Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756800 | sp|Q93XX5|Y5713_ARATH | 43.963 | 323 | 134 | 1 | 98 | 373 | 46 | 368 | 5.36e-97 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756800 | G7K6M0 | 85.749 | 407 | 11 | 1 | 70 | 429 | 1 | 407 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0713110 | Msa0756800 | 0.889107 | 3.255074e-73 | -8.615850e-47 |
| Msa0714340 | Msa0756800 | -0.817726 | 2.839205e-52 | -8.615850e-47 |
| Msa0714380 | Msa0756800 | -0.834674 | 2.615261e-56 | -8.615850e-47 |
| Msa0756800 | Msa0807050 | -0.814584 | 1.430188e-51 | -8.615850e-47 |
| Msa0756800 | Msa0832990 | -0.816438 | 5.530192e-52 | -8.615850e-47 |
| Msa0756800 | Msa0836310 | 0.888810 | 4.242210e-73 | -8.615850e-47 |
| Msa0756800 | Msa0861800 | -0.814684 | 1.359359e-51 | -8.615850e-47 |
| Msa0756800 | Msa1132950 | -0.811395 | 7.152852e-51 | -8.615850e-47 |
| Msa0756800 | Msa1198450 | -0.820600 | 6.294726e-53 | -8.615850e-47 |
| Msa0756800 | Msa1252070 | -0.805838 | 1.100377e-49 | -8.615850e-47 |
| Msa0756800 | Msa1292730 | -0.830433 | 2.944974e-55 | -8.615850e-47 |
| Msa0756800 | Msa1396090 | -0.847914 | 8.551505e-60 | -8.615850e-47 |
| Msa0756800 | Msa1415560 | -0.805230 | 1.475770e-49 | -8.615850e-47 |
| Msa0756800 | Msa1428560 | -0.869338 | 3.337965e-66 | -8.615850e-47 |
| Msa0200840 | Msa0756800 | -0.859712 | 3.420855e-63 | -8.615850e-47 |
| Msa0200870 | Msa0756800 | -0.864453 | 1.202859e-64 | -8.615850e-47 |
| Msa0411000 | Msa0756800 | -0.824372 | 8.366068e-54 | -8.615850e-47 |
| Msa0455230 | Msa0756800 | -0.827319 | 1.670490e-54 | -8.615850e-47 |
| Msa0462380 | Msa0756800 | -0.824471 | 7.929609e-54 | -8.615850e-47 |
| Msa0462420 | Msa0756800 | -0.827373 | 1.622024e-54 | -8.615850e-47 |
| Msa0462470 | Msa0756800 | -0.815137 | 1.078480e-51 | -8.615850e-47 |
| Msa0243470 | Msa0756800 | -0.872715 | 2.569467e-67 | -8.615850e-47 |
| Msa0243820 | Msa0756800 | -0.869797 | 2.364557e-66 | -8.615850e-47 |
| Msa0281940 | Msa0756800 | -0.852936 | 3.327985e-61 | -8.615850e-47 |
| Msa0282500 | Msa0756800 | -0.853678 | 2.039394e-61 | -8.615850e-47 |
| Msa0343030 | Msa0756800 | 0.950714 | 9.303486e-109 | -8.615850e-47 |
| Msa0363460 | Msa0756800 | -0.824599 | 7.398502e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756800 | MtrunA17_Chr5g0402081 | 85.749 | 407 | 11 | 1 | 70 | 429 | 1 | 407 | 0.0 | 709 |
| Msa0756800 | MtrunA17_Chr4g0044651 | 56.198 | 363 | 105 | 4 | 74 | 382 | 8 | 370 | 4.95e-146 | 421 |
| Msa0756800 | MtrunA17_Chr4g0053041 | 43.236 | 377 | 154 | 5 | 64 | 380 | 7 | 383 | 2.68e-103 | 313 |
| Msa0756800 | MtrunA17_Chr5g0401931 | 41.645 | 389 | 164 | 4 | 90 | 415 | 27 | 415 | 2.21e-101 | 308 |
| Msa0756800 | MtrunA17_Chr7g0219811 | 41.096 | 365 | 156 | 5 | 70 | 376 | 1 | 364 | 3.50e-95 | 290 |
| Msa0756800 | MtrunA17_Chr4g0044681 | 43.218 | 317 | 122 | 4 | 89 | 354 | 23 | 332 | 1.39e-89 | 275 |
| Msa0756800 | MtrunA17_Chr5g0419671 | 35.685 | 241 | 88 | 3 | 193 | 386 | 13 | 233 | 1.65e-43 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756800 | AT4G36945.1 | 50.743 | 404 | 145 | 5 | 75 | 428 | 9 | 408 | 1.50e-138 | 403 |
| Msa0756800 | AT1G49740.1 | 54.167 | 336 | 104 | 2 | 86 | 371 | 24 | 359 | 9.35e-126 | 369 |
| Msa0756800 | AT3G19310.1 | 46.970 | 396 | 149 | 5 | 86 | 429 | 24 | 410 | 9.61e-124 | 365 |
| Msa0756800 | AT5G67130.1 | 43.963 | 323 | 134 | 1 | 98 | 373 | 46 | 368 | 5.45e-98 | 300 |
| Msa0756800 | AT1G13680.1 | 37.500 | 336 | 149 | 5 | 80 | 364 | 21 | 346 | 7.47e-76 | 240 |
Find 122 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGGTCCTTTCAAGTTTA+AGG | 0.086169 | 5_2:+11355752 | Msa0756800:CDS |
| TAGAGACATGCGTTCATTTC+TGG | 0.130652 | 5_2:+11358795 | Msa0756800:CDS |
| TATAAAGATGAAACGATTTA+TGG | 0.146226 | 5_2:+11360415 | Msa0756800:three_prime_UTR |
| TTTCATCACTCGGCACTTTA+TGG | 0.185673 | 5_2:+11360119 | Msa0756800:three_prime_UTR |
| GCAGGTGGAGGTGGAGAAAT+TGG | 0.207822 | 5_2:-11359841 | None:intergenic |
| TAATCAACAGCGATGAAATT+TGG | 0.242073 | 5_2:-11359476 | None:intergenic |
| AAAGATACAAACTTTGTTAA+TGG | 0.244124 | 5_2:-11356634 | None:intergenic |
| TTGTTTGCTTGACTATTATT+AGG | 0.258950 | 5_2:-11359898 | None:intergenic |
| TTTGGTTACCACAACTTTCT+TGG | 0.259872 | 5_2:+11359969 | Msa0756800:CDS |
| AGGCCAATCGCTACCGTTCT+TGG | 0.277242 | 5_2:-11358941 | None:intergenic |
| GGCTTGCTCCAGCTCAAATT+TGG | 0.281003 | 5_2:-11360257 | None:intergenic |
| TAAATCGTTTCATCTTTATA+AGG | 0.301830 | 5_2:-11360412 | None:intergenic |
| AAGATACAAACTTTGTTAAT+GGG | 0.302320 | 5_2:-11356633 | None:intergenic |
| CATCGCTGTTGATTATTATC+AGG | 0.302636 | 5_2:+11359484 | Msa0756800:CDS |
| ACTAAGGTCTTCCAAGCTTC+AGG | 0.304715 | 5_2:+11358883 | Msa0756800:CDS |
| TCCAAGCTTCAGGGATTAAC+AGG | 0.322189 | 5_2:+11358893 | Msa0756800:CDS |
