Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840040 | AES95526.1 | 91.501 | 553 | 44 | 2 | 1 | 553 | 1 | 550 | 0.0 | 1011 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840040 | sp|P29057|HMDH1_HEVBR | 74.725 | 546 | 110 | 4 | 32 | 553 | 34 | 575 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840040 | G7K5H6 | 91.501 | 553 | 44 | 2 | 1 | 553 | 1 | 550 | 0.0 | 1011 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0801680 | Msa0840040 | 0.812049 | 5.154273e-51 | -8.615850e-47 |
| Msa0801690 | Msa0840040 | 0.882796 | 7.711454e-71 | -8.615850e-47 |
| Msa0840040 | Msa0840050 | 0.883653 | 3.739194e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840040 | MtrunA17_Chr5g0442831 | 89.873 | 553 | 48 | 4 | 1 | 553 | 1 | 545 | 0.0 | 1008 |
| Msa0840040 | MtrunA17_Chr5g0409021 | 92.043 | 553 | 33 | 4 | 1 | 553 | 1 | 542 | 0.0 | 998 |
| Msa0840040 | MtrunA17_Chr5g0408991 | 92.043 | 553 | 33 | 4 | 1 | 553 | 1 | 542 | 0.0 | 998 |
| Msa0840040 | MtrunA17_Chr5g0408981 | 92.043 | 553 | 33 | 4 | 1 | 553 | 1 | 542 | 0.0 | 998 |
| Msa0840040 | MtrunA17_Chr5g0409011 | 92.043 | 553 | 33 | 4 | 1 | 553 | 1 | 542 | 0.0 | 998 |
| Msa0840040 | MtrunA17_Chr5g0409001 | 91.863 | 553 | 34 | 4 | 1 | 553 | 1 | 542 | 0.0 | 998 |
| Msa0840040 | MtrunA17_Chr5g0409031 | 91.501 | 553 | 44 | 2 | 1 | 553 | 1 | 550 | 0.0 | 984 |
| Msa0840040 | MtrunA17_Chr5g0407521 | 83.101 | 574 | 69 | 8 | 1 | 553 | 1 | 567 | 0.0 | 943 |
| Msa0840040 | MtrunA17_Chr8g0370001 | 77.431 | 545 | 94 | 6 | 32 | 553 | 45 | 583 | 0.0 | 850 |
| Msa0840040 | MtrunA17_Chr5g0440371 | 74.858 | 529 | 120 | 3 | 32 | 553 | 43 | 565 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840040 | AT1G76490.1 | 72.045 | 533 | 129 | 4 | 32 | 549 | 105 | 632 | 0.0 | 803 |
| Msa0840040 | AT2G17370.1 | 70.937 | 523 | 141 | 5 | 32 | 548 | 37 | 554 | 0.0 | 766 |
Find 143 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATTTACTTGGTGTTAA+AGG | 0.164546 | 5_4:-15599657 | Msa0840040:CDS |
| TTTGACTACGATTCTATATT+AGG | 0.222070 | 5_4:-15600663 | Msa0840040:CDS |
| TGTAAAGCTATTTATGTTTC+CGG | 0.222759 | 5_4:-15600504 | Msa0840040:CDS |
| TTTCCTGATATGGATGTTAT+TGG | 0.244006 | 5_4:-15600083 | Msa0840040:CDS |
| TTTCAACTGAGAAGCTCTTT+TGG | 0.287869 | 5_4:+15600416 | None:intergenic |
| ATGGATGTTATTGGTATATC+TGG | 0.316409 | 5_4:-15600074 | Msa0840040:CDS |
| CCGGTCCTTTGTTGCTCGAC+GGG | 0.332695 | 5_4:-15600590 | Msa0840040:CDS |
| ATCTACCTTATCACCTTCTT+CGG | 0.334219 | 5_4:-15600981 | Msa0840040:CDS |
| GAAGACTAGTGTGGAGTCTT+TGG | 0.337986 | 5_4:-15599943 | Msa0840040:CDS |
| GAAGGTGATAAGGTAGATAA+AGG | 0.348732 | 5_4:+15600986 | None:intergenic |
| AATAGCTTTACAGCCTCTAT+TGG | 0.352070 | 5_4:+15600515 | None:intergenic |
| CAGATTCCGGTAGGTGTTGC+CGG | 0.353294 | 5_4:-15600609 | Msa0840040:CDS |
| AGACTCCAGGAGCAAATTCC+AGG | 0.354489 | 5_4:-15599623 | Msa0840040:CDS |
| TATTGTTTCTGCAATTTACT+TGG | 0.362082 | 5_4:-15599841 | Msa0840040:CDS |
| CAAAGAAAACAACATTTGTT+AGG | 0.362141 | 5_4:+15601132 | None:intergenic |
| AGAAAGCTGCGGCAGTGAAT+TGG | 0.369757 | 5_4:-15600034 | Msa0840040:CDS |
| CAAGCAGTTGAGAGAGTTAC+CGG | 0.376087 | 5_4:-15600717 | Msa0840040:CDS |
| GGTTGTCGGTGCGGTGGTAT+CGG | 0.377254 | 5_4:-15600808 | Msa0840040:CDS |
| TCAGCCATGGCTGGTGCTCT+TGG | 0.377924 | 5_4:-15599888 | Msa0840040:CDS |
| GGCAACCACCGAAGGTTGTT+TGG | 0.379682 | 5_4:-15600547 | Msa0840040:CDS |
| GATAGGGTTTGTTCAGATTC+CGG | 0.381461 | 5_4:-15600622 | Msa0840040:CDS |
| AGTTGCCTGGAATTTGCTCC+TGG | 0.383258 | 5_4:+15599618 | None:intergenic |
| ACAAAGTATTAAAGCGACTA+TGG | 0.395740 | 5_4:-15600213 | Msa0840040:CDS |
| AACATCCATATCAGGAAAAT+CGG | 0.398370 | 5_4:+15600088 | None:intergenic |
| CCTACTTTCTTCTCATCAAC+AGG | 0.402756 | 5_4:-15601091 | Msa0840040:CDS |
| CTTCTTCATCATTGTAATGA+AGG | 0.407163 | 5_4:+15600946 | None:intergenic |
| ATACCAATAACATCCATATC+AGG | 0.416453 | 5_4:+15600080 | None:intergenic |
| GTAGCTGGTTCAGTCCTTGC+AGG | 0.419905 | 5_4:-15599585 | Msa0840040:CDS |
| TAAACCTTCAAGTGACCTTC+CGG | 0.419965 | 5_4:+15600698 | None:intergenic |
| GTTGTCGGTGCGGTGGTATC+GGG | 0.422716 | 5_4:-15600807 | Msa0840040:CDS |
| CACAACGGCGGAAGCACCAC+CGG | 0.431698 | 5_4:+15600485 | None:intergenic |
| ACTAGATTCACTTGTTCAAC+GGG | 0.437170 | 5_4:-15600173 | Msa0840040:CDS |
| AATAACAAAGGTAGCTTCTT+CGG | 0.439554 | 5_4:+15600879 | None:intergenic |
| CTCATGTCTGCAATTGCAGC+CGG | 0.440156 | 5_4:-15599552 | Msa0840040:CDS |
| AGGAGCAAATTCCAGGCAAC+TGG | 0.448129 | 5_4:-15599616 | Msa0840040:CDS |
| TGTTCAACGGGTGATGCAAT+GGG | 0.450595 | 5_4:-15600161 | Msa0840040:CDS |
| TACTATAGTTGCCAGTTGCC+TGG | 0.450825 | 5_4:+15599605 | None:intergenic |
| GCCTTTGCTGGAGGGATGAT+CGG | 0.451234 | 5_4:+15601205 | None:intergenic |
| GCCGGTCCTTTGTTGCTCGA+CGG | 0.452645 | 5_4:-15600591 | Msa0840040:CDS |
| AACTGCTTGGTTCCTAATCA+TGG | 0.452670 | 5_4:+15600731 | None:intergenic |
| GCCGACGTGCAGCCATGATT+AGG | 0.455535 | 5_4:-15600743 | Msa0840040:CDS |
| AAGGTCCTTTCCGTCATTCA+CGG | 0.465602 | 5_4:+15599758 | None:intergenic |
| TCAGCTTGTCTAAATTTACT+TGG | 0.470739 | 5_4:-15599666 | Msa0840040:CDS |
| TCCAGCTCATGAAGCAACTT+TGG | 0.470851 | 5_4:+15599479 | None:intergenic |
| TCCTACTGTGCCCACCTCAA+TGG | 0.473062 | 5_4:+15599713 | None:intergenic |
