Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837670 | XP_003612320.1 | 98.086 | 418 | 8 | 0 | 7 | 424 | 505 | 922 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837670 | sp|Q8S2T0|GRIP_ARATH | 66.047 | 430 | 132 | 4 | 7 | 424 | 361 | 788 | 5.84e-167 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837670 | G7K011 | 98.086 | 418 | 8 | 0 | 7 | 424 | 505 | 922 | 0.0 | 826 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717890 | Msa0837670 | 0.844647 | 6.640627e-59 | -8.615850e-47 |
| Msa0837670 | Msa1004970 | 0.800088 | 1.698338e-48 | -8.615850e-47 |
| Msa0837670 | Msa1464810 | 0.808044 | 3.758315e-50 | -8.615850e-47 |
| Msa0479170 | Msa0837670 | 0.811166 | 8.020784e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837670 | MtrunA17_Chr5g0406721 | 98.086 | 418 | 8 | 0 | 7 | 424 | 505 | 922 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837670 | AT5G66030.1 | 66.047 | 430 | 132 | 4 | 7 | 424 | 361 | 788 | 5.94e-168 | 491 |
| Msa0837670 | AT5G66030.2 | 63.765 | 425 | 127 | 3 | 7 | 424 | 361 | 765 | 5.00e-158 | 465 |
| Msa0837670 | AT5G66030.3 | 65.583 | 369 | 120 | 2 | 7 | 368 | 361 | 729 | 2.96e-136 | 408 |
| Msa0837670 | AT5G66030.4 | 62.145 | 317 | 113 | 2 | 7 | 316 | 361 | 677 | 2.20e-108 | 334 |
Find 100 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTCTCATTTACTTAA+TGG | 0.104508 | 5_4:+11700235 | Msa0837670:CDS |
| TTCTGCTTGTTATTTGATTC+TGG | 0.141459 | 5_4:+11700506 | Msa0837670:three_prime_UTR |
| CATGAAGATCTGCTTCTTAT+TGG | 0.156789 | 5_4:+11700727 | Msa0837670:three_prime_UTR |
| TTAATATGTACTTCTTATTT+TGG | 0.160688 | 5_4:-11695207 | None:intergenic |
| TATCCTCAACGTTTCTTTAC+AGG | 0.182885 | 5_4:-11700441 | None:intergenic |
| CGGAGTTGTATTGTTATTAT+AGG | 0.237433 | 5_4:+11700774 | Msa0837670:three_prime_UTR |
| TGCTAGCTCTTCCTCCCTTT+GGG | 0.241742 | 5_4:-11698730 | None:intergenic |
| ATGTACAGCCTTGCATAAAT+TGG | 0.254936 | 5_4:+11698306 | Msa0837670:intron |
| GAAGTATTGCTACCAGTTAT+TGG | 0.264528 | 5_4:+11699526 | Msa0837670:CDS |
| GTGCTAGCTCTTCCTCCCTT+TGG | 0.277076 | 5_4:-11698731 | None:intergenic |
| GTAAATTAGAAAATATATAT+TGG | 0.284322 | 5_4:+11700374 | Msa0837670:three_prime_UTR |
| AAGCTGGGAGGCTGCATCTC+TGG | 0.322039 | 5_4:+11695124 | Msa0837670:CDS |
| TGCAGTTGCTCTCGGCAATT+TGG | 0.322122 | 5_4:-11695163 | None:intergenic |
| ATTAGTTAGAACCTCTTCTT+TGG | 0.331826 | 5_4:-11695362 | None:intergenic |
| TGAAATGTTTAGAAATTTGC+TGG | 0.332103 | 5_4:+11695006 | None:intergenic |
| AAGGATAATTCTCATTCCTT+TGG | 0.337535 | 5_4:-11700640 | None:intergenic |
| CTTATCTGAGCTTGTGTAAG+AGG | 0.354127 | 5_4:+11700832 | Msa0837670:three_prime_UTR |
| GATCCTGAAGAGTCGCTTGC+AGG | 0.356621 | 5_4:-11700195 | None:intergenic |
| AATTGTTCAATGCAAGAGTT+TGG | 0.360176 | 5_4:+11700408 | Msa0837670:three_prime_UTR |
| AAGTATTGCTACCAGTTATT+GGG | 0.380552 | 5_4:+11699527 | Msa0837670:CDS |
| CACATGATTTCCATGTGAAA+AGG | 0.389458 | 5_4:+11700920 | Msa0837670:three_prime_UTR |
| GTGTAAGAGGTTGGTGCTGC+AGG | 0.392104 | 5_4:+11700845 | Msa0837670:three_prime_UTR |
| ATATCAAATTTCTTATATGA+TGG | 0.399322 | 5_4:+11700952 | Msa0837670:three_prime_UTR |
| AGAAGATATGCAGAAGGAAT+TGG | 0.406447 | 5_4:+11697716 | Msa0837670:CDS |
| TGAAGCAGCATCCCAATAAC+TGG | 0.416643 | 5_4:-11699538 | None:intergenic |
| ATCTTAAAGCTTCTTGAGAC+AGG | 0.425588 | 5_4:+11699381 | Msa0837670:CDS |
| CCTAAAAGAGAAAGAGGAAT+GGG | 0.431476 | 5_4:+11697528 | Msa0837670:CDS |
| AGTCCTGCAAGCGACTCTTC+AGG | 0.438561 | 5_4:+11700192 | Msa0837670:CDS |
| ATCTCTCATACTGAGGATCT+TGG | 0.441672 | 5_4:-11695323 | None:intergenic |
| CACTACGGCGAGGGAGAACA+TGG | 0.461055 | 5_4:+11700479 | Msa0837670:three_prime_UTR |
| ACATGGAAAGATCAAAGAAA+AGG | 0.464816 | 5_4:+11699325 | Msa0837670:CDS |
| TCTTTCCATGTTGCGAAGCT+CGG | 0.465394 | 5_4:-11699313 | None:intergenic |
| GCAAGCGACTCTTCAGGATC+TGG | 0.473959 | 5_4:+11700198 | Msa0837670:CDS |
| CGAGATTGAGCAACCCTAGC+TGG | 0.476918 | 5_4:-11700797 | None:intergenic |
| TGTAATTATGTATGAACTCA+AGG | 0.479694 | 5_4:-11700659 | None:intergenic |
| CTCACTGTTGATGAGAAAGC+AGG | 0.481077 | 5_4:+11700342 | Msa0837670:three_prime_UTR |
| ATACTGCACTGAAGCTTGAA+TGG | 0.481146 | 5_4:-11700310 | None:intergenic |
| AGATGCCGAACATCAAATTC+TGG | 0.481340 | 5_4:+11698351 | Msa0837670:CDS |
| ACATGATTTCCATGTGAAAA+GGG | 0.483598 | 5_4:+11700921 | Msa0837670:three_prime_UTR |
| CATGGAAAGATCAAAGAAAA+GGG | 0.485019 | 5_4:+11699326 | Msa0837670:CDS |
| CTATACCAGAATTTGATGTT+CGG | 0.489165 | 5_4:-11698356 | None:intergenic |
| GGCTAGACAACAAGCCCAAA+GGG | 0.489632 | 5_4:+11698716 | Msa0837670:CDS |
| TTCTTTCTCGTTATTAGCCA+TGG | 0.491838 | 5_4:-11697282 | None:intergenic |
| GAAGAGTCGCTTGCAGGACT+CGG | 0.492796 | 5_4:-11700189 | None:intergenic |
| GTTATCGATAACAGAAGAAA+GGG | 0.494196 | 5_4:+11697232 | Msa0837670:CDS |
| TGTTATCGATAACAGAAGAA+AGG | 0.505115 | 5_4:+11697231 | Msa0837670:CDS |
| TCAAAAGAAGGACGCAGACT+TGG | 0.505650 | 5_4:+11697060 | Msa0837670:CDS |
| TCTGAGCTTGTGTAAGAGGT+TGG | 0.506430 | 5_4:+11700836 | Msa0837670:three_prime_UTR |
| GAACTATATTGTAGCTCGCT+AGG | 0.508029 | 5_4:-11700529 | None:intergenic |
| AAATCGTCTCCACAGCCAAC+AGG | 0.508271 | 5_4:+11698900 | Msa0837670:CDS |
| TCAACACCTAAAAGAGAAAG+AGG | 0.519235 | 5_4:+11697522 | Msa0837670:CDS |
| GCTAATTCAGGAAGAAATTG+AGG | 0.520210 | 5_4:+11698864 | Msa0837670:intron |
| ATTGTTATTATAGGCCAGCT+AGG | 0.524838 | 5_4:+11700783 | Msa0837670:three_prime_UTR |
| AATTTGATGTTCGGCATCTG+AGG | 0.535891 | 5_4:-11698347 | None:intergenic |
