AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479170 MtrunA17_Chr3g0141921 95.923 466 19 0 1 466 1 466 0.0 884
Msa0479170 MtrunA17_Chr4g0004211 29.333 450 241 10 72 460 224 657 5.09e-42 158
Msa0479170 MtrunA17_Chr2g0331991 29.350 477 239 14 68 461 248 709 6.59e-42 158
Msa0479170 MtrunA17_Chr4g0034861 28.918 453 245 11 72 461 194 632 8.41e-40 151
Msa0479170 MtrunA17_Chr3g0141911 50.588 170 47 6 283 451 34 167 9.62e-38 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479170 AT1G75420.1 75.930 457 105 3 8 464 7 458 0.0 675
Msa0479170 AT1G75420.3 78.271 428 89 2 37 464 9 432 0.0 650
Msa0479170 AT1G19710.1 73.191 470 119 4 1 464 1 469 0.0 647
Msa0479170 AT1G75420.2 81.501 373 69 0 92 464 1 373 0.0 634
Msa0479170 AT1G52420.1 29.646 452 252 11 68 461 226 669 4.06e-44 164
Msa0479170 AT3G15940.2 28.125 480 248 11 68 461 228 696 1.80e-37 145
Msa0479170 AT3G15940.1 28.125 480 248 11 68 461 228 696 1.80e-37 145

Find 125 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCAATTTACAATTTAA+TGG 0.196158 3_3:+84048152 None:intergenic
TGCACATAACATTGTGAAAT+TGG 0.197530 3_3:-84048334 Msa0479170:CDS
ACGAAATGCCATTGCTTCTA+TGG 0.222266 3_3:+84049670 None:intergenic
TAAATTGATTCCAAAGAAAA+AGG 0.249712 3_3:-84048141 Msa0479170:three_prime_UTR
CCCACTTCCTTTGTTCTGTA+TGG 0.261172 3_3:-84048082 Msa0479170:three_prime_UTR
GTGGCTGGATGCCGTCTTAA+AGG 0.261650 3_3:-84050993 Msa0479170:CDS
GGGTTCTTCGTGAGCATGTT+AGG 0.272900 3_3:-84050619 Msa0479170:CDS
AATAGGACCAGGGAGAGTTT+AGG 0.282610 3_3:-84050827 Msa0479170:CDS
TGATCAGGTTATTTATAGTT+TGG 0.290255 3_3:-84052119 Msa0479170:CDS
TGGAAATAGCAAGGAACTTA+TGG 0.291694 3_3:-84050669 Msa0479170:CDS
AGATGTACAACATAAGTTTC+AGG 0.314019 3_3:+84050692 None:intergenic
TGAAAGTTTGCAGCTCATTC+AGG 0.315271 3_3:-84050263 Msa0479170:CDS
GAGAGTGAAAGAGAGGTTTC+TGG 0.327030 3_3:-84048265 Msa0479170:CDS
ATAGGACCAGGGAGAGTTTA+GGG 0.339089 3_3:-84050826 Msa0479170:intron
TCGCACGAACTATCTCTTTC+TGG 0.340307 3_3:-84052232 Msa0479170:CDS
TCTTTGCATGCTATACTTGT+AGG 0.349992 3_3:-84050220 Msa0479170:CDS
GTCACACCATCCTTGCCTTC+AGG 0.359263 3_3:+84048363 None:intergenic
CAGTCACGGGGAGAATGTTT+TGG 0.367113 3_3:-84049701 Msa0479170:CDS
TGTTGAGAAGAGGCTGACTA+TGG 0.372554 3_3:-84048304 Msa0479170:CDS
ACTGTGGAGATCGTGGTTAA+TGG 0.373098 3_3:-84048405 Msa0479170:CDS
GAAACTTATGTTGTACATCT+TGG 0.390726 3_3:-84050689 Msa0479170:CDS
AATGTTGGACAGAGGAGTTC+AGG 0.395727 3_3:-84052089 Msa0479170:intron
CTGCAGAGTACTGGAAGAAT+AGG 0.404454 3_3:-84050844 Msa0479170:CDS
CTAGGTAAGGAGCCACTGTC+AGG 0.405315 3_3:+84050101 None:intergenic
CTGTGGAGATCGTGGTTAAT+GGG 0.408149 3_3:-84048404 Msa0479170:CDS
TTCATGAAATCCAAGGGGCT+TGG 0.414417 3_3:+84052277 None:intergenic
GTGTTGGTTCTGATGTTGTT+TGG 0.416917 3_3:-84052168 Msa0479170:CDS
ATCATAGCACCTGCAACAAA+AGG 0.424798 3_3:+84050881 None:intergenic
TACAGCTCTTAAAGCTGATC+TGG 0.435509 3_3:-84051044 Msa0479170:CDS
ATCGTGGTTAATGGGACAAC+CGG 0.438418 3_3:-84048396 Msa0479170:CDS
CTTCGTGGTGTTGCACGAAT+CGG 0.442183 3_3:+84052360 None:intergenic
TAATGGTGAAGTTCCTAAGC+TGG 0.455786 3_3:+84048169 None:intergenic
ACAATTAAATTAACCAGCTT+AGG 0.455925 3_3:-84048182 Msa0479170:exon
GTAGGTGTTTCACGTGGTAA+AGG 0.459608 3_3:-84050313 Msa0479170:intron
ATGAAAGCTAGTAACATTAA+CGG 0.460740 3_3:+84052427 None:intergenic
TAGGTGTTTCACGTGGTAAA+GGG 0.464375 3_3:-84050312 Msa0479170:CDS
CTGATTCCGTTGTGCTTCGA+AGG 0.470227 3_3:+84052336 None:intergenic
CACATATAACTGCAGAGTAC+TGG 0.470342 3_3:-84050853 Msa0479170:CDS
ATTCTAAATACTGCTGTAGC+TGG 0.475189 3_3:-84051019 Msa0479170:CDS
CCTGCCTGCAAAAGGCGAAA+AGG 0.475194 3_3:-84051074 Msa0479170:CDS
GGCATTTCGTCTGCCTGTAC+TGG 0.475966 3_3:-84049657 Msa0479170:intron
TCCGTCGGAAATGCACCATC+TGG 0.478042 3_3:-84052301 Msa0479170:CDS
TAGTTTGGAGAGTAAAATGT+TGG 0.480059 3_3:-84052104 Msa0479170:CDS
TGATAGGTCCTGCCTGCAAA+AGG 0.482173 3_3:-84051082 Msa0479170:intron
GCCTTCAGGATGCAGCAAAC+CGG 0.485028 3_3:+84048377 None:intergenic
TGCTGTAGCTGGAAAGTGGC+TGG 0.486096 3_3:-84051008 Msa0479170:CDS
TGTTCTTGTTCAGAATTCTC+AGG 0.489341 3_3:-84050068 Msa0479170:intron
GGTTCTTCGTGAGCATGTTA+GGG 0.489601 3_3:-84050618 Msa0479170:CDS
CTTTGCATGCTATACTTGTA+GGG 0.491562 3_3:-84050219 Msa0479170:CDS
AGGCTGACTATGGGAAAGAA+AGG 0.492284 3_3:-84048294 Msa0479170:CDS
TGAATCCACCATAAAACCTT+CGG 0.503051 3_3:+84050950 None:intergenic
GTATCCTGCTGAACATGATC+AGG 0.504998 3_3:-84052134 Msa0479170:CDS
CAGAAGATAGTGTAGCAAAG+AGG 0.510374 3_3:-84050640 Msa0479170:CDS
CTTCGATTTCATGAAATCCA+AGG 0.514716 3_3:+84052270 None:intergenic
TTCGATTTCATGAAATCCAA+GGG 0.516013 3_3:+84052271 None:intergenic
GGCGAAGCATTCAGTAGCAT+TGG 0.516216 3_3:-84052464 Msa0479170:CDS