| TCTGCAATTTACTTGGCTAC+AGG | 0.474139 | 5_4:-15599834 | Msa0840040:CDS |
| ATTGAGGTGGGCACAGTAGG+AGG | 0.475464 | 5_4:-15599711 | Msa0840040:CDS |
| CAGTGCCGAAGAAGGTGATA+AGG | 0.480577 | 5_4:+15600976 | None:intergenic |
| GCCATGGCTGGTGCTCTTGG+CGG | 0.483639 | 5_4:-15599885 | Msa0840040:CDS |
| GCGGAGTTGAATCTTACAAC+GGG | 0.487921 | 5_4:+15600438 | None:intergenic |
| CACTAGATTCACTTGTTCAA+CGG | 0.489118 | 5_4:-15600174 | Msa0840040:CDS |
| GTAGATAAAGGAAGCGATGA+GGG | 0.490795 | 5_4:+15600998 | None:intergenic |
| GTGAATTGGATTGAAGGGAG+AGG | 0.493977 | 5_4:-15600020 | Msa0840040:CDS |
| TTGTTCAACGGGTGATGCAA+TGG | 0.497983 | 5_4:-15600162 | Msa0840040:CDS |
| AGTATTAAAGCGACTATGGC+AGG | 0.498529 | 5_4:-15600209 | Msa0840040:CDS |
| GCTTGCAACCAAACAACCTT+CGG | 0.498750 | 5_4:+15600539 | None:intergenic |
| GACAACCTCCTCGTCTTCCA+TGG | 0.499603 | 5_4:+15600824 | None:intergenic |
| CGTGGAGAGGTGTAGAGGTT+CGG | 0.500136 | 5_4:+15601054 | None:intergenic |
| TGAGGTGGGCACAGTAGGAG+GGG | 0.507780 | 5_4:-15599709 | Msa0840040:CDS |
| GTCATTCACGGCTTCCATCA+TGG | 0.509060 | 5_4:+15599770 | None:intergenic |
| ATGGAAGACGAGGAGGTTGT+CGG | 0.511840 | 5_4:-15600822 | Msa0840040:CDS |
| TTGAGGTGGGCACAGTAGGA+GGG | 0.514782 | 5_4:-15599710 | Msa0840040:CDS |
| CACTATGCCTTCCATTGAGG+TGG | 0.515478 | 5_4:-15599724 | Msa0840040:CDS |
| GAACTTTCAACATTCTGAGC+AGG | 0.515798 | 5_4:+15599804 | None:intergenic |
| TAGATCTGTTGTATTTCATG+TGG | 0.517155 | 5_4:+15599514 | None:intergenic |
| AAAGGACCGGCAACACCTAC+CGG | 0.524381 | 5_4:+15600603 | None:intergenic |
| GTTACCGGAAGGTCACTTGA+AGG | 0.524733 | 5_4:-15600702 | Msa0840040:CDS |
| TCCGCCGTTGTGCTCCGTGA+CGG | 0.527582 | 5_4:-15600474 | Msa0840040:CDS |
| GCGGCAGTGAATTGGATTGA+AGG | 0.530179 | 5_4:-15600026 | Msa0840040:CDS |
| GCCGCCAAGAGCACCAGCCA+TGG | 0.530980 | 5_4:+15599884 | None:intergenic |
| CTTACTGGTTCAGCCATGGC+TGG | 0.534747 | 5_4:-15599897 | Msa0840040:CDS |
| GCATAGTGACTGAGATATGA+AGG | 0.538116 | 5_4:+15599739 | None:intergenic |
| CGGTAACTCTCTCAACTGCT+TGG | 0.539523 | 5_4:+15600718 | None:intergenic |
| ATCATTGTAATGAAGGATGA+AGG | 0.540666 | 5_4:+15600953 | None:intergenic |
| CAGCCATGGCTGAACCAGTA+AGG | 0.543116 | 5_4:+15599898 | None:intergenic |
| TGAATTGGATTGAAGGGAGA+GGG | 0.544400 | 5_4:-15600019 | Msa0840040:CDS |
| TTGGTTGCAAGCACCAATAG+AGG | 0.544821 | 5_4:-15600528 | Msa0840040:CDS |
| TCCATTGAGGTGGGCACAGT+AGG | 0.547051 | 5_4:-15599714 | Msa0840040:CDS |
| GATGAAGGCAGTGCCGAAGA+AGG | 0.550122 | 5_4:+15600968 | None:intergenic |
| CCCGTCGAGCAACAAAGGAC+CGG | 0.551690 | 5_4:+15600590 | None:intergenic |
| CAGTGTTGTGAGATGCCGAT+AGG | 0.554170 | 5_4:-15600639 | Msa0840040:CDS |
| CAACTGGCAACTATAGTAGC+TGG | 0.554525 | 5_4:-15599600 | Msa0840040:CDS |
| TACTCGCTTGAATCCAAGCT+CGG | 0.557539 | 5_4:-15600771 | Msa0840040:CDS |
| ACGTCGGCAATCTCCGAGCT+TGG | 0.557698 | 5_4:+15600758 | None:intergenic |
| CTTGAAGGTTTACCGATGGA+AGG | 0.561666 | 5_4:-15600687 | Msa0840040:CDS |
| ATGATGGAAGCCGTGAATGA+CGG | 0.562542 | 5_4:-15599768 | Msa0840040:CDS |
| CCTGTTGATGAGAAGAAAGT+AGG | 0.562696 | 5_4:+15601091 | None:intergenic |
| CAACCTTCGGTGGTTGCCAT+CGG | 0.562844 | 5_4:+15600552 | None:intergenic |
| TCTCAGAGATTGTGAGGACG+TGG | 0.566190 | 5_4:+15601036 | None:intergenic |
| GTCACTTGAAGGTTTACCGA+TGG | 0.569033 | 5_4:-15600691 | Msa0840040:CDS |
| AGTGTTGTGAGATGCCGATA+GGG | 0.570212 | 5_4:-15600638 | Msa0840040:CDS |
| TTCTCACTGTATGACCATGA+TGG | 0.576680 | 5_4:-15599784 | Msa0840040:CDS |
| ACTTGTTGAAAGTGTGAGAG+AGG | 0.576972 | 5_4:+15600361 | None:intergenic |
| GTGCCGATGGCAACCACCGA+AGG | 0.578946 | 5_4:-15600555 | Msa0840040:CDS |
| TCATGTCTGCAATTGCAGCC+GGG | 0.579236 | 5_4:-15599551 | Msa0840040:CDS |
| AGTCACTATGCCTTCCATTG+AGG | 0.579598 | 5_4:-15599727 | Msa0840040:CDS |
| CGAGAATCTCAGAGATTGTG+AGG | 0.579813 | 5_4:+15601030 | None:intergenic |
| CGGCAGTGAATTGGATTGAA+GGG | 0.579892 | 5_4:-15600025 | Msa0840040:CDS |
| TCCGATCATCCCTCCAGCAA+AGG | 0.582284 | 5_4:-15601206 | Msa0840040:CDS |
| CGAGGAGGTTGTCGGTGCGG+TGG | 0.586335 | 5_4:-15600814 | Msa0840040:CDS |
| GGGTTTGTTCAGATTCCGGT+AGG | 0.587024 | 5_4:-15600618 | Msa0840040:CDS |
| GATGAGAAGAAAGTAGGTGA+TGG | 0.590447 | 5_4:+15601097 | None:intergenic |
| GGAGCTAGTAAAGAGACTCC+AGG | 0.592509 | 5_4:-15599636 | Msa0840040:CDS |
| TCATTCCCGTCGAGCAACAA+AGG | 0.592806 | 5_4:+15600585 | None:intergenic |
| AAACCTTACTGGTTCAGCCA+TGG | 0.593436 | 5_4:-15599901 | Msa0840040:CDS |
| CTTCGGCACGACTACGTCAG+TGG | 0.593770 | 5_4:+15600896 | None:intergenic |
| GAGGTGGGCACAGTAGGAGG+GGG | 0.595689 | 5_4:-15599708 | Msa0840040:CDS |
| TGCAACCAAACAACCTTCGG+TGG | 0.597240 | 5_4:+15600542 | None:intergenic |
| CTTGTTGAAAGTGTGAGAGA+GGG | 0.609060 | 5_4:+15600362 | None:intergenic |
| GAATGAGTACACGGTGCCGA+TGG | 0.611062 | 5_4:-15600568 | Msa0840040:CDS |
| ACTGTGCCCACCTCAATGGA+AGG | 0.611639 | 5_4:+15599717 | None:intergenic |
| TGAGGCTGTAATTAAGAAAG+AGG | 0.618413 | 5_4:-15599982 | Msa0840040:CDS |
| TGAGTGAGAGCTCTCCTGCA+AGG | 0.619208 | 5_4:+15599571 | None:intergenic |
| GGTAGATAAAGGAAGCGATG+AGG | 0.619260 | 5_4:+15600997 | None:intergenic |
| GGAAGCCGTGAATGACGGAA+AGG | 0.619681 | 5_4:-15599763 | Msa0840040:CDS |
| TGATGCAATGGGGATGAACA+TGG | 0.620753 | 5_4:-15600150 | Msa0840040:CDS |