| ATGGCCAGGTCAGCTTGAAT+CGG | 0.541503 | 5_4:+11695285 | Msa0837670:intron |
| TGCACGTATGCAGTTGCTCT+CGG | 0.543333 | 5_4:-11695171 | None:intergenic |
| AAAATGTCAAGCAACAGATA+AGG | 0.544513 | 5_4:+11697467 | Msa0837670:CDS |
| AGACATATACCTGTTGGCTG+TGG | 0.558875 | 5_4:-11698909 | None:intergenic |
| TTGTTATTATAGGCCAGCTA+GGG | 0.560646 | 5_4:+11700784 | Msa0837670:three_prime_UTR |
| GTGGTCTTGATTGAAGAGAC+TGG | 0.561811 | 5_4:-11697971 | None:intergenic |
| TCAAGATCTTCAATCTGCCA+TGG | 0.567592 | 5_4:+11697265 | Msa0837670:CDS |
| AGTTGAATCCAATTTATGCA+AGG | 0.567595 | 5_4:-11698314 | None:intergenic |
| ACCTAAAAGAGAAAGAGGAA+TGG | 0.568959 | 5_4:+11697527 | Msa0837670:CDS |
| ATTTGATGTTCGGCATCTGA+GGG | 0.574149 | 5_4:-11698346 | None:intergenic |
| ACATGCACTTCTTCAAAAGA+AGG | 0.575291 | 5_4:+11697048 | Msa0837670:CDS |
| TATGAGAGATGCTGAACTGT+TGG | 0.575729 | 5_4:+11695336 | Msa0837670:CDS |
| TGCAGATCAGCAGTCTTGAG+AGG | 0.575989 | 5_4:+11696999 | Msa0837670:intron |
| TTAGACATTACATTATGAGC+CGG | 0.576344 | 5_4:+11700754 | Msa0837670:three_prime_UTR |
| ACGAGAAAGAACTTGCAGAA+AGG | 0.576540 | 5_4:+11697294 | Msa0837670:CDS |
| AAAGTCCGAGCTTCGCAACA+TGG | 0.577308 | 5_4:+11699308 | Msa0837670:CDS |
| TACTTAATGGTATAAATGAG+TGG | 0.580956 | 5_4:+11700248 | Msa0837670:exon |
| TTCAAAATGTAGAAGAAACA+TGG | 0.582714 | 5_4:+11697560 | Msa0837670:CDS |
| TCTATCAGCAAGATCATGAA+AGG | 0.585507 | 5_4:-11697889 | None:intergenic |
| CTATAATAACAATACAACTC+CGG | 0.585784 | 5_4:-11700773 | None:intergenic |
| GAAAGATCAAAGAAAAGGGA+AGG | 0.590834 | 5_4:+11699330 | Msa0837670:CDS |
| GCAGATCAGCAGTCTTGAGA+GGG | 0.593969 | 5_4:+11697000 | Msa0837670:intron |
| TGGCTAGACAACAAGCCCAA+AGG | 0.600900 | 5_4:+11698715 | Msa0837670:CDS |
| GAGTCGCTTGCAGGACTCGG+TGG | 0.603972 | 5_4:-11700186 | None:intergenic |
| GCCAGGTCAGCTTGAATCGG+AGG | 0.605175 | 5_4:+11695288 | Msa0837670:intron |
| CAAAATGATAATTATAACAC+AGG | 0.605324 | 5_4:+11698128 | Msa0837670:CDS |
| AACGAATATCACTACGGCGA+GGG | 0.606276 | 5_4:+11700470 | Msa0837670:three_prime_UTR |
| AGTCGCTTGCAGGACTCGGT+GGG | 0.620079 | 5_4:-11700185 | None:intergenic |
| GTTCAGCATCTCTCATACTG+AGG | 0.620292 | 5_4:-11695330 | None:intergenic |
| ACTGTTGGCTGCCAAAGAAG+AGG | 0.621928 | 5_4:+11695351 | Msa0837670:CDS |
| GCTGCTTCAGTTTAGTCCAG+AGG | 0.627685 | 5_4:+11699552 | Msa0837670:CDS |
| TCTTGCTGATAGAATGATTG+AGG | 0.629183 | 5_4:+11697899 | Msa0837670:CDS |
| TGCTGCAGAAGATATGCAGA+AGG | 0.633937 | 5_4:+11697710 | Msa0837670:CDS |
| AGAATCTTGAGAAAAGAGAG+AGG | 0.634025 | 5_4:-11700221 | None:intergenic |
| TGAACAACTCAAAGCTCTTG+AGG | 0.642235 | 5_4:+11697099 | Msa0837670:CDS |
| TTAATGGTATAAATGAGTGG+TGG | 0.642949 | 5_4:+11700251 | Msa0837670:exon |
| GCTTCAGTTTAGTCCAGAGG+AGG | 0.643537 | 5_4:+11699555 | Msa0837670:CDS |
| ATATGCAACGAATATCACTA+CGG | 0.680451 | 5_4:+11700464 | Msa0837670:three_prime_UTR |
| ACAACTCAAAGCTCTTGAGG+AGG | 0.681638 | 5_4:+11697102 | Msa0837670:CDS |
| TAGACAACAAGCCCAAAGGG+AGG | 0.685887 | 5_4:+11698719 | Msa0837670:CDS |
| GAACTTGGCAGTCAGATGCG+AGG | 0.690916 | 5_4:+11697662 | Msa0837670:intron |
| CAACGAATATCACTACGGCG+AGG | 0.699835 | 5_4:+11700469 | Msa0837670:three_prime_UTR |
| ACTACGGCGAGGGAGAACAT+GGG | 0.710412 | 5_4:+11700480 | Msa0837670:three_prime_UTR |
| CTAAAAGAGAAAGAGGAATG+GGG | 0.715540 | 5_4:+11697529 | Msa0837670:CDS |
| CAGCCTGTAAAGAAACGTTG+AGG | 0.720149 | 5_4:+11700438 | Msa0837670:three_prime_UTR |
| AAAAGAAAGGGAAAGCTGGG+AGG | 0.732734 | 5_4:+11695112 | Msa0837670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTACTATTTAAATTTAA+TGG | + | chr5_4:11696155-11696174 | Msa0837670:intron | 10.0% |
| !! | AAGTACTATTTAAATTTAAT+GGG | + | chr5_4:11696156-11696175 | Msa0837670:intron | 10.0% |
| !! | AGATTAATAAAAAAAACATA+CGG | - | chr5_4:11697997-11698016 | None:intergenic | 10.0% |
| !! | AAGAATTAAAAAAAAAAAAG+TGG | - | chr5_4:11698542-11698561 | None:intergenic | 10.0% |
| !! | TATTATATTACATAGTATTA+CGG | - | chr5_4:11698842-11698861 | None:intergenic | 10.0% |
| !! | GTAAATTAGAAAATATATAT+TGG | + | chr5_4:11700374-11700393 | Msa0837670:three_prime_UTR | 10.0% |
| !!! | TTAATATGTACTTCTTATTT+TGG | - | chr5_4:11695210-11695229 | None:intergenic | 15.0% |
| !!! | AAAATGGATTTTTAAGTTTT+TGG | + | chr5_4:11695260-11695279 | Msa0837670:intron | 15.0% |
| !! | ATTGAGAAAATAAATAAACA+AGG | + | chr5_4:11695900-11695919 | Msa0837670:intron | 15.0% |
| !!! | TTTTATTCCAAATTCATATA+AGG | - | chr5_4:11697627-11697646 | None:intergenic | 15.0% |
| !! | AATCTAATTTAAATTGAACT+TGG | + | chr5_4:11697647-11697666 | Msa0837670:intron | 15.0% |
| !! | GATTAATAAAAAAAACATAC+GGG | - | chr5_4:11697996-11698015 | None:intergenic | 15.0% |
| !! | AATTAAAAAAAAAAAAGTGG+AGG | - | chr5_4:11698539-11698558 | None:intergenic | 15.0% |
| !! | AGATAAATCTTAATAAATTC+TGG | - | chr5_4:11698938-11698957 | None:intergenic | 15.0% |
| !!! | TCATTTATTTATTTTTCAAG+TGG | - | chr5_4:11699179-11699198 | None:intergenic | 15.0% |
| !! | TTCTCATATTTACTTCAAAA+TGG | + | chr5_4:11695244-11695263 | Msa0837670:intron | 20.0% |
| !!! | GATTTTTAAGTTTTTGGTAA+TGG | + | chr5_4:11695266-11695285 | Msa0837670:intron | 20.0% |
| !! | AAAGATAAGACAAAAACTAT+CGG | - | chr5_4:11695469-11695488 | None:intergenic | 20.0% |
| !! | TACTAAATACATCTTAGAAA+CGG | - | chr5_4:11696671-11696690 | None:intergenic | 20.0% |
| !! | ATGTTTATCATAATCTTAAG+AGG | + | chr5_4:11697137-11697156 | Msa0837670:intron | 20.0% |
| !! | ATAACTCATTGAATCTTAAT+GGG | + | chr5_4:11697331-11697350 | Msa0837670:intron | 20.0% |