| GACTATTATTAGGAGACTTC+TGG | 0.327242 | 5_2:-11359888 | None:intergenic |
| GTTGAATGATTCACAACTAT+TGG | 0.354858 | 5_2:+11360161 | Msa0756800:three_prime_UTR |
| TTCTTGGGCAACCGACCAAC+CGG | 0.355141 | 5_2:-11358925 | None:intergenic |
| AAGCTTGGAAGACCTTAGTT+AGG | 0.355874 | 5_2:-11358879 | None:intergenic |
| TGACGATTAATACAAAGATT+TGG | 0.359042 | 5_2:-11356379 | None:intergenic |
| GGACGTGTATTTCCATTTGC+AGG | 0.360507 | 5_2:-11356582 | None:intergenic |
| GACGCATAATTCATTTGCTT+TGG | 0.361385 | 5_2:+11356784 | Msa0756800:CDS |
| AGATAGCAACAGAAAGGATA+TGG | 0.370036 | 5_2:-11356081 | None:intergenic |
| TGAAAGGTTTACCGTTTAAT+CGG | 0.378011 | 5_2:+11356747 | Msa0756800:CDS |
| AGATAGTATCCTGCTACATC+TGG | 0.382095 | 5_2:-11356604 | None:intergenic |
| CATAATTCATTTGCTTTGGC+TGG | 0.382844 | 5_2:+11356788 | Msa0756800:CDS |
| ATCGGTTGCCGGCAGCTTCA+TGG | 0.383161 | 5_2:-11359451 | None:intergenic |
| GGAGACTTCTGGTTTCCATT+TGG | 0.388451 | 5_2:-11359877 | None:intergenic |
| CACATATTCATCCAGCTTGA+AGG | 0.392390 | 5_2:+11356412 | Msa0756800:CDS |
| GAAATTTGGCCATCGGTTGC+CGG | 0.398958 | 5_2:-11359462 | None:intergenic |
| TGATTCCTAGTGTTATTGTA+TGG | 0.400563 | 5_2:+11360082 | Msa0756800:three_prime_UTR |
| GTTCAGGCAAATGCTACGTT+TGG | 0.417266 | 5_2:+11359802 | Msa0756800:intron |
| TTTGGTGCAGCTTCTGAAGC+AGG | 0.424534 | 5_2:-11359859 | None:intergenic |
| AACCATGAGTACCGATTAAA+CGG | 0.428188 | 5_2:-11356758 | None:intergenic |
| GGTGGCGATTCATTTCGATT+TGG | 0.434330 | 5_2:-11359314 | None:intergenic |
| GATTAACAGGTACATGTTCC+CGG | 0.438116 | 5_2:+11358906 | Msa0756800:CDS |
| TTGAGTCCTACTAATGCCTT+CGG | 0.441340 | 5_2:-11355729 | None:intergenic |
| TGGAGATGAAGGTATGCAAC+CGG | 0.442403 | 5_2:+11359283 | Msa0756800:intron |
| TTCTACACCGAATCGTTCTC+AGG | 0.443945 | 5_2:+11359382 | Msa0756800:CDS |
| AATAATCACCATCTTTATTG+AGG | 0.452937 | 5_2:+11358834 | Msa0756800:CDS |
| GCTTCAGAAGCTGCACCAAA+TGG | 0.457578 | 5_2:+11359862 | Msa0756800:CDS |
| CTAAGGTCTTCCAAGCTTCA+GGG | 0.460500 | 5_2:+11358884 | Msa0756800:CDS |
| TGTCAAACATGTCCTGCAAA+TGG | 0.461549 | 5_2:+11356570 | Msa0756800:CDS |
| GGCCAATCGCTACCGTTCTT+GGG | 0.461898 | 5_2:-11358940 | None:intergenic |
| GCTTCTGAAGCAGGTGGAGG+TGG | 0.462827 | 5_2:-11359850 | None:intergenic |
| AATTATTATTACCTTCAAGC+TGG | 0.464784 | 5_2:-11356423 | None:intergenic |
| ACTCTCTTTATACAGCTGTC+AGG | 0.475142 | 5_2:+11360439 | Msa0756800:three_prime_UTR |
| AATGATAATGTGAAGGTGAA+AGG | 0.477711 | 5_2:+11356731 | Msa0756800:intron |
| CTACTTCCGAAGGCATTAGT+AGG | 0.478832 | 5_2:+11355723 | Msa0756800:CDS |
| GTATGGTTGTGTCATTCTAC+TGG | 0.479005 | 5_2:+11358609 | Msa0756800:CDS |
| CAAGCAAACAATGCATATAG+TGG | 0.479069 | 5_2:+11359910 | Msa0756800:CDS |
| CTCTCTTTATACAGCTGTCA+GGG | 0.493580 | 5_2:+11360440 | Msa0756800:three_prime_UTR |
| ATAGTGTCATCCTGGTTCAT+AGG | 0.494246 | 5_2:-11356845 | None:intergenic |
| ACCTGTTAATCCCTGAAGCT+TGG | 0.494888 | 5_2:-11358894 | None:intergenic |
| AACATAATCCTCAATAAAGA+TGG | 0.496490 | 5_2:-11358842 | None:intergenic |
| AAGATGGTGATTATTTCAGA+TGG | 0.501112 | 5_2:-11358826 | None:intergenic |
| GTGAACTACCAAATTTGAGC+TGG | 0.503350 | 5_2:+11360249 | Msa0756800:three_prime_UTR |
| AACTGAGATCTAGTGAAGAT+TGG | 0.507225 | 5_2:+11360308 | Msa0756800:three_prime_UTR |
| AAGACCTTAGTTAGGGCTGC+AGG | 0.507313 | 5_2:-11358871 | None:intergenic |
| GCAATTGGTTGTGTTAACTT+TGG | 0.507562 | 5_2:+11359951 | Msa0756800:CDS |
| ATGAGGTAGGCATCAATTGT+GGG | 0.507567 | 5_2:+11360335 | Msa0756800:three_prime_UTR |
| CAAGCTGTTGATGCAGCAAA+TGG | 0.512280 | 5_2:+11359626 | Msa0756800:CDS |
| AGCTCCTGCAGCCCTAACTA+AGG | 0.514774 | 5_2:+11358867 | Msa0756800:CDS |
| TACCGTTTAATCGGTACTCA+TGG | 0.514816 | 5_2:+11356756 | Msa0756800:CDS |
| GATGAGGTAGGCATCAATTG+TGG | 0.517383 | 5_2:+11360334 | Msa0756800:three_prime_UTR |
| AGCTTGGAAGACCTTAGTTA+GGG | 0.519986 | 5_2:-11358878 | None:intergenic |
| ATGAAGCTGCCGGCAACCGA+TGG | 0.525241 | 5_2:+11359453 | Msa0756800:CDS |
| CACCAATGAACACAAAATCT+AGG | 0.527509 | 5_2:+11359333 | Msa0756800:CDS |
| TTTATAAGGTATCTCATAAG+TGG | 0.529772 | 5_2:-11360398 | None:intergenic |
| GTCTTCATCATGCTAAGTAA+TGG | 0.532104 | 5_2:-11359425 | None:intergenic |
| TTACCACAACTTTCTTGGCA+TGG | 0.532874 | 5_2:+11359974 | Msa0756800:CDS |
| TAAACACAAAAGTAGAATGA+AGG | 0.537079 | 5_2:+11356173 | Msa0756800:CDS |
| AACAGCTATGATGATGCAAT+TGG | 0.537624 | 5_2:+11359936 | Msa0756800:CDS |
| AGATACAAACTTTGTTAATG+GGG | 0.540888 | 5_2:-11356632 | None:intergenic |
| TCTCTAAGCGCGTTTACTGC+AGG | 0.540953 | 5_2:-11358778 | None:intergenic |
| TTTCGATTTGGACAAGAACC+CGG | 0.547317 | 5_2:-11359302 | None:intergenic |
| CAGCGATGAAATTTGGCCAT+CGG | 0.549318 | 5_2:-11359469 | None:intergenic |
| TGGGGCTTCATATTTCTCAC+AGG | 0.551295 | 5_2:+11360354 | Msa0756800:three_prime_UTR |
