AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0840130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0840130 MtrunA17_Chr8g0392281 87.234 47 5 1 63 109 440 485 2.17e-19 82.8
Msa0840130 MtrunA17_Chr8g0392281 91.667 36 3 0 28 63 859 894 2.27e-14 68.2
Msa0840130 MtrunA17_Chr2g0311201 87.234 47 5 1 63 109 438 483 2.37e-19 82.4
Msa0840130 MtrunA17_Chr2g0311201 88.889 36 4 0 28 63 857 892 6.58e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0840130 AT1G04810.1 84.615 39 6 0 71 109 446 484 4.96e-15 70.5
Msa0840130 AT2G32730.1 84.615 39 6 0 71 109 446 484 7.98e-15 70.1

Find 163 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCTAATGTGTTGTTTA+TGG 0.108438 5_4:+15718392 Msa0840130:CDS
TCCTCAGATTCTGTTCTATT+TGG 0.167279 5_4:-15715379 None:intergenic
GCCAATCCATACAAATTAAA+AGG 0.169240 5_4:+15714448 Msa0840130:five_prime_UTR
CCAAGAGGGTTAGAACTATT+TGG 0.196479 5_4:-15714332 None:intergenic
GAGCAAGATGGGTGCAATTT+TGG 0.199961 5_4:+15717833 Msa0840130:five_prime_UTR
TCCTTCTCTTTATCTCCTTC+AGG 0.211020 5_4:+15714731 Msa0840130:five_prime_UTR
GAAACAAAAGCTAGAGTATT+TGG 0.239162 5_4:+15715514 Msa0840130:five_prime_UTR
TTTCATTGTCTGTTTGGTTT+AGG 0.254841 5_4:-15714159 None:intergenic
CCATGTTGACTCCTTTCTTC+TGG 0.263988 5_4:+15714546 Msa0840130:five_prime_UTR
AAACTAGGGTTAGAACTATT+TGG 0.268567 5_4:-15714365 None:intergenic
TTTGCTACTTGAGGTTCTTC+AGG 0.278178 5_4:+15714998 Msa0840130:five_prime_UTR
GAACAGAATCTGAGGAATTA+TGG 0.291292 5_4:+15715386 Msa0840130:five_prime_UTR
GACTATGTCCATACTCTTCT+AGG 0.326578 5_4:+15715867 Msa0840130:five_prime_UTR
CCTTCTCTTTATCTCCTTCA+GGG 0.329392 5_4:+15714732 Msa0840130:five_prime_UTR
AAAGTAAAGGGATGATTTCA+TGG 0.347795 5_4:+15715348 Msa0840130:five_prime_UTR
CAGTGAGGCCATATCTTTGC+TGG 0.357349 5_4:+15717592 Msa0840130:five_prime_UTR
CGAGTATTGAAGATTGTTGA+TGG 0.360101 5_4:-15714503 None:intergenic
TCCACCAGCATCAAGGATTC+CGG 0.369050 5_4:-15717859 None:intergenic
AGAGCACCACCTTCTGAGTA+TGG 0.376878 5_4:-15718273 None:intergenic
GTCTGTTTGGTTTAGGATTG+AGG 0.377336 5_4:-15714152 None:intergenic
TACTATCCTCATGTTCGTTA+TGG 0.379402 5_4:+15717527 Msa0840130:five_prime_UTR
CAGGGTGGGACTGGTGGTGG+TGG 0.381282 5_4:+15718246 Msa0840130:intron
CCTCAGGGTGGGACTGGTGG+TGG 0.381729 5_4:+15718243 Msa0840130:intron
AGATAAGCAATACAGTTCTC+TGG 0.383086 5_4:+15714680 Msa0840130:five_prime_UTR
TACTTGCCTCAGGGTGGGAC+TGG 0.384026 5_4:+15718237 Msa0840130:intron
TAGAAGATACAATATTCATT+AGG 0.384258 5_4:-15715283 None:intergenic
GTTTGATGTTTCACAGGATT+CGG 0.386783 5_4:+15715845 Msa0840130:five_prime_UTR
AGTCTTAGAAAGCAGTCTTA+TGG 0.387317 5_4:-15717892 None:intergenic