| !! | TCTCAATATCATAAAAATCA+AGG | + | chr5_4:11698021-11698040 | Msa0837670:intron | 20.0% |
| !!! | GTTATAATTATCATTTTGAC+CGG | - | chr5_4:11698126-11698145 | None:intergenic | 20.0% |
| !! | CAAAATGATAATTATAACAC+AGG | + | chr5_4:11698128-11698147 | Msa0837670:CDS | 20.0% |
| !!! | GTATTGATTCAATTATAGTA+TGG | + | chr5_4:11698150-11698169 | Msa0837670:intron | 20.0% |
| !! | AAATGTATTAAAGAGATATG+TGG | - | chr5_4:11698412-11698431 | None:intergenic | 20.0% |
| !! | AAAATATATTGAATTGATGC+GGG | - | chr5_4:11698644-11698663 | None:intergenic | 20.0% |
| !! | CAAAATATATTGAATTGATG+CGG | - | chr5_4:11698645-11698664 | None:intergenic | 20.0% |
| !! | TAATATAATACTGCTAATTC+AGG | + | chr5_4:11698852-11698871 | Msa0837670:intron | 20.0% |
| !! | ATAAATAAATGAGCATTCTT+TGG | + | chr5_4:11699187-11699206 | Msa0837670:intron | 20.0% |
| !! | TATTTGGAAATTCATATTTG+TGG | - | chr5_4:11699265-11699284 | None:intergenic | 20.0% |
| !!! | GATAGAAATTTTCTTTGATT+AGG | + | chr5_4:11699496-11699515 | Msa0837670:intron | 20.0% |
| !! | AAACAGGAAAGAAAAATTAT+GGG | + | chr5_4:11699619-11699638 | Msa0837670:intron | 20.0% |
| !! | ATCTCCAAAATTAAATCTAA+GGG | + | chr5_4:11699695-11699714 | Msa0837670:intron | 20.0% |
| !! | TTATTATATCAGGATAATCA+TGG | - | chr5_4:11700013-11700032 | None:intergenic | 20.0% |
| !!! | ACGTCATTTTTTATTATATC+AGG | - | chr5_4:11700023-11700042 | None:intergenic | 20.0% |
| ! | AATATGAGAAAGCTTATAGA+AGG | - | chr5_4:11695234-11695253 | None:intergenic | 25.0% |
| !! | GATAGTTTTTGTCTTATCTT+TGG | + | chr5_4:11695468-11695487 | Msa0837670:intron | 25.0% |
| !! | ATGCACTTTTATGTTAATGT+AGG | + | chr5_4:11695574-11695593 | Msa0837670:intron | 25.0% |
| !!! | TTTTTTACGTGTTCGATAAA+AGG | + | chr5_4:11695787-11695806 | Msa0837670:intron | 25.0% |
| ! | TTTATCTTGAAGGTGAAAAT+TGG | + | chr5_4:11695982-11696001 | Msa0837670:intron | 25.0% |
| ! | TTAAACTAGATCCTTCTTAA+TGG | - | chr5_4:11696489-11696508 | None:intergenic | 25.0% |
| !! | TAAGAAGGATCTAGTTTAAA+TGG | + | chr5_4:11696490-11696509 | Msa0837670:intron | 25.0% |
| ! | ACTAAATACATCTTAGAAAC+GGG | - | chr5_4:11696670-11696689 | None:intergenic | 25.0% |
| ! | TATGAAGTGATAAAAACATC+AGG | - | chr5_4:11696818-11696837 | None:intergenic | 25.0% |
| ! | AATACGCTTCATATAATTCA+CGG | + | chr5_4:11696851-11696870 | Msa0837670:intron | 25.0% |
| ! | GATAACTCATTGAATCTTAA+TGG | + | chr5_4:11697330-11697349 | Msa0837670:intron | 25.0% |
| !! | ATGTTTCTTCTACATTTTGA+AGG | - | chr5_4:11697561-11697580 | None:intergenic | 25.0% |
| ! | TTCAAAATGTAGAAGAAACA+TGG | + | chr5_4:11697560-11697579 | Msa0837670:CDS | 25.0% |
| ! | GTTCATACCTTATATGAATT+TGG | + | chr5_4:11697617-11697636 | Msa0837670:intron | 25.0% |
| ! | ACAGAGATGTAAAAAATTGA+AGG | + | chr5_4:11697749-11697768 | Msa0837670:CDS | 25.0% |
| !! | TTTTTGTCCATCTTTTTTCT+TGG | + | chr5_4:11697826-11697845 | Msa0837670:intron | 25.0% |
| !! | TTTTGTCCATCTTTTTTCTT+GGG | + | chr5_4:11697827-11697846 | Msa0837670:intron | 25.0% |
| !! | TAACTAAATCTATAACTTGC+AGG | + | chr5_4:11697854-11697873 | Msa0837670:intron | 25.0% |
| !!! | CTTATTTTCATCTAAAAGTC+TGG | - | chr5_4:11697943-11697962 | None:intergenic | 25.0% |
| ! | TAATAAAAAAAACATACGGG+TGG | - | chr5_4:11697993-11698012 | None:intergenic | 25.0% |
| ! | AGAATAAAAATGCAAGATCA+CGG | - | chr5_4:11698070-11698089 | None:intergenic | 25.0% |
| !! | ATCTTGCATTTTTATTCTAC+TGG | + | chr5_4:11698072-11698091 | Msa0837670:intron | 25.0% |
| !! | TTACTTATAGTTTTTCCTTG+AGG | + | chr5_4:11698197-11698216 | Msa0837670:intron | 25.0% |
| ! | TCATAAAGTCTATCATTTAG+CGG | + | chr5_4:11698254-11698273 | Msa0837670:intron | 25.0% |
| ! | GAAAGTTGTTTATAGCAATT+TGG | + | chr5_4:11698460-11698479 | Msa0837670:intron | 25.0% |
| !!! | TTTTTAATTCTTTTGGCCTT+CGG | + | chr5_4:11698550-11698569 | Msa0837670:intron | 25.0% |
| !! | TTTGTCACAATTTCAGATTT+TGG | + | chr5_4:11698695-11698714 | Msa0837670:intron | 25.0% |
| ! | GTTCGTTTCATTTCTTTAAA+TGG | - | chr5_4:11698967-11698986 | None:intergenic | 25.0% |
| !!! | GATTAAAAGACTGATTTTCT+AGG | + | chr5_4:11699016-11699035 | Msa0837670:intron | 25.0% |
| ! | AGAAAATTGAAGTACAAACA+AGG | - | chr5_4:11699112-11699131 | None:intergenic | 25.0% |
| !! | TTGTACTTCAATTTTCTGAT+AGG | + | chr5_4:11699115-11699134 | Msa0837670:intron | 25.0% |
| ! | ATATTAGCTACAAAATGCAA+AGG | - | chr5_4:11699458-11699477 | None:intergenic | 25.0% |
| ! | GAAACAGGAAAGAAAAATTA+TGG | + | chr5_4:11699618-11699637 | Msa0837670:intron | 25.0% |
| ! | AACAGGAAAGAAAAATTATG+GGG | + | chr5_4:11699620-11699639 | Msa0837670:intron | 25.0% |
| ! | CATCTCCAAAATTAAATCTA+AGG | + | chr5_4:11699694-11699713 | Msa0837670:intron | 25.0% |
| !! | GTCTGATACTAAATATTTTC+CGG | + | chr5_4:11699766-11699785 | Msa0837670:intron | 25.0% |
| ! | TGTGCTCAAGTATATATAAT+TGG | + | chr5_4:11699920-11699939 | Msa0837670:intron | 25.0% |
| ! | AAAACTTCAGATTCTTCTAA+AGG | - | chr5_4:11700046-11700065 | None:intergenic | 25.0% |
| ! | CAAGATTCTCATTTACTTAA+TGG | + | chr5_4:11700235-11700254 | Msa0837670:CDS | 25.0% |
| ! | TACTTAATGGTATAAATGAG+TGG | + | chr5_4:11700248-11700267 | Msa0837670:exon | 25.0% |
| ! | TGTAATTATGTATGAACTCA+AGG | - | chr5_4:11700662-11700681 | None:intergenic | 25.0% |
| ! | CTATAATAACAATACAACTC+CGG | - | chr5_4:11700776-11700795 | None:intergenic | 25.0% |
| ACTGTTAAACACTTATTGCT+TGG | + | chr5_4:11695033-11695052 | Msa0837670:intron | 30.0% | |
| CTTTAAGTAAAGCAACCATA+TGG | - | chr5_4:11695075-11695094 | None:intergenic | 30.0% | |
| ATTAGTTAGAACCTCTTCTT+TGG | - | chr5_4:11695365-11695384 | None:intergenic | 30.0% | |