| GTTGGTCGGTTGCCCAAGAA+CGG | 0.555167 | 5_2:+11358928 | Msa0756800:CDS |
| CCACAGGCCTGAGAACGATT+CGG | 0.555778 | 5_2:-11359389 | None:intergenic |
| ATATGGATTTGTGAAGGAAG+AGG | 0.558800 | 5_2:-11356064 | None:intergenic |
| GCAGCTTCTGAAGCAGGTGG+AGG | 0.559293 | 5_2:-11359853 | None:intergenic |
| TTATAGAGGAGTGATGGTGG+AGG | 0.564560 | 5_2:+11359596 | Msa0756800:intron |
| GATCAGCAATAGTGTCATCC+TGG | 0.565278 | 5_2:-11356853 | None:intergenic |
| GATAGTATCCTGCTACATCT+GGG | 0.566644 | 5_2:-11356603 | None:intergenic |
| ATACACGTCCCAGATGTAGC+AGG | 0.568124 | 5_2:+11356595 | Msa0756800:CDS |
| AAGACTTGCCATGAAGCTGC+CGG | 0.572214 | 5_2:+11359443 | Msa0756800:CDS |
| AGTTCACTTAAGAAACTTGT+CGG | 0.573594 | 5_2:-11360233 | None:intergenic |
| AGTTGAAGATAGCAACAGAA+AGG | 0.574228 | 5_2:-11356087 | None:intergenic |
| TGGAGCTGAATTGTCGCCAC+AGG | 0.577474 | 5_2:-11359405 | None:intergenic |
| TGACAGCATTGCTTATTGCA+AGG | 0.578759 | 5_2:+11359667 | Msa0756800:CDS |
| TCTTAACAGAATGGTGTTCG+AGG | 0.581911 | 5_2:+11358552 | Msa0756800:intron |
| ATGTTATAGAGGAGTGATGG+TGG | 0.584052 | 5_2:+11359593 | Msa0756800:intron |
| GAAAGGATATGGATTTGTGA+AGG | 0.585887 | 5_2:-11356070 | None:intergenic |
| TAACCATGCCAAGAAAGTTG+TGG | 0.588617 | 5_2:-11359977 | None:intergenic |
| TATCCTTGCACCTATGAACC+AGG | 0.595518 | 5_2:+11356835 | Msa0756800:CDS |
| GCTGGTGCAAGATCAGCCAC+AGG | 0.596230 | 5_2:+11356806 | Msa0756800:CDS |
| ATGATGTTATAGAGGAGTGA+TGG | 0.597245 | 5_2:+11359590 | Msa0756800:intron |
| GCATTAGTAGGACTCAAACT+TGG | 0.599589 | 5_2:+11355735 | Msa0756800:CDS |
| GGTACATGTTCCCGGTTGGT+CGG | 0.601217 | 5_2:+11358914 | Msa0756800:CDS |
| ACATGCGGTTCATGTGATGC+TGG | 0.602805 | 5_2:+11356540 | Msa0756800:CDS |
| AACAGGTACATGTTCCCGGT+TGG | 0.603434 | 5_2:+11358910 | Msa0756800:CDS |
| TCTTGGGCAACCGACCAACC+GGG | 0.611820 | 5_2:-11358924 | None:intergenic |
| GCAAATGGTCATCTCACTTG+TGG | 0.614406 | 5_2:+11359641 | Msa0756800:CDS |
| TAGTGAAGATTGGTCAGATG+AGG | 0.621828 | 5_2:+11360318 | Msa0756800:three_prime_UTR |
| TTTGCTGCATCAACAGCTTG+TGG | 0.623142 | 5_2:-11359623 | None:intergenic |
| GGAGATGAAGGTATGCAACC+GGG | 0.627950 | 5_2:+11359284 | Msa0756800:intron |
| GAAGATTGGTCAGATGAGGT+AGG | 0.628182 | 5_2:+11360322 | Msa0756800:three_prime_UTR |
| CATCCTGGTTCATAGGTGCA+AGG | 0.632672 | 5_2:-11356838 | None:intergenic |
| GGTGCAGCTTCTGAAGCAGG+TGG | 0.637388 | 5_2:-11359856 | None:intergenic |
| TGGTTGTGTCATTCTACTGG+AGG | 0.640950 | 5_2:+11358612 | Msa0756800:CDS |
| GGTGGAGGTGGAGAAATTGG+AGG | 0.643553 | 5_2:-11359838 | None:intergenic |
| TCTCTTTATACAGCTGTCAG+GGG | 0.646445 | 5_2:+11360441 | Msa0756800:three_prime_UTR |
| AGATTCCATACAATAACACT+AGG | 0.646448 | 5_2:-11360087 | None:intergenic |
| TCATCTCCGTCTACTTCCGA+AGG | 0.647350 | 5_2:+11355713 | Msa0756800:CDS |
| TGCAAGGATAATTGAACCTG+TGG | 0.658279 | 5_2:-11356822 | None:intergenic |
| CTAATGCCTTCGGAAGTAGA+CGG | 0.661962 | 5_2:-11355719 | None:intergenic |
| GTGGAGGTGGAGAAATTGGA+GGG | 0.666110 | 5_2:-11359837 | None:intergenic |
| CCGAATCGTTCTCAGGCCTG+TGG | 0.668995 | 5_2:+11359389 | Msa0756800:CDS |
| TGAGGTAGGCATCAATTGTG+GGG | 0.674878 | 5_2:+11360336 | Msa0756800:three_prime_UTR |
| TAGCAGATCGGAGAAACATG+CGG | 0.699281 | 5_2:+11356525 | Msa0756800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAATAAT+TGG | + | chr5_2:11357857-11357876 | Msa0756800:intron | 0.0% |
| !! | TTGTTAATTAAGTATATTTA+AGG | + | chr5_2:11355935-11355954 | Msa0756800:intron | 10.0% |
| !! | AAAAATTTCAATTAGAATTT+AGG | - | chr5_2:11356661-11356680 | None:intergenic | 10.0% |
| !! | TTATTTATGTTAAAATTACT+TGG | + | chr5_2:11357094-11357113 | Msa0756800:intron | 10.0% |
| !!! | AAAAAATGATAAATTTTTCA+TGG | + | chr5_2:11357653-11357672 | Msa0756800:intron | 10.0% |
| !!! | AAAAATGATAAATTTTTCAT+GGG | + | chr5_2:11357654-11357673 | Msa0756800:intron | 10.0% |
| !!! | CATGTTTTATTATTAAAAAA+AGG | + | chr5_2:11358099-11358118 | Msa0756800:intron | 10.0% |
| !!! | TGTTTTATTATTAAAAAAAG+GGG | + | chr5_2:11358101-11358120 | Msa0756800:intron | 10.0% |
| !!! | TTTCAAATATATTTTTATAG+TGG | - | chr5_2:11358134-11358153 | None:intergenic | 10.0% |
| !! | AATAAAATGATAATTGAAAA+AGG | - | chr5_2:11358184-11358203 | None:intergenic | 10.0% |
| !! | AGAAAATCAAATTAAGAAAA+AGG | + | chr5_2:11355840-11355859 | Msa0756800:intron | 15.0% |
| !! | TGGACTATAATTAAAAAAAT+TGG | - | chr5_2:11355896-11355915 | None:intergenic | 15.0% |
| !! | AAAATAATTATACATAGACT+TGG | - | chr5_2:11355916-11355935 | None:intergenic | 15.0% |
| !!! | TTTTTATAATGATAATGTGA+AGG | + | chr5_2:11356724-11356743 | Msa0756800:intron | 15.0% |
| !! | TGACTTATTAAAATTAATTC+TGG | - | chr5_2:11357380-11357399 | None:intergenic | 15.0% |
| !!! | TATAATGTCTTTTTCTTTTA+GGG | + | chr5_2:11357697-11357716 | Msa0756800:intron | 15.0% |
