AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464810 MtrunA17_Chr3g0141921 84.985 333 11 1 1 294 134 466 0.0 562
Msa1464810 MtrunA17_Chr3g0141911 42.353 170 59 6 123 279 24 167 2.74e-26 102
Msa1464810 MtrunA17_Chr4g0004211 36.022 186 112 2 106 288 476 657 1.66e-23 100
Msa1464810 MtrunA17_Chr2g0331991 46.610 118 62 1 173 289 592 709 5.90e-23 99.0
Msa1464810 MtrunA17_Chr2g0331991 30.319 188 100 8 1 165 310 489 8.25e-13 68.6
Msa1464810 MtrunA17_Chr4g0034861 46.154 117 63 0 173 289 516 632 8.96e-22 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464810 AT1G75420.2 73.716 331 48 1 1 292 43 373 9.55e-174 485
Msa1464810 AT1G75420.3 73.716 331 48 1 1 292 102 432 2.13e-173 487
Msa1464810 AT1G75420.1 73.716 331 48 1 1 292 128 458 2.28e-173 488
Msa1464810 AT1G19710.1 71.988 332 53 1 1 292 138 469 1.44e-167 474
Msa1464810 AT3G15940.2 45.669 127 69 0 163 289 570 696 4.39e-26 108
Msa1464810 AT3G15940.2 28.718 195 110 5 1 173 290 477 1.57e-11 65.1
Msa1464810 AT3G15940.1 45.669 127 69 0 163 289 570 696 4.39e-26 108
Msa1464810 AT3G15940.1 28.718 195 110 5 1 173 290 477 1.57e-11 65.1
Msa1464810 AT1G52420.1 43.902 123 69 0 167 289 547 669 3.10e-24 102
Msa1464810 AT1G52420.1 29.189 185 113 6 1 168 288 471 1.79e-11 65.1

Find 86 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCAATTTACAATTTAA+TGG 0.196158 tig0044640:-3661 Msa1464810:intergenic
TGCACATAACATTGTGAAAT+TGG 0.197530 tig0044640:+3479 Msa1464810:CDS
ACGAAATGCCATTGCTTCTA+TGG 0.222266 tig0044640:-2160 Msa1464810:intergenic
TAAATTGATTCCAAAGAAAA+AGG 0.249712 tig0044640:+3672 Msa1464810:three_prime_UTR
CCCACTTCCTTTGTTCTGTA+TGG 0.261172 tig0044640:+3731 Msa1464810:three_prime_UTR
GTGGCTGGATGCCGTCTTAA+AGG 0.261650 tig0044640:+835 Msa1464810:CDS
GGGTTCTTCGTGAGCATGTT+AGG 0.272900 tig0044640:+1209 Msa1464810:CDS
AATAGGACCAGGGAGAGTTT+AGG 0.282610 tig0044640:+1001 Msa1464810:CDS
TGGAAATAGCAAGGAACTTA+TGG 0.291694 tig0044640:+1159 Msa1464810:CDS
AGATGTACAACATAAGTTTC+AGG 0.314019 tig0044640:-1136 Msa1464810:intergenic
GAGAGTGAAAGAGAGGTTTC+TGG 0.327030 tig0044640:+3548 Msa1464810:CDS
ATAGGACCAGGGAGAGTTTA+GGG 0.339089 tig0044640:+1002 Msa1464810:CDS
GTCACACCATCCTTGCCTTC+AGG 0.359263 tig0044640:-3450 Msa1464810:intergenic
CAGTCACGGGGAGAATGTTT+TGG 0.367113 tig0044640:+2129 Msa1464810:intron
TGTTGAGAAGAGGCTGACTA+TGG 0.372554 tig0044640:+3509 Msa1464810:CDS
ACTGTGGAGATCGTGGTTAA+TGG 0.373098 tig0044640:+3408 Msa1464810:CDS
GAAACTTATGTTGTACATCT+TGG 0.390726 tig0044640:+1139 Msa1464810:CDS
CTGCAGAGTACTGGAAGAAT+AGG 0.404454 tig0044640:+984 Msa1464810:CDS
CTAGGTAAGGAGCCACTGTC+AGG 0.405315 tig0044640:-1726 Msa1464810:intergenic
CTGTGGAGATCGTGGTTAAT+GGG 0.408149 tig0044640:+3409 Msa1464810:CDS
ATCATAGCACCTGCAACAAA+AGG 0.424798 tig0044640:-947 Msa1464810:intergenic
TACAGCTCTTAAAGCTGATC+TGG 0.435509 tig0044640:+784 Msa1464810:CDS
ATCGTGGTTAATGGGACAAC+CGG 0.438418 tig0044640:+3417 Msa1464810:CDS
CAGGTGTTTCACGTGGTAAA+GGG 0.445043 tig0044640:+1516 Msa1464810:intron
GCAGGTGTTTCACGTGGTAA+AGG 0.451121 tig0044640:+1515 Msa1464810:intron
TAATGGTGAAGTTCCTAAGC+TGG 0.455786 tig0044640:-3644 Msa1464810:intergenic
ACAATTAAATTAACCAGCTT+AGG 0.455925 tig0044640:+3631 Msa1464810:exon
CCTGCCTGCAAAAGGTGAAA+AGG 0.463848 tig0044640:+754 Msa1464810:CDS