| !!! | TTTTGTCTTATCTTTGGAGT+TGG | + | chr5_4:11695474-11695493 | Msa0837670:intron | 30.0% |
| !! | TTTGTCTTATCTTTGGAGTT+GGG | + | chr5_4:11695475-11695494 | Msa0837670:intron | 30.0% |
| AATGTAGTAAATAGAGTGCA+GGG | - | chr5_4:11695640-11695659 | None:intergenic | 30.0% | |
| AAATGTAGTAAATAGAGTGC+AGG | - | chr5_4:11695641-11695660 | None:intergenic | 30.0% | |
| ACAGGATATTCTCTTAACTT+GGG | - | chr5_4:11695711-11695730 | None:intergenic | 30.0% | |
| AAGTTAAGAGAATATCCTGT+CGG | + | chr5_4:11695711-11695730 | Msa0837670:intron | 30.0% | |
| CAATTCTCCAAGATATATTG+TGG | - | chr5_4:11695884-11695903 | None:intergenic | 30.0% | |
| TAATAAGCAATAGAGTTAGC+TGG | + | chr5_4:11695947-11695966 | Msa0837670:intron | 30.0% | |
| TCACATGGTTTAAGTATCTT+GGG | + | chr5_4:11696027-11696046 | Msa0837670:intron | 30.0% | |
| GTAAATCAAAGGATTCATGT+TGG | + | chr5_4:11696084-11696103 | Msa0837670:intron | 30.0% | |
| TTCATGTTGGATGAATGTAA+TGG | + | chr5_4:11696097-11696116 | Msa0837670:intron | 30.0% | |
| CTAATAACAAAAGATGCTCA+AGG | + | chr5_4:11696248-11696267 | Msa0837670:intron | 30.0% | |
| TATAGGACAAACCATTAAGA+AGG | + | chr5_4:11696475-11696494 | Msa0837670:intron | 30.0% | |
| ATGACATTATTGCATTTGCA+TGG | + | chr5_4:11696538-11696557 | Msa0837670:intron | 30.0% | |
| ATTATTGCATTTGCATGGTA+TGG | + | chr5_4:11696543-11696562 | Msa0837670:intron | 30.0% | |
| !! | ATTGTAGTTGTTGACTTTGT+CGG | + | chr5_4:11696614-11696633 | Msa0837670:intron | 30.0% |
| CTAAATACATCTTAGAAACG+GGG | - | chr5_4:11696669-11696688 | None:intergenic | 30.0% | |
| TATTGTAACCTATAACCTAC+TGG | - | chr5_4:11696776-11696795 | None:intergenic | 30.0% | |
| GTAGGTTATAGGTTACAATA+CGG | + | chr5_4:11696776-11696795 | Msa0837670:intron | 30.0% | |
| TAGACAATAGAGAATGTGAT+TGG | - | chr5_4:11697192-11697211 | None:intergenic | 30.0% | |
| TGTTATCGATAACAGAAGAA+AGG | + | chr5_4:11697231-11697250 | Msa0837670:CDS | 30.0% | |
| GTTATCGATAACAGAAGAAA+GGG | + | chr5_4:11697232-11697251 | Msa0837670:CDS | 30.0% | |
| AAAATGTCAAGCAACAGATA+AGG | + | chr5_4:11697467-11697486 | Msa0837670:CDS | 30.0% | |
| TAAATTGTTAAACTCGTGCT+TGG | + | chr5_4:11697779-11697798 | Msa0837670:intron | 30.0% | |
| ATGGACAAAAACACTAATAG+AGG | - | chr5_4:11697817-11697836 | None:intergenic | 30.0% | |
| !!! | TTTGTCCATCTTTTTTCTTG+GGG | + | chr5_4:11697828-11697847 | Msa0837670:intron | 30.0% |
| AGTTGAATCCAATTTATGCA+AGG | - | chr5_4:11698317-11698336 | None:intergenic | 30.0% | |
| CTATACCAGAATTTGATGTT+CGG | - | chr5_4:11698359-11698378 | None:intergenic | 30.0% | |
| AATTGAATAGAAAGCTGCAA+TGG | - | chr5_4:11698389-11698408 | None:intergenic | 30.0% | |
| GCTATAAACAACTTTCTAAC+TGG | - | chr5_4:11698456-11698475 | None:intergenic | 30.0% | |
| !! | TTTTAATTCTTTTGGCCTTC+GGG | + | chr5_4:11698551-11698570 | Msa0837670:intron | 30.0% |
| ACATAGTATTACGGAAGAAA+GGG | - | chr5_4:11698833-11698852 | None:intergenic | 30.0% | |
| TACATAGTATTACGGAAGAA+AGG | - | chr5_4:11698834-11698853 | None:intergenic | 30.0% | |
| TAAATGAGCATTCTTTGGAT+TGG | + | chr5_4:11699192-11699211 | Msa0837670:intron | 30.0% | |
| GAAATTCATATTTGTGGTGT+GGG | - | chr5_4:11699259-11699278 | None:intergenic | 30.0% | |
| TTTCCAAATATTATGACTGC+AGG | + | chr5_4:11699275-11699294 | Msa0837670:intron | 30.0% | |
| ACATGGAAAGATCAAAGAAA+AGG | + | chr5_4:11699325-11699344 | Msa0837670:CDS | 30.0% | |
| CATGGAAAGATCAAAGAAAA+GGG | + | chr5_4:11699326-11699345 | Msa0837670:CDS | 30.0% | |
| AAAGGAGATAAGGACAAAAT+GGG | - | chr5_4:11699440-11699459 | None:intergenic | 30.0% | |
| TACAAAATGCAAAGGAGATA+AGG | - | chr5_4:11699450-11699469 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGATTAGGTGAAG+TGG | + | chr5_4:11699504-11699523 | Msa0837670:intron | 30.0% |
| ! | AAGTATTGCTACCAGTTATT+GGG | + | chr5_4:11699527-11699546 | Msa0837670:CDS | 30.0% |
| ACAGGAAAGAAAAATTATGG+GGG | + | chr5_4:11699621-11699640 | Msa0837670:intron | 30.0% | |
| ATAAGTTGTGCAAGTTAAAG+AGG | + | chr5_4:11699649-11699668 | Msa0837670:intron | 30.0% | |
| !! | GAAGCCCTTAGATTTAATTT+TGG | - | chr5_4:11699702-11699721 | None:intergenic | 30.0% |
| ! | TAAATATTTTCCGGTGTAGT+AGG | + | chr5_4:11699775-11699794 | Msa0837670:intron | 30.0% |
| TTAATGGTATAAATGAGTGG+TGG | + | chr5_4:11700251-11700270 | Msa0837670:exon | 30.0% | |
| AATTGTTCAATGCAAGAGTT+TGG | + | chr5_4:11700408-11700427 | Msa0837670:three_prime_UTR | 30.0% | |
| ATATGCAACGAATATCACTA+CGG | + | chr5_4:11700464-11700483 | Msa0837670:three_prime_UTR | 30.0% | |
| !! | TTCTGCTTGTTATTTGATTC+TGG | + | chr5_4:11700506-11700525 | Msa0837670:three_prime_UTR | 30.0% |
| AAGGATAATTCTCATTCCTT+TGG | - | chr5_4:11700643-11700662 | None:intergenic | 30.0% | |
| TTAGACATTACATTATGAGC+CGG | + | chr5_4:11700754-11700773 | Msa0837670:three_prime_UTR | 30.0% | |
| ! | CGGAGTTGTATTGTTATTAT+AGG | + | chr5_4:11700774-11700793 | Msa0837670:three_prime_UTR | 30.0% |
| ACATGATTTCCATGTGAAAA+GGG | + | chr5_4:11700921-11700940 | Msa0837670:three_prime_UTR | 30.0% | |
| ! | TAAATCTAACCCTTTTCACA+TGG | - | chr5_4:11700933-11700952 | None:intergenic | 30.0% |
| ! | AAGTTCGTACCTTTTCCATA+TGG | + | chr5_4:11695057-11695076 | Msa0837670:intron | 35.0% |
| GTAAAGCAACCATATGGAAA+AGG | - | chr5_4:11695069-11695088 | None:intergenic | 35.0% | |
| ! | GGTTGCTTTACTTAAAGCTT+TGG | + | chr5_4:11695078-11695097 | Msa0837670:intron | 35.0% |
| GTGTGTTCAGGAAAAAGAAA+GGG | + | chr5_4:11695100-11695119 | Msa0837670:intron | 35.0% | |
| !!! | TTAAGTTTTTGGTAATGGCC+AGG | + | chr5_4:11695271-11695290 | Msa0837670:intron | 35.0% |