| !!! | GTTTTATTATTAAAAAAAGG+GGG | + | chr5_2:11358102-11358121 | Msa0756800:intron | 15.0% |
| !! | AAGATACAAACTTTGTTAAT+GGG | - | chr5_2:11356636-11356655 | None:intergenic | 20.0% |
| !! | AAAGATACAAACTTTGTTAA+TGG | - | chr5_2:11356637-11356656 | None:intergenic | 20.0% |
| !! | AAGATTGAATATTGAAATTG+AGG | + | chr5_2:11357053-11357072 | Msa0756800:intron | 20.0% |
| !!! | ATTTCTTTTTTGTGTATGTT+TGG | + | chr5_2:11357189-11357208 | Msa0756800:intron | 20.0% |
| !! | ACAATAGGTTTGATAAAATA+TGG | + | chr5_2:11357472-11357491 | Msa0756800:intron | 20.0% |
| !!! | GTATAATGTCTTTTTCTTTT+AGG | + | chr5_2:11357696-11357715 | Msa0756800:intron | 20.0% |
| !!! | ATAATGTCTTTTTCTTTTAG+GGG | + | chr5_2:11357698-11357717 | Msa0756800:intron | 20.0% |
| !!! | AAAAACATGTTTTAACTACT+TGG | + | chr5_2:11359098-11359117 | Msa0756800:intron | 20.0% |
| !! | TTAATAGTATGATACGATTA+TGG | + | chr5_2:11359219-11359238 | Msa0756800:intron | 20.0% |
| !!! | ATATGTTTGAGAATTTTAGA+TGG | + | chr5_2:11359263-11359282 | Msa0756800:intron | 20.0% |
| !!! | TACTAATGATTTGTTAATGA+TGG | + | chr5_2:11359565-11359584 | Msa0756800:intron | 20.0% |
| !!! | TGCTATTGTTTAATCATTTT+AGG | - | chr5_2:11359707-11359726 | None:intergenic | 20.0% |
| !!! | TACAATAAGGTAAAGTTTTA+TGG | - | chr5_2:11359759-11359778 | None:intergenic | 20.0% |
| !! | TAAATCGTTTCATCTTTATA+AGG | - | chr5_2:11360415-11360434 | None:intergenic | 20.0% |
| !! | TATAAAGATGAAACGATTTA+TGG | + | chr5_2:11360415-11360434 | Msa0756800:three_prime_UTR | 20.0% |
| !! | AAAAAAAAAAAAAGCTGTCA+TGG | + | chr5_2:11360479-11360498 | Msa0756800:three_prime_UTR | 20.0% |
| ! | AAAAACACCTTAAACTTGAA+AGG | - | chr5_2:11355762-11355781 | None:intergenic | 25.0% |
| ! | TCTTTCATAAGAAGTGATTA+AGG | - | chr5_2:11356008-11356027 | None:intergenic | 25.0% |
| ! | TAAACACAAAAGTAGAATGA+AGG | + | chr5_2:11356173-11356192 | Msa0756800:CDS | 25.0% |
| !! | TTGTATGGATTAAAAACAAC+AGG | - | chr5_2:11356340-11356359 | None:intergenic | 25.0% |
| ! | TGACGATTAATACAAAGATT+TGG | - | chr5_2:11356382-11356401 | None:intergenic | 25.0% |
| ! | AATTATTATTACCTTCAAGC+TGG | - | chr5_2:11356426-11356445 | None:intergenic | 25.0% |
| ! | AGATACAAACTTTGTTAATG+GGG | - | chr5_2:11356635-11356654 | None:intergenic | 25.0% |
| ! | TATGAATGTGAATAGTCTAT+TGG | + | chr5_2:11356959-11356978 | Msa0756800:intron | 25.0% |
| ! | TAAATAAAAACTAGTTGAGC+TGG | - | chr5_2:11357081-11357100 | None:intergenic | 25.0% |
| !! | AGTACAAGTAGAATCAATTT+TGG | - | chr5_2:11357231-11357250 | None:intergenic | 25.0% |
| ! | CGGGAATTATCAATAAAAAA+GGG | - | chr5_2:11357540-11357559 | None:intergenic | 25.0% |
| ! | ACGGGAATTATCAATAAAAA+AGG | - | chr5_2:11357541-11357560 | None:intergenic | 25.0% |
| !!! | TTTTTTATTGATAATTCCCG+TGG | + | chr5_2:11357540-11357559 | Msa0756800:intron | 25.0% |
| ! | TATACATGTTCATTGTTCAA+TGG | + | chr5_2:11358029-11358048 | Msa0756800:intron | 25.0% |
| ! | ATACATGTTCATTGTTCAAT+GGG | + | chr5_2:11358030-11358049 | Msa0756800:intron | 25.0% |
| ! | CAGCATCTAATCTTAAAATA+TGG | - | chr5_2:11358217-11358236 | None:intergenic | 25.0% |
| !! | GCAATTTTATAAACCAAAGA+AGG | + | chr5_2:11358342-11358361 | Msa0756800:intron | 25.0% |
| ! | AATAATCACCATCTTTATTG+AGG | + | chr5_2:11358834-11358853 | Msa0756800:CDS | 25.0% |
| ! | AACATAATCCTCAATAAAGA+TGG | - | chr5_2:11358845-11358864 | None:intergenic | 25.0% |
| !!! | GTAGTTAAAACATGTTTTTG+AGG | - | chr5_2:11359097-11359116 | None:intergenic | 25.0% |
| ! | GTACACAGTTAAATACAATA+AGG | - | chr5_2:11359772-11359791 | None:intergenic | 25.0% |
| ! | GTGTACTAATATATATGTTC+AGG | + | chr5_2:11359786-11359805 | Msa0756800:intron | 25.0% |
| ! | TTGTTTGCTTGACTATTATT+AGG | - | chr5_2:11359901-11359920 | None:intergenic | 25.0% |
| !! | ATAACCTGAAAAGACATTTT+TGG | - | chr5_2:11360286-11360305 | None:intergenic | 25.0% |
| ! | ACAGGAAAAAAGTTGAATTA+TGG | + | chr5_2:11360372-11360391 | Msa0756800:three_prime_UTR | 25.0% |
| !! | TTTATAAGGTATCTCATAAG+TGG | - | chr5_2:11360401-11360420 | None:intergenic | 25.0% |
| AAGAGGAAAAAAGCTGATTA+AGG | - | chr5_2:11356050-11356069 | None:intergenic | 30.0% | |
| !! | TCTACTTTTGTGTTTAGAGA+GGG | - | chr5_2:11356169-11356188 | None:intergenic | 30.0% |
| !! | TTCTACTTTTGTGTTTAGAG+AGG | - | chr5_2:11356170-11356189 | None:intergenic | 30.0% |
| ! | ATGATTAGTTGAAGATGCAT+AGG | - | chr5_2:11356214-11356233 | None:intergenic | 30.0% |
| ! | AATGATAATGTGAAGGTGAA+AGG | + | chr5_2:11356731-11356750 | Msa0756800:intron | 30.0% |
| TGAAAGGTTTACCGTTTAAT+CGG | + | chr5_2:11356747-11356766 | Msa0756800:CDS | 30.0% | |
| CTTATGTGACAACTAAGAAA+TGG | + | chr5_2:11357122-11357141 | Msa0756800:intron | 30.0% | |
| !! | CCTTTCTAGTTTCTATTCTA+CGG | + | chr5_2:11357439-11357458 | Msa0756800:intron | 30.0% |