TGGTGCATTTCCGACGGAAG+AGG 0.519098 3_3:+84052306 None:intergenic
ACAAGTATAGCATGCAAAGA+TGG 0.519400 3_3:+84050223 None:intergenic
CTGCAATTCTATGTGACATA+TGG 0.519548 3_3:+84048238 None:intergenic
AGAAAATATGTATTACCCAT+TGG 0.523554 3_3:-84047912 Msa0479170:three_prime_UTR
GGTATGAGAGAGTGAAAGAG+AGG 0.524664 3_3:-84048272 Msa0479170:CDS
GCCAATTCCATCAAAAGTAA+AGG 0.527566 3_3:+84052205 None:intergenic
AGAAGATAGTGTAGCAAAGA+GGG 0.528791 3_3:-84050639 Msa0479170:CDS
ATAACCTGATCATGTTCAGC+AGG 0.529328 3_3:+84052130 None:intergenic
AGTTACCCTCGTTCTTCCGA+AGG 0.529697 3_3:-84050966 Msa0479170:CDS
TCCAAGGGGCTTGGACCAGA+TGG 0.531755 3_3:+84052286 None:intergenic
GAGCATGTTAGGGAATCTCT+TGG 0.531903 3_3:-84050608 Msa0479170:CDS
TTGTGCTTCGAAGGTCTTCG+TGG 0.533107 3_3:+84052345 None:intergenic
TAGCATTGGCGAAGAAAAGA+TGG 0.533158 3_3:-84052450 Msa0479170:CDS
GTTCTGTATGGATGCGTAGT+GGG 0.534468 3_3:-84048070 Msa0479170:three_prime_UTR
TTGCACGAATCGGAATTGTT+CGG 0.534522 3_3:+84052370 None:intergenic
AGTGAAGGACGTACCAGTAC+AGG 0.541451 3_3:+84049644 None:intergenic
CAAGAACATCAATAGAAGCT+AGG 0.543899 3_3:+84050083 None:intergenic
AACATACCCTAAACTCTCCC+TGG 0.543946 3_3:+84050820 None:intergenic
GGTGCATTTCCGACGGAAGA+GGG 0.544846 3_3:+84052307 None:intergenic
TTCACAATGTTATGTGCAAG+AGG 0.545519 3_3:+84048339 None:intergenic
TCCATACAGAACAAAGGAAG+TGG 0.545757 3_3:+84048081 None:intergenic
AGAACAACTCGATTCAAAAG+AGG 0.547577 3_3:-84052558 Msa0479170:five_prime_UTR
CTTCGCTCGATCGATCGATC+TGG 0.547685 3_3:-84052636 Msa0479170:five_prime_UTR
TTGCAGGGCACTGCAGCTGG+AGG 0.549732 3_3:-84048429 Msa0479170:intron
ACCATCTGGTCCAAGCCCCT+TGG 0.551441 3_3:-84052287 Msa0479170:CDS
GAAATCGAAGCTAGTTCTCA+TGG 0.554299 3_3:-84052257 Msa0479170:CDS
TAGTGACATACTATTTATGA+TGG 0.554440 3_3:+84050559 None:intergenic
CTGCATCCTGAAGGCAAGGA+TGG 0.559919 3_3:-84048369 Msa0479170:CDS
TCATAGCACCTGCAACAAAA+GGG 0.561260 3_3:+84050882 None:intergenic
TGCGTAGTGGGTTGATGTAT+AGG 0.567635 3_3:-84048058 Msa0479170:three_prime_UTR
ACATCAATAGAAGCTAGGTA+AGG 0.568775 3_3:+84050088 None:intergenic
ATGTTCAGCAGGATACTGAT+TGG 0.569395 3_3:+84052141 None:intergenic
TAGAATTGCAGTGGTTCTCA+AGG 0.573300 3_3:-84048226 Msa0479170:CDS
ACCGGTTTGCTGCATCCTGA+AGG 0.579599 3_3:-84048378 Msa0479170:CDS
AGTACTGGAAGAATAGGACC+AGG 0.581747 3_3:-84050838 Msa0479170:CDS
GAGCTGCAAACTTTCATGAA+AGG 0.583871 3_3:+84050270 None:intergenic
GAGAGTAAAATGTTGGACAG+AGG 0.584323 3_3:-84052097 Msa0479170:CDS
AAGGATAACCATAGAAGCAA+TGG 0.585803 3_3:-84049678 Msa0479170:CDS
GTTGAGAAGAGGCTGACTAT+GGG 0.594669 3_3:-84048303 Msa0479170:CDS
GGCTGACTATGGGAAAGAAA+GGG 0.596427 3_3:-84048293 Msa0479170:CDS
ACCAGATGGTGCATTTCCGA+CGG 0.597524 3_3:+84052300 None:intergenic
TTTGCTGCATCCTGAAGGCA+AGG 0.599998 3_3:-84048373 Msa0479170:CDS
CAGATTCACCCCTCTTCCGT+CGG 0.601811 3_3:-84052316 Msa0479170:CDS
TGTTCTGTATGGATGCGTAG+TGG 0.606087 3_3:-84048071 Msa0479170:three_prime_UTR
TGGTGGATTCATGAAATGCG+AGG 0.616138 3_3:-84050938 Msa0479170:CDS
TGGCAAGTCATGTTGAGAAG+AGG 0.617321 3_3:-84048314 Msa0479170:CDS
CACTGCAGCTGGAGGCACTG+TGG 0.621939 3_3:-84048421 Msa0479170:CDS
GCGAGGGCATTATTTCAAAG+AGG 0.622892 3_3:-84050921 Msa0479170:CDS
CCATACAGAACAAAGGAAGT+GGG 0.624963 3_3:+84048082 None:intergenic
TGGAGGCACTGTGGAGATCG+TGG 0.626460 3_3:-84048412 Msa0479170:CDS
GTGCATTTCCGACGGAAGAG+GGG 0.627718 3_3:+84052308 None:intergenic
CACGAACTATCTCTTTCTGG+TGG 0.632042 3_3:-84052229 Msa0479170:CDS
ATACTGCTGTAGCTGGAAAG+TGG 0.634836 3_3:-84051012 Msa0479170:CDS
TGTACATCTTGGAAATAGCA+AGG 0.635730 3_3:-84050678 Msa0479170:CDS
GGTGGATTCATGAAATGCGA+GGG 0.637828 3_3:-84050937 Msa0479170:CDS
TGTTAACAAAACCCTGACAG+TGG 0.644245 3_3:-84050113 Msa0479170:CDS
TAGGTAAGGAGCCACTGTCA+GGG 0.644824 3_3:+84050102 None:intergenic
AACTTTCATGAAAGGCACGA+AGG 0.649061 3_3:+84050278 None:intergenic
CGAAGACCTTCGAAGCACAA+CGG 0.652502 3_3:-84052342 Msa0479170:CDS
CAGTAAAGTTGTGATTACAA+TGG 0.655195 3_3:-84052485 Msa0479170:exon
ATAAAACCTTCGGAAGAACG+AGG 0.660037 3_3:+84050960 None:intergenic
TATGTCACATAGAATTGCAG+TGG 0.663579 3_3:-84048235 Msa0479170:CDS
TACGCATCCATACAGAACAA+AGG 0.667502 3_3:+84048075 None:intergenic
TAAAACCTTCGGAAGAACGA+GGG 0.689246 3_3:+84050961 None:intergenic
TAGCACCTGCAACAAAAGGG+AGG 0.690112 3_3:+84050885 None:intergenic
TTCTCTTCATACCAGTCACG+GGG 0.693192 3_3:-84049713 Msa0479170:intron
GTACTGGAAGAATAGGACCA+GGG 0.700205 3_3:-84050837 Msa0479170:CDS
TCGATTTCATGAAATCCAAG+GGG 0.703979 3_3:+84052272 None:intergenic
TTAAATGTAGGTGTTTCACG+TGG 0.709816 3_3:-84050319 Msa0479170:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATACAATGAATTAT+AGG + chr3_3:84048777-84048796 None:intergenic 10.0%