| ! | TTTGGAGTTGGGTAAGAATT+AGG | + | chr5_4:11695486-11695505 | Msa0837670:intron | 35.0% |
| TTGGAGTTGGGTAAGAATTA+GGG | + | chr5_4:11695487-11695506 | Msa0837670:intron | 35.0% | |
| ! | CATCACTAAAGTTTTTCCCT+GGG | - | chr5_4:11695540-11695559 | None:intergenic | 35.0% |
| ! | ACATCACTAAAGTTTTTCCC+TGG | - | chr5_4:11695541-11695560 | None:intergenic | 35.0% |
| TTAATGTAGGACTCCATTGA+AGG | + | chr5_4:11695587-11695606 | Msa0837670:intron | 35.0% | |
| GACAGGATATTCTCTTAACT+TGG | - | chr5_4:11695712-11695731 | None:intergenic | 35.0% | |
| ! | GAGCGTCAATTTTATCTTGA+AGG | + | chr5_4:11695972-11695991 | Msa0837670:intron | 35.0% |
| GTCATTTACAACAAGTCACA+TGG | + | chr5_4:11696012-11696031 | Msa0837670:intron | 35.0% | |
| GTCACATGGTTTAAGTATCT+TGG | + | chr5_4:11696026-11696045 | Msa0837670:intron | 35.0% | |
| ! | GTAGAGAGTGTGTAAATCAA+AGG | + | chr5_4:11696073-11696092 | Msa0837670:intron | 35.0% |
| AGAATGTTACGATGAATGAG+TGG | + | chr5_4:11696282-11696301 | Msa0837670:intron | 35.0% | |
| ! | TCTGCAATATTTTCCACGAT+AGG | - | chr5_4:11696331-11696350 | None:intergenic | 35.0% |
| TCAAGGGTAGTCTAATAGTA+AGG | + | chr5_4:11696422-11696441 | Msa0837670:intron | 35.0% | |
| ATAAAAACTCGCACGAGTAT+AGG | + | chr5_4:11696458-11696477 | Msa0837670:intron | 35.0% | |
| AATCAACAGCCATTCAAGAA+CGG | - | chr5_4:11696899-11696918 | None:intergenic | 35.0% | |
| TCTAATCTTCACGTGTTATG+TGG | - | chr5_4:11696932-11696951 | None:intergenic | 35.0% | |
| ! | GAGGGAATTTTCTTCATACA+AGG | + | chr5_4:11697018-11697037 | Msa0837670:CDS | 35.0% |
| ACATGCACTTCTTCAAAAGA+AGG | + | chr5_4:11697048-11697067 | Msa0837670:CDS | 35.0% | |
| TCACATTCTCTATTGTCTAC+AGG | + | chr5_4:11697193-11697212 | Msa0837670:intron | 35.0% | |
| TTCTTTCTCGTTATTAGCCA+TGG | - | chr5_4:11697285-11697304 | None:intergenic | 35.0% | |
| ATCCGATTAATGCTATGGTT+TGG | + | chr5_4:11697361-11697380 | Msa0837670:intron | 35.0% | |
| TCCGATTAATGCTATGGTTT+GGG | + | chr5_4:11697362-11697381 | Msa0837670:intron | 35.0% | |
| !! | CTGTTGCTTGACATTTTCAA+GGG | - | chr5_4:11697464-11697483 | None:intergenic | 35.0% |
| !! | TCTGTTGCTTGACATTTTCA+AGG | - | chr5_4:11697465-11697484 | None:intergenic | 35.0% |
| TCAACACCTAAAAGAGAAAG+AGG | + | chr5_4:11697522-11697541 | Msa0837670:CDS | 35.0% | |
| ACCTAAAAGAGAAAGAGGAA+TGG | + | chr5_4:11697527-11697546 | Msa0837670:CDS | 35.0% | |
| CCTAAAAGAGAAAGAGGAAT+GGG | + | chr5_4:11697528-11697547 | Msa0837670:CDS | 35.0% | |
| CTAAAAGAGAAAGAGGAATG+GGG | + | chr5_4:11697529-11697548 | Msa0837670:CDS | 35.0% | |
| AAGTAATACACGCTACTAGT+TGG | + | chr5_4:11697585-11697604 | Msa0837670:intron | 35.0% | |
| AGAAGATATGCAGAAGGAAT+TGG | + | chr5_4:11697716-11697735 | Msa0837670:CDS | 35.0% | |
| ACAAAAACACTAATAGAGGC+AGG | - | chr5_4:11697813-11697832 | None:intergenic | 35.0% | |
| TAGTACCCCAAGAAAAAAGA+TGG | - | chr5_4:11697836-11697855 | None:intergenic | 35.0% | |
| TCTATCAGCAAGATCATGAA+AGG | - | chr5_4:11697892-11697911 | None:intergenic | 35.0% | |
| TCTTGCTGATAGAATGATTG+AGG | + | chr5_4:11697899-11697918 | Msa0837670:CDS | 35.0% | |
| GATATCATTTGACAGCATTG+CGG | - | chr5_4:11698100-11698119 | None:intergenic | 35.0% | |
| CTATAAGTAAACACTGCAAG+TGG | - | chr5_4:11698187-11698206 | None:intergenic | 35.0% | |
| ACACTAGCAGCAATATGAAT+AGG | - | chr5_4:11698232-11698251 | None:intergenic | 35.0% | |
| ATGTACAGCCTTGCATAAAT+TGG | + | chr5_4:11698306-11698325 | Msa0837670:intron | 35.0% | |
| TTGGTGAACTATGAGAAAGA+TGG | + | chr5_4:11698479-11698498 | Msa0837670:intron | 35.0% | |
| !! | TTTAATTCTTTTGGCCTTCG+GGG | + | chr5_4:11698552-11698571 | Msa0837670:intron | 35.0% |
| TATATTGAATTGATGCGGGA+GGG | - | chr5_4:11698640-11698659 | None:intergenic | 35.0% | |
| ATATATTGAATTGATGCGGG+AGG | - | chr5_4:11698641-11698660 | None:intergenic | 35.0% | |
| AAACATCAAAACAGAGGTTC+AGG | - | chr5_4:11698678-11698697 | None:intergenic | 35.0% | |
| TGTGACAAACATCAAAACAG+AGG | - | chr5_4:11698684-11698703 | None:intergenic | 35.0% | |
| CATAGTATTACGGAAGAAAG+GGG | - | chr5_4:11698832-11698851 | None:intergenic | 35.0% | |
| GCTAATTCAGGAAGAAATTG+AGG | + | chr5_4:11698864-11698883 | Msa0837670:intron | 35.0% | |
| ATGAAACGAACAGATCTACA+AGG | + | chr5_4:11698976-11698995 | Msa0837670:intron | 35.0% | |
| GGAAATTCATATTTGTGGTG+TGG | - | chr5_4:11699260-11699279 | None:intergenic | 35.0% | |
| GAAAGATCAAAGAAAAGGGA+AGG | + | chr5_4:11699330-11699349 | Msa0837670:CDS | 35.0% | |
| ATCTTAAAGCTTCTTGAGAC+AGG | + | chr5_4:11699381-11699400 | Msa0837670:CDS | 35.0% | |
| AAGGAGATAAGGACAAAATG+GGG | - | chr5_4:11699439-11699458 | None:intergenic | 35.0% | |
| CAAAGGAGATAAGGACAAAA+TGG | - | chr5_4:11699441-11699460 | None:intergenic | 35.0% | |
| !! | GAAGTATTGCTACCAGTTAT+TGG | + | chr5_4:11699526-11699545 | Msa0837670:CDS | 35.0% |
| GATGAAAAAATTACCTCCTC+TGG | - | chr5_4:11699571-11699590 | None:intergenic | 35.0% | |
| GAAAGAAAAATTATGGGGGA+AGG | + | chr5_4:11699625-11699644 | Msa0837670:intron | 35.0% | |
| AGATGTAACAGCATTGCATA+AGG | - | chr5_4:11699679-11699698 | None:intergenic | 35.0% | |
| AGAATCTTGAGAAAAGAGAG+AGG | - | chr5_4:11700224-11700243 | None:intergenic | 35.0% | |
| TATCCTCAACGTTTCTTTAC+AGG | - | chr5_4:11700444-11700463 | None:intergenic | 35.0% | |
| ! | TTTTCACACGACAATTCCAA+AGG | + | chr5_4:11700624-11700643 | Msa0837670:three_prime_UTR | 35.0% |
| CATGAAGATCTGCTTCTTAT+TGG | + | chr5_4:11700727-11700746 | Msa0837670:three_prime_UTR | 35.0% | |
| ! | ATTGTTATTATAGGCCAGCT+AGG | + | chr5_4:11700783-11700802 | Msa0837670:three_prime_UTR | 35.0% |