| ACAATGCATCATGTTAAAGA+AGG | - | chr5_2:11357567-11357586 | None:intergenic | 30.0% | |
| TCTTTAACATGATGCATTGT+AGG | + | chr5_2:11357567-11357586 | Msa0756800:intron | 30.0% | |
| ! | ATGGGATGTCTTTTTCTTTT+AGG | + | chr5_2:11357672-11357691 | Msa0756800:intron | 30.0% |
| ! | TGGGATGTCTTTTTCTTTTA+GGG | + | chr5_2:11357673-11357692 | Msa0756800:intron | 30.0% |
| CTAGTAGTTGTTGAATTAGT+TGG | + | chr5_2:11357894-11357913 | Msa0756800:intron | 30.0% | |
| GTCACAATTACAACATGATA+CGG | + | chr5_2:11358287-11358306 | Msa0756800:intron | 30.0% | |
| TGTTGTGTATCTTAACAGAA+TGG | + | chr5_2:11358543-11358562 | Msa0756800:intron | 30.0% | |
| ! | ATGATTTTCAAAACGACGTA+TGG | + | chr5_2:11358592-11358611 | Msa0756800:CDS | 30.0% |
| TTCATCGATCACATAAACTT+TGG | + | chr5_2:11358697-11358716 | Msa0756800:intron | 30.0% | |
| CATTGATAGACATAGACAAA+TGG | - | chr5_2:11358747-11358766 | None:intergenic | 30.0% | |
| TGTCTATGTCTATCAATGAT+CGG | + | chr5_2:11358749-11358768 | Msa0756800:intron | 30.0% | |
| AAGATGGTGATTATTTCAGA+TGG | - | chr5_2:11358829-11358848 | None:intergenic | 30.0% | |
| TGTGCAGTAAATAAGTGAAT+TGG | + | chr5_2:11359190-11359209 | Msa0756800:intron | 30.0% | |
| GTGCAGTAAATAAGTGAATT+GGG | + | chr5_2:11359191-11359210 | Msa0756800:intron | 30.0% | |
| ! | AGAATTTTAGATGGAGATGA+AGG | + | chr5_2:11359272-11359291 | Msa0756800:intron | 30.0% |
| TAATCAACAGCGATGAAATT+TGG | - | chr5_2:11359479-11359498 | None:intergenic | 30.0% | |
| CATCAAATCGTTAATCACAA+AGG | + | chr5_2:11359534-11359553 | Msa0756800:intron | 30.0% | |
| TGATGGTTATGATGTTATAG+AGG | + | chr5_2:11359582-11359601 | Msa0756800:intron | 30.0% | |
| !!! | GTTTAATCATTTTAGGATGC+AGG | - | chr5_2:11359700-11359719 | None:intergenic | 30.0% |
| ! | TGATTCCTAGTGTTATTGTA+TGG | + | chr5_2:11360082-11360101 | Msa0756800:three_prime_UTR | 30.0% |
| AGATTCCATACAATAACACT+AGG | - | chr5_2:11360090-11360109 | None:intergenic | 30.0% | |
| !!! | TTTATGGTTGTGTTTTGACT+TGG | + | chr5_2:11360135-11360154 | Msa0756800:three_prime_UTR | 30.0% |
| GTTGAATGATTCACAACTAT+TGG | + | chr5_2:11360161-11360180 | Msa0756800:three_prime_UTR | 30.0% | |
| !! | TACATAGCATAAGCTGTTTT+TGG | + | chr5_2:11360193-11360212 | Msa0756800:three_prime_UTR | 30.0% |
| AGTTCACTTAAGAAACTTGT+CGG | - | chr5_2:11360236-11360255 | None:intergenic | 30.0% | |
| GGAAAAAAGTTGAATTATGG+TGG | + | chr5_2:11360375-11360394 | Msa0756800:three_prime_UTR | 30.0% | |
| !! | ACTTGGTCCTTTCAAGTTTA+AGG | + | chr5_2:11355752-11355771 | Msa0756800:CDS | 35.0% |
| ATATGGATTTGTGAAGGAAG+AGG | - | chr5_2:11356067-11356086 | None:intergenic | 35.0% | |
| GAAAGGATATGGATTTGTGA+AGG | - | chr5_2:11356073-11356092 | None:intergenic | 35.0% | |
| AGATAGCAACAGAAAGGATA+TGG | - | chr5_2:11356084-11356103 | None:intergenic | 35.0% | |
| AGTTGAAGATAGCAACAGAA+AGG | - | chr5_2:11356090-11356109 | None:intergenic | 35.0% | |
| GCAGAAAACGAAACATTGTA+TGG | - | chr5_2:11356355-11356374 | None:intergenic | 35.0% | |
| !! | AACCATGAGTACCGATTAAA+CGG | - | chr5_2:11356761-11356780 | None:intergenic | 35.0% |
| GACGCATAATTCATTTGCTT+TGG | + | chr5_2:11356784-11356803 | Msa0756800:CDS | 35.0% | |
| CATAATTCATTTGCTTTGGC+TGG | + | chr5_2:11356788-11356807 | Msa0756800:CDS | 35.0% | |
| GACAACTAAGAAATGGTCTA+TGG | + | chr5_2:11357129-11357148 | Msa0756800:intron | 35.0% | |
| CTTGTACTGTAGCTATAGAT+TGG | + | chr5_2:11357243-11357262 | Msa0756800:intron | 35.0% | |
| CCGTAGAATAGAAACTAGAA+AGG | - | chr5_2:11357442-11357461 | None:intergenic | 35.0% | |
| TACGGTCAAACAAACACAAT+AGG | + | chr5_2:11357457-11357476 | Msa0756800:intron | 35.0% | |
| ATTAATCCTTCTCTTCCTTG+TGG | + | chr5_2:11357514-11357533 | Msa0756800:intron | 35.0% | |
| ATCAATAAAAAAGGGCCACA+AGG | - | chr5_2:11357532-11357551 | None:intergenic | 35.0% | |
| ATCATGTTAAAGAAGGTCCA+CGG | - | chr5_2:11357560-11357579 | None:intergenic | 35.0% | |
| ! | GGGATGTCTTTTTCTTTTAG+GGG | + | chr5_2:11357674-11357693 | Msa0756800:intron | 35.0% |
| TGTTGACCACATAAATGAAG+TGG | + | chr5_2:11357779-11357798 | Msa0756800:intron | 35.0% | |
| GTTGACCACATAAATGAAGT+GGG | + | chr5_2:11357780-11357799 | Msa0756800:intron | 35.0% | |
| TGGCACGGTTGAAATAAAAT+TGG | + | chr5_2:11357814-11357833 | Msa0756800:intron | 35.0% | |
| AAGTAAGATGTGTGCTTTCA+AGG | - | chr5_2:11357998-11358017 | None:intergenic | 35.0% | |
| ! | AGCACACATCTTACTTGTTA+AGG | + | chr5_2:11358002-11358021 | Msa0756800:intron | 35.0% |
| GGCAATCGTGTATTCTAATT+TGG | + | chr5_2:11358363-11358382 | Msa0756800:intron | 35.0% | |
| ! | CACATAAACTTTGGTGTGTT+TGG | + | chr5_2:11358706-11358725 | Msa0756800:intron | 35.0% |
| ! | CGATAAATCGTTGATTGTTC+AGG | - | chr5_2:11358984-11359003 | None:intergenic | 35.0% |
| ! | CTAGATTTTGTGTTCATTGG+TGG | - | chr5_2:11359335-11359354 | None:intergenic | 35.0% |
