 | None:intergenic | 40.0% | |
| AAGCTTGGAAGACCTTAGTT+AGG | + | chr3_1:1058184-1058203 | None:intergenic | 40.0% | |
| GATTAACAGGTACATGTTCC+CGG | - | chr3_1:1058208-1058227 | Msa0343030:intron | 40.0% | |
| ACGACGTATTTCCATGTGAA+AGG | + | chr3_1:1058350-1058369 | None:intergenic | 40.0% | |
| AGGCATGCAATTACTCACAT+TGG | + | chr3_1:1058379-1058398 | None:intergenic | 40.0% | |
| !! | TTTCGATTTGGACAAGAACC+CGG | + | chr3_1:1058607-1058626 | None:intergenic | 40.0% |
| ATGTTATAGAGGAGTGATGG+TGG | - | chr3_1:1058895-1058914 | Msa0343030:intron | 40.0% | |
| TGACAGCATTGCTTATTGCA+AGG | - | chr3_1:1058969-1058988 | Msa0343030:CDS | 40.0% | |
| GCAATTGGCTGTGTTAACTT+TGG | - | chr3_1:1059253-1059272 | Msa0343030:CDS | 40.0% | |
| TTACCACAACTTTCTTGGCA+TGG | - | chr3_1:1059276-1059295 | Msa0343030:intron | 40.0% | |
| TAACCATGCCAAGAAAGTTG+TGG | + | chr3_1:1059282-1059301 | None:intergenic | 40.0% | |
| !! | AAGTGCCGAGTGATGAAAAA+AGG | + | chr3_1:1059419-1059438 | None:intergenic | 40.0% |
| TTTCATCACTCGGCACTTTA+TGG | - | chr3_1:1059421-1059440 | Msa0343030:CDS | 40.0% | |
| GTGAACTACCAAATTTGAGC+TGG | - | chr3_1:1059551-1059570 | Msa0343030:intron | 40.0% | |
| ! | GAAGATTGGTTAGATGAGGT+AGG | - | chr3_1:1059624-1059643 | Msa0343030:exon | 40.0% |
| ATGAGGTAGGCATCAATTGT+GGG | - | chr3_1:1059637-1059656 | Msa0343030:five_prime_UTR | 40.0% | |
| ACTCTCTTTATACAGCTGTC+AGG | - | chr3_1:1059742-1059761 | Msa0343030:five_prime_UTR | 40.0% | |
| CTCTCTTTATACAGCTGTCA+GGG | - | chr3_1:1059743-1059762 | Msa0343030:five_prime_UTR | 40.0% | |
| TCTCTTTATACAGCTGTCAG+GGG | - | chr3_1:1059744-1059763 | Msa0343030:five_prime_UTR | 40.0% | |
| TAGCAGATCGGAGAAACATG+CGG | - | chr3_1:1055842-1055861 | Msa0343030:CDS | 45.0% | |
| GGACGTGTATTTCCATTTGC+AGG | + | chr3_1:1055902-1055921 | None:intergenic | 45.0% | |
| TATCCTTGCACCTATGAACC+AGG | - | chr3_1:1056152-1056171 | Msa0343030:CDS | 45.0% | |
| GATCAGCAATAGTGTCATCC+TGG | + | chr3_1:1056173-1056192 | None:intergenic | 45.0% | |
| ATGGAAGTCCATGCATACAC+GGG | - | chr3_1:1056805-1056824 | Msa0343030:CDS | 45.0% | |
| GGATTAATCCCGTGTATGCA+TGG | + | chr3_1:1056816-1056835 | None:intergenic | 45.0% | |
| TGAAGTGGGTGTAGTGTAGA+TGG | - | chr3_1:1057084-1057103 | Msa0343030:intron | 45.0% | |
| ! | TGGTTGTGTCATTCTACTGG+AGG | - | chr3_1:1057902-1057921 | Msa0343030:intron | 45.0% |
| TCAGTTCATTCGTAAGTGCG+TGG | - | chr3_1:1057939-1057958 | Msa0343030:intron | 45.0% | |
| ACTAAGGTCTTCCAAGCTTC+AGG | - | chr3_1:1058185-1058204 | Msa0343030:intron | 45.0% | |
| CTAAGGTCTTCCAAGCTTCA+GGG | - | chr3_1:1058186-1058205 | Msa0343030:intron | 45.0% | |