CAAAGGCTCCAGCAAAGATA+TGG 0.396501 5_4:-15717600 None:intergenic
TTTGCTGGAGCCTTTGACTT+CGG 0.397652 5_4:+15717607 Msa0840130:five_prime_UTR
ATTGTTGATGGCTTTAGCTT+TGG 0.403124 5_4:-15714491 None:intergenic
TCCACTTCCGTAGTGTGGTT+TGG 0.406462 5_4:+15714638 Msa0840130:five_prime_UTR
ATTCGCGTGTTGGAACCTTC+AGG 0.407002 5_4:+15717696 Msa0840130:five_prime_UTR
AGAGTTGTGTTGTGTTGTGT+TGG 0.410443 5_4:-15714082 None:intergenic
AGTGAAGGTGTAATGGTAGA+AGG 0.415353 5_4:+15715613 Msa0840130:five_prime_UTR
GTTTCACTATCCTATGCCCT+TGG 0.415624 5_4:+15715810 Msa0840130:five_prime_UTR
AATTCTCACCTAGAAGAGTA+TGG 0.416307 5_4:-15715875 None:intergenic
TGTTTAGATCTACTATTGTC+AGG 0.418090 5_4:+15713987 Msa0840130:five_prime_UTR
CCAAATAGTTCTAACCCTCT+TGG 0.423449 5_4:+15714332 Msa0840130:five_prime_UTR
GTTGATGGCTTTAGCTTTGG+TGG 0.427692 5_4:-15714488 None:intergenic
GATGATACAAAATCAGCAAT+AGG 0.428065 5_4:+15715148 Msa0840130:five_prime_UTR
GATGATACAAAATCAGCAAT+AGG 0.428065 5_4:+15715223 Msa0840130:five_prime_UTR
GGTATTTCCTGTGCGGGTAC+AGG 0.428085 5_4:+15717566 Msa0840130:five_prime_UTR
AAATAGCACGGTTATCAATC+TGG 0.428285 5_4:-15715699 None:intergenic
TTTCTTACTAGCCCTCGCTT+TGG 0.435515 5_4:-15718078 None:intergenic
GGTTATCAATCTGGCTTACA+AGG 0.440412 5_4:-15715690 None:intergenic
CGTGTATTCCAGGCAACAAT+TGG 0.442928 5_4:+15717776 Msa0840130:intron
ATTTGGAAGGTTACTGTGAA+GGG 0.444146 5_4:+15715531 Msa0840130:five_prime_UTR
CAAATAGTTCTAACCCTCTT+GGG 0.444479 5_4:+15714333 Msa0840130:five_prime_UTR
AAACACAACACAAAAGTAAA+GGG 0.447042 5_4:+15715336 Msa0840130:five_prime_UTR
TCTGAGATGAGATCTTCATT+TGG 0.455506 5_4:+15715485 Msa0840130:five_prime_UTR
AATCCTGTGAAACATCAAAC+AGG 0.456577 5_4:-15715842 None:intergenic
TTGCCTCAGGGTGGGACTGG+TGG 0.456946 5_4:+15718240 Msa0840130:intron
GCTTTGGTGGCATCAGTGGC+TGG 0.457584 5_4:-15714475 None:intergenic
TACCCTGTTTGATGTTTCAC+AGG 0.458808 5_4:+15715839 Msa0840130:five_prime_UTR
ATACTCGAGCTTTGAACCTC+GGG 0.460022 5_4:+15714519 Msa0840130:five_prime_UTR
TCAGCTCCAAGTGCTGGAAA+AGG 0.460501 5_4:+15718152 Msa0840130:CDS
CTATCCTATGCCCTTGGAGC+TGG 0.468642 5_4:+15715816 Msa0840130:five_prime_UTR
TCTAGATCAGCTCCAAGTGC+TGG 0.470461 5_4:+15718146 Msa0840130:CDS
GATAAAGAGAAGGAGGAAAG+TGG 0.471212 5_4:-15714722 None:intergenic
ATAGTATGATTCTGATAGAA+AGG 0.474928 5_4:-15717510 None:intergenic
GAGTTGTGTTGTGTTGTGTT+GGG 0.476369 5_4:-15714081 None:intergenic
CTAATGTGTTGTTTATGGCC+AGG 0.476937 5_4:+15718397 Msa0840130:CDS
CAAACACAACACAAAAGTAA+AGG 0.476996 5_4:+15715335 Msa0840130:five_prime_UTR
CAGATCAGTGATTCGCGTGT+TGG 0.484025 5_4:+15717686 Msa0840130:five_prime_UTR
TTACCGTAGCTGTTGCTATG+AGG 0.485433 5_4:-15717658 None:intergenic