!! TAATTCATTGTATAAATTAA+CGG - chr3_3:84048778-84048797 Msa0479170:intron 10.0%
!! AATATATTATTAAATGAATC+TGG + chr3_3:84049799-84049818 None:intergenic 10.0%
!!! TAAAGTATTATTTTAGTTTT+TGG - chr3_3:84050837-84050856 Msa0479170:CDS 10.0%
!!! AAAGTATTATTTTAGTTTTT+GGG - chr3_3:84050838-84050857 Msa0479170:CDS 10.0%
!! ATGAAACCAAAATAATAAAA+AGG + chr3_3:84051248-84051267 None:intergenic 15.0%
!! AAAAATAATACTGTTAAAGT+TGG - chr3_3:84051802-84051821 Msa0479170:intron 15.0%
!!! ATATTTTCTTCTCAAAAAAA+GGG + chr3_3:84052669-84052688 None:intergenic 15.0%
!!! TAGTTATGTTTTTCCATATT+TGG - chr3_3:84048638-84048657 Msa0479170:intron 20.0%
!!! CATATTTGGAATTATGAATA+GGG - chr3_3:84048652-84048671 Msa0479170:intron 20.0%
!! TATAAATTAACGGTAGAATT+TGG - chr3_3:84048788-84048807 Msa0479170:intron 20.0%
!!! AACTTTTTTTTTCATCTGAT+TGG - chr3_3:84049483-84049502 Msa0479170:intron 20.0%
!!! CATTTTAATTCTACAAAATC+AGG + chr3_3:84049880-84049899 None:intergenic 20.0%
!!! TTTTGTTAACAAAATGAACA+CGG + chr3_3:84050470-84050489 None:intergenic 20.0%
!! TAACACGTATAGATATAAAA+GGG + chr3_3:84051006-84051025 None:intergenic 20.0%
!! TTAACACGTATAGATATAAA+AGG + chr3_3:84051007-84051026 None:intergenic 20.0%
!!! TTTTTTAGATTTTTTTCGAC+AGG + chr3_3:84051290-84051309 None:intergenic 20.0%
!! AGTAAAAAAATAGTTACACA+GGG + chr3_3:84051444-84051463 None:intergenic 20.0%
!! TAGTAAAAAAATAGTTACAC+AGG + chr3_3:84051445-84051464 None:intergenic 20.0%
!!! ACTATTTTTTTACTAATTCG+TGG - chr3_3:84051450-84051469 Msa0479170:intron 20.0%
!! ATGAAACTAATATTATTCTG+AGG - chr3_3:84051734-84051753 Msa0479170:intron 20.0%
!! GGAATCAATTTACAATTTAA+TGG + chr3_3:84052443-84052462 None:intergenic 20.0%
!!! TAAATTGATTCCAAAGAAAA+AGG - chr3_3:84052451-84052470 Msa0479170:CDS 20.0%
!!! CATATTTTCTTCTCAAAAAA+AGG + chr3_3:84052670-84052689 None:intergenic 20.0%
!!! CGCATCATGTAATTTTTTTA+GGG + chr3_3:84048072-84048091 None:intergenic 25.0%
!!! TCGCATCATGTAATTTTTTT+AGG + chr3_3:84048073-84048092 None:intergenic 25.0%
! ATGAAAGCTAGTAACATTAA+CGG + chr3_3:84048168-84048187 None:intergenic 25.0%
! TGATCAGGTTATTTATAGTT+TGG - chr3_3:84048473-84048492 Msa0479170:intron 25.0%
! CAATAAAGATCAAAACGAAA+AGG + chr3_3:84048550-84048569 None:intergenic 25.0%
!!! GATCTTTATTGTTGTTTACT+TGG - chr3_3:84048559-84048578 Msa0479170:intron 25.0%
! CCTATTCATAATTCCAAATA+TGG + chr3_3:84048654-84048673 None:intergenic 25.0%
!! CCATATTTGGAATTATGAAT+AGG - chr3_3:84048651-84048670 Msa0479170:intron 25.0%
! TGTGAACTATGTTTATCAAA+TGG + chr3_3:84049326-84049345 None:intergenic 25.0%
! TAGTGACATACTATTTATGA+TGG + chr3_3:84050036-84050055 None:intergenic 25.0%
! AATGAATATTGAATGAGTAC+AGG + chr3_3:84050059-84050078 None:intergenic 25.0%
! AGGTACACACTATATTAAAT+TGG + chr3_3:84050195-84050214 None:intergenic 25.0%
!!! ATACATTACCAAGTTGATTA+TGG - chr3_3:84050561-84050580 Msa0479170:intron 25.0%
!! TCAAACTTTTGACATTATGA+TGG - chr3_3:84050607-84050626 Msa0479170:CDS 25.0%
!! TCATGCAATCTAAAGTTTAA+GGG + chr3_3:84050636-84050655 None:intergenic 25.0%
!! ATCATGCAATCTAAAGTTTA+AGG + chr3_3:84050637-84050656 None:intergenic 25.0%
!!! TGCAATATGTTTTGGAAATT+AGG + chr3_3:84050671-84050690 None:intergenic 25.0%
!! TGTCTGCCTTTTTATTATTT+TGG - chr3_3:84051239-84051258 Msa0479170:intron 25.0%
! ATCATTCAAAAAAGGCAATT+TGG + chr3_3:84051354-84051373 None:intergenic 25.0%
! CTGATGTTATCATTCAAAAA+AGG + chr3_3:84051362-84051381 None:intergenic 25.0%
! GTAAAAAAATAGTTACACAG+GGG + chr3_3:84051443-84051462 None:intergenic 25.0%
! AAGGAAAATTAGTGAATTTG+AGG + chr3_3:84051585-84051604 None:intergenic 25.0%
! TTAAAACAACTAGGATAACA+TGG + chr3_3:84051638-84051657 None:intergenic 25.0%
! AACTTGTGTAACATTAATTG+AGG - chr3_3:84051863-84051882 Msa0479170:intron 25.0%
! TTACAAATAGATTCCGAAAT+TGG + chr3_3:84052081-84052100 None:intergenic 25.0%
! ACAATTAAATTAACCAGCTT+AGG - chr3_3:84052410-84052429 Msa0479170:CDS 25.0%
! AGAAAATATGTATTACCCAT+TGG - chr3_3:84052680-84052699 Msa0479170:five_prime_UTR 25.0%
! TTATTAAAAAAAGGGCCAAT+GGG + chr3_3:84052698-84052717 None:intergenic 25.0%
! TTTATTAAAAAAAGGGCCAA+TGG + chr3_3:84052699-84052718 None:intergenic 25.0%
CAGTAAAGTTGTGATTACAA+TGG - chr3_3:84048107-84048126 Msa0479170:three_prime_UTR 30.0%
TTCGATTTCATGAAATCCAA+GGG + chr3_3:84048324-84048343 None:intergenic 30.0%
!! ACCTTTACTTTTGATGGAAT+TGG - chr3_3:84048386-84048405 Msa0479170:CDS 30.0%
TAGTTTGGAGAGTAAAATGT+TGG - chr3_3:84048488-84048507 Msa0479170:intron 30.0%
ATTCAGTGTGTCTACAAATA+GGG - chr3_3:84048675-84048694 Msa0479170:intron 30.0%
AAATAGGGATTTGACTCAAA+TGG - chr3_3:84048690-84048709 Msa0479170:intron 30.0%
ACAATGGTGAAATCCAATAA+GGG + chr3_3:84048899-84048918 None:intergenic 30.0%