CACATATAACTGCAGAGTAC+TGG 0.470342 tig0044640:+975 Msa1464810:CDS
ATTCTAAATACTGCTGTAGC+TGG 0.475189 tig0044640:+809 Msa1464810:CDS
GGCATTTCGTCTGCCTGTAC+TGG 0.475966 tig0044640:+2173 Msa1464810:CDS
GCCTTCAGGATGCAGCAAAC+CGG 0.485028 tig0044640:-3436 Msa1464810:intergenic
TGCTGTAGCTGGAAAGTGGC+TGG 0.486096 tig0044640:+820 Msa1464810:CDS
TGATAGGTCCTGCCTGCAAA+AGG 0.486905 tig0044640:+746 None:intergenic
TGTTCTTGTTCAGAATTCTC+AGG 0.489341 tig0044640:+1759 Msa1464810:CDS
GGTTCTTCGTGAGCATGTTA+GGG 0.489601 tig0044640:+1210 Msa1464810:CDS
AGGCTGACTATGGGAAAGAA+AGG 0.492284 tig0044640:+3519 Msa1464810:CDS
TGAATCCACCATAAAACCTT+CGG 0.503051 tig0044640:-878 Msa1464810:intergenic
CAGAAGATAGTGTAGCAAAG+AGG 0.510374 tig0044640:+1188 Msa1464810:CDS
CTGCAATTCTATGTGACATA+TGG 0.519548 tig0044640:-3575 Msa1464810:intergenic
AGAAAATATGTATTACCCAT+TGG 0.523554 tig0044640:+3901 Msa1464810:three_prime_UTR
GGTATGAGAGAGTGAAAGAG+AGG 0.524664 tig0044640:+3541 Msa1464810:CDS
AGAAGATAGTGTAGCAAAGA+GGG 0.528791 tig0044640:+1189 Msa1464810:CDS
AGTTACCCTCGTTCTTCCGA+AGG 0.529697 tig0044640:+862 Msa1464810:CDS
GAGCATGTTAGGGAATCTCT+TGG 0.531903 tig0044640:+1220 Msa1464810:CDS
GTTCTGTATGGATGCGTAGT+GGG 0.534468 tig0044640:+3743 Msa1464810:three_prime_UTR
AGTGAAGGACGTACCAGTAC+AGG 0.541451 tig0044640:-2186 Msa1464810:intergenic
CAAGAACATCAATAGAAGCT+AGG 0.543899 tig0044640:-1744 Msa1464810:intergenic
AACATACCCTAAACTCTCCC+TGG 0.543946 tig0044640:-1008 Msa1464810:intergenic
TTCACAATGTTATGTGCAAG+AGG 0.545519 tig0044640:-3474 Msa1464810:intergenic
TCCATACAGAACAAAGGAAG+TGG 0.545757 tig0044640:-3732 Msa1464810:intergenic
TTGCAGGGCACTGCAGCTGG+AGG 0.549732 tig0044640:+3384 Msa1464810:intron
TAGTGACATACTATTTATGA+TGG 0.554440 tig0044640:-1269 Msa1464810:intergenic
CTGCATCCTGAAGGCAAGGA+TGG 0.559919 tig0044640:+3444 Msa1464810:CDS
TCATAGCACCTGCAACAAAA+GGG 0.561260 tig0044640:-946 Msa1464810:intergenic
TGCGTAGTGGGTTGATGTAT+AGG 0.567635 tig0044640:+3755 Msa1464810:three_prime_UTR
ACATCAATAGAAGCTAGGTA+AGG 0.568775 tig0044640:-1739 Msa1464810:intergenic
TAGAATTGCAGTGGTTCTCA+AGG 0.573300 tig0044640:+3587 Msa1464810:CDS
ACCGGTTTGCTGCATCCTGA+AGG 0.579599 tig0044640:+3435 Msa1464810:CDS
AGTACTGGAAGAATAGGACC+AGG 0.581747 tig0044640:+990 Msa1464810:CDS
GAGCTGCAAACTTTCATGAA+AGG 0.583871 tig0044640:-1558 Msa1464810:intergenic
AAGGATAACCATAGAAGCAA+TGG 0.585803 tig0044640:+2152 Msa1464810:CDS
GTTGAGAAGAGGCTGACTAT+GGG 0.594669 tig0044640:+3510 Msa1464810:CDS
GGCTGACTATGGGAAAGAAA+GGG 0.596427 tig0044640:+3520 Msa1464810:CDS
TTTGCTGCATCCTGAAGGCA+AGG 0.599998 tig0044640:+3440 Msa1464810:CDS
TGTTCTGTATGGATGCGTAG+TGG 0.606087 tig0044640:+3742 Msa1464810:three_prime_UTR
TGGTGGATTCATGAAATGCG+AGG 0.616138 tig0044640:+890 Msa1464810:CDS
TGGCAAGTCATGTTGAGAAG+AGG 0.617321 tig0044640:+3499 Msa1464810:CDS
CACTGCAGCTGGAGGCACTG+TGG 0.621939 tig0044640:+3392 Msa1464810:CDS
GCGAGGGCATTATTTCAAAG+AGG 0.622892 tig0044640:+907 Msa1464810:CDS
CCATACAGAACAAAGGAAGT+GGG 0.624963 tig0044640:-3731 Msa1464810:intergenic
TGGAGGCACTGTGGAGATCG+TGG 0.626460 tig0044640:+3401 Msa1464810:CDS
ATACTGCTGTAGCTGGAAAG+TGG 0.634836 tig0044640:+816 Msa1464810:CDS
TGTACATCTTGGAAATAGCA+AGG 0.635730 tig0044640:+1150 Msa1464810:CDS
GGTGGATTCATGAAATGCGA+GGG 0.637828 tig0044640:+891 Msa1464810:CDS