| CACCAATGAACACAAAATCT+AGG | + | chr5_2:11359333-11359352 | Msa0756800:CDS | 35.0% | |
| ! | GACCTAGATTTTGTGTTCAT+TGG | - | chr5_2:11359338-11359357 | None:intergenic | 35.0% |
| GTCTTCATCATGCTAAGTAA+TGG | - | chr5_2:11359428-11359447 | None:intergenic | 35.0% | |
| ! | CATCGCTGTTGATTATTATC+AGG | + | chr5_2:11359484-11359503 | Msa0756800:CDS | 35.0% |
| ATGATGTTATAGAGGAGTGA+TGG | + | chr5_2:11359590-11359609 | Msa0756800:intron | 35.0% | |
| AGCATATGCTGCATATTCAT+TGG | + | chr5_2:11359723-11359742 | Msa0756800:intron | 35.0% | |
| GACTATTATTAGGAGACTTC+TGG | - | chr5_2:11359891-11359910 | None:intergenic | 35.0% | |
| CAAGCAAACAATGCATATAG+TGG | + | chr5_2:11359910-11359929 | Msa0756800:CDS | 35.0% | |
| ! | AACAGCTATGATGATGCAAT+TGG | + | chr5_2:11359936-11359955 | Msa0756800:CDS | 35.0% |
| GCAATTGGTTGTGTTAACTT+TGG | + | chr5_2:11359951-11359970 | Msa0756800:CDS | 35.0% | |
| TTTGGTTACCACAACTTTCT+TGG | + | chr5_2:11359969-11359988 | Msa0756800:CDS | 35.0% | |
| !!! | TGAGTCCTTTTTTCATCACT+CGG | + | chr5_2:11360109-11360128 | Msa0756800:three_prime_UTR | 35.0% |
| !!! | CTGAAAAGACATTTTTGGCA+TGG | - | chr5_2:11360281-11360300 | None:intergenic | 35.0% |
| ! | CATGCCAAAAATGTCTTTTC+AGG | + | chr5_2:11360279-11360298 | Msa0756800:three_prime_UTR | 35.0% |
| AACTGAGATCTAGTGAAGAT+TGG | + | chr5_2:11360308-11360327 | Msa0756800:three_prime_UTR | 35.0% | |
| TTGAGTCCTACTAATGCCTT+CGG | - | chr5_2:11355732-11355751 | None:intergenic | 40.0% | |
| GCATTAGTAGGACTCAAACT+TGG | + | chr5_2:11355735-11355754 | Msa0756800:CDS | 40.0% | |
| TTTAAGGACGTACCTAACGA+AGG | + | chr5_2:11355951-11355970 | Msa0756800:intron | 40.0% | |
| CACATATTCATCCAGCTTGA+AGG | + | chr5_2:11356412-11356431 | Msa0756800:CDS | 40.0% | |
| TGTCAAACATGTCCTGCAAA+TGG | + | chr5_2:11356570-11356589 | Msa0756800:CDS | 40.0% | |
| GATAGTATCCTGCTACATCT+GGG | - | chr5_2:11356606-11356625 | None:intergenic | 40.0% | |
| AGATAGTATCCTGCTACATC+TGG | - | chr5_2:11356607-11356626 | None:intergenic | 40.0% | |
| TACCGTTTAATCGGTACTCA+TGG | + | chr5_2:11356756-11356775 | Msa0756800:CDS | 40.0% | |
| TGCAAGGATAATTGAACCTG+TGG | - | chr5_2:11356825-11356844 | None:intergenic | 40.0% | |
| ATAGTGTCATCCTGGTTCAT+AGG | - | chr5_2:11356848-11356867 | None:intergenic | 40.0% | |
| CTAGAAAGGTCGTGTATGTT+TGG | - | chr5_2:11357428-11357447 | None:intergenic | 40.0% | |
| TATGGAAGTCCATGCATACA+CGG | + | chr5_2:11357490-11357509 | Msa0756800:intron | 40.0% | |
| TCATGTTAAAGAAGGTCCAC+GGG | - | chr5_2:11357559-11357578 | None:intergenic | 40.0% | |
| CTACACCCACTTCATTTATG+TGG | - | chr5_2:11357788-11357807 | None:intergenic | 40.0% | |
| GAATACACGATTGCCTTCTT+TGG | - | chr5_2:11358358-11358377 | None:intergenic | 40.0% | |
| TCTTAACAGAATGGTGTTCG+AGG | + | chr5_2:11358552-11358571 | Msa0756800:intron | 40.0% | |
| ! | GTATGGTTGTGTCATTCTAC+TGG | + | chr5_2:11358609-11358628 | Msa0756800:CDS | 40.0% |
| TAGAGACATGCGTTCATTTC+TGG | + | chr5_2:11358795-11358814 | Msa0756800:CDS | 40.0% | |
| AGCTTGGAAGACCTTAGTTA+GGG | - | chr5_2:11358881-11358900 | None:intergenic | 40.0% | |
| AAGCTTGGAAGACCTTAGTT+AGG | - | chr5_2:11358882-11358901 | None:intergenic | 40.0% | |
| GATTAACAGGTACATGTTCC+CGG | + | chr5_2:11358906-11358925 | Msa0756800:CDS | 40.0% | |
| ATTCTCCTCAAGATCTTCCA+AGG | + | chr5_2:11359005-11359024 | Msa0756800:intron | 40.0% | |
| AGGCATGCAATTACTCACAT+TGG | - | chr5_2:11359077-11359096 | None:intergenic | 40.0% | |
| !! | TTTCGATTTGGACAAGAACC+CGG | - | chr5_2:11359305-11359324 | None:intergenic | 40.0% |
| ATGTTATAGAGGAGTGATGG+TGG | + | chr5_2:11359593-11359612 | Msa0756800:intron | 40.0% | |
| TGACAGCATTGCTTATTGCA+AGG | + | chr5_2:11359667-11359686 | Msa0756800:CDS | 40.0% | |
| TTACCACAACTTTCTTGGCA+TGG | + | chr5_2:11359974-11359993 | Msa0756800:CDS | 40.0% | |
| TAACCATGCCAAGAAAGTTG+TGG | - | chr5_2:11359980-11359999 | None:intergenic | 40.0% | |
| !! | AAGTGCCGAGTGATGAAAAA+AGG | - | chr5_2:11360117-11360136 | None:intergenic | 40.0% |
| TTTCATCACTCGGCACTTTA+TGG | + | chr5_2:11360119-11360138 | Msa0756800:three_prime_UTR | 40.0% | |
| GTGAACTACCAAATTTGAGC+TGG | + | chr5_2:11360249-11360268 | Msa0756800:three_prime_UTR | 40.0% | |
| ! | TAGTGAAGATTGGTCAGATG+AGG | + | chr5_2:11360318-11360337 | Msa0756800:three_prime_UTR | 40.0% |
| ATGAGGTAGGCATCAATTGT+GGG | + | chr5_2:11360335-11360354 | Msa0756800:three_prime_UTR | 40.0% | |
| ACTCTCTTTATACAGCTGTC+AGG | + | chr5_2:11360439-11360458 | Msa0756800:three_prime_UTR | 40.0% | |
| CTCTCTTTATACAGCTGTCA+GGG | + | chr5_2:11360440-11360459 | Msa0756800:three_prime_UTR | 40.0% | |
| TCTCTTTATACAGCTGTCAG+GGG | + | chr5_2:11360441-11360460 | Msa0756800:three_prime_UTR | 40.0% | |
| CTAATGCCTTCGGAAGTAGA+CGG | - | chr5_2:11355722-11355741 | None:intergenic | 45.0% | |