TACAATGGTGAAATCCAATA+AGG + chr3_3:84048900-84048919 None:intergenic 30.0%
!! ACCATTGTAGTGTTTTTATG+TGG - chr3_3:84048911-84048930 Msa0479170:intron 30.0%
TCCATAAACTTAAGCAATCA+TGG + chr3_3:84048940-84048959 None:intergenic 30.0%
ATGATTGCTTAAGTTTATGG+AGG - chr3_3:84048939-84048958 Msa0479170:intron 30.0%
TCATATATAGACACAGAAGA+GGG + chr3_3:84049174-84049193 None:intergenic 30.0%
ACGTCAAAAAGTTCATTAAG+TGG + chr3_3:84049241-84049260 None:intergenic 30.0%
TGATAAACATAGTTCACATG+TGG - chr3_3:84049328-84049347 Msa0479170:intron 30.0%
!! TGCTTAACTCGTATTTTTGT+GGG + chr3_3:84049364-84049383 None:intergenic 30.0%
!! TTGCTTAACTCGTATTTTTG+TGG + chr3_3:84049365-84049384 None:intergenic 30.0%
TGTAATCAGTTTGATTGAGT+TGG - chr3_3:84049388-84049407 Msa0479170:intron 30.0%
CTTAGAAGTTCAATAACACA+TGG + chr3_3:84049460-84049479 None:intergenic 30.0%
!! GGTAACTTTTTCCTTTAAGA+CGG + chr3_3:84049613-84049632 None:intergenic 30.0%
AGATGTACAACATAAGTTTC+AGG + chr3_3:84049903-84049922 None:intergenic 30.0%
GAAACTTATGTTGTACATCT+TGG - chr3_3:84049903-84049922 Msa0479170:intron 30.0%
! CATGATATTTTCATCCAATG+CGG - chr3_3:84050100-84050119 Msa0479170:CDS 30.0%
TGTAAAAAAGTGAACAGAAG+AGG + chr3_3:84050215-84050234 None:intergenic 30.0%
! TTTTGCTAGTATGTATTCTG+AGG - chr3_3:84050239-84050258 Msa0479170:CDS 30.0%
!!! GTCTAGGGTTTTTTAAATGT+AGG - chr3_3:84050261-84050280 Msa0479170:CDS 30.0%
TGTTTCAGAGAAAAAGATTC+AGG - chr3_3:84050443-84050462 Msa0479170:intron 30.0%
ACAAATCGATATGAGAAGAA+AGG + chr3_3:84050734-84050753 None:intergenic 30.0%
!! ACAAAGTTTGCTAGTTTAGA+AGG - chr3_3:84050776-84050795 Msa0479170:intron 30.0%
!! CAAAGTTTGCTAGTTTAGAA+GGG - chr3_3:84050777-84050796 Msa0479170:intron 30.0%
ACAACTCAAATATCTAGTGA+AGG + chr3_3:84050966-84050985 None:intergenic 30.0%
ACGTATAGATATAAAAGGGA+AGG + chr3_3:84051002-84051021 None:intergenic 30.0%
GATAATGAGAAAATTGACAC+AGG + chr3_3:84051040-84051059 None:intergenic 30.0%
!! AGCATGTCTTTAAAACAACT+AGG + chr3_3:84051647-84051666 None:intergenic 30.0%
CAATCATGTTATCAAAGCAT+TGG + chr3_3:84051779-84051798 None:intergenic 30.0%
AGTTGCAACTAACAAATGAA+TGG + chr3_3:84051847-84051866 None:intergenic 30.0%
! GCTGACTTATAATCAATTCT+TGG - chr3_3:84051887-84051906 Msa0479170:intron 30.0%
! TTTCCGTTAAAAACTTTTGC+AGG - chr3_3:84052147-84052166 Msa0479170:CDS 30.0%
! TTCCGTTAAAAACTTTTGCA+GGG - chr3_3:84052148-84052167 Msa0479170:CDS 30.0%
TGCACATAACATTGTGAAAT+TGG - chr3_3:84052258-84052277 Msa0479170:CDS 30.0%
TTCCAAAGAAAAAGGAAGAA+TGG - chr3_3:84052459-84052478 Msa0479170:CDS 30.0%
! AACCATTCTTCCTTTTTCTT+TGG + chr3_3:84052464-84052483 None:intergenic 30.0%
AAGAAAAAGGAAGAATGGTT+CGG - chr3_3:84052464-84052483 Msa0479170:CDS 30.0%
!!! ACATGTTTTTTATCTTAGCG+AGG + chr3_3:84052578-84052597 None:intergenic 30.0%
AAGATAAAAAACATGTCCGA+AGG - chr3_3:84052582-84052601 Msa0479170:five_prime_UTR 30.0%
TAAAAAAAGCAGTGTACCTT+CGG + chr3_3:84052601-84052620 None:intergenic 30.0%
AGAACAACTCGATTCAAAAG+AGG - chr3_3:84048034-84048053 Msa0479170:three_prime_UTR 35.0%
TCGATTTCATGAAATCCAAG+GGG + chr3_3:84048323-84048342 None:intergenic 35.0%
CTTCGATTTCATGAAATCCA+AGG + chr3_3:84048325-84048344 None:intergenic 35.0%
GCCAATTCCATCAAAAGTAA+AGG + chr3_3:84048390-84048409 None:intergenic 35.0%
AGTGTTAAATTAATGCTGCG+TGG - chr3_3:84048594-84048613 Msa0479170:intron 35.0%
GATTCAGTGTGTCTACAAAT+AGG - chr3_3:84048674-84048693 Msa0479170:intron 35.0%
! TCATGGATTGTGCTCATTTA+AGG - chr3_3:84048741-84048760 Msa0479170:intron 35.0%
! TGATGTAAGAGAAGCTTTGA+CGG - chr3_3:84048837-84048856 Msa0479170:intron 35.0%
TTTAAGAAACCGTCCCTTAT+TGG - chr3_3:84048883-84048902 Msa0479170:intron 35.0%
GCCACATAAAAACACTACAA+TGG + chr3_3:84048915-84048934 None:intergenic 35.0%
GCCATGATTGCTTAAGTTTA+TGG - chr3_3:84048936-84048955 Msa0479170:intron 35.0%
CATATATAGACACAGAAGAG+GGG + chr3_3:84049173-84049192 None:intergenic 35.0%
CTCATATATAGACACAGAAG+AGG + chr3_3:84049175-84049194 None:intergenic 35.0%
! ACTTTTTGACGTTGCTCTAT+TGG - chr3_3:84049249-84049268 Msa0479170:intron 35.0%
TCTAGGCATTTCATACAGAT+TGG + chr3_3:84049423-84049442 None:intergenic 35.0%
ATTCTAAATACTGCTGTAGC+TGG - chr3_3:84049573-84049592 Msa0479170:intron 35.0%
TGAATCCACCATAAAACCTT+CGG + chr3_3:84049645-84049664 None:intergenic 35.0%
TGTACATCTTGGAAATAGCA+AGG - chr3_3:84049914-84049933 Msa0479170:intron 35.0%
TGGAAATAGCAAGGAACTTA+TGG - chr3_3:84049923-84049942 Msa0479170:intron 35.0%
AGAAGATAGTGTAGCAAAGA+GGG - chr3_3:84049953-84049972 Msa0479170:intron 35.0%
!! TAGTATGTATTCTGAGGTCT+AGG - chr3_3:84050245-84050264 Msa0479170:CDS 35.0%
!! AGTATGTATTCTGAGGTCTA+GGG - chr3_3:84050246-84050265 Msa0479170:CDS 35.0%