| GGCGGAGTTGAATCTTACAA+CGG | 0.622253 | 5_4:+15600437 | None:intergenic |
| GGAATCTGAACAAACCCTAT+CGG | 0.627662 | 5_4:+15600624 | None:intergenic |
| TCGTAGTCAAAACCTTCCAT+CGG | 0.628308 | 5_4:+15600675 | None:intergenic |
| ACTATGCCTTCCATTGAGGT+GGG | 0.631117 | 5_4:-15599723 | Msa0840040:CDS |
| GAGATTGTGAGGACGTGGAG+AGG | 0.633078 | 5_4:+15601041 | None:intergenic |
| AGACGAGGAGGTTGTCGGTG+CGG | 0.634747 | 5_4:-15600817 | Msa0840040:CDS |
| GAGGACGTGGAGAGGTGTAG+AGG | 0.634951 | 5_4:+15601049 | None:intergenic |
| GGGATGAACATGGTATCGAA+AGG | 0.641709 | 5_4:-15600140 | Msa0840040:CDS |
| AAAGCTATTTATGTTTCCGG+TGG | 0.645691 | 5_4:-15600501 | Msa0840040:CDS |
| AGTTATGTCCATGGAAGACG+AGG | 0.649583 | 5_4:-15600832 | Msa0840040:CDS |
| TTGGATTCAAGCGAGTAAGA+CGG | 0.650574 | 5_4:+15600777 | None:intergenic |
| GGGCTCTGGTCATTCCGTCA+CGG | 0.655478 | 5_4:+15600460 | None:intergenic |
| ACTTTCTTCTCATCAACAGG+TGG | 0.656810 | 5_4:-15601088 | Msa0840040:CDS |
| AGGGAAATCAGTGGTGTGTG+AGG | 0.661214 | 5_4:-15600000 | Msa0840040:CDS |
| CAGTTGAGAGAGTTACCGGA+AGG | 0.670466 | 5_4:-15600713 | Msa0840040:CDS |
| GGCTGTAATTAAGAAAGAGG+TGG | 0.673596 | 5_4:-15599979 | Msa0840040:CDS |
| TCCGTCACGGAGCACAACGG+CGG | 0.675091 | 5_4:+15600473 | None:intergenic |
| CGGAGTTGAATCTTACAACG+GGG | 0.676491 | 5_4:+15600439 | None:intergenic |
| GAAAGTGCTGAAGACTAGTG+TGG | 0.677484 | 5_4:-15599952 | Msa0840040:CDS |
| TGAAGGGAGAGGGAAATCAG+TGG | 0.677523 | 5_4:-15600009 | Msa0840040:CDS |
| TTGTTCGGACAAGAAAGCTG+CGG | 0.678327 | 5_4:-15600045 | Msa0840040:CDS |
| TCCTAATCATGGCTGCACGT+CGG | 0.685111 | 5_4:+15600742 | None:intergenic |
| TATGTCCATGGAAGACGAGG+AGG | 0.690419 | 5_4:-15600829 | Msa0840040:CDS |
| GCTCGACGGGAATGAGTACA+CGG | 0.696837 | 5_4:-15600577 | Msa0840040:CDS |
| CATTCCGTCACGGAGCACAA+CGG | 0.714542 | 5_4:+15600470 | None:intergenic |
| GGAGTTGAATCTTACAACGG+GGG | 0.724389 | 5_4:+15600440 | None:intergenic |
| GTTCAACGGGTGATGCAATG+GGG | 0.750923 | 5_4:-15600160 | Msa0840040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAACAAATAGAATTTAAA+GGG | + | chr5_4:15600413-15600432 | None:intergenic | 10.0% |
| !!! | TTTTAACAAATAGAATTTAA+AGG | + | chr5_4:15600414-15600433 | None:intergenic | 10.0% |
| !! | TTTAACAAATAGAATTTAAA+GGG | + | chr5_4:15600413-15600432 | None:intergenic | 10.0% |
| !!! | TTTTAACAAATAGAATTTAA+AGG | + | chr5_4:15600414-15600433 | None:intergenic | 10.0% |
| !!! | ATTTGTTAAAATTACTCATT+TGG | - | chr5_4:15600423-15600442 | Msa0840040:CDS | 15.0% |
| !!! | ATTTGTTAAAATTACTCATT+TGG | - | chr5_4:15600423-15600442 | Msa0840040:CDS | 15.0% |
| !!! | TATATCTGGAAATTTTTGTT+CGG | - | chr5_4:15600655-15600674 | Msa0840040:CDS | 20.0% |
| !!! | TATATCTGGAAATTTTTGTT+CGG | - | chr5_4:15600655-15600674 | Msa0840040:CDS | 20.0% |
| ! | CAAAGAAAACAACATTTGTT+AGG | + | chr5_4:15599586-15599605 | None:intergenic | 25.0% |
| !!! | CTAACAAATGTTGTTTTCTT+TGG | - | chr5_4:15599584-15599603 | Msa0840040:CDS | 25.0% |
| !!! | ACTTTTTGGTCACATATTTT+CGG | + | chr5_4:15599866-15599885 | None:intergenic | 25.0% |
| ! | TTTGACTACGATTCTATATT+AGG | - | chr5_4:15600052-15600071 | Msa0840040:CDS | 25.0% |
| ! | TGTAAAGCTATTTATGTTTC+CGG | - | chr5_4:15600211-15600230 | Msa0840040:CDS | 25.0% |
| ! | TTTCTCTGCGATATTTATTT+AGG | - | chr5_4:15600459-15600478 | Msa0840040:CDS | 25.0% |
| !!! | TATTGTTTCTGCAATTTACT+TGG | - | chr5_4:15600874-15600893 | Msa0840040:CDS | 25.0% |
| !!! | CTAAATTTACTTGGTGTTAA+AGG | - | chr5_4:15601058-15601077 | Msa0840040:CDS | 25.0% |
| ! | CAAAGAAAACAACATTTGTT+AGG | + | chr5_4:15599586-15599605 | None:intergenic | 25.0% |
| !!! | CTAACAAATGTTGTTTTCTT+TGG | - | chr5_4:15599584-15599603 | Msa0840040:CDS | 25.0% |
| !!! | ACTTTTTGGTCACATATTTT+CGG | + | chr5_4:15599866-15599885 | None:intergenic | 25.0% |
| ! | TTTGACTACGATTCTATATT+AGG | - | chr5_4:15600052-15600071 | Msa0840040:CDS | 25.0% |
| ! | TGTAAAGCTATTTATGTTTC+CGG | - | chr5_4:15600211-15600230 | Msa0840040:CDS | 25.0% |
| ! | TTTCTCTGCGATATTTATTT+AGG | - | chr5_4:15600459-15600478 | Msa0840040:CDS | 25.0% |
| !!! | TATTGTTTCTGCAATTTACT+TGG | - | chr5_4:15600874-15600893 | Msa0840040:CDS | 25.0% |
| !!! | CTAAATTTACTTGGTGTTAA+AGG | - | chr5_4:15601058-15601077 | Msa0840040:CDS | 25.0% |
| ATCATTGTAATGAAGGATGA+AGG | + | chr5_4:15599765-15599784 | None:intergenic | 30.0% | |
| CTTCTTCATCATTGTAATGA+AGG | + | chr5_4:15599772-15599791 | None:intergenic | 30.0% | |
| AATAACAAAGGTAGCTTCTT+CGG | + | chr5_4:15599839-15599858 | None:intergenic | 30.0% | |
| ! | ACAAAGTATTAAAGCGACTA+TGG | - | chr5_4:15600502-15600521 | Msa0840040:CDS | 30.0% |
| AACATCCATATCAGGAAAAT+CGG | + | chr5_4:15600630-15600649 | None:intergenic | 30.0% | |
| TTTCCTGATATGGATGTTAT+TGG | - | chr5_4:15600632-15600651 | Msa0840040:CDS | 30.0% | |
| ATACCAATAACATCCATATC+AGG | + | chr5_4:15600638-15600657 | None:intergenic | 30.0% | |
| ATGGATGTTATTGGTATATC+TGG | - | chr5_4:15600641-15600660 | Msa0840040:CDS | 30.0% | |
| AACATGCTAAAAAACCTTAC+TGG | - | chr5_4:15600803-15600822 | Msa0840040:CDS | 30.0% | |
| TCAGCTTGTCTAAATTTACT+TGG | - | chr5_4:15601049-15601068 | Msa0840040:CDS | 30.0% | |
| TAGATCTGTTGTATTTCATG+TGG | + | chr5_4:15601204-15601223 | None:intergenic | 30.0% | |
| ATCATTGTAATGAAGGATGA+AGG | + | chr5_4:15599765-15599784 | None:intergenic | 30.0% | |