TGTTAACAAAACCCTGACAG+TGG 0.644245 tig0044640:+1714 Msa1464810:CDS
TAGGTAAGGAGCCACTGTCA+GGG 0.644824 tig0044640:-1725 Msa1464810:intergenic
AACTTTCATGAAAGGCACGA+AGG 0.649061 tig0044640:-1550 Msa1464810:intergenic
TTAAATGCAGGTGTTTCACG+TGG 0.656172 tig0044640:+1509 Msa1464810:intron
ATAAAACCTTCGGAAGAACG+AGG 0.660037 tig0044640:-868 Msa1464810:intergenic
TATGTCACATAGAATTGCAG+TGG 0.663579 tig0044640:+3578 Msa1464810:CDS
TACGCATCCATACAGAACAA+AGG 0.667502 tig0044640:-3738 Msa1464810:intergenic
TAAAACCTTCGGAAGAACGA+GGG 0.689246 tig0044640:-867 Msa1464810:intergenic
TAGCACCTGCAACAAAAGGG+AGG 0.690112 tig0044640:-943 Msa1464810:intergenic
TTCTCTTCATACCAGTCACG+GGG 0.693192 tig0044640:+2117 Msa1464810:intron
GTACTGGAAGAATAGGACCA+GGG 0.700205 tig0044640:+991 Msa1464810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTATTAAATGAATC+TGG - tig0044640:1035-1054 Msa1464810:intergenic 10.0%
!!! TAAAGTATTATTTTAGTTTT+TGG + tig0044640:2075-2094 Msa1464810:intron 10.0%
!!! AAAGTATTATTTTAGTTTTT+GGG + tig0044640:2076-2095 Msa1464810:intron 10.0%
!! ATGAAACCAAAATAATAAAA+AGG - tig0044640:2486-2505 Msa1464810:intergenic 15.0%
!!! ACTATTTTTTTACTAATTTG+TGG + tig0044640:2670-2689 Msa1464810:intron 15.0%
!! AAAAATAATACTGTTAAAGT+TGG + tig0044640:3022-3041 Msa1464810:intron 15.0%
!!! ATATTTTCTTCTCAAAAAAA+GGG - tig0044640:3890-3909 Msa1464810:intergenic 15.0%
!!! CATTTTAATTCTACAAAATC+AGG - tig0044640:1116-1135 Msa1464810:intergenic 20.0%
!!! TTTTGTTAACAAAATGAACA+CGG - tig0044640:1705-1724 Msa1464810:intergenic 20.0%
!! TAACACGTATAGATATAAAA+GGG - tig0044640:2244-2263 Msa1464810:intergenic 20.0%
!! TTAACACGTATAGATATAAA+AGG - tig0044640:2245-2264 Msa1464810:intergenic 20.0%
!!! TTTTTTAGATTTTTTTCGAC+AGG - tig0044640:2528-2547 Msa1464810:intergenic 20.0%
!! AGTAAAAAAATAGTTACACA+GGG - tig0044640:2664-2683 Msa1464810:intergenic 20.0%
!! TAGTAAAAAAATAGTTACAC+AGG - tig0044640:2665-2684 Msa1464810:intergenic 20.0%
!! ATGAAACTAATATTATTCTG+AGG + tig0044640:2954-2973 Msa1464810:intron 20.0%
!! GGAATCAATTTACAATTTAA+TGG - tig0044640:3664-3683 Msa1464810:intergenic 20.0%
!!! TAAATTGATTCCAAAGAAAA+AGG + tig0044640:3672-3691 Msa1464810:three_prime_UTR 20.0%
!!! CATATTTTCTTCTCAAAAAA+AGG - tig0044640:3891-3910 Msa1464810:intergenic 20.0%
! TAGTGACATACTATTTATGA+TGG - tig0044640:1272-1291 Msa1464810:intergenic 25.0%
! AATGAATATTGAATGAGTAC+AGG - tig0044640:1295-1314 Msa1464810:intergenic 25.0%
! AGGTACACACTATATTAAAT+TGG - tig0044640:1431-1450 Msa1464810:intergenic 25.0%
!! TTTTGCTAGTATGTATTCTT+AGG + tig0044640:1475-1494 Msa1464810:intron 25.0%
!!! ATACATTACCAAGTTGATTA+TGG + tig0044640:1796-1815 Msa1464810:intron 25.0%
!! TCAAACTTTTGACATTATGA+TGG + tig0044640:1842-1861 Msa1464810:intron 25.0%
!! TCATGCAATCTAAAGTTTAA+GGG - tig0044640:1871-1890 Msa1464810:intergenic 25.0%
!! ATCATGCAATCTAAAGTTTA+AGG - tig0044640:1872-1891 Msa1464810:intergenic 25.0%
!!! TGCAATATGTTTTGGAAATT+AGG - tig0044640:1906-1925 Msa1464810:intergenic 25.0%
! AATAATGAGAAAATTGACAC+AGG - tig0044640:2278-2297 Msa1464810:intergenic 25.0%
!! TGTCTGCCTTTTTATTATTT+TGG + tig0044640:2477-2496 Msa1464810:intron 25.0%
! GTAAAAAAATAGTTACACAG+GGG - tig0044640:2663-2682 Msa1464810:intergenic 25.0%