| TCCAAGCTTCAGGGATTAAC+AGG | - | chr3_1:1058195-1058214 | Msa0343030:intron | 45.0% | |
| ACCTGTTAATCCCTGAAGCT+TGG | + | chr3_1:1058199-1058218 | None:intergenic | 45.0% | |
| AGGATCATGTCATCGACAAC+AGG | + | chr3_1:1058266-1058285 | None:intergenic | 45.0% | |
| ATTCTCCTCGAGATCATCCA+AGG | - | chr3_1:1058307-1058326 | Msa0343030:intron | 45.0% | |
| !! | CTGAAGGCATTCCTTTCACA+TGG | - | chr3_1:1058336-1058355 | Msa0343030:intron | 45.0% |
| ! | TGGAGATGAAGGTATGCAAC+CGG | - | chr3_1:1058585-1058604 | Msa0343030:intron | 45.0% |
| GGTGGCGATTCATTTCGATT+TGG | + | chr3_1:1058619-1058638 | None:intergenic | 45.0% | |
| TTCTACACCGAATCGTTCTC+AGG | - | chr3_1:1058684-1058703 | Msa0343030:intron | 45.0% | |
| CAGCGATGAAATTTGGCCAT+CGG | + | chr3_1:1058774-1058793 | None:intergenic | 45.0% | |
| !! | TTATAGAGGAGTGATGGTGG+AGG | - | chr3_1:1058898-1058917 | Msa0343030:intron | 45.0% |
| TTTGCTGCATCAACAGCTTG+TGG | + | chr3_1:1058928-1058947 | None:intergenic | 45.0% | |
| CAAGCTGTTGATGCAGCAAA+TGG | - | chr3_1:1058928-1058947 | Msa0343030:intron | 45.0% | |
| GCAAATGGTCATCTCACTTG+TGG | - | chr3_1:1058943-1058962 | Msa0343030:CDS | 45.0% | |
| GTTCAGGCAAATGCTACGTT+TGG | - | chr3_1:1059104-1059123 | Msa0343030:intron | 45.0% | |
| !! | GGAGACTTCTGGTTTCCATT+TGG | + | chr3_1:1059182-1059201 | None:intergenic | 45.0% |
| GATGAGGTAGGCATCAATTG+TGG | - | chr3_1:1059636-1059655 | Msa0343030:five_prime_UTR | 45.0% | |
| TGAGGTAGGCATCAATTGTG+GGG | - | chr3_1:1059638-1059657 | Msa0343030:five_prime_UTR | 45.0% | |
| ! | GGGGGCTTTATATTTCTCAC+AGG | - | chr3_1:1059657-1059676 | Msa0343030:five_prime_UTR | 45.0% |
| !! | AATAATAAAAAATATGAAAA+GGG | + | chr3_1:1056218-1056237 | None:intergenic | 5.0% |
| !! | TAATAATAAAAAATATGAAA+AGG | + | chr3_1:1056219-1056238 | None:intergenic | 5.0% |
| !!! | CATATTTTTTATTATTATTA+TGG | - | chr3_1:1056222-1056241 | Msa0343030:intron | 5.0% |
| !!! | ATGTTTTATTATAAAAAAAA+AGG | - | chr3_1:1057386-1057405 | Msa0343030:intron | 5.0% |
| !!! | TGTTTTATTATAAAAAAAAA+GGG | - | chr3_1:1057387-1057406 | Msa0343030:intron | 5.0% |
| CCATGTACGAGGTAGCAGAT+CGG | - | chr3_1:1055830-1055849 | Msa0343030:exon | 50.0% | |
| ACATGCGGTTCATGTGATGC+TGG | - | chr3_1:1055857-1055876 | Msa0343030:CDS | 50.0% | |
| ATACACGTCCCAGATGTAGC+AGG | - | chr3_1:1055912-1055931 | Msa0343030:CDS | 50.0% | |
| CATCCTGGTTCATAGGTGCA+AGG | + | chr3_1:1056158-1056177 | None:intergenic | 50.0% | |
| AAAGGGCCACAAGGAAGAGA+AGG | + | chr3_1:1056837-1056856 | None:intergenic | 50.0% | |
| TGGGTGTAGTGTAGATGGCA+CGG | - | chr3_1:1057089-1057108 | Msa0343030:intron | 50.0% | |
| TCTCTAAGCGCGTTTACTGC+AGG | + | chr3_1:1058083-1058102 | None:intergenic | 50.0% | |