| ! | TTGTTATTATAGGCCAGCTA+GGG | + | chr5_4:11700784-11700803 | Msa0837670:three_prime_UTR | 35.0% |
| CACATGATTTCCATGTGAAA+AGG | + | chr5_4:11700920-11700939 | Msa0837670:three_prime_UTR | 35.0% | |
| ! | CTTAAAGCTTTGGTGTGTTC+AGG | + | chr5_4:11695088-11695107 | Msa0837670:intron | 40.0% |
| GGTGTGTTCAGGAAAAAGAA+AGG | + | chr5_4:11695099-11695118 | Msa0837670:intron | 40.0% | |
| AGGAAAAAGAAAGGGAAAGC+TGG | + | chr5_4:11695108-11695127 | Msa0837670:intron | 40.0% | |
| GGAAAAAGAAAGGGAAAGCT+GGG | + | chr5_4:11695109-11695128 | Msa0837670:intron | 40.0% | |
| ATCTCTCATACTGAGGATCT+TGG | - | chr5_4:11695326-11695345 | None:intergenic | 40.0% | |
| TATGAGAGATGCTGAACTGT+TGG | + | chr5_4:11695336-11695355 | Msa0837670:CDS | 40.0% | |
| TAGTAAATAGAGTGCAGGGT+TGG | - | chr5_4:11695636-11695655 | None:intergenic | 40.0% | |
| !! | ACTAACGCTGTTAGCTTTAC+CGG | - | chr5_4:11695752-11695771 | None:intergenic | 40.0% |
| TAGTGACTCCAAACTCAAGA+GGG | - | chr5_4:11695843-11695862 | None:intergenic | 40.0% | |
| TCCAAGATATATTGTGGCAC+TGG | - | chr5_4:11695878-11695897 | None:intergenic | 40.0% | |
| TAAGCAATAGAGTTAGCTGG+AGG | + | chr5_4:11695950-11695969 | Msa0837670:intron | 40.0% | |
| GGATCAATGTGCAAATAGCA+GGG | + | chr5_4:11696048-11696067 | Msa0837670:intron | 40.0% | |
| !! | TGAATGTAATGGACTGCATC+AGG | + | chr5_4:11696108-11696127 | Msa0837670:intron | 40.0% |
| TGCAACTGAACGATGAAAGA+TGG | + | chr5_4:11696217-11696236 | Msa0837670:intron | 40.0% | |
| ATAGGTCAGCGTATCTTGTT+TGG | - | chr5_4:11696313-11696332 | None:intergenic | 40.0% | |
| GAATCTCGCCTAAGTAGTTT+AGG | + | chr5_4:11696349-11696368 | Msa0837670:intron | 40.0% | |
| CACACATGCCTAAACTACTT+AGG | - | chr5_4:11696360-11696379 | None:intergenic | 40.0% | |
| CTAAGTAGTTTAGGCATGTG+TGG | + | chr5_4:11696358-11696377 | Msa0837670:intron | 40.0% | |
| ATGCTGTAGATGACCTAGTA+AGG | + | chr5_4:11696385-11696404 | Msa0837670:intron | 40.0% | |
| GTGAATGCACTTTCCTTACT+AGG | - | chr5_4:11696401-11696420 | None:intergenic | 40.0% | |
| ! | AGGAAAGTGCATTCACATCA+AGG | + | chr5_4:11696405-11696424 | Msa0837670:intron | 40.0% |
| ! | GGAAAGTGCATTCACATCAA+GGG | + | chr5_4:11696406-11696425 | Msa0837670:intron | 40.0% |
| !! | TGTTGACTTTGTCGGTCATA+TGG | + | chr5_4:11696622-11696641 | Msa0837670:intron | 40.0% |
| ATATGGCATTGCAGTTGTGT+GGG | + | chr5_4:11696639-11696658 | Msa0837670:intron | 40.0% | |
| AAGACGAACCAGTAGGTTAT+AGG | + | chr5_4:11696765-11696784 | Msa0837670:intron | 40.0% | |
| ATCAACAGCCATTCAAGAAC+GGG | - | chr5_4:11696898-11696917 | None:intergenic | 40.0% | |
| TGAACAACTCAAAGCTCTTG+AGG | + | chr5_4:11697099-11697118 | Msa0837670:CDS | 40.0% | |
| CATTCTCTATTGTCTACAGG+AGG | + | chr5_4:11697196-11697215 | Msa0837670:intron | 40.0% | |
| TCAAGATCTTCAATCTGCCA+TGG | + | chr5_4:11697265-11697284 | Msa0837670:CDS | 40.0% | |
| ACGAGAAAGAACTTGCAGAA+AGG | + | chr5_4:11697294-11697313 | Msa0837670:CDS | 40.0% | |
| TGTGCATCCGATTAATGCTA+TGG | + | chr5_4:11697356-11697375 | Msa0837670:intron | 40.0% | |
| CCCCAAACCATAGCATTAAT+CGG | - | chr5_4:11697366-11697385 | None:intergenic | 40.0% | |
| CCGATTAATGCTATGGTTTG+GGG | + | chr5_4:11697363-11697382 | Msa0837670:intron | 40.0% | |
| ! | CCCATTCCTCTTTCTCTTTT+AGG | - | chr5_4:11697531-11697550 | None:intergenic | 40.0% |
| GCTGTCAAATGATATCAGTC+CGG | + | chr5_4:11698104-11698123 | Msa0837670:intron | 40.0% | |
| AATAGGTATGCATCACCTCA+AGG | - | chr5_4:11698215-11698234 | None:intergenic | 40.0% | |
| ATTTGATGTTCGGCATCTGA+GGG | - | chr5_4:11698349-11698368 | None:intergenic | 40.0% | |
| AATTTGATGTTCGGCATCTG+AGG | - | chr5_4:11698350-11698369 | None:intergenic | 40.0% | |
| AGATGCCGAACATCAAATTC+TGG | + | chr5_4:11698351-11698370 | Msa0837670:CDS | 40.0% | |
| !! | TTAATTCTTTTGGCCTTCGG+GGG | + | chr5_4:11698553-11698572 | Msa0837670:intron | 40.0% |
| ATCAAAACAGAGGTTCAGGA+TGG | - | chr5_4:11698674-11698693 | None:intergenic | 40.0% | |
| CCTCCTGCAGTCATAATATT+TGG | - | chr5_4:11699281-11699300 | None:intergenic | 40.0% | |
| CCAAATATTATGACTGCAGG+AGG | + | chr5_4:11699278-11699297 | Msa0837670:intron | 40.0% | |
| TCATCATCTACCTTGCATGT+AGG | + | chr5_4:11699586-11699605 | Msa0837670:intron | 40.0% | |
| ATACTGCACTGAAGCTTGAA+TGG | - | chr5_4:11700313-11700332 | None:intergenic | 40.0% | |
| GAACTATATTGTAGCTCGCT+AGG | - | chr5_4:11700532-11700551 | None:intergenic | 40.0% | |
| CTTATCTGAGCTTGTGTAAG+AGG | + | chr5_4:11700832-11700851 | Msa0837670:three_prime_UTR | 40.0% | |
| AAAAGAAAGGGAAAGCTGGG+AGG | + | chr5_4:11695112-11695131 | Msa0837670:CDS | 45.0% | |
| GTTCAGCATCTCTCATACTG+AGG | - | chr5_4:11695333-11695352 | None:intergenic | 45.0% | |
| TGTCAGAGAAATACACTCCC+AGG | + | chr5_4:11695520-11695539 | Msa0837670:intron | 45.0% | |
| GTCAGAGAAATACACTCCCA+GGG | + | chr5_4:11695521-11695540 | Msa0837670:intron | 45.0% | |
| TAAATAGAGTGCAGGGTTGG+AGG | - | chr5_4:11695633-11695652 | None:intergenic | 45.0% | |
| !! | CCTGTCGGTGTTAGTTCAAT+CGG | + | chr5_4:11695726-11695745 | Msa0837670:intron | 45.0% |
| AGTGACTCCAAACTCAAGAG+GGG | - | chr5_4:11695842-11695861 | None:intergenic | 45.0% | |
| GTAGTGACTCCAAACTCAAG+AGG | - | chr5_4:11695844-11695863 | None:intergenic | 45.0% | |
| GCCAGTGCCACAATATATCT+TGG | + | chr5_4:11695874-11695893 | Msa0837670:intron | 45.0% | |
| AGGAGCTAGAGATATGAACG+CGG | + | chr5_4:11695920-11695939 | Msa0837670:intron | 45.0% | |
| GGGATCAATGTGCAAATAGC+AGG | + | chr5_4:11696047-11696066 | Msa0837670:intron | 45.0% | |
| CACTTTCCATGACGTAAGAC+TGG | - | chr5_4:11696586-11696605 | None:intergenic | 45.0% | |