! AAGGAAAATTAGTGAATTTG+AGG - tig0044640:2805-2824 Msa1464810:intergenic 25.0%
! TTAAAACAACTAGGATAACA+TGG - tig0044640:2858-2877 Msa1464810:intergenic 25.0%
! AACTTGTGTAACATTAATTG+AGG + tig0044640:3083-3102 Msa1464810:intron 25.0%
! TTACAAATAGATTCCGAAAT+TGG - tig0044640:3302-3321 Msa1464810:intergenic 25.0%
! ACAATTAAATTAACCAGCTT+AGG + tig0044640:3631-3650 Msa1464810:exon 25.0%
! TAAAAAAAACAGTGTACCTT+CGG - tig0044640:3822-3841 Msa1464810:intergenic 25.0%
! AGAAAATATGTATTACCCAT+TGG + tig0044640:3901-3920 Msa1464810:three_prime_UTR 25.0%
!! GGTAACTTTTTCCTTTAAGA+CGG - tig0044640:849-868 Msa1464810:intergenic 30.0%
AGATGTACAACATAAGTTTC+AGG - tig0044640:1139-1158 Msa1464810:intergenic 30.0%
GAAACTTATGTTGTACATCT+TGG + tig0044640:1139-1158 Msa1464810:CDS 30.0%
! CATGATATTTTCATCCAATG+CGG + tig0044640:1336-1355 Msa1464810:intron 30.0%
TGTAAAAAAGTGAACAGAAG+AGG - tig0044640:1451-1470 Msa1464810:intergenic 30.0%
TAGTATGTATTCTTAGGTCT+AGG + tig0044640:1481-1500 Msa1464810:intron 30.0%
AGTATGTATTCTTAGGTCTA+GGG + tig0044640:1482-1501 Msa1464810:intron 30.0%
ACAACTATAGCATGCAAAAA+TGG - tig0044640:1608-1627 Msa1464810:intergenic 30.0%
! TTTTTGCATGCTATAGTTGT+AGG + tig0044640:1608-1627 Msa1464810:intron 30.0%
! TTTTGCATGCTATAGTTGTA+GGG + tig0044640:1609-1628 Msa1464810:intron 30.0%
TGTTTCAGAGAAAAAGATTC+AGG + tig0044640:1678-1697 Msa1464810:intron 30.0%
ACAAATCGATATGAGAAGAA+AGG - tig0044640:1972-1991 Msa1464810:intergenic 30.0%
!! ACAAAGTTTGCTAGTTTAGA+AGG + tig0044640:2014-2033 Msa1464810:intron 30.0%
!! CAAAGTTTGCTAGTTTAGAA+GGG + tig0044640:2015-2034 Msa1464810:intron 30.0%
ACAACTCAAATATCTAGTGA+AGG - tig0044640:2204-2223 Msa1464810:intergenic 30.0%
ACGTATAGATATAAAAGGGA+AGG - tig0044640:2240-2259 Msa1464810:intergenic 30.0%
!! AGCATGTCTTTAAAACAACT+AGG - tig0044640:2867-2886 Msa1464810:intergenic 30.0%
CAATCATGTTATCAAAGCAT+TGG - tig0044640:2999-3018 Msa1464810:intergenic 30.0%
AGTTGCAACTAACAAATGAA+TGG - tig0044640:3067-3086 Msa1464810:intergenic 30.0%
! GCTGACTTATAATCAATTCT+TGG + tig0044640:3107-3126 Msa1464810:intron 30.0%
! TTTCCGTTAAAAACTTTTGC+AGG + tig0044640:3368-3387 Msa1464810:intron 30.0%
! TTCCGTTAAAAACTTTTGCA+GGG + tig0044640:3369-3388 Msa1464810:intron 30.0%
TGCACATAACATTGTGAAAT+TGG + tig0044640:3479-3498 Msa1464810:CDS 30.0%
TTCCAAAGAAAAAGGAAGAA+TGG + tig0044640:3680-3699 Msa1464810:three_prime_UTR 30.0%
! AACCATTCTTCCTTTTTCTT+TGG - tig0044640:3685-3704 Msa1464810:intergenic 30.0%
AAGAAAAAGGAAGAATGGTT+CGG + tig0044640:3685-3704 Msa1464810:three_prime_UTR 30.0%
!!! ACATGTTTTTTATCTTAGCG+AGG - tig0044640:3799-3818 Msa1464810:intergenic 30.0%
AAGATAAAAAACATGTCCGA+AGG + tig0044640:3803-3822 Msa1464810:three_prime_UTR 30.0%
ATTCTAAATACTGCTGTAGC+TGG + tig0044640:809-828 Msa1464810:CDS 35.0%
TGAATCCACCATAAAACCTT+CGG - tig0044640:881-900 Msa1464810:intergenic 35.0%
TGTACATCTTGGAAATAGCA+AGG + tig0044640:1150-1169 Msa1464810:CDS 35.0%
TGGAAATAGCAAGGAACTTA+TGG + tig0044640:1159-1178 Msa1464810:CDS 35.0%
AGAAGATAGTGTAGCAAAGA+GGG + tig0044640:1189-1208 Msa1464810:CDS 35.0%
CAAGGCAAATTGACATTGTT+TGG + tig0044640:1374-1393 Msa1464810:intron 35.0%
!!! GTCTAGGGTTTTTTAAATGC+AGG + tig0044640:1497-1516 Msa1464810:intron 35.0%
TGCTCAGACAAAGTTTGAAA+TGG + tig0044640:1643-1662 Msa1464810:intron 35.0%