CATAGCAACAGCTACGGTAA+TGG 0.493331 5_4:+15717661 Msa0840130:five_prime_UTR
ACCAAACCACACTACGGAAG+TGG 0.496315 5_4:-15714639 None:intergenic
GAGGGCATTAAACAATTCCT+TGG 0.498503 5_4:+15718330 Msa0840130:CDS
CAGCTCCAAGTGCTGGAAAA+GGG 0.505400 5_4:+15718153 Msa0840130:CDS
CATTTCTTCCACCAGCATCA+AGG 0.505426 5_4:-15717866 None:intergenic
TTTGATGGATTGGTAAAACT+AGG 0.505971 5_4:-15714380 None:intergenic
TTGATGGATTGGTAAAACTA+GGG 0.507137 5_4:-15714379 None:intergenic
TAAGAAAGCTGAGGAACAGA+AGG 0.510396 5_4:+15718094 Msa0840130:CDS
CTGAGGAATTATGGAAGCAT+GGG 0.513099 5_4:+15715395 Msa0840130:five_prime_UTR
CGATGATGATAAGAGAATAG+AGG 0.513359 5_4:-15714049 None:intergenic
CCAATCCATACAAATTAAAA+GGG 0.514267 5_4:+15714449 Msa0840130:five_prime_UTR
GACGATACCATGAGCAAGAT+GGG 0.515729 5_4:+15717822 Msa0840130:five_prime_UTR
AGAACCTCAAGTAGCAAAAG+AGG 0.516803 5_4:-15714993 None:intergenic
GCAAAGATATACCAGAAGAA+AGG 0.519041 5_4:-15714557 None:intergenic
TTTAATGCCCTCTACATGGT+TGG 0.521824 5_4:-15718319 None:intergenic
AGCTTCTCCATCCTTCTCAC+TGG 0.522542 5_4:-15718183 None:intergenic
GGTGGTGCTCTTTATGCCCT+CGG 0.523440 5_4:+15718285 Msa0840130:CDS
ATTGTTTAATGCCCTCTACA+TGG 0.524482 5_4:-15718323 None:intergenic
TTTAGCTTTGGTGGCATCAG+TGG 0.530079 5_4:-15714479 None:intergenic
GTTTAGATCTACTATTGTCA+GGG 0.531595 5_4:+15713988 Msa0840130:five_prime_UTR
TCTGAGGAATTATGGAAGCA+TGG 0.533004 5_4:+15715394 Msa0840130:five_prime_UTR
TATTTGGAAGGTTACTGTGA+AGG 0.533156 5_4:+15715530 Msa0840130:five_prime_UTR
TACCGTAGCTGTTGCTATGA+GGG 0.533316 5_4:-15717657 None:intergenic
GAAGGATGGAGAAGCTATGC+AGG 0.533356 5_4:+15718190 Msa0840130:CDS
GATAAGCAATACAGTTCTCT+GGG 0.536027 5_4:+15714681 Msa0840130:five_prime_UTR
TTGGTTGGTGAGATCTGTGA+TGG 0.536226 5_4:-15714313 None:intergenic
GTGAAGGTGTAATGGTAGAA+GGG 0.536990 5_4:+15715614 Msa0840130:five_prime_UTR
CTTGGAGCTGATCTAGAGTC+GGG 0.545809 5_4:-15718140 None:intergenic
GCATCCGGAATCCTTGATGC+TGG 0.547006 5_4:+15717855 Msa0840130:five_prime_UTR
CTTGCGCAGCATTACTGTTG+AGG 0.549114 5_4:+15718359 Msa0840130:CDS
GCTGTGGGTATTTCCTGTGC+GGG 0.551364 5_4:+15717560 Msa0840130:five_prime_UTR
AATACTCGAGCTTTGAACCT+CGG 0.551558 5_4:+15714518 Msa0840130:five_prime_UTR
TTATGGAGCAGCTCTTGCTG+TGG 0.551926 5_4:+15717544 Msa0840130:five_prime_UTR
GCTCAAGTAAATGGAGGTGA+AGG 0.553330 5_4:-15714959 None:intergenic
ACTGAGACCTGTACCCGCAC+AGG 0.553691 5_4:-15717573 None:intergenic
TGACGATACCATGAGCAAGA+TGG 0.556530 5_4:+15717821 Msa0840130:five_prime_UTR
TAATTTGTATGGATTGGCAG+AGG 0.556979 5_4:-15714443 None:intergenic
GATAGAAAGGAAACAATTCG+TGG 0.558337 5_4:-15717497 None:intergenic