| CATATGGCATTGCAGTTGTG+TGG | + | chr5_4:11696638-11696657 | Msa0837670:intron | 45.0% | |
| !! | AACCTACTGGTTCGTCTTCT+AGG | - | chr5_4:11696763-11696782 | None:intergenic | 45.0% |
| ACTCAAACCCCGTTCTTGAA+TGG | + | chr5_4:11696887-11696906 | Msa0837670:intron | 45.0% | |
| TCAACAGCCATTCAAGAACG+GGG | - | chr5_4:11696897-11696916 | None:intergenic | 45.0% | |
| !! | ATGGCTGTTGATTTGACCCT+TGG | + | chr5_4:11696906-11696925 | Msa0837670:intron | 45.0% |
| TTCACGTGTTATGTGGCCAA+GGG | - | chr5_4:11696925-11696944 | None:intergenic | 45.0% | |
| TCAAAAGAAGGACGCAGACT+TGG | + | chr5_4:11697060-11697079 | Msa0837670:CDS | 45.0% | |
| ACAACTCAAAGCTCTTGAGG+AGG | + | chr5_4:11697102-11697121 | Msa0837670:CDS | 45.0% | |
| ! | TTACCTTTTGCCGTTCAGTG+TGG | + | chr5_4:11697397-11697416 | Msa0837670:intron | 45.0% |
| ! | TGCAGCAGCTGCTTCATTTT+CGG | - | chr5_4:11697697-11697716 | None:intergenic | 45.0% |
| TGCTGCAGAAGATATGCAGA+AGG | + | chr5_4:11697710-11697729 | Msa0837670:CDS | 45.0% | |
| ! | GTGGTCTTGATTGAAGAGAC+TGG | - | chr5_4:11697974-11697993 | None:intergenic | 45.0% |
| AGGAAACAGAGTCGTAACTG+AGG | - | chr5_4:11698519-11698538 | None:intergenic | 45.0% | |
| TTACGGAAGAAAGGGGATGA+GGG | - | chr5_4:11698825-11698844 | None:intergenic | 45.0% | |
| ATTACGGAAGAAAGGGGATG+AGG | - | chr5_4:11698826-11698845 | None:intergenic | 45.0% | |
| ! | AGACATATACCTGTTGGCTG+TGG | - | chr5_4:11698912-11698931 | None:intergenic | 45.0% |
| TGGCAGAGACATATACCTGT+TGG | - | chr5_4:11698918-11698937 | None:intergenic | 45.0% | |
| TCTTTCCATGTTGCGAAGCT+CGG | - | chr5_4:11699316-11699335 | None:intergenic | 45.0% | |
| TGAAGCAGCATCCCAATAAC+TGG | - | chr5_4:11699541-11699560 | None:intergenic | 45.0% | |
| TGTAGGCTCTTGGTAGAAAC+AGG | + | chr5_4:11699603-11699622 | Msa0837670:intron | 45.0% | |
| AATTGACGAGCCTACTACAC+CGG | - | chr5_4:11699788-11699807 | None:intergenic | 45.0% | |
| ! | CTCACTGTTGATGAGAAAGC+AGG | + | chr5_4:11700342-11700361 | Msa0837670:three_prime_UTR | 45.0% |
| CAGCCTGTAAAGAAACGTTG+AGG | + | chr5_4:11700438-11700457 | Msa0837670:three_prime_UTR | 45.0% | |
| AACGAATATCACTACGGCGA+GGG | + | chr5_4:11700470-11700489 | Msa0837670:three_prime_UTR | 45.0% | |
| TCTGAGCTTGTGTAAGAGGT+TGG | + | chr5_4:11700836-11700855 | Msa0837670:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTAATTCTTT+TGG | + | chr5_4:11698543-11698562 | Msa0837670:intron | 5.0% |
| TGCAGTTGCTCTCGGCAATT+TGG | - | chr5_4:11695166-11695185 | None:intergenic | 50.0% | |
| TGCACGTATGCAGTTGCTCT+CGG | - | chr5_4:11695174-11695193 | None:intergenic | 50.0% | |
| ATGGCCAGGTCAGCTTGAAT+CGG | + | chr5_4:11695285-11695304 | Msa0837670:intron | 50.0% | |
| ! | ACTGTTGGCTGCCAAAGAAG+AGG | + | chr5_4:11695351-11695370 | Msa0837670:CDS | 50.0% |
| TGCAGGGTTGGAGGAAGATA+GGG | - | chr5_4:11695624-11695643 | None:intergenic | 50.0% | |
| CCGATTGAACTAACACCGAC+AGG | - | chr5_4:11695729-11695748 | None:intergenic | 50.0% | |
| !! | TCGGTGTTAGTTCAATCGGC+CGG | + | chr5_4:11695730-11695749 | Msa0837670:intron | 50.0% |
| GATTCACCCCCTCTTGAGTT+TGG | + | chr5_4:11695832-11695851 | Msa0837670:intron | 50.0% | |
| GTGACTCCAAACTCAAGAGG+GGG | - | chr5_4:11695841-11695860 | None:intergenic | 50.0% | |
| GGAGCTAGAGATATGAACGC+GGG | + | chr5_4:11695921-11695940 | Msa0837670:intron | 50.0% | |
| CAAGATACGCTGACCTATCG+TGG | + | chr5_4:11696315-11696334 | Msa0837670:intron | 50.0% | |
| GACCTAGAAGACGAACCAGT+AGG | + | chr5_4:11696758-11696777 | Msa0837670:intron | 50.0% | |
| CTTCACGTGTTATGTGGCCA+AGG | - | chr5_4:11696926-11696945 | None:intergenic | 50.0% | |
| TCAAGACTGCTGATCTGCAG+AGG | - | chr5_4:11696998-11697017 | None:intergenic | 50.0% | |
| TGCAGATCAGCAGTCTTGAG+AGG | + | chr5_4:11696999-11697018 | Msa0837670:intron | 50.0% | |
| GCAGATCAGCAGTCTTGAGA+GGG | + | chr5_4:11697000-11697019 | Msa0837670:intron | 50.0% | |
| TGTGAGTGCTCCACACTGAA+CGG | - | chr5_4:11697410-11697429 | None:intergenic | 50.0% | |
| TGGCTAGACAACAAGCCCAA+AGG | + | chr5_4:11698715-11698734 | Msa0837670:CDS | 50.0% | |
| GGCTAGACAACAAGCCCAAA+GGG | + | chr5_4:11698716-11698735 | Msa0837670:CDS | 50.0% | |
| TAGACAACAAGCCCAAAGGG+AGG | + | chr5_4:11698719-11698738 | Msa0837670:CDS | 50.0% | |
| ! | TGCTAGCTCTTCCTCCCTTT+GGG | - | chr5_4:11698733-11698752 | None:intergenic | 50.0% |
| AAATCGTCTCCACAGCCAAC+AGG | + | chr5_4:11698900-11698919 | Msa0837670:CDS | 50.0% | |
| AAAGTCCGAGCTTCGCAACA+TGG | + | chr5_4:11699308-11699327 | Msa0837670:CDS | 50.0% | |
| GCTGCTTCAGTTTAGTCCAG+AGG | + | chr5_4:11699552-11699571 | Msa0837670:CDS | 50.0% | |
| GCTTCAGTTTAGTCCAGAGG+AGG | + | chr5_4:11699555-11699574 | Msa0837670:CDS | 50.0% | |
| CTACCTTGCATGTAGGCTCT+TGG | + | chr5_4:11699593-11699612 | Msa0837670:intron | 50.0% | |
| CTACCAAGAGCCTACATGCA+AGG | - | chr5_4:11699599-11699618 | None:intergenic | 50.0% | |
| GGTGTAGTAGGCTCGTCAAT+TGG | + | chr5_4:11699787-11699806 | Msa0837670:intron | 50.0% | |
| CAACGAATATCACTACGGCG+AGG | + | chr5_4:11700469-11700488 | Msa0837670:three_prime_UTR | 50.0% | |
| ACCTCCGATTCAAGCTGACC+TGG | - | chr5_4:11695292-11695311 | None:intergenic | 55.0% | |
| !! | GGGCTCAGGTTGACCTTCAA+TGG | - | chr5_4:11695603-11695622 | None:intergenic | 55.0% |
| TTGGAGGAAGATAGGGGCTC+AGG | - | chr5_4:11695617-11695636 | None:intergenic | 55.0% | |
| GCAGGGTTGGAGGAAGATAG+GGG | - | chr5_4:11695623-11695642 | None:intergenic | 55.0% | |
| GTGCAGGGTTGGAGGAAGAT+AGG | - | chr5_4:11695625-11695644 | None:intergenic | 55.0% | |