ACATCAATAGAAGCTAGGTA+AGG - tig0044640:1742-1761 Msa1464810:intergenic 35.0%
CAAGAACATCAATAGAAGCT+AGG - tig0044640:1747-1766 Msa1464810:intergenic 35.0%
TGTTCTTGTTCAGAATTCTC+AGG + tig0044640:1759-1778 Msa1464810:CDS 35.0%
AACTGAATCAATTCGGAAGT+GGG - tig0044640:1929-1948 Msa1464810:intergenic 35.0%
ATGGCAGAACTGAATCAATT+CGG - tig0044640:1936-1955 Msa1464810:intergenic 35.0%
! TGTTTGACTTCCATGATGTA+TGG + tig0044640:1989-2008 Msa1464810:intron 35.0%
AACTTTGTCTCCATACATCA+TGG - tig0044640:2002-2021 Msa1464810:intergenic 35.0%
TTTAGAAGGGACTTGAAGAT+AGG + tig0044640:2028-2047 Msa1464810:intron 35.0%
AAGGATAACCATAGAAGCAA+TGG + tig0044640:2152-2171 Msa1464810:CDS 35.0%
TTCCTTAAGGTGTGATTTCT+AGG - tig0044640:2369-2388 Msa1464810:intergenic 35.0%
GTATCATGTGCATTTCCTTA+AGG - tig0044640:2382-2401 Msa1464810:intergenic 35.0%
TAAGGAAACAACAACTGAGT+AGG - tig0044640:2621-2640 Msa1464810:intergenic 35.0%
! TGTGGATTCAACTGAGTTTT+AGG + tig0044640:2688-2707 Msa1464810:intron 35.0%
TATCTTCATTTCTTCGCCAA+GGG - tig0044640:2726-2745 Msa1464810:intergenic 35.0%
TTATCTTCATTTCTTCGCCA+AGG - tig0044640:2727-2746 Msa1464810:intergenic 35.0%
ACAAAAGAACAGTGCAAATG+TGG - tig0044640:2769-2788 Msa1464810:intergenic 35.0%
TAGGATAACATGGTAGAGAA+AGG - tig0044640:2848-2867 Msa1464810:intergenic 35.0%
AATAACCAGCTGAACTAATG+AGG - tig0044640:3149-3168 Msa1464810:intergenic 35.0%
!! TGTTTCTTGCTGTTTCAACT+TGG + tig0044640:3271-3290 Msa1464810:intron 35.0%
! TGCCCTGCAAAAGTTTTTAA+CGG - tig0044640:3374-3393 Msa1464810:intergenic 35.0%
TTCACAATGTTATGTGCAAG+AGG - tig0044640:3477-3496 Msa1464810:intergenic 35.0%
CTGCAATTCTATGTGACATA+TGG - tig0044640:3578-3597 Msa1464810:intergenic 35.0%
TATGTCACATAGAATTGCAG+TGG + tig0044640:3578-3597 Msa1464810:CDS 35.0%
! TGGTTCTCAAGGAAGTTTTA+CGG + tig0044640:3598-3617 Msa1464810:CDS 35.0%
TACAGCTCTTAAAGCTGATC+TGG + tig0044640:784-803 Msa1464810:CDS 40.0%
TAAAACCTTCGGAAGAACGA+GGG - tig0044640:870-889 Msa1464810:intergenic 40.0%
ATAAAACCTTCGGAAGAACG+AGG - tig0044640:871-890 Msa1464810:intergenic 40.0%
! TCGTTCTTCCGAAGGTTTTA+TGG + tig0044640:870-889 Msa1464810:CDS 40.0%
!! TTCTTCCGAAGGTTTTATGG+TGG + tig0044640:873-892 Msa1464810:CDS 40.0%
TCATAGCACCTGCAACAAAA+GGG - tig0044640:949-968 Msa1464810:intergenic 40.0%
ATCATAGCACCTGCAACAAA+AGG - tig0044640:950-969 Msa1464810:intergenic 40.0%
CACATATAACTGCAGAGTAC+TGG + tig0044640:975-994 Msa1464810:CDS 40.0%
TACAGTCACACAGAACACAT+AGG - tig0044640:1061-1080 Msa1464810:intergenic 40.0%
CAGAAGATAGTGTAGCAAAG+AGG + tig0044640:1188-1207 Msa1464810:CDS 40.0%
TTAAATGCAGGTGTTTCACG+TGG + tig0044640:1509-1528 Msa1464810:intron 40.0%
! AACTTTCATGAAAGGCACGA+AGG - tig0044640:1553-1572 Msa1464810:intergenic 40.0%
GAGCTGCAAACTTTCATGAA+AGG - tig0044640:1561-1580 Msa1464810:intergenic 40.0%
TGAAAGTTTGCAGCTCATTC+AGG + tig0044640:1565-1584 Msa1464810:intron 40.0%
TGTTAACAAAACCCTGACAG+TGG + tig0044640:1714-1733 Msa1464810:CDS 40.0%
GCTCTGTTCCATAATCAACT+TGG - tig0044640:1807-1826 Msa1464810:intergenic 40.0%
! GAAGTGGGTGCAATATGTTT+TGG - tig0044640:1914-1933 Msa1464810:intergenic 40.0%
GAACTGAATCAATTCGGAAG+TGG - tig0044640:1930-1949 Msa1464810:intergenic 40.0%
TTCAGTTCTGCCATCTTCAT+TGG + tig0044640:1942-1961 Msa1464810:intron 40.0%
! TGGTATGAAGAGAAGCACAT+TGG - tig0044640:2111-2130 Msa1464810:intergenic 40.0%