GCATGTGAGTGAAGGTGTAA+TGG 0.559025 5_4:+15715606 Msa0840130:five_prime_UTR
AAGACTTCCAGTGAGAAGGA+TGG 0.561102 5_4:+15718176 Msa0840130:CDS
ATTCAACATGGTGCATGCCT+AGG 0.566883 5_4:+15718422 Msa0840130:CDS
GAGGGTTAGAACTATTTGGT+TGG 0.567262 5_4:-15714328 None:intergenic
GGTACCAGCTCCAAGGGCAT+AGG 0.568730 5_4:-15715820 None:intergenic
AAAAGAACCAAACCACACTA+CGG 0.572998 5_4:-15714645 None:intergenic
CAAAAGCTAGAGTATTTGGA+AGG 0.577000 5_4:+15715518 Msa0840130:five_prime_UTR
TCCGGAATCCTTGATGCTGG+TGG 0.577058 5_4:+15717858 Msa0840130:five_prime_UTR
GTATTCCAGGCAACAATTGG+AGG 0.577312 5_4:+15717779 Msa0840130:intron
ACTTGGAGCTGATCTAGAGT+CGG 0.577757 5_4:-15718141 None:intergenic
TATGGAGCAGCTCTTGCTGT+GGG 0.579058 5_4:+15717545 Msa0840130:five_prime_UTR
TTCTTGTGCAATTAACATCA+CGG 0.579246 5_4:+15715171 Msa0840130:five_prime_UTR
TTCTTGTGCAATTAACATCA+CGG 0.579246 5_4:+15715246 Msa0840130:five_prime_UTR
CCCTGAAGGAGATAAAGAGA+AGG 0.579452 5_4:-15714732 None:intergenic
GAAGTGGATCTGCGCAGTAA+CGG 0.581064 5_4:-15714623 None:intergenic
TGCTGTGGGTATTTCCTGTG+CGG 0.582512 5_4:+15717559 Msa0840130:five_prime_UTR
AAACAGGGTACCAGCTCCAA+GGG 0.584022 5_4:-15715826 None:intergenic
AATTGCACCCATCTTGCTCA+TGG 0.584856 5_4:-15717829 None:intergenic
TGAAGGAGATAAAGAGAAGG+AGG 0.586033 5_4:-15714729 None:intergenic
CCAGAAGAAAGGAGTCAACA+TGG 0.586834 5_4:-15714546 None:intergenic
GATAAAGTTACTGCAGTGGT+TGG 0.586930 5_4:+15717922 Msa0840130:CDS
AGGGAAGACTTCCAGTGAGA+AGG 0.589004 5_4:+15718172 Msa0840130:CDS
ACCAAATAGAACAGAATCTG+AGG 0.589010 5_4:+15715378 Msa0840130:five_prime_UTR
CAAACAGGGTACCAGCTCCA+AGG 0.592644 5_4:-15715827 None:intergenic
ATTTATGCCAACCATGTAGA+GGG 0.596066 5_4:+15718312 Msa0840130:CDS
TCAACGACATCCGAAGTCAA+AGG 0.597144 5_4:-15717617 None:intergenic
CTTGTCTGTAACTATAACAG+TGG 0.598517 5_4:+15714588 Msa0840130:five_prime_UTR
TAGTTACAGACAAGAGGGTG+AGG 0.601412 5_4:-15714579 None:intergenic
ATCAGCTAAGGCCAAAGCGA+GGG 0.602026 5_4:+15718067 Msa0840130:intron
GCAGATCCACTTCCGTAGTG+TGG 0.602650 5_4:+15714633 Msa0840130:five_prime_UTR
AACAAAATACGAACAGAAGG+AGG 0.611930 5_4:-15714936 None:intergenic
GATTTATGCCAACCATGTAG+AGG 0.612395 5_4:+15718311 Msa0840130:CDS
TTTAGATCTACTATTGTCAG+GGG 0.612661 5_4:+15713989 Msa0840130:five_prime_UTR
GCATGATAAAGTTACTGCAG+TGG 0.616842 5_4:+15717918 Msa0840130:exon
AATTAATGAGCAAAATAGCA+CGG 0.617021 5_4:-15715711 None:intergenic
AGGAACAAAATACGAACAGA+AGG 0.617477 5_4:-15714939 None:intergenic
CTGTTATAGTTACAGACAAG+AGG 0.617938 5_4:-15714585 None:intergenic
GGTGGTAGTCCATACTCAGA+AGG 0.623238 5_4:+15718264 Msa0840130:CDS
TTGGTGAGATCTACCCAAGA+GGG 0.625470 5_4:-15714346 None:intergenic