TTAAATGTAGGTGTTTCACG+TGG - chr3_3:84050273-84050292 Msa0479170:CDS 35.0%
ACAAGTATAGCATGCAAAGA+TGG + chr3_3:84050372-84050391 None:intergenic 35.0%
TCTTTGCATGCTATACTTGT+AGG - chr3_3:84050372-84050391 Msa0479170:intron 35.0%
CTTTGCATGCTATACTTGTA+GGG - chr3_3:84050373-84050392 Msa0479170:intron 35.0%
ACATCAATAGAAGCTAGGTA+AGG + chr3_3:84050507-84050526 None:intergenic 35.0%
CAAGAACATCAATAGAAGCT+AGG + chr3_3:84050512-84050531 None:intergenic 35.0%
TGTTCTTGTTCAGAATTCTC+AGG - chr3_3:84050524-84050543 Msa0479170:intron 35.0%
ATGGCAGAACTGAATCAATT+CGG + chr3_3:84050698-84050717 None:intergenic 35.0%
! TGTTTGACTTCCATGATGTA+TGG - chr3_3:84050751-84050770 Msa0479170:intron 35.0%
AACTTTGTCTCCATACATCA+TGG + chr3_3:84050764-84050783 None:intergenic 35.0%
TTTAGAAGGGACTTGAAGAT+AGG - chr3_3:84050790-84050809 Msa0479170:intron 35.0%
AAGGATAACCATAGAAGCAA+TGG - chr3_3:84050914-84050933 Msa0479170:CDS 35.0%
GTATCATGTGCATTTCCTTA+AGG + chr3_3:84051144-84051163 None:intergenic 35.0%
TAAGGAAACAACAACTGAGT+AGG + chr3_3:84051401-84051420 None:intergenic 35.0%
TATCTTCATTTCTTCGCCAA+GGG + chr3_3:84051506-84051525 None:intergenic 35.0%
TTATCTTCATTTCTTCGCCA+AGG + chr3_3:84051507-84051526 None:intergenic 35.0%
ACAAAAGAACAGTGCAAATG+TGG + chr3_3:84051549-84051568 None:intergenic 35.0%
TAGGATAACATGGTAGAGAA+AGG + chr3_3:84051628-84051647 None:intergenic 35.0%
AATAACCAGCTGAACTAATG+AGG + chr3_3:84051929-84051948 None:intergenic 35.0%
!! TGTTTCTTGCTGTTTCAACT+TGG - chr3_3:84052050-84052069 Msa0479170:intron 35.0%
! TGCCCTGCAAAAGTTTTTAA+CGG + chr3_3:84052153-84052172 None:intergenic 35.0%
TTCACAATGTTATGTGCAAG+AGG + chr3_3:84052256-84052275 None:intergenic 35.0%
CTGCAATTCTATGTGACATA+TGG + chr3_3:84052357-84052376 None:intergenic 35.0%
TATGTCACATAGAATTGCAG+TGG - chr3_3:84052357-84052376 Msa0479170:CDS 35.0%
! TGGTTCTCAAGGAAGTTTTA+CGG - chr3_3:84052377-84052396 Msa0479170:CDS 35.0%
!! TAGCATTGGCGAAGAAAAGA+TGG - chr3_3:84048142-84048161 Msa0479170:three_prime_UTR 40.0%
TTGCACGAATCGGAATTGTT+CGG + chr3_3:84048225-84048244 None:intergenic 40.0%
! GAAATCGAAGCTAGTTCTCA+TGG - chr3_3:84048335-84048354 Msa0479170:CDS 40.0%
!! TGGTGGACCTTTACTTTTGA+TGG - chr3_3:84048380-84048399 Msa0479170:CDS 40.0%
! GAATTGGCGTTTTTGTTGAG+AGG - chr3_3:84048402-84048421 Msa0479170:CDS 40.0%
!! GTGTTGGTTCTGATGTTGTT+TGG - chr3_3:84048424-84048443 Msa0479170:CDS 40.0%
ATGTTCAGCAGGATACTGAT+TGG + chr3_3:84048454-84048473 None:intergenic 40.0%
ATAACCTGATCATGTTCAGC+AGG + chr3_3:84048465-84048484 None:intergenic 40.0%
GAGAGTAAAATGTTGGACAG+AGG - chr3_3:84048495-84048514 Msa0479170:intron 40.0%
!! CTGCGTGGAAATGTTTTAAG+AGG - chr3_3:84048609-84048628 Msa0479170:intron 40.0%
TCCACATGTGTAGCAAATCA+TGG - chr3_3:84048724-84048743 Msa0479170:intron 40.0%
!! TCCATGATTTGCTACACATG+TGG + chr3_3:84048728-84048747 None:intergenic 40.0%
! TAACGGTAGAATTTGGTGAG+AGG - chr3_3:84048795-84048814 Msa0479170:intron 40.0%
! GATGTAAGAGAAGCTTTGAC+GGG - chr3_3:84048838-84048857 Msa0479170:intron 40.0%
TGGTGAAATCCAATAAGGGA+CGG + chr3_3:84048895-84048914 None:intergenic 40.0%
!! GCTCTATTGGAGTTGATAGT+TGG - chr3_3:84049262-84049281 Msa0479170:intron 40.0%
AACATAGTTCACATGTGGCA+TGG - chr3_3:84049333-84049352 Msa0479170:intron 40.0%
AACACATGGATATGAACTGC+AGG + chr3_3:84049446-84049465 None:intergenic 40.0%
!! TCATCTGATTGGCTTCTGAT+AGG - chr3_3:84049494-84049513 Msa0479170:intron 40.0%
TACAGCTCTTAAAGCTGATC+TGG - chr3_3:84049548-84049567 Msa0479170:intron 40.0%
TAAAACCTTCGGAAGAACGA+GGG + chr3_3:84049634-84049653 None:intergenic 40.0%
ATAAAACCTTCGGAAGAACG+AGG + chr3_3:84049635-84049654 None:intergenic 40.0%
! TCGTTCTTCCGAAGGTTTTA+TGG - chr3_3:84049634-84049653 Msa0479170:intron 40.0%
!! TTCTTCCGAAGGTTTTATGG+TGG - chr3_3:84049637-84049656 Msa0479170:intron 40.0%
TCATAGCACCTGCAACAAAA+GGG + chr3_3:84049713-84049732 None:intergenic 40.0%
ATCATAGCACCTGCAACAAA+AGG + chr3_3:84049714-84049733 None:intergenic 40.0%
CACATATAACTGCAGAGTAC+TGG - chr3_3:84049739-84049758 Msa0479170:intron 40.0%
TACAGTCACACAGAACACAT+AGG + chr3_3:84049825-84049844 None:intergenic 40.0%
CAGAAGATAGTGTAGCAAAG+AGG - chr3_3:84049952-84049971 Msa0479170:intron 40.0%
CAAGGCAAATTGACATCGTT+TGG - chr3_3:84050138-84050157 Msa0479170:CDS 40.0%
TAGGTGTTTCACGTGGTAAA+GGG - chr3_3:84050280-84050299 Msa0479170:CDS 40.0%
! AACTTTCATGAAAGGCACGA+AGG + chr3_3:84050317-84050336 None:intergenic 40.0%
GAGCTGCAAACTTTCATGAA+AGG + chr3_3:84050325-84050344 None:intergenic 40.0%
TGAAAGTTTGCAGCTCATTC+AGG - chr3_3:84050329-84050348 Msa0479170:intron 40.0%
TGTTAACAAAACCCTGACAG+TGG - chr3_3:84050479-84050498 Msa0479170:intron 40.0%
GCTCTGTTCCATAATCAACT+TGG + chr3_3:84050572-84050591 None:intergenic 40.0%