ACGAAATGCCATTGCTTCTA+TGG - tig0044640:2163-2182 Msa1464810:intergenic 40.0%
TGCCTAGAAATCACACCTTA+AGG + tig0044640:2364-2383 Msa1464810:intron 40.0%
!! TTTTTCGACAGGACTGATAG+TGG - tig0044640:2517-2536 Msa1464810:intergenic 40.0%
GTTTCCTTATGCATGCCAAT+TGG + tig0044640:2632-2651 Msa1464810:intron 40.0%
! TAGGCACTTGAATTTTCCCT+TGG + tig0044640:2707-2726 Msa1464810:intron 40.0%
GATAACATGGTAGAGAAAGG+TGG - tig0044640:2845-2864 Msa1464810:intergenic 40.0%
AACGTAGGAATACCGAATCA+GGG + tig0044640:2893-2912 Msa1464810:intron 40.0%
CAACTTGGCTACTCCAATTT+CGG + tig0044640:3286-3305 Msa1464810:intron 40.0%
TAGAATTGCAGTGGTTCTCA+AGG + tig0044640:3587-3606 Msa1464810:CDS 40.0%
! TCTCAAGGAAGTTTTACGGA+AGG + tig0044640:3602-3621 Msa1464810:CDS 40.0%
TAATGGTGAAGTTCCTAAGC+TGG - tig0044640:3647-3666 Msa1464810:intergenic 40.0%
CCATACAGAACAAAGGAAGT+GGG - tig0044640:3734-3753 Msa1464810:intergenic 40.0%
TCCATACAGAACAAAGGAAG+TGG - tig0044640:3735-3754 Msa1464810:intergenic 40.0%
TACGCATCCATACAGAACAA+AGG - tig0044640:3741-3760 Msa1464810:intergenic 40.0%
! GTGTACATTTTCACTGGTAC+AGG - tig0044640:3866-3885 Msa1464810:intergenic 40.0%
!! AAGGGAGTGTACATTTTCAC+TGG - tig0044640:3872-3891 Msa1464810:intergenic 40.0%
! ACAGCCTTTTCACCTTTTGC+AGG - tig0044640:761-780 Msa1464810:intergenic 45.0%
ATACTGCTGTAGCTGGAAAG+TGG + tig0044640:816-835 Msa1464810:CDS 45.0%
!! TGGTGGATTCATGAAATGCG+AGG + tig0044640:890-909 Msa1464810:CDS 45.0%
! GGTGGATTCATGAAATGCGA+GGG + tig0044640:891-910 Msa1464810:CDS 45.0%
!! GCGAGGGCATTATTTCAAAG+AGG + tig0044640:907-926 Msa1464810:CDS 45.0%
!! CTGCAGAGTACTGGAAGAAT+AGG + tig0044640:984-1003 Msa1464810:CDS 45.0%
! AGTACTGGAAGAATAGGACC+AGG + tig0044640:990-1009 Msa1464810:CDS 45.0%
GTACTGGAAGAATAGGACCA+GGG + tig0044640:991-1010 Msa1464810:CDS 45.0%
AATAGGACCAGGGAGAGTTT+AGG + tig0044640:1001-1020 Msa1464810:CDS 45.0%
ATAGGACCAGGGAGAGTTTA+GGG + tig0044640:1002-1021 Msa1464810:CDS 45.0%
AACATACCCTAAACTCTCCC+TGG - tig0044640:1011-1030 Msa1464810:intergenic 45.0%
GGTTCTTCGTGAGCATGTTA+GGG + tig0044640:1210-1229 Msa1464810:CDS 45.0%
GAGCATGTTAGGGAATCTCT+TGG + tig0044640:1220-1239 Msa1464810:CDS 45.0%
ATCCAATGCGGTACATGACA+TGG + tig0044640:1348-1367 Msa1464810:intron 45.0%
AACCATGTCATGTACCGCAT+TGG - tig0044640:1353-1372 Msa1464810:intergenic 45.0%
CAGGTGTTTCACGTGGTAAA+GGG + tig0044640:1516-1535 Msa1464810:intron 45.0%
GTTCTGCCATCTTCATTGGT+TGG + tig0044640:1946-1965 Msa1464810:intron 45.0%
GAAAGGCCAACCAATGAAGA+TGG - tig0044640:1955-1974 Msa1464810:intergenic 45.0%
GCTTCTCTTCATACCAGTCA+CGG + tig0044640:2115-2134 Msa1464810:intron 45.0%
CTTCTCTTCATACCAGTCAC+GGG + tig0044640:2116-2135 Msa1464810:intron 45.0%
TTCTCTTCATACCAGTCACG+GGG + tig0044640:2117-2136 Msa1464810:intron 45.0%
AAAGGGAAGGTCATATCGAC+AGG - tig0044640:2227-2246 Msa1464810:intergenic 45.0%
! AGGTGTGATTTCTAGGCACT+AGG - tig0044640:2362-2381 Msa1464810:intergenic 45.0%
GTAGCCAATTGGCATGCATA+AGG - tig0044640:2639-2658 Msa1464810:intergenic 45.0%
ACATGGTAGAGAAAGGTGGA+GGG - tig0044640:2841-2860 Msa1464810:intergenic 45.0%
AACATGGTAGAGAAAGGTGG+AGG - tig0044640:2842-2861 Msa1464810:intergenic 45.0%
ATTCGGTATTCCTACGTTCG+TGG - tig0044640:2891-2910 Msa1464810:intergenic 45.0%
GAACGTAGGAATACCGAATC+AGG + tig0044640:2892-2911 Msa1464810:intron 45.0%