ACCTCAAGTAGCAAAAGAGG+AGG 0.630505 5_4:-15714990 None:intergenic
TGCCCTCATAGCAACAGCTA+CGG 0.631214 5_4:+15717655 Msa0840130:five_prime_UTR
TATGGCCAGGTCATTCAACA+TGG 0.632302 5_4:+15718410 Msa0840130:CDS
TTGGTGGCATCAGTGGCTGG+TGG 0.638100 5_4:-15714472 None:intergenic
CATCAGCTAAGGCCAAAGCG+AGG 0.640808 5_4:+15718066 Msa0840130:intron
TGTTATAGTTACAGACAAGA+GGG 0.644988 5_4:-15714584 None:intergenic
ATGCACCATGTTGAATGACC+TGG 0.645183 5_4:-15718415 None:intergenic
TTGTCTGTAACTATAACAGT+GGG 0.645453 5_4:+15714589 Msa0840130:five_prime_UTR
GAGGGCTAGTAAGAAAGCTG+AGG 0.648601 5_4:+15718085 Msa0840130:CDS
TTGATGATGCATGTGAGTGA+AGG 0.656832 5_4:+15715598 Msa0840130:five_prime_UTR
GGTAGTCCATACTCAGAAGG+TGG 0.657262 5_4:+15718267 Msa0840130:CDS
GTTATCAATCTGGCTTACAA+GGG 0.667690 5_4:-15715689 None:intergenic
GCTGCTCCATAACGAACATG+AGG 0.668232 5_4:-15717533 None:intergenic
TGCTGCGCAAGCTATCACCA+AGG 0.669020 5_4:-15718347 None:intergenic
GGTTGGCATAAATCAGACCG+AGG 0.686912 5_4:-15718302 None:intergenic
GTTGGCATAAATCAGACCGA+GGG 0.690010 5_4:-15718301 None:intergenic
GAGTCAACATGGATATCCCG+AGG 0.698983 5_4:-15714535 None:intergenic
TGCGGGTACAGGTCTCAGTG+AGG 0.700207 5_4:+15717577 Msa0840130:five_prime_UTR
ATCCTGTGAAACATCAAACA+GGG 0.706287 5_4:-15715841 None:intergenic
TTTGGTGAGATCTACCCAAG+AGG 0.722017 5_4:-15714347 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACATAAAAATAAACT+TGG - chr5_4:15716180-15716199 None:intergenic 10.0%
!!! ATTATTAATAAGACTTTTCA+TGG + chr5_4:15714834-15714853 Msa0840130:intron 15.0%
!!! ATGAATTTTTACAAAATTCA+AGG + chr5_4:15716294-15716313 Msa0840130:intron 15.0%
!!! ATTCACAGAATTTTATTTAT+TGG + chr5_4:15716614-15716633 Msa0840130:intron 15.0%
!!! TTCACAGAATTTTATTTATT+GGG + chr5_4:15716615-15716634 Msa0840130:intron 15.0%
!! AAAAAAAAAAAAAGTAACTC+GGG - chr5_4:15717409-15717428 None:intergenic 15.0%
!! CAAAAAAAAAAAAAGTAACT+CGG - chr5_4:15717410-15717429 None:intergenic 15.0%
!!! TTACTTTTTTTTTTTTTGTG+TGG + chr5_4:15717412-15717431 Msa0840130:intron 15.0%
!!! AAGAGAGTAGATTTTTTTTT+TGG - chr5_4:15714029-15714048 None:intergenic 20.0%
!!! ATTTGATTGATGTTTTTGAT+TGG - chr5_4:15714285-15714304 None:intergenic 20.0%
!!! GAAAAGTCTTATTAATAATG+TGG - chr5_4:15714833-15714852 None:intergenic 20.0%
!!! TAAGCTTTTAATTTTATGCA+GGG - chr5_4:15715055-15715074 None:intergenic 20.0%
!!! TTAAGCTTTTAATTTTATGC+AGG - chr5_4:15715056-15715075 None:intergenic 20.0%
!! TAGAAGATACAATATTCATT+AGG - chr5_4:15715286-15715305 None:intergenic 20.0%
!! ATATACAATCATGAAAAATG+TGG - chr5_4:15716050-15716069 None:intergenic 20.0%