| CTTCTTCATCATTGTAATGA+AGG | + | chr5_4:15599772-15599791 | None:intergenic | 30.0% | |
| AATAACAAAGGTAGCTTCTT+CGG | + | chr5_4:15599839-15599858 | None:intergenic | 30.0% | |
| ! | ACAAAGTATTAAAGCGACTA+TGG | - | chr5_4:15600502-15600521 | Msa0840040:CDS | 30.0% |
| AACATCCATATCAGGAAAAT+CGG | + | chr5_4:15600630-15600649 | None:intergenic | 30.0% | |
| TTTCCTGATATGGATGTTAT+TGG | - | chr5_4:15600632-15600651 | Msa0840040:CDS | 30.0% | |
| ATACCAATAACATCCATATC+AGG | + | chr5_4:15600638-15600657 | None:intergenic | 30.0% | |
| ATGGATGTTATTGGTATATC+TGG | - | chr5_4:15600641-15600660 | Msa0840040:CDS | 30.0% | |
| AACATGCTAAAAAACCTTAC+TGG | - | chr5_4:15600803-15600822 | Msa0840040:CDS | 30.0% | |
| TCAGCTTGTCTAAATTTACT+TGG | - | chr5_4:15601049-15601068 | Msa0840040:CDS | 30.0% | |
| TAGATCTGTTGTATTTCATG+TGG | + | chr5_4:15601204-15601223 | None:intergenic | 30.0% | |
| !!! | ATTCTTTGTTTTGCCTTTGC+TGG | + | chr5_4:15599525-15599544 | None:intergenic | 35.0% |
| GAAGGTGATAAGGTAGATAA+AGG | + | chr5_4:15599732-15599751 | None:intergenic | 35.0% | |
| ATCTACCTTATCACCTTCTT+CGG | - | chr5_4:15599734-15599753 | Msa0840040:CDS | 35.0% | |
| ! | ATTTTCGGTGGCAATAACAA+AGG | + | chr5_4:15599851-15599870 | None:intergenic | 35.0% |
| ! | TTTTGGTCACATATTTTCGG+TGG | + | chr5_4:15599863-15599882 | None:intergenic | 35.0% |
| TGACCAAAAAGTTATGTCCA+TGG | - | chr5_4:15599874-15599893 | Msa0840040:CDS | 35.0% | |
| ! | CTTCCATGGACATAACTTTT+TGG | + | chr5_4:15599880-15599899 | None:intergenic | 35.0% |
| ! | AATAGCTTTACAGCCTCTAT+TGG | + | chr5_4:15600203-15600222 | None:intergenic | 35.0% |
| AAAGCTATTTATGTTTCCGG+TGG | - | chr5_4:15600214-15600233 | Msa0840040:CDS | 35.0% | |
| ! | TTTCAACTGAGAAGCTCTTT+TGG | + | chr5_4:15600302-15600321 | None:intergenic | 35.0% |
| ! | GAGAGGGAATCAAAATTTTG+AGG | + | chr5_4:15600340-15600359 | None:intergenic | 35.0% |
| CACTAGATTCACTTGTTCAA+CGG | - | chr5_4:15600541-15600560 | Msa0840040:CDS | 35.0% | |
| ACTAGATTCACTTGTTCAAC+GGG | - | chr5_4:15600542-15600561 | Msa0840040:CDS | 35.0% | |
| !! | TCAAACCGATTTTCCTGATA+TGG | - | chr5_4:15600622-15600641 | Msa0840040:CDS | 35.0% |
| TGAGGCTGTAATTAAGAAAG+AGG | - | chr5_4:15600733-15600752 | Msa0840040:CDS | 35.0% | |
| !!! | ATTCTTTGTTTTGCCTTTGC+TGG | + | chr5_4:15599525-15599544 | None:intergenic | 35.0% |
| GAAGGTGATAAGGTAGATAA+AGG | + | chr5_4:15599732-15599751 | None:intergenic | 35.0% | |
| ATCTACCTTATCACCTTCTT+CGG | - | chr5_4:15599734-15599753 | Msa0840040:CDS | 35.0% | |
| ! | ATTTTCGGTGGCAATAACAA+AGG | + | chr5_4:15599851-15599870 | None:intergenic | 35.0% |
| ! | TTTTGGTCACATATTTTCGG+TGG | + | chr5_4:15599863-15599882 | None:intergenic | 35.0% |
| TGACCAAAAAGTTATGTCCA+TGG | - | chr5_4:15599874-15599893 | Msa0840040:CDS | 35.0% | |
| ! | CTTCCATGGACATAACTTTT+TGG | + | chr5_4:15599880-15599899 | None:intergenic | 35.0% |
| ! | AATAGCTTTACAGCCTCTAT+TGG | + | chr5_4:15600203-15600222 | None:intergenic | 35.0% |
| AAAGCTATTTATGTTTCCGG+TGG | - | chr5_4:15600214-15600233 | Msa0840040:CDS | 35.0% | |
| ! | TTTCAACTGAGAAGCTCTTT+TGG | + | chr5_4:15600302-15600321 | None:intergenic | 35.0% |
| ! | GAGAGGGAATCAAAATTTTG+AGG | + | chr5_4:15600340-15600359 | None:intergenic | 35.0% |
| CACTAGATTCACTTGTTCAA+CGG | - | chr5_4:15600541-15600560 | Msa0840040:CDS | 35.0% | |
| ACTAGATTCACTTGTTCAAC+GGG | - | chr5_4:15600542-15600561 | Msa0840040:CDS | 35.0% | |
| !! | TCAAACCGATTTTCCTGATA+TGG | - | chr5_4:15600622-15600641 | Msa0840040:CDS | 35.0% |
| TGAGGCTGTAATTAAGAAAG+AGG | - | chr5_4:15600733-15600752 | Msa0840040:CDS | 35.0% | |
| !!! | TTTGTTTTGCCTTTGCTGGA+GGG | + | chr5_4:15599521-15599540 | None:intergenic | 40.0% |
| GATGAGAAGAAAGTAGGTGA+TGG | + | chr5_4:15599621-15599640 | None:intergenic | 40.0% | |
| ! | CCTGTTGATGAGAAGAAAGT+AGG | + | chr5_4:15599627-15599646 | None:intergenic | 40.0% |
| CCTACTTTCTTCTCATCAAC+AGG | - | chr5_4:15599624-15599643 | Msa0840040:CDS | 40.0% | |
| ACTTTCTTCTCATCAACAGG+TGG | - | chr5_4:15599627-15599646 | Msa0840040:CDS | 40.0% | |
| GTAGATAAAGGAAGCGATGA+GGG | + | chr5_4:15599720-15599739 | None:intergenic | 40.0% | |
| TTGGATTCAAGCGAGTAAGA+CGG | + | chr5_4:15599941-15599960 | None:intergenic | 40.0% | |
| AACTGCTTGGTTCCTAATCA+TGG | + | chr5_4:15599987-15600006 | None:intergenic | 40.0% | |
| TAAACCTTCAAGTGACCTTC+CGG | + | chr5_4:15600020-15600039 | None:intergenic | 40.0% | |
| TCGTAGTCAAAACCTTCCAT+CGG | + | chr5_4:15600043-15600062 | None:intergenic | 40.0% | |
| GGAATCTGAACAAACCCTAT+CGG | + | chr5_4:15600094-15600113 | None:intergenic | 40.0% | |
| ! | GATAGGGTTTGTTCAGATTC+CGG | - | chr5_4:15600093-15600112 | Msa0840040:CDS | 40.0% |
| ! | CTTGTTGAAAGTGTGAGAGA+GGG | + | chr5_4:15600356-15600375 | None:intergenic | 40.0% |
| ! | ACTTGTTGAAAGTGTGAGAG+AGG | + | chr5_4:15600357-15600376 | None:intergenic | 40.0% |
| AGTATTAAAGCGACTATGGC+AGG | - | chr5_4:15600506-15600525 | Msa0840040:CDS | 40.0% | |
| TGAATTGGATTGAAGGGAGA+GGG | - | chr5_4:15600696-15600715 | Msa0840040:CDS | 40.0% | |
| GGCTGTAATTAAGAAAGAGG+TGG | - | chr5_4:15600736-15600755 | Msa0840040:CDS | 40.0% | |
| TCTGCAATTTACTTGGCTAC+AGG | - | chr5_4:15600881-15600900 | Msa0840040:CDS | 40.0% | |
| GAACTTTCAACATTCTGAGC+AGG | + | chr5_4:15600914-15600933 | None:intergenic | 40.0% | |