CAGAACTGAATCAATTCGGT+GGG + chr3_3:84050694-84050713 None:intergenic 40.0%
TTCAGTTCTGCCATCTTCAT+TGG - chr3_3:84050704-84050723 Msa0479170:CDS 40.0%
! TGGTATGAAGAGAAGCACAT+TGG + chr3_3:84050873-84050892 None:intergenic 40.0%
ACGAAATGCCATTGCTTCTA+TGG + chr3_3:84050925-84050944 None:intergenic 40.0%
TGGCTAGAAATCACACCTTA+AGG - chr3_3:84051126-84051145 Msa0479170:intron 40.0%
!! TTTTTCGACAGGACTGATAG+TGG + chr3_3:84051279-84051298 None:intergenic 40.0%
GTTTCCTTATGCATGCCAAT+TGG - chr3_3:84051412-84051431 Msa0479170:intron 40.0%
! CGTGGATACAACTGAGTTTT+AGG - chr3_3:84051468-84051487 Msa0479170:intron 40.0%
! TAGGCACTTGAATTTTCCCT+TGG - chr3_3:84051487-84051506 Msa0479170:intron 40.0%
GATAACATGGTAGAGAAAGG+TGG + chr3_3:84051625-84051644 None:intergenic 40.0%
AACGTAGGAATACCGAATCA+GGG - chr3_3:84051673-84051692 Msa0479170:intron 40.0%
CAACTTGGCTACTCCAATTT+CGG - chr3_3:84052065-84052084 Msa0479170:intron 40.0%
TAGAATTGCAGTGGTTCTCA+AGG - chr3_3:84052366-84052385 Msa0479170:CDS 40.0%
! TCTCAAGGAAGTTTTACGGA+AGG - chr3_3:84052381-84052400 Msa0479170:CDS 40.0%
TAATGGTGAAGTTCCTAAGC+TGG + chr3_3:84052426-84052445 None:intergenic 40.0%
CCATACAGAACAAAGGAAGT+GGG + chr3_3:84052513-84052532 None:intergenic 40.0%
TCCATACAGAACAAAGGAAG+TGG + chr3_3:84052514-84052533 None:intergenic 40.0%
TACGCATCCATACAGAACAA+AGG + chr3_3:84052520-84052539 None:intergenic 40.0%
! GTGTACATTTTCACTGGTAC+AGG + chr3_3:84052645-84052664 None:intergenic 40.0%
!! AAGGGAGTGTACATTTTCAC+TGG + chr3_3:84052651-84052670 None:intergenic 40.0%
TTCATGAAATCCAAGGGGCT+TGG + chr3_3:84048318-84048337 None:intergenic 45.0%
TCGCACGAACTATCTCTTTC+TGG - chr3_3:84048360-84048379 Msa0479170:CDS 45.0%
CACGAACTATCTCTTTCTGG+TGG - chr3_3:84048363-84048382 Msa0479170:CDS 45.0%
!! GCGTTTTTGTTGAGAGGTGT+TGG - chr3_3:84048408-84048427 Msa0479170:CDS 45.0%
GTATCCTGCTGAACATGATC+AGG - chr3_3:84048458-84048477 Msa0479170:intron 45.0%
AATGTTGGACAGAGGAGTTC+AGG - chr3_3:84048503-84048522 Msa0479170:intron 45.0%
TGGATATGAACTGCAGGTCT+AGG + chr3_3:84049440-84049459 None:intergenic 45.0%
ATACTGCTGTAGCTGGAAAG+TGG - chr3_3:84049580-84049599 Msa0479170:intron 45.0%
!! TGGTGGATTCATGAAATGCG+AGG - chr3_3:84049654-84049673 Msa0479170:intron 45.0%
! GGTGGATTCATGAAATGCGA+GGG - chr3_3:84049655-84049674 Msa0479170:intron 45.0%
!! GCGAGGGCATTATTTCAAAG+AGG - chr3_3:84049671-84049690 Msa0479170:CDS 45.0%
!! CTGCAGAGTACTGGAAGAAT+AGG - chr3_3:84049748-84049767 Msa0479170:intron 45.0%
! AGTACTGGAAGAATAGGACC+AGG - chr3_3:84049754-84049773 Msa0479170:intron 45.0%
GTACTGGAAGAATAGGACCA+GGG - chr3_3:84049755-84049774 Msa0479170:intron 45.0%
AATAGGACCAGGGAGAGTTT+AGG - chr3_3:84049765-84049784 Msa0479170:intron 45.0%
ATAGGACCAGGGAGAGTTTA+GGG - chr3_3:84049766-84049785 Msa0479170:intron 45.0%
AACATACCCTAAACTCTCCC+TGG + chr3_3:84049775-84049794 None:intergenic 45.0%
GGTTCTTCGTGAGCATGTTA+GGG - chr3_3:84049974-84049993 Msa0479170:intron 45.0%
GAGCATGTTAGGGAATCTCT+TGG - chr3_3:84049984-84050003 Msa0479170:intron 45.0%
ATCCAATGCGGTACATGACA+TGG - chr3_3:84050112-84050131 Msa0479170:CDS 45.0%
AACCATGTCATGTACCGCAT+TGG + chr3_3:84050117-84050136 None:intergenic 45.0%
GTAGGTGTTTCACGTGGTAA+AGG - chr3_3:84050279-84050298 Msa0479170:CDS 45.0%
! TCGGTGGGTGCAATATGTTT+TGG + chr3_3:84050679-84050698 None:intergenic 45.0%
GCAGAACTGAATCAATTCGG+TGG + chr3_3:84050695-84050714 None:intergenic 45.0%
GTTCTGCCATCTTCATTGGT+TGG - chr3_3:84050708-84050727 Msa0479170:intron 45.0%
GAAAGGCCAACCAATGAAGA+TGG + chr3_3:84050717-84050736 None:intergenic 45.0%
GCTTCTCTTCATACCAGTCA+CGG - chr3_3:84050877-84050896 Msa0479170:CDS 45.0%
CTTCTCTTCATACCAGTCAC+GGG - chr3_3:84050878-84050897 Msa0479170:CDS 45.0%
TTCTCTTCATACCAGTCACG+GGG - chr3_3:84050879-84050898 Msa0479170:CDS 45.0%
AAAGGGAAGGTCATATCGAC+AGG + chr3_3:84050989-84051008 None:intergenic 45.0%
! CTTTTGGTCAAGTAGCCTAG+TGG - chr3_3:84051106-84051125 Msa0479170:intron 45.0%
!! AGGTGTGATTTCTAGCCACT+AGG + chr3_3:84051124-84051143 None:intergenic 45.0%
GTAGCCAATTGGCATGCATA+AGG + chr3_3:84051419-84051438 None:intergenic 45.0%
ACATGGTAGAGAAAGGTGGA+GGG + chr3_3:84051621-84051640 None:intergenic 45.0%
AACATGGTAGAGAAAGGTGG+AGG + chr3_3:84051622-84051641 None:intergenic 45.0%
ATTCGGTATTCCTACGTTCG+TGG + chr3_3:84051671-84051690 None:intergenic 45.0%
GAACGTAGGAATACCGAATC+AGG - chr3_3:84051672-84051691 Msa0479170:intron 45.0%
ACGTAGGAATACCGAATCAG+GGG - chr3_3:84051674-84051693 Msa0479170:intron 45.0%
CATACATGTCTCCCCTGATT+CGG + chr3_3:84051688-84051707 None:intergenic 45.0%
CAGGGGAGACATGTATGTTT+CGG - chr3_3:84051691-84051710 Msa0479170:intron 45.0%