ACGTAGGAATACCGAATCAG+GGG + tig0044640:2894-2913 Msa1464810:intron 45.0%
CATACATGTCTCCCCTGATT+CGG - tig0044640:2908-2927 Msa1464810:intergenic 45.0%
CAGGGGAGACATGTATGTTT+CGG + tig0044640:2911-2930 Msa1464810:intron 45.0%
AGTTGGCTGTCAGATGATAC+AGG + tig0044640:3039-3058 Msa1464810:intron 45.0%
AGAGTCCTCATTAGTTCAGC+TGG + tig0044640:3141-3160 Msa1464810:intron 45.0%
ACTGTGGAGATCGTGGTTAA+TGG + tig0044640:3408-3427 Msa1464810:CDS 45.0%
CTGTGGAGATCGTGGTTAAT+GGG + tig0044640:3409-3428 Msa1464810:CDS 45.0%
ATCGTGGTTAATGGGACAAC+CGG + tig0044640:3417-3436 Msa1464810:CDS 45.0%
TGGCAAGTCATGTTGAGAAG+AGG + tig0044640:3499-3518 Msa1464810:CDS 45.0%
TGTTGAGAAGAGGCTGACTA+TGG + tig0044640:3509-3528 Msa1464810:CDS 45.0%
GTTGAGAAGAGGCTGACTAT+GGG + tig0044640:3510-3529 Msa1464810:CDS 45.0%
AGGCTGACTATGGGAAAGAA+AGG + tig0044640:3519-3538 Msa1464810:CDS 45.0%
GGCTGACTATGGGAAAGAAA+GGG + tig0044640:3520-3539 Msa1464810:CDS 45.0%
GGTATGAGAGAGTGAAAGAG+AGG + tig0044640:3541-3560 Msa1464810:CDS 45.0%
GAGAGTGAAAGAGAGGTTTC+TGG + tig0044640:3548-3567 Msa1464810:CDS 45.0%
! AGGAAGTTTTACGGAAGGCA+AGG + tig0044640:3607-3626 Msa1464810:CDS 45.0%
CCCACTTCCTTTGTTCTGTA+TGG + tig0044640:3731-3750 Msa1464810:three_prime_UTR 45.0%
TGTTCTGTATGGATGCGTAG+TGG + tig0044640:3742-3761 Msa1464810:three_prime_UTR 45.0%
GTTCTGTATGGATGCGTAGT+GGG + tig0044640:3743-3762 Msa1464810:three_prime_UTR 45.0%
!! TGCGTAGTGGGTTGATGTAT+AGG + tig0044640:3755-3774 Msa1464810:three_prime_UTR 45.0%
!!! ATTTATTATATATATTCTTT+TGG + tig0044640:2328-2347 Msa1464810:intron 5.0%
! CCTTTTCACCTTTTGCAGGC+AGG - tig0044640:757-776 Msa0505480:intergenic 50.0%
CCTGCCTGCAAAAGGTGAAA+AGG + tig0044640:754-773 Msa1464810:CDS 50.0%
AGTTACCCTCGTTCTTCCGA+AGG + tig0044640:862-881 Msa1464810:CDS 50.0%
! AAGCACCTCCCTTTTGTTGC+AGG + tig0044640:938-957 Msa1464810:CDS 50.0%
TAGCACCTGCAACAAAAGGG+AGG - tig0044640:946-965 Msa1464810:intergenic 50.0%
GGGTTCTTCGTGAGCATGTT+AGG + tig0044640:1209-1228 Msa1464810:CDS 50.0%
CGGTACATGACATGGTTGCA+AGG + tig0044640:1356-1375 Msa1464810:intron 50.0%
GCAGGTGTTTCACGTGGTAA+AGG + tig0044640:1515-1534 Msa1464810:intron 50.0%
TAGGTAAGGAGCCACTGTCA+GGG - tig0044640:1728-1747 Msa1464810:intergenic 50.0%
CAAAACATTCTCCCCGTGAC+TGG - tig0044640:2131-2150 Msa1464810:intergenic 50.0%
! CAGTCACGGGGAGAATGTTT+TGG + tig0044640:2129-2148 Msa1464810:intron 50.0%
!! CACGGGGAGAATGTTTTGGA+AGG + tig0044640:2133-2152 Msa1464810:CDS 50.0%
AGTGAAGGACGTACCAGTAC+AGG - tig0044640:2189-2208 Msa1464810:intergenic 50.0%
! TACACAGGGGTGTAGCCAAT+TGG - tig0044640:2650-2669 Msa1464810:intergenic 50.0%
AGGTGGAGGGTTGAGCATAT+GGG - tig0044640:2828-2847 Msa1464810:intergenic 50.0%
AAGGTGGAGGGTTGAGCATA+TGG - tig0044640:2829-2848 Msa1464810:intergenic 50.0%
AGACATGCTTCCACGAACGT+AGG + tig0044640:2878-2897 Msa1464810:intron 50.0%
TTTGCTGCATCCTGAAGGCA+AGG + tig0044640:3440-3459 Msa1464810:CDS 50.0%
TGCTGTAGCTGGAAAGTGGC+TGG + tig0044640:820-839 Msa1464810:CDS 55.0%
GTGGCTGGATGCCGTCTTAA+AGG + tig0044640:835-854 Msa1464810:CDS 55.0%
CTAGGTAAGGAGCCACTGTC+AGG - tig0044640:1729-1748 Msa1464810:intergenic 55.0%
GGCATTTCGTCTGCCTGTAC+TGG + tig0044640:2173-2192 Msa1464810:CDS 55.0%
GGAGGGTTGAGCATATGGGA+AGG - tig0044640:2824-2843 Msa1464810:intergenic 55.0%