| !! | CTACTTCCGAAGGCATTAGT+AGG | + | chr5_2:11355723-11355742 | Msa0756800:CDS | 45.0% |
| !! | CACGTCTTGTTTCCTTCGTT+AGG | - | chr5_2:11355966-11355985 | None:intergenic | 45.0% |
| GTTTCTAACCACCATGTACG+AGG | + | chr5_2:11356502-11356521 | Msa0756800:intron | 45.0% | |
| TAGCAGATCGGAGAAACATG+CGG | + | chr5_2:11356525-11356544 | Msa0756800:intron | 45.0% | |
| GGACGTGTATTTCCATTTGC+AGG | - | chr5_2:11356585-11356604 | None:intergenic | 45.0% | |
| TATCCTTGCACCTATGAACC+AGG | + | chr5_2:11356835-11356854 | Msa0756800:CDS | 45.0% | |
| GATCAGCAATAGTGTCATCC+TGG | - | chr5_2:11356856-11356875 | None:intergenic | 45.0% | |
| ATGGAAGTCCATGCATACAC+GGG | + | chr5_2:11357491-11357510 | Msa0756800:intron | 45.0% | |
| GGATTAATCCCGTGTATGCA+TGG | - | chr5_2:11357502-11357521 | None:intergenic | 45.0% | |
| TGAAGTGGGTGTAGTGTAGA+TGG | + | chr5_2:11357794-11357813 | Msa0756800:intron | 45.0% | |
| ! | TGGTTGTGTCATTCTACTGG+AGG | + | chr5_2:11358612-11358631 | Msa0756800:CDS | 45.0% |
| TCAGTTCATTCGTAAGTGCG+TGG | + | chr5_2:11358649-11358668 | Msa0756800:intron | 45.0% | |
| ACTAAGGTCTTCCAAGCTTC+AGG | + | chr5_2:11358883-11358902 | Msa0756800:CDS | 45.0% | |
| CTAAGGTCTTCCAAGCTTCA+GGG | + | chr5_2:11358884-11358903 | Msa0756800:CDS | 45.0% | |
| TCCAAGCTTCAGGGATTAAC+AGG | + | chr5_2:11358893-11358912 | Msa0756800:CDS | 45.0% | |
| ACCTGTTAATCCCTGAAGCT+TGG | - | chr5_2:11358897-11358916 | None:intergenic | 45.0% | |
| AGGATCATGTCATCGACAAC+AGG | - | chr5_2:11358964-11358983 | None:intergenic | 45.0% | |
| TGCTTCCTTGGAAGATCTTG+AGG | - | chr5_2:11359013-11359032 | None:intergenic | 45.0% | |
| ACGACGTATTTCCACGTGAA+AGG | - | chr5_2:11359048-11359067 | None:intergenic | 45.0% | |
| ! | TGGAGATGAAGGTATGCAAC+CGG | + | chr5_2:11359283-11359302 | Msa0756800:intron | 45.0% |
| GGTGGCGATTCATTTCGATT+TGG | - | chr5_2:11359317-11359336 | None:intergenic | 45.0% | |
| TTCTACACCGAATCGTTCTC+AGG | + | chr5_2:11359382-11359401 | Msa0756800:CDS | 45.0% | |
| CAGCGATGAAATTTGGCCAT+CGG | - | chr5_2:11359472-11359491 | None:intergenic | 45.0% | |
| !! | TTATAGAGGAGTGATGGTGG+AGG | + | chr5_2:11359596-11359615 | Msa0756800:intron | 45.0% |
| TTTGCTGCATCAACAGCTTG+TGG | - | chr5_2:11359626-11359645 | None:intergenic | 45.0% | |
| CAAGCTGTTGATGCAGCAAA+TGG | + | chr5_2:11359626-11359645 | Msa0756800:CDS | 45.0% | |
| GCAAATGGTCATCTCACTTG+TGG | + | chr5_2:11359641-11359660 | Msa0756800:CDS | 45.0% | |
| GTTCAGGCAAATGCTACGTT+TGG | + | chr5_2:11359802-11359821 | Msa0756800:intron | 45.0% | |
| !! | GGAGACTTCTGGTTTCCATT+TGG | - | chr5_2:11359880-11359899 | None:intergenic | 45.0% |
| ! | GAAGATTGGTCAGATGAGGT+AGG | + | chr5_2:11360322-11360341 | Msa0756800:three_prime_UTR | 45.0% |
| GATGAGGTAGGCATCAATTG+TGG | + | chr5_2:11360334-11360353 | Msa0756800:three_prime_UTR | 45.0% | |
| TGAGGTAGGCATCAATTGTG+GGG | + | chr5_2:11360336-11360355 | Msa0756800:three_prime_UTR | 45.0% | |
| TGGGGCTTCATATTTCTCAC+AGG | + | chr5_2:11360354-11360373 | Msa0756800:three_prime_UTR | 45.0% | |
| !! | AATAATAAAAAATATGAAAA+GGG | - | chr5_2:11356901-11356920 | None:intergenic | 5.0% |
| !! | TAATAATAAAAAATATGAAA+AGG | - | chr5_2:11356902-11356921 | None:intergenic | 5.0% |
| !!! | CATATTTTTTATTATTATTA+TGG | + | chr5_2:11356905-11356924 | Msa0756800:intron | 5.0% |
| !!! | ATGTTTTATTATTAAAAAAA+GGG | + | chr5_2:11358100-11358119 | Msa0756800:intron | 5.0% |
| TCATCTCCGTCTACTTCCGA+AGG | + | chr5_2:11355713-11355732 | Msa0756800:CDS | 50.0% | |
| ATCTGCTACCTCGTACATGG+TGG | - | chr5_2:11356513-11356532 | None:intergenic | 50.0% | |
| CCATGTACGAGGTAGCAGAT+CGG | + | chr5_2:11356513-11356532 | Msa0756800:intron | 50.0% | |
| ACATGCGGTTCATGTGATGC+TGG | + | chr5_2:11356540-11356559 | Msa0756800:CDS | 50.0% | |
| ATACACGTCCCAGATGTAGC+AGG | + | chr5_2:11356595-11356614 | Msa0756800:CDS | 50.0% | |
| CATCCTGGTTCATAGGTGCA+AGG | - | chr5_2:11356841-11356860 | None:intergenic | 50.0% | |
| AAAGGGCCACAAGGAAGAGA+AGG | - | chr5_2:11357523-11357542 | None:intergenic | 50.0% | |
| TGGGTGTAGTGTAGATGGCA+CGG | + | chr5_2:11357799-11357818 | Msa0756800:intron | 50.0% | |
| TCTCTAAGCGCGTTTACTGC+AGG | - | chr5_2:11358781-11358800 | None:intergenic | 50.0% | |
| AAGACCTTAGTTAGGGCTGC+AGG | - | chr5_2:11358874-11358893 | None:intergenic | 50.0% | |
| AACAGGTACATGTTCCCGGT+TGG | + | chr5_2:11358910-11358929 | Msa0756800:CDS | 50.0% | |
| TCTTCCAAGGAAGCAGCTGA+AGG | + | chr5_2:11359018-11359037 | Msa0756800:intron | 50.0% | |
| AATGCCTTCAGCTGCTTCCT+TGG | - | chr5_2:11359025-11359044 | None:intergenic | 50.0% | |
| !! | CTGAAGGCATTCCTTTCACG+TGG | + | chr5_2:11359034-11359053 | Msa0756800:intron | 50.0% |
| ! | GGAGATGAAGGTATGCAACC+GGG | + | chr5_2:11359284-11359303 | Msa0756800:intron | 50.0% |
| AAGACTTGCCATGAAGCTGC+CGG | + | chr5_2:11359443-11359462 | Msa0756800:CDS | 50.0% | |