AGTTGGCTGTCAGATGATAC+AGG - chr3_3:84051819-84051838 Msa0479170:intron 45.0%
AGAGTCCTCATTAGTTCAGC+TGG - chr3_3:84051921-84051940 Msa0479170:intron 45.0%
ACTGTGGAGATCGTGGTTAA+TGG - chr3_3:84052187-84052206 Msa0479170:CDS 45.0%
CTGTGGAGATCGTGGTTAAT+GGG - chr3_3:84052188-84052207 Msa0479170:CDS 45.0%
ATCGTGGTTAATGGGACAAC+CGG - chr3_3:84052196-84052215 Msa0479170:CDS 45.0%
TGGCAAGTCATGTTGAGAAG+AGG - chr3_3:84052278-84052297 Msa0479170:CDS 45.0%
TGTTGAGAAGAGGCTGACTA+TGG - chr3_3:84052288-84052307 Msa0479170:CDS 45.0%
GTTGAGAAGAGGCTGACTAT+GGG - chr3_3:84052289-84052308 Msa0479170:CDS 45.0%
AGGCTGACTATGGGAAAGAA+AGG - chr3_3:84052298-84052317 Msa0479170:CDS 45.0%
GGCTGACTATGGGAAAGAAA+GGG - chr3_3:84052299-84052318 Msa0479170:CDS 45.0%
GGTATGAGAGAGTGAAAGAG+AGG - chr3_3:84052320-84052339 Msa0479170:CDS 45.0%
GAGAGTGAAAGAGAGGTTTC+TGG - chr3_3:84052327-84052346 Msa0479170:CDS 45.0%
! AGGAAGTTTTACGGAAGGCA+AGG - chr3_3:84052386-84052405 Msa0479170:CDS 45.0%
CCCACTTCCTTTGTTCTGTA+TGG - chr3_3:84052510-84052529 Msa0479170:five_prime_UTR 45.0%
TGTTCTGTATGGATGCGTAG+TGG - chr3_3:84052521-84052540 Msa0479170:five_prime_UTR 45.0%
GTTCTGTATGGATGCGTAGT+GGG - chr3_3:84052522-84052541 Msa0479170:five_prime_UTR 45.0%
!! TGCGTAGTGGGTTGATGTAT+AGG - chr3_3:84052534-84052553 Msa0479170:five_prime_UTR 45.0%
!!! ATTTATTATATATATTCTTT+TGG - chr3_3:84051090-84051109 Msa0479170:intron 5.0%
! GGCGAAGCATTCAGTAGCAT+TGG - chr3_3:84048128-84048147 Msa0479170:three_prime_UTR 50.0%
!! CTTCGTGGTGTTGCACGAAT+CGG + chr3_3:84048235-84048254 None:intergenic 50.0%
TTGTGCTTCGAAGGTCTTCG+TGG + chr3_3:84048250-84048269 None:intergenic 50.0%
CGAAGACCTTCGAAGCACAA+CGG - chr3_3:84048250-84048269 Msa0479170:CDS 50.0%
CTGATTCCGTTGTGCTTCGA+AGG + chr3_3:84048259-84048278 None:intergenic 50.0%
ACCAGATGGTGCATTTCCGA+CGG + chr3_3:84048295-84048314 None:intergenic 50.0%
! GGTAGAATTTGGTGAGAGGC+TGG - chr3_3:84048799-84048818 Msa0479170:intron 50.0%
! AGAGGTATAGTCGCAGAGGT+AGG + chr3_3:84049067-84049086 None:intergenic 50.0%
TAGACACAGAAGAGGGGCAA+GGG + chr3_3:84049167-84049186 None:intergenic 50.0%
ATAGACACAGAAGAGGGGCA+AGG + chr3_3:84049168-84049187 None:intergenic 50.0%
TGATAGGTCCTGCCTGCAAA+AGG - chr3_3:84049510-84049529 Msa0479170:intron 50.0%
! ACAGCCTTTTCGCCTTTTGC+AGG + chr3_3:84049525-84049544 None:intergenic 50.0%
AGTTACCCTCGTTCTTCCGA+AGG - chr3_3:84049626-84049645 Msa0479170:intron 50.0%
! AAGCACCTCCCTTTTGTTGC+AGG - chr3_3:84049702-84049721 Msa0479170:intron 50.0%
TAGCACCTGCAACAAAAGGG+AGG + chr3_3:84049710-84049729 None:intergenic 50.0%
GGGTTCTTCGTGAGCATGTT+AGG - chr3_3:84049973-84049992 Msa0479170:intron 50.0%
CGGTACATGACATGGTTGCA+AGG - chr3_3:84050120-84050139 Msa0479170:CDS 50.0%
TAGGTAAGGAGCCACTGTCA+GGG + chr3_3:84050493-84050512 None:intergenic 50.0%
CAAAACATTCTCCCCGTGAC+TGG + chr3_3:84050893-84050912 None:intergenic 50.0%
! CAGTCACGGGGAGAATGTTT+TGG - chr3_3:84050891-84050910 Msa0479170:CDS 50.0%
!! CACGGGGAGAATGTTTTGGA+AGG - chr3_3:84050895-84050914 Msa0479170:CDS 50.0%
AGTGAAGGACGTACCAGTAC+AGG + chr3_3:84050951-84050970 None:intergenic 50.0%
! TACACAGGGGTGTAGCCAAT+TGG + chr3_3:84051430-84051449 None:intergenic 50.0%
AGGTGGAGGGTTGAGCAAAT+GGG + chr3_3:84051608-84051627 None:intergenic 50.0%
AAGGTGGAGGGTTGAGCAAA+TGG + chr3_3:84051609-84051628 None:intergenic 50.0%
AGACATGCTTCCACGAACGT+AGG - chr3_3:84051658-84051677 Msa0479170:intron 50.0%
TTTGCTGCATCCTGAAGGCA+AGG - chr3_3:84052219-84052238 Msa0479170:CDS 50.0%
CTTCGCTCGATCGATCGATC+TGG - chr3_3:84047956-84047975 Msa0479170:three_prime_UTR 55.0%
CAGATTCACCCCTCTTCCGT+CGG - chr3_3:84048276-84048295 Msa0479170:CDS 55.0%
GTGCATTTCCGACGGAAGAG+GGG + chr3_3:84048287-84048306 None:intergenic 55.0%
GGTGCATTTCCGACGGAAGA+GGG + chr3_3:84048288-84048307 None:intergenic 55.0%
TGGTGCATTTCCGACGGAAG+AGG + chr3_3:84048289-84048308 None:intergenic 55.0%
TCCGTCGGAAATGCACCATC+TGG - chr3_3:84048291-84048310 Msa0479170:CDS 55.0%
! TCGCAGAGGTATAGTCGCAG+AGG + chr3_3:84049071-84049090 None:intergenic 55.0%
CAGTTGCTCTGTAGTCGCAG+AGG + chr3_3:84049085-84049104 None:intergenic 55.0%
! CCTTTTCGCCTTTTGCAGGC+AGG + chr3_3:84049521-84049540 None:intergenic 55.0%
CCTGCCTGCAAAAGGCGAAA+AGG - chr3_3:84049518-84049537 Msa0479170:intron 55.0%
TGCTGTAGCTGGAAAGTGGC+TGG - chr3_3:84049584-84049603 Msa0479170:intron 55.0%
GTGGCTGGATGCCGTCTTAA+AGG - chr3_3:84049599-84049618 Msa0479170:intron 55.0%
CTAGGTAAGGAGCCACTGTC+AGG + chr3_3:84050494-84050513 None:intergenic 55.0%
GGCATTTCGTCTGCCTGTAC+TGG - chr3_3:84050935-84050954 Msa0479170:CDS 55.0%
GGAGGGTTGAGCAAATGGGA+AGG + chr3_3:84051604-84051623 None:intergenic 55.0%
!! ACCGGTTTGCTGCATCCTGA+AGG - chr3_3:84052214-84052233 Msa0479170:CDS 55.0%