!! ACCGGTTTGCTGCATCCTGA+AGG + tig0044640:3435-3454 Msa1464810:CDS 55.0%
GCCTTCAGGATGCAGCAAAC+CGG - tig0044640:3439-3458 Msa1464810:intergenic 55.0%
CTGCATCCTGAAGGCAAGGA+TGG + tig0044640:3444-3463 Msa1464810:CDS 55.0%
GTCACACCATCCTTGCCTTC+AGG - tig0044640:3453-3472 Msa1464810:intergenic 55.0%
!!! CTTTTGCAGGGCACTGCAGC+TGG + tig0044640:3381-3400 Msa1464810:intron 60.0%
!! TGGAGGCACTGTGGAGATCG+TGG + tig0044640:3401-3420 Msa1464810:CDS 60.0%
!! TTGCAGGGCACTGCAGCTGG+AGG + tig0044640:3384-3403 Msa1464810:intron 65.0%
!! CACTGCAGCTGGAGGCACTG+TGG + tig0044640:3392-3411 Msa1464810:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0044640 gene 752 3925 752 ID=Msa1464810;Name=Msa1464810
tig0044640 mRNA 752 3925 752 ID=Msa1464810-mRNA-1;Parent=Msa1464810;Name=Msa1464810-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.8|0.5|1|1|1|6|287|294
tig0044640 exon 752 1023 752 ID=Msa1464810-mRNA-1:exon:24585;Parent=Msa1464810-mRNA-1
tig0044640 exon 1126 1280 1126 ID=Msa1464810-mRNA-1:exon:24586;Parent=Msa1464810-mRNA-1
tig0044640 exon 1519 1569 1519 ID=Msa1464810-mRNA-1:exon:24587;Parent=Msa1464810-mRNA-1
tig0044640 exon 1686 1780 1686 ID=Msa1464810-mRNA-1:exon:24588;Parent=Msa1464810-mRNA-1
tig0044640 exon 2132 2194 2132 ID=Msa1464810-mRNA-1:exon:24589;Parent=Msa1464810-mRNA-1
tig0044640 exon 3390 3925 3390 ID=Msa1464810-mRNA-1:exon:24590;Parent=Msa1464810-mRNA-1
tig0044640 CDS 752 1023 752 ID=Msa1464810-mRNA-1:cds;Parent=Msa1464810-mRNA-1
tig0044640 CDS 1126 1280 1126 ID=Msa1464810-mRNA-1:cds;Parent=Msa1464810-mRNA-1
tig0044640 CDS 1519 1569 1519 ID=Msa1464810-mRNA-1:cds;Parent=Msa1464810-mRNA-1
tig0044640 CDS 1686 1780 1686 ID=Msa1464810-mRNA-1:cds;Parent=Msa1464810-mRNA-1
tig0044640 CDS 2132 2194 2132 ID=Msa1464810-mRNA-1:cds;Parent=Msa1464810-mRNA-1
tig0044640 CDS 3390 3638 3390 ID=Msa1464810-mRNA-1:cds;Parent=Msa1464810-mRNA-1
tig0044640 three_prime_UTR 3639 3925 3639 ID=Msa1464810-mRNA-1:three_prime_utr;Parent=Msa1464810-mRNA-1
Gene Sequence

>Msa1464810

GTCCTGCCTGCAAAAGGTGAAAAGGCTGTAGATACAGCTCTTAAAGCTGATCTGGTCATTCTAAATACTGCTGTAGCTGGAAAGTGGCTGGATGCCGTCTTAAAGGAAAAAGTTACCCTCGTTCTTCCGAAGGTTTTATGGTGGATTCATGAAATGCGAGGGCATTATTTCAAAGAGGCATATGTCAAGCACCTCCCTTTTGTTGCAGGTGCTATGATTGATTCACATATAACTGCAGAGTACTGGAAGAATAGGACCAGGGAGAGTTTAGGAATTAAAATGCCTGAAACTTATGTTGTACATCTTGGAAATAGCAAGGAACTTATGGAAGTTGCAGAAGATAGTGTAGCAAAGAGGGTTCTTCGTGAGCATGTTAGGGAATCTCTTGGAGTAAGAAATGATGATCTACTTTTTGCCATCATAAATAGTGTTTCACGTGGTAAAGGGCAAAATCTATTCCTTCGTGCCTTTCATGAAAAGAAAAAGATTCAGGACCGTGTTCATTTTGTTAACAAAACCCTGACAGTGGCTCCTTACCTAGCTTCTATTGATGTTCTTGTTCAGAATTCTCAGTCACGGGGAGAATGTTTTGGAAGGATAACCATAGAAGCAATGGCATTTCGTCTGCCTGTACTGGGCACTGCAGCTGGAGGCACTGTGGAGATCGTGGTTAATGGGACAACCGGTTTGCTGCATCCTGAAGGCAAGGATGGTGTGACACCTCTTGCACATAACATTGTGAAATTGGCAAGTCATGTTGAGAAGAGGCTGACTATGGGAAAGAAAGGGTATGAGAGAGTGAAAGAGAGGTTTCTGGAGCACCATATGTCACATAGAATTGCAGTGGTTCTCAAGGAAGTTTTACGGAAGGCAAGGCACAATTAA

Protein sequence

>Msa1464810

VLPAKGEKAVDTALKADLVILNTAVAGKWLDAVLKEKVTLVLPKVLWWIHEMRGHYFKEAYVKHLPFVAGAMIDSHITAEYWKNRTRESLGIKMPETYVVHLGNSKELMEVAEDSVAKRVLREHVRESLGVRNDDLLFAIINSVSRGKGQNLFLRAFHEKKKIQDRVHFVNKTLTVAPYLASIDVLVQNSQSRGECFGRITIEAMAFRLPVLGTAAGGTVEIVVNGTTGLLHPEGKDGVTPLAHNIVKLASHVEKRLTMGKKGYERVKERFLEHHMSHRIAVVLKEVLRKARHN*