!!! TTTTTCATGATTGTATATTG+AGG + chr5_4:15716052-15716071 Msa0840130:intron 20.0%
!!! TATTTTTATGTTTTAGCGAA+AGG + chr5_4:15716079-15716098 Msa0840130:intron 20.0%
!!! ATTTTTATGTTTTAGCGAAA+GGG + chr5_4:15716080-15716099 Msa0840130:intron 20.0%
!!! AATTTTTACAAAATTCAAGG+TGG + chr5_4:15716297-15716316 Msa0840130:intron 20.0%
!!! ATAACTAACAAAAACCTTTT+GGG - chr5_4:15716420-15716439 None:intergenic 20.0%
!! AAATATGTCATGTATACTAT+AGG + chr5_4:15716481-15716500 Msa0840130:intron 20.0%
!!! ATTTTATTTATTGGGTTCAT+AGG + chr5_4:15716623-15716642 Msa0840130:intron 20.0%
!! AATGGTAGTAATGTATTTAT+AGG - chr5_4:15716977-15716996 None:intergenic 20.0%
!! AGAGGAAATATAAAAAGAAA+AGG - chr5_4:15717383-15717402 None:intergenic 20.0%
!!! TGGTATTTTTTGTGTGTTTT+GGG - chr5_4:15714256-15714275 None:intergenic 25.0%
!!! ATGGTATTTTTTGTGTGTTT+TGG - chr5_4:15714257-15714276 None:intergenic 25.0%
!!! ATGTTGGATTTTAGTTTTGA+TGG - chr5_4:15714398-15714417 None:intergenic 25.0%
!! CCAAAAAGAATTTTTGATGT+TGG - chr5_4:15714414-15714433 None:intergenic 25.0%
!! CCAACATCAAAAATTCTTTT+TGG + chr5_4:15714411-15714430 Msa0840130:five_prime_UTR 25.0%
! CCAATCCATACAAATTAAAA+GGG + chr5_4:15714449-15714468 Msa0840130:five_prime_UTR 25.0%
!!! TACTTCTTTTTAGTGTGAAT+TGG + chr5_4:15714863-15714882 Msa0840130:intron 25.0%
! AAACACAACACAAAAGTAAA+GGG + chr5_4:15715336-15715355 Msa0840130:five_prime_UTR 25.0%
! AATTAATGAGCAAAATAGCA+CGG - chr5_4:15715714-15715733 None:intergenic 25.0%
! TACTATGATCTCTATGAAAA+TGG + chr5_4:15715950-15715969 Msa0840130:intron 25.0%
!!! ACAAGACTTTATTTTACTGA+TGG + chr5_4:15716258-15716277 Msa0840130:intron 25.0%
!!! ATAGAAATCTGATTTTGATC+AGG + chr5_4:15716346-15716365 Msa0840130:intron 25.0%
!! GATAACTAACAAAAACCTTT+TGG - chr5_4:15716421-15716440 None:intergenic 25.0%
!! AGGTTTTTGTTAGTTATCTA+TGG + chr5_4:15716423-15716442 Msa0840130:intron 25.0%
!! GGTTTTTGTTAGTTATCTAT+GGG + chr5_4:15716424-15716443 Msa0840130:intron 25.0%
!! GAATTTTCATTGTCAAGATT+TGG - chr5_4:15716551-15716570 None:intergenic 25.0%
! GTATAAGCATTAATGAGTAT+AGG - chr5_4:15716661-15716680 None:intergenic 25.0%
! TATTTGTCTACTCGAAAAAA+GGG + chr5_4:15716694-15716713 Msa0840130:intron 25.0%
! AGGTGATAAACTAATTTGAT+AGG + chr5_4:15716743-15716762 Msa0840130:intron 25.0%
! GGTGATAAACTAATTTGATA+GGG + chr5_4:15716744-15716763 Msa0840130:intron 25.0%
! AAATGATGTTTCATAGTTGT+AGG - chr5_4:15716852-15716871 None:intergenic 25.0%
! TATTTATAGGAATTTGACAG+GGG - chr5_4:15716964-15716983 None:intergenic 25.0%
! GTATTTATAGGAATTTGACA+GGG - chr5_4:15716965-15716984 None:intergenic 25.0%
! TGTATTTATAGGAATTTGAC+AGG - chr5_4:15716966-15716985 None:intergenic 25.0%