| AAGACCTTAGTTAGGGCTGC+AGG | + | chr3_1:1058176-1058195 | None:intergenic | 50.0% | |
| AACAGGTACATGTTCCCGGT+TGG | - | chr3_1:1058212-1058231 | Msa0343030:intron | 50.0% | |
| TGCTTCCTTGGATGATCTCG+AGG | + | chr3_1:1058315-1058334 | None:intergenic | 50.0% | |
| TCATCCAAGGAAGCAGCTGA+AGG | - | chr3_1:1058320-1058339 | Msa0343030:intron | 50.0% | |
| AATGCCTTCAGCTGCTTCCT+TGG | + | chr3_1:1058327-1058346 | None:intergenic | 50.0% | |
| ! | GGAGATGAAGGTATGCAACC+GGG | - | chr3_1:1058586-1058605 | Msa0343030:intron | 50.0% |
| AAGACTTGCCATGAAGCTGC+CGG | - | chr3_1:1058745-1058764 | Msa0343030:intron | 50.0% | |
| ! | GAAATTTGGCCATCGGTTGC+CGG | + | chr3_1:1058767-1058786 | None:intergenic | 50.0% |
| GTGGAGGTGGAGAAATTGGA+GGG | + | chr3_1:1059142-1059161 | None:intergenic | 50.0% | |
| !! | TTTGGTGCAGCTTCTGAAGC+AGG | + | chr3_1:1059164-1059183 | None:intergenic | 50.0% |
| GCTTCAGAAGCTGCACCAAA+TGG | - | chr3_1:1059164-1059183 | Msa0343030:intron | 50.0% | |
| ! | GGCTTGCTCCAGCTCAAATT+TGG | + | chr3_1:1059562-1059581 | None:intergenic | 50.0% |
| GAGGTAGGCATCAATTGTGG+GGG | - | chr3_1:1059639-1059658 | Msa0343030:five_prime_UTR | 50.0% | |
| CCGATCTGCTACCTCGTACA+TGG | + | chr3_1:1055833-1055852 | None:intergenic | 55.0% | |
| AGCTCCTGCAGCCCTAACTA+AGG | - | chr3_1:1058169-1058188 | Msa0343030:intron | 55.0% | |
| GGTACATGTTCCCGGTTGGT+CGG | - | chr3_1:1058216-1058235 | Msa0343030:intron | 55.0% | |
| TTCTTGGGCAACCGACCAAC+CGG | + | chr3_1:1058230-1058249 | None:intergenic | 55.0% | |
| GTTGGTCGGTTGCCCAAGAA+CGG | - | chr3_1:1058230-1058249 | Msa0343030:intron | 55.0% | |
| TGCCCAAGAACGGTAGCGAT+TGG | - | chr3_1:1058240-1058259 | Msa0343030:intron | 55.0% | |
| GGCCAATCGCTACCGTTCTT+GGG | + | chr3_1:1058245-1058264 | None:intergenic | 55.0% | |
| AGGCCAATCGCTACCGTTCT+TGG | + | chr3_1:1058246-1058265 | None:intergenic | 55.0% | |
| CCACAGGCCTGAGAACGATT+CGG | + | chr3_1:1058694-1058713 | None:intergenic | 55.0% | |
| TGGAGCTGAATTGTCGCCAC+AGG | + | chr3_1:1058710-1058729 | None:intergenic | 55.0% | |
| GGTGGAGGTGGAGAAATTGG+AGG | + | chr3_1:1059143-1059162 | None:intergenic | 55.0% | |
| GCAGGTGGAGGTGGAGAAAT+TGG | + | chr3_1:1059146-1059165 | None:intergenic | 55.0% | |
| GCTGGTGCAAGATCAGCCAC+AGG | - | chr3_1:1056123-1056142 | Msa0343030:intron | 60.0% | |
| TCTTGGGCAACCGACCAACC+GGG | + | chr3_1:1058229-1058248 | None:intergenic | 60.0% | |
| CCGAATCGTTCTCAGGCCTG+TGG | - | chr3_1:1058691-1058710 | Msa0343030:intron | 60.0% | |
| ATCGGTTGCCGGCAGCTTCA+TGG | + | chr3_1:1058756-1058775 | None:intergenic | 60.0% | |
| ATGAAGCTGCCGGCAACCGA+TGG | - | chr3_1:1058755-1058774 | Msa0343030:intron | 60.0% | |