| TTCTCACTGTATGACCATGA+TGG | - | chr5_4:15600931-15600950 | Msa0840040:CDS | 40.0% | |
| GCATAGTGACTGAGATATGA+AGG | + | chr5_4:15600979-15600998 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTGCCTTTGCTGGA+GGG | + | chr5_4:15599521-15599540 | None:intergenic | 40.0% |
| GATGAGAAGAAAGTAGGTGA+TGG | + | chr5_4:15599621-15599640 | None:intergenic | 40.0% | |
| ! | CCTGTTGATGAGAAGAAAGT+AGG | + | chr5_4:15599627-15599646 | None:intergenic | 40.0% |
| CCTACTTTCTTCTCATCAAC+AGG | - | chr5_4:15599624-15599643 | Msa0840040:CDS | 40.0% | |
| ACTTTCTTCTCATCAACAGG+TGG | - | chr5_4:15599627-15599646 | Msa0840040:CDS | 40.0% | |
| GTAGATAAAGGAAGCGATGA+GGG | + | chr5_4:15599720-15599739 | None:intergenic | 40.0% | |
| TTGGATTCAAGCGAGTAAGA+CGG | + | chr5_4:15599941-15599960 | None:intergenic | 40.0% | |
| AACTGCTTGGTTCCTAATCA+TGG | + | chr5_4:15599987-15600006 | None:intergenic | 40.0% | |
| TAAACCTTCAAGTGACCTTC+CGG | + | chr5_4:15600020-15600039 | None:intergenic | 40.0% | |
| TCGTAGTCAAAACCTTCCAT+CGG | + | chr5_4:15600043-15600062 | None:intergenic | 40.0% | |
| GGAATCTGAACAAACCCTAT+CGG | + | chr5_4:15600094-15600113 | None:intergenic | 40.0% | |
| ! | GATAGGGTTTGTTCAGATTC+CGG | - | chr5_4:15600093-15600112 | Msa0840040:CDS | 40.0% |
| ! | CTTGTTGAAAGTGTGAGAGA+GGG | + | chr5_4:15600356-15600375 | None:intergenic | 40.0% |
| ! | ACTTGTTGAAAGTGTGAGAG+AGG | + | chr5_4:15600357-15600376 | None:intergenic | 40.0% |
| AGTATTAAAGCGACTATGGC+AGG | - | chr5_4:15600506-15600525 | Msa0840040:CDS | 40.0% | |
| TGAATTGGATTGAAGGGAGA+GGG | - | chr5_4:15600696-15600715 | Msa0840040:CDS | 40.0% | |
| GGCTGTAATTAAGAAAGAGG+TGG | - | chr5_4:15600736-15600755 | Msa0840040:CDS | 40.0% | |
| TCTGCAATTTACTTGGCTAC+AGG | - | chr5_4:15600881-15600900 | Msa0840040:CDS | 40.0% | |
| GAACTTTCAACATTCTGAGC+AGG | + | chr5_4:15600914-15600933 | None:intergenic | 40.0% | |
| TTCTCACTGTATGACCATGA+TGG | - | chr5_4:15600931-15600950 | Msa0840040:CDS | 40.0% | |
| GCATAGTGACTGAGATATGA+AGG | + | chr5_4:15600979-15600998 | None:intergenic | 40.0% | |
| !!! | CTTTGTTTTGCCTTTGCTGG+AGG | + | chr5_4:15599522-15599541 | None:intergenic | 45.0% |
| CGAGAATCTCAGAGATTGTG+AGG | + | chr5_4:15599688-15599707 | None:intergenic | 45.0% | |
| GGTAGATAAAGGAAGCGATG+AGG | + | chr5_4:15599721-15599740 | None:intergenic | 45.0% | |
| AGTTATGTCCATGGAAGACG+AGG | - | chr5_4:15599883-15599902 | Msa0840040:CDS | 45.0% | |
| TACTCGCTTGAATCCAAGCT+CGG | - | chr5_4:15599944-15599963 | Msa0840040:CDS | 45.0% | |
| CAAGCAGTTGAGAGAGTTAC+CGG | - | chr5_4:15599998-15600017 | Msa0840040:CDS | 45.0% | |
| GTCACTTGAAGGTTTACCGA+TGG | - | chr5_4:15600024-15600043 | Msa0840040:CDS | 45.0% | |
| CTTGAAGGTTTACCGATGGA+AGG | - | chr5_4:15600028-15600047 | Msa0840040:CDS | 45.0% | |
| AGTGTTGTGAGATGCCGATA+GGG | - | chr5_4:15600077-15600096 | Msa0840040:CDS | 45.0% | |
| GCTTGCAACCAAACAACCTT+CGG | + | chr5_4:15600179-15600198 | None:intergenic | 45.0% | |
| TTGGTTGCAAGCACCAATAG+AGG | - | chr5_4:15600187-15600206 | Msa0840040:CDS | 45.0% | |
| GGAGTTGAATCTTACAACGG+GGG | + | chr5_4:15600278-15600297 | None:intergenic | 45.0% | |
| CGGAGTTGAATCTTACAACG+GGG | + | chr5_4:15600279-15600298 | None:intergenic | 45.0% | |
| GCGGAGTTGAATCTTACAAC+GGG | + | chr5_4:15600280-15600299 | None:intergenic | 45.0% | |
| GGCGGAGTTGAATCTTACAA+CGG | + | chr5_4:15600281-15600300 | None:intergenic | 45.0% | |
| ! | CAACTGAGAAGCTCTTTTGG+CGG | + | chr5_4:15600299-15600318 | None:intergenic | 45.0% |
| TTGTTCAACGGGTGATGCAA+TGG | - | chr5_4:15600553-15600572 | Msa0840040:CDS | 45.0% | |
| TGTTCAACGGGTGATGCAAT+GGG | - | chr5_4:15600554-15600573 | Msa0840040:CDS | 45.0% | |
| TGATGCAATGGGGATGAACA+TGG | - | chr5_4:15600565-15600584 | Msa0840040:CDS | 45.0% | |
| ! | GGGATGAACATGGTATCGAA+AGG | - | chr5_4:15600575-15600594 | Msa0840040:CDS | 45.0% |
| TTGTTCGGACAAGAAAGCTG+CGG | - | chr5_4:15600670-15600689 | Msa0840040:CDS | 45.0% | |
| CGGCAGTGAATTGGATTGAA+GGG | - | chr5_4:15600690-15600709 | Msa0840040:CDS | 45.0% | |
| GTGAATTGGATTGAAGGGAG+AGG | - | chr5_4:15600695-15600714 | Msa0840040:CDS | 45.0% | |
| !! | GAAAGTGCTGAAGACTAGTG+TGG | - | chr5_4:15600763-15600782 | Msa0840040:CDS | 45.0% |
| GAAGACTAGTGTGGAGTCTT+TGG | - | chr5_4:15600772-15600791 | Msa0840040:CDS | 45.0% | |
| !! | AAACCTTACTGGTTCAGCCA+TGG | - | chr5_4:15600814-15600833 | Msa0840040:CDS | 45.0% |
| ! | ATGATGGAAGCCGTGAATGA+CGG | - | chr5_4:15600947-15600966 | Msa0840040:CDS | 45.0% |
| AAGGTCCTTTCCGTCATTCA+CGG | + | chr5_4:15600960-15600979 | None:intergenic | 45.0% | |
| AGTCACTATGCCTTCCATTG+AGG | - | chr5_4:15600988-15601007 | Msa0840040:CDS | 45.0% | |
| ACTATGCCTTCCATTGAGGT+GGG | - | chr5_4:15600992-15601011 | Msa0840040:CDS | 45.0% | |
| TACTATAGTTGCCAGTTGCC+TGG | + | chr5_4:15601113-15601132 | None:intergenic | 45.0% | |
| CAACTGGCAACTATAGTAGC+TGG | - | chr5_4:15601115-15601134 | Msa0840040:CDS | 45.0% | |
| ! | GTGGCTTTTAACAAGTTGCC+CGG | + | chr5_4:15601185-15601204 | None:intergenic | 45.0% |
| !!! | CTTTGTTTTGCCTTTGCTGG+AGG | + | chr5_4:15599522-15599541 | None:intergenic | 45.0% |
| CGAGAATCTCAGAGATTGTG+AGG | + | chr5_4:15599688-15599707 | None:intergenic | 45.0% | |
| GGTAGATAAAGGAAGCGATG+AGG | + | chr5_4:15599721-15599740 | None:intergenic | 45.0% | |