| ! | GAAATTTGGCCATCGGTTGC+CGG | - | chr5_2:11359465-11359484 | None:intergenic | 50.0% |
| GTGGAGGTGGAGAAATTGGA+GGG | - | chr5_2:11359840-11359859 | None:intergenic | 50.0% | |
| !! | TTTGGTGCAGCTTCTGAAGC+AGG | - | chr5_2:11359862-11359881 | None:intergenic | 50.0% |
| GCTTCAGAAGCTGCACCAAA+TGG | + | chr5_2:11359862-11359881 | Msa0756800:CDS | 50.0% | |
| ! | GGCTTGCTCCAGCTCAAATT+TGG | - | chr5_2:11360260-11360279 | None:intergenic | 50.0% |
| CCGATCTGCTACCTCGTACA+TGG | - | chr5_2:11356516-11356535 | None:intergenic | 55.0% | |
| AGCTCCTGCAGCCCTAACTA+AGG | + | chr5_2:11358867-11358886 | Msa0756800:CDS | 55.0% | |
| GGTACATGTTCCCGGTTGGT+CGG | + | chr5_2:11358914-11358933 | Msa0756800:CDS | 55.0% | |
| TTCTTGGGCAACCGACCAAC+CGG | - | chr5_2:11358928-11358947 | None:intergenic | 55.0% | |
| GTTGGTCGGTTGCCCAAGAA+CGG | + | chr5_2:11358928-11358947 | Msa0756800:CDS | 55.0% | |
| TGCCCAAGAACGGTAGCGAT+TGG | + | chr5_2:11358938-11358957 | Msa0756800:intron | 55.0% | |
| GGCCAATCGCTACCGTTCTT+GGG | - | chr5_2:11358943-11358962 | None:intergenic | 55.0% | |
| AGGCCAATCGCTACCGTTCT+TGG | - | chr5_2:11358944-11358963 | None:intergenic | 55.0% | |
| CCACAGGCCTGAGAACGATT+CGG | - | chr5_2:11359392-11359411 | None:intergenic | 55.0% | |
| TGGAGCTGAATTGTCGCCAC+AGG | - | chr5_2:11359408-11359427 | None:intergenic | 55.0% | |
| GGTGGAGGTGGAGAAATTGG+AGG | - | chr5_2:11359841-11359860 | None:intergenic | 55.0% | |
| GCAGGTGGAGGTGGAGAAAT+TGG | - | chr5_2:11359844-11359863 | None:intergenic | 55.0% | |
| GCTGGTGCAAGATCAGCCAC+AGG | + | chr5_2:11356806-11356825 | Msa0756800:CDS | 60.0% | |
| TCTTGGGCAACCGACCAACC+GGG | - | chr5_2:11358927-11358946 | None:intergenic | 60.0% | |
| CCGAATCGTTCTCAGGCCTG+TGG | + | chr5_2:11359389-11359408 | Msa0756800:CDS | 60.0% | |
| ATCGGTTGCCGGCAGCTTCA+TGG | - | chr5_2:11359454-11359473 | None:intergenic | 60.0% | |
| ATGAAGCTGCCGGCAACCGA+TGG | + | chr5_2:11359453-11359472 | Msa0756800:CDS | 60.0% | |
| !! | GCTTCTGAAGCAGGTGGAGG+TGG | - | chr5_2:11359853-11359872 | None:intergenic | 60.0% |
| !! | GCAGCTTCTGAAGCAGGTGG+AGG | - | chr5_2:11359856-11359875 | None:intergenic | 60.0% |
| !! | GGTGCAGCTTCTGAAGCAGG+TGG | - | chr5_2:11359859-11359878 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11355699 | 11360524 | 11355699 | ID=Msa0756800;Name=Msa0756800 |
| chr5_2 | mRNA | 11355699 | 11360524 | 11355699 | ID=Msa0756800-mRNA-1;Parent=Msa0756800;Name=Msa0756800-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.77|0.6|0.9|0.44|0.6|10|522|429 |
| chr5_2 | exon | 11355699 | 11355773 | 11355699 | ID=Msa0756800-mRNA-1:exon:5097;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11356057 | 11356194 | 11356057 | ID=Msa0756800-mRNA-1:exon:5098;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11356377 | 11356433 | 11356377 | ID=Msa0756800-mRNA-1:exon:5099;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11356531 | 11356644 | 11356531 | ID=Msa0756800-mRNA-1:exon:5100;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11356746 | 11356883 | 11356746 | ID=Msa0756800-mRNA-1:exon:5101;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11358561 | 11358659 | 11358561 | ID=Msa0756800-mRNA-1:exon:5102;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11358775 | 11358949 | 11358775 | ID=Msa0756800-mRNA-1:exon:5103;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11359294 | 11359505 | 11359294 | ID=Msa0756800-mRNA-1:exon:5104;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11359602 | 11359688 | 11359602 | ID=Msa0756800-mRNA-1:exon:5105;Parent=Msa0756800-mRNA-1 |
| chr5_2 | exon | 11359808 | 11360524 | 11359808 | ID=Msa0756800-mRNA-1:exon:5106;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11355699 | 11355773 | 11355699 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11356057 | 11356194 | 11356057 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11356377 | 11356433 | 11356377 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11356531 | 11356644 | 11356531 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11356746 | 11356883 | 11356746 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11358561 | 11358659 | 11358561 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11358775 | 11358949 | 11358775 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11359294 | 11359505 | 11359294 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11359602 | 11359688 | 11359602 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | CDS | 11359808 | 11360002 | 11359808 | ID=Msa0756800-mRNA-1:cds;Parent=Msa0756800-mRNA-1 |
| chr5_2 | three_prime_UTR | 11360003 | 11360524 | 11360003 | ID=Msa0756800-mRNA-1:three_prime_utr;Parent=Msa0756800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