! TAATGGCTAAACAAAGTAAA+TGG - chr5_4:15716995-15717014 None:intergenic 25.0%
! GTTGAACTAAATTGATGTAA+TGG - chr5_4:15717012-15717031 None:intergenic 25.0%
!! AAATCTTATGTTTTCAGCAA+AGG + chr5_4:15717212-15717231 Msa0840130:intron 25.0%
! ATAGTATGATTCTGATAGAA+AGG - chr5_4:15717513-15717532 None:intergenic 25.0%
!! GGTAAGGAAAGTATATTATT+TGG + chr5_4:15717717-15717736 Msa0840130:intron 25.0%
! AAGCTTATGAAATAGATAAG+GGG - chr5_4:15717982-15718001 None:intergenic 25.0%
! CAAGCTTATGAAATAGATAA+GGG - chr5_4:15717983-15718002 None:intergenic 25.0%
!!! TCTATCTAATGTGTTGTTTA+TGG + chr5_4:15718392-15718411 Msa0840130:CDS 25.0%
TGTTTAGATCTACTATTGTC+AGG + chr5_4:15713987-15714006 Msa0840130:five_prime_UTR 30.0%
GTTTAGATCTACTATTGTCA+GGG + chr5_4:15713988-15714007 Msa0840130:five_prime_UTR 30.0%
TTTAGATCTACTATTGTCAG+GGG + chr5_4:15713989-15714008 Msa0840130:five_prime_UTR 30.0%
! TTTCATTGTCTGTTTGGTTT+AGG - chr5_4:15714162-15714181 None:intergenic 30.0%
! GTGATTTTTCATTGTCTGTT+TGG - chr5_4:15714168-15714187 None:intergenic 30.0%
!!! GGTATTTTTTGTGTGTTTTG+GGG - chr5_4:15714255-15714274 None:intergenic 30.0%
!! ATGTTTTTGATTGGATTGCA+TGG - chr5_4:15714276-15714295 None:intergenic 30.0%
AAACTAGGGTTAGAACTATT+TGG - chr5_4:15714368-15714387 None:intergenic 30.0%
!! TTGATGGATTGGTAAAACTA+GGG - chr5_4:15714382-15714401 None:intergenic 30.0%
!! TTTGATGGATTGGTAAAACT+AGG - chr5_4:15714383-15714402 None:intergenic 30.0%
!!! GGATTTTAGTTTTGATGGAT+TGG - chr5_4:15714393-15714412 None:intergenic 30.0%
GCCAATCCATACAAATTAAA+AGG + chr5_4:15714448-15714467 Msa0840130:five_prime_UTR 30.0%
!!! CCCTTTTAATTTGTATGGAT+TGG - chr5_4:15714452-15714471 None:intergenic 30.0%
TGTTATAGTTACAGACAAGA+GGG - chr5_4:15714587-15714606 None:intergenic 30.0%
TTGTCTGTAACTATAACAGT+GGG + chr5_4:15714589-15714608 Msa0840130:five_prime_UTR 30.0%
ATAATGTGGTATAAATTCCC+AGG - chr5_4:15714819-15714838 None:intergenic 30.0%
!! GCTGATTTTGTATCATCAAT+AGG - chr5_4:15715145-15715164 None:intergenic 30.0%
GATGATACAAAATCAGCAAT+AGG + chr5_4:15715148-15715167 Msa0840130:five_prime_UTR 30.0%
TTCTTGTGCAATTAACATCA+CGG + chr5_4:15715171-15715190 Msa0840130:five_prime_UTR 30.0%
!! GCTGATTTTGTATCATCAAT+AGG - chr5_4:15715145-15715164 None:intergenic 30.0%
GATGATACAAAATCAGCAAT+AGG + chr5_4:15715148-15715167 Msa0840130:five_prime_UTR 30.0%
TTCTTGTGCAATTAACATCA+CGG + chr5_4:15715171-15715190 Msa0840130:five_prime_UTR 30.0%
CAAACACAACACAAAAGTAA+AGG + chr5_4:15715335-15715354 Msa0840130:five_prime_UTR 30.0%
AAAGTAAAGGGATGATTTCA+TGG + chr5_4:15715348-15715367 Msa0840130:five_prime_UTR 30.0%
GATGTTAAAAAGAGAGCTTA+TGG + chr5_4:15715424-15715443 Msa0840130:five_prime_UTR 30.0%