| AGTTATGTCCATGGAAGACG+AGG | - | chr5_4:15599883-15599902 | Msa0840040:CDS | 45.0% | |
| TACTCGCTTGAATCCAAGCT+CGG | - | chr5_4:15599944-15599963 | Msa0840040:CDS | 45.0% | |
| CAAGCAGTTGAGAGAGTTAC+CGG | - | chr5_4:15599998-15600017 | Msa0840040:CDS | 45.0% | |
| GTCACTTGAAGGTTTACCGA+TGG | - | chr5_4:15600024-15600043 | Msa0840040:CDS | 45.0% | |
| CTTGAAGGTTTACCGATGGA+AGG | - | chr5_4:15600028-15600047 | Msa0840040:CDS | 45.0% | |
| AGTGTTGTGAGATGCCGATA+GGG | - | chr5_4:15600077-15600096 | Msa0840040:CDS | 45.0% | |
| GCTTGCAACCAAACAACCTT+CGG | + | chr5_4:15600179-15600198 | None:intergenic | 45.0% | |
| TTGGTTGCAAGCACCAATAG+AGG | - | chr5_4:15600187-15600206 | Msa0840040:CDS | 45.0% | |
| GGAGTTGAATCTTACAACGG+GGG | + | chr5_4:15600278-15600297 | None:intergenic | 45.0% | |
| CGGAGTTGAATCTTACAACG+GGG | + | chr5_4:15600279-15600298 | None:intergenic | 45.0% | |
| GCGGAGTTGAATCTTACAAC+GGG | + | chr5_4:15600280-15600299 | None:intergenic | 45.0% | |
| GGCGGAGTTGAATCTTACAA+CGG | + | chr5_4:15600281-15600300 | None:intergenic | 45.0% | |
| ! | CAACTGAGAAGCTCTTTTGG+CGG | + | chr5_4:15600299-15600318 | None:intergenic | 45.0% |
| TTGTTCAACGGGTGATGCAA+TGG | - | chr5_4:15600553-15600572 | Msa0840040:CDS | 45.0% | |
| TGTTCAACGGGTGATGCAAT+GGG | - | chr5_4:15600554-15600573 | Msa0840040:CDS | 45.0% | |
| TGATGCAATGGGGATGAACA+TGG | - | chr5_4:15600565-15600584 | Msa0840040:CDS | 45.0% | |
| ! | GGGATGAACATGGTATCGAA+AGG | - | chr5_4:15600575-15600594 | Msa0840040:CDS | 45.0% |
| TTGTTCGGACAAGAAAGCTG+CGG | - | chr5_4:15600670-15600689 | Msa0840040:CDS | 45.0% | |
| CGGCAGTGAATTGGATTGAA+GGG | - | chr5_4:15600690-15600709 | Msa0840040:CDS | 45.0% | |
| GTGAATTGGATTGAAGGGAG+AGG | - | chr5_4:15600695-15600714 | Msa0840040:CDS | 45.0% | |
| !! | GAAAGTGCTGAAGACTAGTG+TGG | - | chr5_4:15600763-15600782 | Msa0840040:CDS | 45.0% |
| GAAGACTAGTGTGGAGTCTT+TGG | - | chr5_4:15600772-15600791 | Msa0840040:CDS | 45.0% | |
| !! | AAACCTTACTGGTTCAGCCA+TGG | - | chr5_4:15600814-15600833 | Msa0840040:CDS | 45.0% |
| ! | ATGATGGAAGCCGTGAATGA+CGG | - | chr5_4:15600947-15600966 | Msa0840040:CDS | 45.0% |
| AAGGTCCTTTCCGTCATTCA+CGG | + | chr5_4:15600960-15600979 | None:intergenic | 45.0% | |
| AGTCACTATGCCTTCCATTG+AGG | - | chr5_4:15600988-15601007 | Msa0840040:CDS | 45.0% | |
| ACTATGCCTTCCATTGAGGT+GGG | - | chr5_4:15600992-15601011 | Msa0840040:CDS | 45.0% | |
| TACTATAGTTGCCAGTTGCC+TGG | + | chr5_4:15601113-15601132 | None:intergenic | 45.0% | |
| CAACTGGCAACTATAGTAGC+TGG | - | chr5_4:15601115-15601134 | Msa0840040:CDS | 45.0% | |
| ! | GTGGCTTTTAACAAGTTGCC+CGG | + | chr5_4:15601185-15601204 | None:intergenic | 45.0% |
| TCTCAGAGATTGTGAGGACG+TGG | + | chr5_4:15599682-15599701 | None:intergenic | 50.0% | |
| ! | CAGTGCCGAAGAAGGTGATA+AGG | + | chr5_4:15599742-15599761 | None:intergenic | 50.0% |
| TATGTCCATGGAAGACGAGG+AGG | - | chr5_4:15599886-15599905 | Msa0840040:CDS | 50.0% | |
| ATGGAAGACGAGGAGGTTGT+CGG | - | chr5_4:15599893-15599912 | Msa0840040:CDS | 50.0% | |
| TCCTAATCATGGCTGCACGT+CGG | + | chr5_4:15599976-15599995 | None:intergenic | 50.0% | |
| CGGTAACTCTCTCAACTGCT+TGG | + | chr5_4:15600000-15600019 | None:intergenic | 50.0% | |
| CAGTTGAGAGAGTTACCGGA+AGG | - | chr5_4:15600002-15600021 | Msa0840040:CDS | 50.0% | |
| GTTACCGGAAGGTCACTTGA+AGG | - | chr5_4:15600013-15600032 | Msa0840040:CDS | 50.0% | |
| CAGTGTTGTGAGATGCCGAT+AGG | - | chr5_4:15600076-15600095 | Msa0840040:CDS | 50.0% | |
| ! | GGGTTTGTTCAGATTCCGGT+AGG | - | chr5_4:15600097-15600116 | Msa0840040:CDS | 50.0% |
| TCATTCCCGTCGAGCAACAA+AGG | + | chr5_4:15600133-15600152 | None:intergenic | 50.0% | |
| TGCAACCAAACAACCTTCGG+TGG | + | chr5_4:15600176-15600195 | None:intergenic | 50.0% | |
| GTTCAACGGGTGATGCAATG+GGG | - | chr5_4:15600555-15600574 | Msa0840040:CDS | 50.0% | |
| AGAAAGCTGCGGCAGTGAAT+TGG | - | chr5_4:15600681-15600700 | Msa0840040:CDS | 50.0% | |
| GCGGCAGTGAATTGGATTGA+AGG | - | chr5_4:15600689-15600708 | Msa0840040:CDS | 50.0% | |
| TGAAGGGAGAGGGAAATCAG+TGG | - | chr5_4:15600706-15600725 | Msa0840040:CDS | 50.0% | |
| AGGGAAATCAGTGGTGTGTG+AGG | - | chr5_4:15600715-15600734 | Msa0840040:CDS | 50.0% | |
| GTCATTCACGGCTTCCATCA+TGG | + | chr5_4:15600948-15600967 | None:intergenic | 50.0% | |
| CACTATGCCTTCCATTGAGG+TGG | - | chr5_4:15600991-15601010 | Msa0840040:CDS | 50.0% | |
| GGAGCTAGTAAAGAGACTCC+AGG | - | chr5_4:15601079-15601098 | Msa0840040:CDS | 50.0% | |
| AGACTCCAGGAGCAAATTCC+AGG | - | chr5_4:15601092-15601111 | Msa0840040:CDS | 50.0% | |
| ! | AGTTGCCTGGAATTTGCTCC+TGG | + | chr5_4:15601100-15601119 | None:intergenic | 50.0% |
| AGGAGCAAATTCCAGGCAAC+TGG | - | chr5_4:15601099-15601118 | Msa0840040:CDS | 50.0% | |
| CTCATGTCTGCAATTGCAGC+CGG | - | chr5_4:15601163-15601182 | Msa0840040:CDS | 50.0% | |
| TCATGTCTGCAATTGCAGCC+GGG | - | chr5_4:15601164-15601183 | Msa0840040:CDS | 50.0% | |
| TCTCAGAGATTGTGAGGACG+TGG | + | chr5_4:15599682-15599701 | None:intergenic | 50.0% | |
| ! | CAGTGCCGAAGAAGGTGATA+AGG | + | chr5_4:15599742-15599761 | None:intergenic | 50.0% |
| TATGTCCATGGAAGACGAGG+AGG | - | chr5_4:15599886-15599905 | Msa0840040:CDS | 50.0% | |
| ATGGAAGACGAGGAGGTTGT+CGG | - | chr5_4:15599893-15599912 | Msa0840040:CDS | 50.0% | |
| TCCTAATCATGGCTGCACGT+CGG | + | chr5_4:15599976-15599995 | None:intergenic | 50.0% | |