| !! | GCTTCTGAAGCAGGTGGAGG+TGG | + | chr3_1:1059155-1059174 | None:intergenic | 60.0% |
| !! | GCAGCTTCTGAAGCAGGTGG+AGG | + | chr3_1:1059158-1059177 | None:intergenic | 60.0% |
| !! | GGTGCAGCTTCTGAAGCAGG+TGG | + | chr3_1:1059161-1059180 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1055313 | 1059825 | 1055313 | ID=Msa0343030;Name=Msa0343030 |
| chr3_1 | mRNA | 1055313 | 1059825 | 1055313 | ID=Msa0343030-mRNA-1;Parent=Msa0343030;Name=Msa0343030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=196|1|1|1|0.62|0.88|9|521|407 |
| chr3_1 | exon | 1055313 | 1056028 | 1055313 | ID=Msa0343030-mRNA-1:exon:303;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1056148 | 1056234 | 1056148 | ID=Msa0343030-mRNA-1:exon:302;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1056331 | 1056554 | 1056331 | ID=Msa0343030-mRNA-1:exon:301;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1056758 | 1057061 | 1056758 | ID=Msa0343030-mRNA-1:exon:300;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1057189 | 1057287 | 1057189 | ID=Msa0343030-mRNA-1:exon:299;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1058938 | 1059075 | 1058938 | ID=Msa0343030-mRNA-1:exon:298;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1059177 | 1059290 | 1059177 | ID=Msa0343030-mRNA-1:exon:297;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1059385 | 1059441 | 1059385 | ID=Msa0343030-mRNA-1:exon:296;Parent=Msa0343030-mRNA-1 |
| chr3_1 | exon | 1059624 | 1059825 | 1059624 | ID=Msa0343030-mRNA-1:exon:295;Parent=Msa0343030-mRNA-1 |
| chr3_1 | five_prime_UTR | 1059630 | 1059825 | 1059630 | ID=Msa0343030-mRNA-1:five_prime_utr;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1059624 | 1059629 | 1059624 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1059385 | 1059441 | 1059385 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1059177 | 1059290 | 1059177 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1058938 | 1059075 | 1058938 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1057189 | 1057287 | 1057189 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1056758 | 1057061 | 1056758 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1056331 | 1056554 | 1056331 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1056148 | 1056234 | 1056148 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | CDS | 1055834 | 1056028 | 1055834 | ID=Msa0343030-mRNA-1:cds;Parent=Msa0343030-mRNA-1 |
| chr3_1 | three_prime_UTR | 1055313 | 1055833 | 1055313 | ID=Msa0343030-mRNA-1:three_prime_utr;Parent=Msa0343030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