| TTGCATGGTATGGTCGAGCG+AGG | + | chr5_4:11696553-11696572 | Msa0837670:intron | 55.0% | |
| AGGGAGCCAGTCTTACGTCA+TGG | + | chr5_4:11696577-11696596 | Msa0837670:intron | 55.0% | |
| GCTCCACACTGAACGGCAAA+AGG | - | chr5_4:11697403-11697422 | None:intergenic | 55.0% | |
| GAACTTGGCAGTCAGATGCG+AGG | + | chr5_4:11697662-11697681 | Msa0837670:intron | 55.0% | |
| ! | GTGCTAGCTCTTCCTCCCTT+TGG | - | chr5_4:11698734-11698753 | None:intergenic | 55.0% |
| GAAGAGTCGCTTGCAGGACT+CGG | - | chr5_4:11700192-11700211 | None:intergenic | 55.0% | |
| AGTCCTGCAAGCGACTCTTC+AGG | + | chr5_4:11700192-11700211 | Msa0837670:CDS | 55.0% | |
| GATCCTGAAGAGTCGCTTGC+AGG | - | chr5_4:11700198-11700217 | None:intergenic | 55.0% | |
| GCAAGCGACTCTTCAGGATC+TGG | + | chr5_4:11700198-11700217 | Msa0837670:CDS | 55.0% | |
| ACTACGGCGAGGGAGAACAT+GGG | + | chr5_4:11700480-11700499 | Msa0837670:three_prime_UTR | 55.0% | |
| CGAGATTGAGCAACCCTAGC+TGG | - | chr5_4:11700800-11700819 | None:intergenic | 55.0% | |
| !! | GTGTAAGAGGTTGGTGCTGC+AGG | + | chr5_4:11700845-11700864 | Msa0837670:three_prime_UTR | 55.0% |
| AAGCTGGGAGGCTGCATCTC+TGG | + | chr5_4:11695124-11695143 | Msa0837670:CDS | 60.0% | |
| GCCAGGTCAGCTTGAATCGG+AGG | + | chr5_4:11695288-11695307 | Msa0837670:intron | 60.0% | |
| ATGGTATGGTCGAGCGAGGC+AGG | + | chr5_4:11696557-11696576 | Msa0837670:intron | 60.0% | |
| TGGTATGGTCGAGCGAGGCA+GGG | + | chr5_4:11696558-11696577 | Msa0837670:intron | 60.0% | |
| !! | TCTTTTGGCCTTCGGGGGAG+TGG | + | chr5_4:11698558-11698577 | Msa0837670:intron | 60.0% |
| !! | CTTTTGGCCTTCGGGGGAGT+GGG | + | chr5_4:11698559-11698578 | Msa0837670:intron | 60.0% |
| TTCATCACCCACTCCCCCGA+AGG | - | chr5_4:11698569-11698588 | None:intergenic | 60.0% | |
| ! | AGTCGCTTGCAGGACTCGGT+GGG | - | chr5_4:11700188-11700207 | None:intergenic | 60.0% |
| CACTACGGCGAGGGAGAACA+TGG | + | chr5_4:11700479-11700498 | Msa0837670:three_prime_UTR | 60.0% | |
| GAGTCGCTTGCAGGACTCGG+TGG | - | chr5_4:11700189-11700208 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11695010 | 11700974 | 11695010 | ID=Msa0837670;Name=Msa0837670 |
| chr5_4 | mRNA | 11695010 | 11700974 | 11695010 | ID=Msa0837670-mRNA-1;Parent=Msa0837670;Name=Msa0837670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.64|0.53|0.8|0.78|0.86|15|720|424 |
| chr5_4 | exon | 11695010 | 11695027 | 11695010 | ID=Msa0837670-mRNA-1:exon:5140;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11695110 | 11695218 | 11695110 | ID=Msa0837670-mRNA-1:exon:5141;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11695293 | 11695372 | 11695293 | ID=Msa0837670-mRNA-1:exon:5142;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11697004 | 11697132 | 11697004 | ID=Msa0837670-mRNA-1:exon:5143;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11697215 | 11697315 | 11697215 | ID=Msa0837670-mRNA-1:exon:5144;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11697453 | 11697586 | 11697453 | ID=Msa0837670-mRNA-1:exon:5145;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11697673 | 11697770 | 11697673 | ID=Msa0837670-mRNA-1:exon:5146;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11697876 | 11697995 | 11697876 | ID=Msa0837670-mRNA-1:exon:5147;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11698122 | 11698149 | 11698122 | ID=Msa0837670-mRNA-1:exon:5148;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11698314 | 11698372 | 11698314 | ID=Msa0837670-mRNA-1:exon:5149;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11698711 | 11698782 | 11698711 | ID=Msa0837670-mRNA-1:exon:5150;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11698874 | 11698921 | 11698874 | ID=Msa0837670-mRNA-1:exon:5151;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11699297 | 11699402 | 11699297 | ID=Msa0837670-mRNA-1:exon:5152;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11699518 | 11699576 | 11699518 | ID=Msa0837670-mRNA-1:exon:5153;Parent=Msa0837670-mRNA-1 |
| chr5_4 | exon | 11700141 | 11700974 | 11700141 | ID=Msa0837670-mRNA-1:exon:5154;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11695010 | 11695027 | 11695010 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11695110 | 11695218 | 11695110 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11695293 | 11695372 | 11695293 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11697004 | 11697132 | 11697004 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11697215 | 11697315 | 11697215 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11697453 | 11697586 | 11697453 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11697673 | 11697770 | 11697673 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11697876 | 11697995 | 11697876 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11698122 | 11698149 | 11698122 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11698314 | 11698372 | 11698314 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11698711 | 11698782 | 11698711 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11698874 | 11698921 | 11698874 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11699297 | 11699402 | 11699297 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11699518 | 11699576 | 11699518 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | CDS | 11700141 | 11700254 | 11700141 | ID=Msa0837670-mRNA-1:cds;Parent=Msa0837670-mRNA-1 |
| chr5_4 | three_prime_UTR | 11700255 | 11700974 | 11700255 | ID=Msa0837670-mRNA-1:three_prime_utr;Parent=Msa0837670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