| CGGTAACTCTCTCAACTGCT+TGG | + | chr5_4:15600000-15600019 | None:intergenic | 50.0% | |
| CAGTTGAGAGAGTTACCGGA+AGG | - | chr5_4:15600002-15600021 | Msa0840040:CDS | 50.0% | |
| GTTACCGGAAGGTCACTTGA+AGG | - | chr5_4:15600013-15600032 | Msa0840040:CDS | 50.0% | |
| CAGTGTTGTGAGATGCCGAT+AGG | - | chr5_4:15600076-15600095 | Msa0840040:CDS | 50.0% | |
| ! | GGGTTTGTTCAGATTCCGGT+AGG | - | chr5_4:15600097-15600116 | Msa0840040:CDS | 50.0% |
| TCATTCCCGTCGAGCAACAA+AGG | + | chr5_4:15600133-15600152 | None:intergenic | 50.0% | |
| TGCAACCAAACAACCTTCGG+TGG | + | chr5_4:15600176-15600195 | None:intergenic | 50.0% | |
| GTTCAACGGGTGATGCAATG+GGG | - | chr5_4:15600555-15600574 | Msa0840040:CDS | 50.0% | |
| AGAAAGCTGCGGCAGTGAAT+TGG | - | chr5_4:15600681-15600700 | Msa0840040:CDS | 50.0% | |
| GCGGCAGTGAATTGGATTGA+AGG | - | chr5_4:15600689-15600708 | Msa0840040:CDS | 50.0% | |
| TGAAGGGAGAGGGAAATCAG+TGG | - | chr5_4:15600706-15600725 | Msa0840040:CDS | 50.0% | |
| AGGGAAATCAGTGGTGTGTG+AGG | - | chr5_4:15600715-15600734 | Msa0840040:CDS | 50.0% | |
| GTCATTCACGGCTTCCATCA+TGG | + | chr5_4:15600948-15600967 | None:intergenic | 50.0% | |
| CACTATGCCTTCCATTGAGG+TGG | - | chr5_4:15600991-15601010 | Msa0840040:CDS | 50.0% | |
| GGAGCTAGTAAAGAGACTCC+AGG | - | chr5_4:15601079-15601098 | Msa0840040:CDS | 50.0% | |
| AGACTCCAGGAGCAAATTCC+AGG | - | chr5_4:15601092-15601111 | Msa0840040:CDS | 50.0% | |
| ! | AGTTGCCTGGAATTTGCTCC+TGG | + | chr5_4:15601100-15601119 | None:intergenic | 50.0% |
| AGGAGCAAATTCCAGGCAAC+TGG | - | chr5_4:15601099-15601118 | Msa0840040:CDS | 50.0% | |
| CTCATGTCTGCAATTGCAGC+CGG | - | chr5_4:15601163-15601182 | Msa0840040:CDS | 50.0% | |
| TCATGTCTGCAATTGCAGCC+GGG | - | chr5_4:15601164-15601183 | Msa0840040:CDS | 50.0% | |
| TCCGATCATCCCTCCAGCAA+AGG | - | chr5_4:15599509-15599528 | Msa0840040:CDS | 55.0% | |
| GCCTTTGCTGGAGGGATGAT+CGG | + | chr5_4:15599513-15599532 | None:intergenic | 55.0% | |
| ! | CGTGGAGAGGTGTAGAGGTT+CGG | + | chr5_4:15599664-15599683 | None:intergenic | 55.0% |
| GAGATTGTGAGGACGTGGAG+AGG | + | chr5_4:15599677-15599696 | None:intergenic | 55.0% | |
| ! | GATGAAGGCAGTGCCGAAGA+AGG | + | chr5_4:15599750-15599769 | None:intergenic | 55.0% |
| GACAACCTCCTCGTCTTCCA+TGG | + | chr5_4:15599894-15599913 | None:intergenic | 55.0% | |
| ! | CAGATTCCGGTAGGTGTTGC+CGG | - | chr5_4:15600106-15600125 | Msa0840040:CDS | 55.0% |
| AAAGGACCGGCAACACCTAC+CGG | + | chr5_4:15600115-15600134 | None:intergenic | 55.0% | |
| GCTCGACGGGAATGAGTACA+CGG | - | chr5_4:15600138-15600157 | Msa0840040:CDS | 55.0% | |
| ! | GAATGAGTACACGGTGCCGA+TGG | - | chr5_4:15600147-15600166 | Msa0840040:CDS | 55.0% |
| CAACCTTCGGTGGTTGCCAT+CGG | + | chr5_4:15600166-15600185 | None:intergenic | 55.0% | |
| GGCAACCACCGAAGGTTGTT+TGG | - | chr5_4:15600168-15600187 | Msa0840040:CDS | 55.0% | |
| CATTCCGTCACGGAGCACAA+CGG | + | chr5_4:15600248-15600267 | None:intergenic | 55.0% | |
| GAATCTTACAACGGGGGCTC+TGG | + | chr5_4:15600272-15600291 | None:intergenic | 55.0% | |
| CAGCCATGGCTGAACCAGTA+AGG | + | chr5_4:15600820-15600839 | None:intergenic | 55.0% | |
| !! | CTTACTGGTTCAGCCATGGC+TGG | - | chr5_4:15600818-15600837 | Msa0840040:CDS | 55.0% |
| ! | GGAAGCCGTGAATGACGGAA+AGG | - | chr5_4:15600952-15600971 | Msa0840040:CDS | 55.0% |
| ACTGTGCCCACCTCAATGGA+AGG | + | chr5_4:15601001-15601020 | None:intergenic | 55.0% | |
| TCCATTGAGGTGGGCACAGT+AGG | - | chr5_4:15601001-15601020 | Msa0840040:CDS | 55.0% | |
| TCCTACTGTGCCCACCTCAA+TGG | + | chr5_4:15601005-15601024 | None:intergenic | 55.0% | |
| ATTGAGGTGGGCACAGTAGG+AGG | - | chr5_4:15601004-15601023 | Msa0840040:CDS | 55.0% | |
| TTGAGGTGGGCACAGTAGGA+GGG | - | chr5_4:15601005-15601024 | Msa0840040:CDS | 55.0% | |
| ! | GTAGCTGGTTCAGTCCTTGC+AGG | - | chr5_4:15601130-15601149 | Msa0840040:CDS | 55.0% |
| TGAGTGAGAGCTCTCCTGCA+AGG | + | chr5_4:15601147-15601166 | None:intergenic | 55.0% | |
| TCCGATCATCCCTCCAGCAA+AGG | - | chr5_4:15599509-15599528 | Msa0840040:CDS | 55.0% | |
| GCCTTTGCTGGAGGGATGAT+CGG | + | chr5_4:15599513-15599532 | None:intergenic | 55.0% | |
| ! | CGTGGAGAGGTGTAGAGGTT+CGG | + | chr5_4:15599664-15599683 | None:intergenic | 55.0% |
| GAGATTGTGAGGACGTGGAG+AGG | + | chr5_4:15599677-15599696 | None:intergenic | 55.0% | |
| ! | GATGAAGGCAGTGCCGAAGA+AGG | + | chr5_4:15599750-15599769 | None:intergenic | 55.0% |
| GACAACCTCCTCGTCTTCCA+TGG | + | chr5_4:15599894-15599913 | None:intergenic | 55.0% | |
| ! | CAGATTCCGGTAGGTGTTGC+CGG | - | chr5_4:15600106-15600125 | Msa0840040:CDS | 55.0% |
| AAAGGACCGGCAACACCTAC+CGG | + | chr5_4:15600115-15600134 | None:intergenic | 55.0% | |
| GCTCGACGGGAATGAGTACA+CGG | - | chr5_4:15600138-15600157 | Msa0840040:CDS | 55.0% | |
| ! | GAATGAGTACACGGTGCCGA+TGG | - | chr5_4:15600147-15600166 | Msa0840040:CDS | 55.0% |
| CAACCTTCGGTGGTTGCCAT+CGG | + | chr5_4:15600166-15600185 | None:intergenic | 55.0% | |
| GGCAACCACCGAAGGTTGTT+TGG | - | chr5_4:15600168-15600187 | Msa0840040:CDS | 55.0% | |
| CATTCCGTCACGGAGCACAA+CGG | + | chr5_4:15600248-15600267 | None:intergenic | 55.0% | |
| GAATCTTACAACGGGGGCTC+TGG | + | chr5_4:15600272-15600291 | None:intergenic | 55.0% | |
| CAGCCATGGCTGAACCAGTA+AGG | + | chr5_4:15600820-15600839 | None:intergenic | 55.0% | |