GCCTTCAGGATGCAGCAAAC+CGG + chr3_3:84052218-84052237 None:intergenic 55.0%
CTGCATCCTGAAGGCAAGGA+TGG - chr3_3:84052223-84052242 Msa0479170:CDS 55.0%
GTCACACCATCCTTGCCTTC+AGG + chr3_3:84052232-84052251 None:intergenic 55.0%
ACCATCTGGTCCAAGCCCCT+TGG - chr3_3:84048305-84048324 Msa0479170:CDS 60.0%
TCCAAGGGGCTTGGACCAGA+TGG + chr3_3:84048309-84048328 None:intergenic 60.0%
GTCGCAGAGGTAGGCACAAG+CGG + chr3_3:84049058-84049077 None:intergenic 60.0%
ACAGAAGAGGGGCAAGGGAC+GGG + chr3_3:84049162-84049181 None:intergenic 60.0%
CACAGAAGAGGGGCAAGGGA+CGG + chr3_3:84049163-84049182 None:intergenic 60.0%
!!! CTTTTGCAGGGCACTGCAGC+TGG - chr3_3:84052160-84052179 Msa0479170:CDS 60.0%
!! TGGAGGCACTGTGGAGATCG+TGG - chr3_3:84052180-84052199 Msa0479170:CDS 60.0%
AGAAGAGGGGCAAGGGACGG+GGG + chr3_3:84049160-84049179 None:intergenic 65.0%
CAGAAGAGGGGCAAGGGACG+GGG + chr3_3:84049161-84049180 None:intergenic 65.0%
!! TTGCAGGGCACTGCAGCTGG+AGG - chr3_3:84052163-84052182 Msa0479170:CDS 65.0%
!! CACTGCAGCTGGAGGCACTG+TGG - chr3_3:84052171-84052190 Msa0479170:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84047890 84052724 84047890 ID=Msa0479170;Name=Msa0479170
chr3_3 mRNA 84047890 84052724 84047890 ID=Msa0479170-mRNA-1;Parent=Msa0479170;Name=Msa0479170-mRNA-1;_AED=0.21;_eAED=0.21;_QI=236|1|1|1|1|1|6|307|466
chr3_3 exon 84047890 84048445 84047890 ID=Msa0479170-mRNA-1:exon:23828;Parent=Msa0479170-mRNA-1
chr3_3 exon 84049658 84049720 84049658 ID=Msa0479170-mRNA-1:exon:23827;Parent=Msa0479170-mRNA-1
chr3_3 exon 84050069 84050331 84050069 ID=Msa0479170-mRNA-1:exon:23826;Parent=Msa0479170-mRNA-1
chr3_3 exon 84050570 84050724 84050570 ID=Msa0479170-mRNA-1:exon:23825;Parent=Msa0479170-mRNA-1
chr3_3 exon 84050827 84051098 84050827 ID=Msa0479170-mRNA-1:exon:23824;Parent=Msa0479170-mRNA-1
chr3_3 exon 84052090 84052724 84052090 ID=Msa0479170-mRNA-1:exon:23823;Parent=Msa0479170-mRNA-1
chr3_3 five_prime_UTR 84052489 84052724 84052489 ID=Msa0479170-mRNA-1:five_prime_utr;Parent=Msa0479170-mRNA-1
chr3_3 CDS 84052090 84052488 84052090 ID=Msa0479170-mRNA-1:cds;Parent=Msa0479170-mRNA-1
chr3_3 CDS 84050827 84051098 84050827 ID=Msa0479170-mRNA-1:cds;Parent=Msa0479170-mRNA-1
chr3_3 CDS 84050570 84050724 84050570 ID=Msa0479170-mRNA-1:cds;Parent=Msa0479170-mRNA-1
chr3_3 CDS 84050069 84050331 84050069 ID=Msa0479170-mRNA-1:cds;Parent=Msa0479170-mRNA-1
chr3_3 CDS 84049658 84049720 84049658 ID=Msa0479170-mRNA-1:cds;Parent=Msa0479170-mRNA-1
chr3_3 CDS 84048197 84048445 84048197 ID=Msa0479170-mRNA-1:cds;Parent=Msa0479170-mRNA-1
chr3_3 three_prime_UTR 84047890 84048196 84047890 ID=Msa0479170-mRNA-1:three_prime_utr;Parent=Msa0479170-mRNA-1
Gene Sequence

>Msa0479170

ATGGCGAAGCATTCAGTAGCATTGGCGAAGAAAAGATGGCCGTTAATGTTACTAGCTTTCATATCAATTTCAACAGTGATGATTCTTTTCATGAGACCGAACAATTCCGATTCGTGCAACACCACGAAGACCTTCGAAGCACAACGGAATCAGATTCACCCCTCTTCCGTCGGAAATGCACCATCTGGTCCAAGCCCCTTGGATTTCATGAAATCGAAGCTAGTTCTCATGGTATCGCACGAACTATCTCTTTCTGGTGGACCTTTACTTTTGATGGAATTGGCGTTTTTGTTGAGAGGTGTTGGTTCTGATGTTGTTTGGATTACCAATCAGTATCCTGCTGAACATGATCAGGTTATTTATAGTTTGGAGAGTAAAATGTTGGACAGAGGAGTTCAGGTCCTGCCTGCAAAAGGCGAAAAGGCTGTAGATACAGCTCTTAAAGCTGATCTGGTCATTCTAAATACTGCTGTAGCTGGAAAGTGGCTGGATGCCGTCTTAAAGGAAAAAGTTACCCTCGTTCTTCCGAAGGTTTTATGGTGGATTCATGAAATGCGAGGGCATTATTTCAAAGAGGCATATGTCAAGCACCTCCCTTTTGTTGCAGGTGCTATGATTGATTCACATATAACTGCAGAGTACTGGAAGAATAGGACCAGGGAGAGTTTAGGAATTAAAATGCCTGAAACTTATGTTGTACATCTTGGAAATAGCAAGGAACTTATGGAAGTTGCAGAAGATAGTGTAGCAAAGAGGGTTCTTCGTGAGCATGTTAGGGAATCTCTTGGAGTAAGAAATGATGATCTACTTTTTGCCATCATAAATAGTGTTTCACGTGGTAAAGGGCAAAATCTATTCCTTCGTGCCTTTCATGAAAGTTTGCAGCTCATTCAGGAGAAGAAACTCAAGTTGCCATCTTTGCATGCTATACTTGTAGGGAGTGATATGAATGCTCAGACAAAGTTTGAAATGCAACTGCGCGAATTTGTTTCAGAGAAAAAGATTCAGGACCGTGTTCATTTTGTTAACAAAACCCTGACAGTGGCTCCTTACCTAGCTTCTATTGATGTTCTTGTTCAGAATTCTCAGTCACGGGGAGAATGTTTTGGAAGGATAACCATAGAAGCAATGGCATTTCGTCTGCCTGTACTGGGCACTGCAGCTGGAGGCACTGTGGAGATCGTGGTTAATGGGACAACCGGTTTGCTGCATCCTGAAGGCAAGGATGGTGTGACACCTCTTGCACATAACATTGTGAAATTGGCAAGTCATGTTGAGAAGAGGCTGACTATGGGAAAGAAAGGGTATGAGAGAGTGAAAGAGAGGTTTCTGGAGCACCATATGTCACATAGAATTGCAGTGGTTCTCAAGGAAGTTTTACGGAAGGCAAGGCACAATTAA

Protein sequence

>Msa0479170

MAKHSVALAKKRWPLMLLAFISISTVMILFMRPNNSDSCNTTKTFEAQRNQIHPSSVGNAPSGPSPLDFMKSKLVLMVSHELSLSGGPLLLMELAFLLRGVGSDVVWITNQYPAEHDQVIYSLESKMLDRGVQVLPAKGEKAVDTALKADLVILNTAVAGKWLDAVLKEKVTLVLPKVLWWIHEMRGHYFKEAYVKHLPFVAGAMIDSHITAEYWKNRTRESLGIKMPETYVVHLGNSKELMEVAEDSVAKRVLREHVRESLGVRNDDLLFAIINSVSRGKGQNLFLRAFHESLQLIQEKKLKLPSLHAILVGSDMNAQTKFEMQLREFVSEKKIQDRVHFVNKTLTVAPYLASIDVLVQNSQSRGECFGRITIEAMAFRLPVLGTAAGGTVEIVVNGTTGLLHPEGKDGVTPLAHNIVKLASHVEKRLTMGKKGYERVKERFLEHHMSHRIAVVLKEVLRKARHN*