| !! | CTTACTGGTTCAGCCATGGC+TGG | - | chr5_4:15600818-15600837 | Msa0840040:CDS | 55.0% |
| ! | GGAAGCCGTGAATGACGGAA+AGG | - | chr5_4:15600952-15600971 | Msa0840040:CDS | 55.0% |
| ACTGTGCCCACCTCAATGGA+AGG | + | chr5_4:15601001-15601020 | None:intergenic | 55.0% | |
| TCCATTGAGGTGGGCACAGT+AGG | - | chr5_4:15601001-15601020 | Msa0840040:CDS | 55.0% | |
| TCCTACTGTGCCCACCTCAA+TGG | + | chr5_4:15601005-15601024 | None:intergenic | 55.0% | |
| ATTGAGGTGGGCACAGTAGG+AGG | - | chr5_4:15601004-15601023 | Msa0840040:CDS | 55.0% | |
| TTGAGGTGGGCACAGTAGGA+GGG | - | chr5_4:15601005-15601024 | Msa0840040:CDS | 55.0% | |
| ! | GTAGCTGGTTCAGTCCTTGC+AGG | - | chr5_4:15601130-15601149 | Msa0840040:CDS | 55.0% |
| TGAGTGAGAGCTCTCCTGCA+AGG | + | chr5_4:15601147-15601166 | None:intergenic | 55.0% | |
| ! | GAGGACGTGGAGAGGTGTAG+AGG | + | chr5_4:15599669-15599688 | None:intergenic | 60.0% |
| CTTCGGCACGACTACGTCAG+TGG | + | chr5_4:15599822-15599841 | None:intergenic | 60.0% | |
| AGACGAGGAGGTTGTCGGTG+CGG | - | chr5_4:15599898-15599917 | Msa0840040:CDS | 60.0% | |
| GGTTGTCGGTGCGGTGGTAT+CGG | - | chr5_4:15599907-15599926 | Msa0840040:CDS | 60.0% | |
| GTTGTCGGTGCGGTGGTATC+GGG | - | chr5_4:15599908-15599927 | Msa0840040:CDS | 60.0% | |
| ACGTCGGCAATCTCCGAGCT+TGG | + | chr5_4:15599960-15599979 | None:intergenic | 60.0% | |
| GCCGACGTGCAGCCATGATT+AGG | - | chr5_4:15599972-15599991 | Msa0840040:CDS | 60.0% | |
| GCCGGTCCTTTGTTGCTCGA+CGG | - | chr5_4:15600124-15600143 | Msa0840040:CDS | 60.0% | |
| CCCGTCGAGCAACAAAGGAC+CGG | + | chr5_4:15600128-15600147 | None:intergenic | 60.0% | |
| CCGGTCCTTTGTTGCTCGAC+GGG | - | chr5_4:15600125-15600144 | Msa0840040:CDS | 60.0% | |
| ! | GGGCTCTGGTCATTCCGTCA+CGG | + | chr5_4:15600258-15600277 | None:intergenic | 60.0% |
| TCAGCCATGGCTGGTGCTCT+TGG | - | chr5_4:15600827-15600846 | Msa0840040:CDS | 60.0% | |
| TGAGGTGGGCACAGTAGGAG+GGG | - | chr5_4:15601006-15601025 | Msa0840040:CDS | 60.0% | |
| ! | GAGGACGTGGAGAGGTGTAG+AGG | + | chr5_4:15599669-15599688 | None:intergenic | 60.0% |
| CTTCGGCACGACTACGTCAG+TGG | + | chr5_4:15599822-15599841 | None:intergenic | 60.0% | |
| AGACGAGGAGGTTGTCGGTG+CGG | - | chr5_4:15599898-15599917 | Msa0840040:CDS | 60.0% | |
| GGTTGTCGGTGCGGTGGTAT+CGG | - | chr5_4:15599907-15599926 | Msa0840040:CDS | 60.0% | |
| GTTGTCGGTGCGGTGGTATC+GGG | - | chr5_4:15599908-15599927 | Msa0840040:CDS | 60.0% | |
| ACGTCGGCAATCTCCGAGCT+TGG | + | chr5_4:15599960-15599979 | None:intergenic | 60.0% | |
| GCCGACGTGCAGCCATGATT+AGG | - | chr5_4:15599972-15599991 | Msa0840040:CDS | 60.0% | |
| GCCGGTCCTTTGTTGCTCGA+CGG | - | chr5_4:15600124-15600143 | Msa0840040:CDS | 60.0% | |
| CCCGTCGAGCAACAAAGGAC+CGG | + | chr5_4:15600128-15600147 | None:intergenic | 60.0% | |
| CCGGTCCTTTGTTGCTCGAC+GGG | - | chr5_4:15600125-15600144 | Msa0840040:CDS | 60.0% | |
| ! | GGGCTCTGGTCATTCCGTCA+CGG | + | chr5_4:15600258-15600277 | None:intergenic | 60.0% |
| TCAGCCATGGCTGGTGCTCT+TGG | - | chr5_4:15600827-15600846 | Msa0840040:CDS | 60.0% | |
| TGAGGTGGGCACAGTAGGAG+GGG | - | chr5_4:15601006-15601025 | Msa0840040:CDS | 60.0% | |
| ! | GTGCCGATGGCAACCACCGA+AGG | - | chr5_4:15600160-15600179 | Msa0840040:CDS | 65.0% |
| !! | CACAACGGCGGAAGCACCAC+CGG | + | chr5_4:15600233-15600252 | None:intergenic | 65.0% |
| TCCGCCGTTGTGCTCCGTGA+CGG | - | chr5_4:15600241-15600260 | Msa0840040:intron | 65.0% | |
| TCCGTCACGGAGCACAACGG+CGG | + | chr5_4:15600245-15600264 | None:intergenic | 65.0% | |
| GCCATGGCTGGTGCTCTTGG+CGG | - | chr5_4:15600830-15600849 | Msa0840040:CDS | 65.0% | |
| GAGGTGGGCACAGTAGGAGG+GGG | - | chr5_4:15601007-15601026 | Msa0840040:CDS | 65.0% | |
| ! | GTGCCGATGGCAACCACCGA+AGG | - | chr5_4:15600160-15600179 | Msa0840040:CDS | 65.0% |
| !! | CACAACGGCGGAAGCACCAC+CGG | + | chr5_4:15600233-15600252 | None:intergenic | 65.0% |
| TCCGCCGTTGTGCTCCGTGA+CGG | - | chr5_4:15600241-15600260 | Msa0840040:intron | 65.0% | |
| TCCGTCACGGAGCACAACGG+CGG | + | chr5_4:15600245-15600264 | None:intergenic | 65.0% | |
| GCCATGGCTGGTGCTCTTGG+CGG | - | chr5_4:15600830-15600849 | Msa0840040:CDS | 65.0% | |
| GAGGTGGGCACAGTAGGAGG+GGG | - | chr5_4:15601007-15601026 | Msa0840040:CDS | 65.0% | |
| CGAGGAGGTTGTCGGTGCGG+TGG | - | chr5_4:15599901-15599920 | Msa0840040:CDS | 70.0% | |
| !! | GCCGCCAAGAGCACCAGCCA+TGG | + | chr5_4:15600834-15600853 | None:intergenic | 70.0% |
| CGAGGAGGTTGTCGGTGCGG+TGG | - | chr5_4:15599901-15599920 | Msa0840040:CDS | 70.0% | |
| !! | GCCGCCAAGAGCACCAGCCA+TGG | + | chr5_4:15600834-15600853 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 15599485 | 15601252 | 15599485 | ID=Msa0840040;Name=Msa0840040 |
| chr5_4 | mRNA | 15599485 | 15601252 | 15599485 | ID=Msa0840040-mRNA-1;Parent=Msa0840040;Name=Msa0840040-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|1|0|1|1|1|2|0|553 |
| chr5_4 | exon | 15600363 | 15601252 | 15600363 | ID=Msa0840040-mRNA-1:exon:6729;Parent=Msa0840040-mRNA-1 |
| chr5_4 | exon | 15599485 | 15600256 | 15599485 | ID=Msa0840040-mRNA-1:exon:6728;Parent=Msa0840040-mRNA-1 |
| chr5_4 | CDS | 15600363 | 15601252 | 15600363 | ID=Msa0840040-mRNA-1:cds;Parent=Msa0840040-mRNA-1 |
| chr5_4 | CDS | 15599485 | 15600256 | 15599485 | ID=Msa0840040-mRNA-1:cds;Parent=Msa0840040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