! GAAACAAAAGCTAGAGTATT+TGG + chr5_4:15715514-15715533 Msa0840130:five_prime_UTR 30.0%
!! ATGGACTGCATTGATAATTT+TGG + chr5_4:15715969-15715988 Msa0840130:intron 30.0%
TGGTACCTTCTTCTATTATT+AGG + chr5_4:15715989-15716008 Msa0840130:intron 30.0%
GGTACCTTCTTCTATTATTA+GGG + chr5_4:15715990-15716009 Msa0840130:intron 30.0%
CTTTCCCTAATAATAGAAGA+AGG - chr5_4:15715997-15716016 None:intergenic 30.0%
TAAACTTGGCCCTAATAATA+GGG - chr5_4:15716166-15716185 None:intergenic 30.0%
ATAAACTTGGCCCTAATAAT+AGG - chr5_4:15716167-15716186 None:intergenic 30.0%
TTGACAATGAAAATTCAACG+TGG + chr5_4:15716555-15716574 Msa0840130:intron 30.0%
TGACAATGAAAATTCAACGT+GGG + chr5_4:15716556-15716575 Msa0840130:intron 30.0%
AAAATTCTGTGAATACCATG+TGG - chr5_4:15716608-15716627 None:intergenic 30.0%
!!! CTTTTTTCGAGTAGACAAAT+AGG - chr5_4:15716695-15716714 None:intergenic 30.0%
CTATTTGTCTACTCGAAAAA+AGG + chr5_4:15716693-15716712 Msa0840130:intron 30.0%
! ATATGCTAGTTTCAAGTCTA+AGG + chr5_4:15717245-15717264 Msa0840130:intron 30.0%
AAAGTGAAGTAATTGAGGAA+TGG - chr5_4:15717271-15717290 None:intergenic 30.0%
AATATACTTTCCTTACCTGA+AGG - chr5_4:15717714-15717733 None:intergenic 30.0%
AGCTTATGAAATAGATAAGG+GGG - chr5_4:15717981-15718000 None:intergenic 30.0%
CCAAGCTTATGAAATAGATA+AGG - chr5_4:15717984-15718003 None:intergenic 30.0%
CCTTATCTATTTCATAAGCT+TGG + chr5_4:15717981-15718000 Msa0840130:intron 30.0%
CGATGATGATAAGAGAATAG+AGG - chr5_4:15714052-15714071 None:intergenic 35.0%
! AGTACGTTTTGTCTAAAGGA+AGG - chr5_4:15714190-15714209 None:intergenic 35.0%
! ACTGAGTACGTTTTGTCTAA+AGG - chr5_4:15714194-15714213 None:intergenic 35.0%
!!! TTTTTTGTGTGTTTTGGGGT+TGG - chr5_4:15714251-15714270 None:intergenic 35.0%
!! CAAATAGTTCTAACCCTCTT+GGG + chr5_4:15714333-15714352 Msa0840130:five_prime_UTR 35.0%
!! TAATTTGTATGGATTGGCAG+AGG - chr5_4:15714446-15714465 None:intergenic 35.0%
!! ATTGTTGATGGCTTTAGCTT+TGG - chr5_4:15714494-15714513 None:intergenic 35.0%
!! CGAGTATTGAAGATTGTTGA+TGG - chr5_4:15714506-15714525 None:intergenic 35.0%
GCAAAGATATACCAGAAGAA+AGG - chr5_4:15714560-15714579 None:intergenic 35.0%
CTGTTATAGTTACAGACAAG+AGG - chr5_4:15714588-15714607 None:intergenic 35.0%
CTTGTCTGTAACTATAACAG+TGG + chr5_4:15714588-15714607 Msa0840130:five_prime_UTR 35.0%
AAAAGAACCAAACCACACTA+CGG - chr5_4:15714648-15714667 None:intergenic 35.0%
AGATAAGCAATACAGTTCTC+TGG + chr5_4:15714680-15714699 Msa0840130:five_prime_UTR 35.0%
GATAAGCAATACAGTTCTCT+GGG + chr5_4:15714681-15714700 Msa0840130:five_prime_UTR 35.0%
! GAATCCTCTTTATCTCCTTT+TGG + chr5_4:15714785-15714804 Msa0840130:intron 35.0%
AACAAAATACGAACAGAAGG+AGG - chr5_4:15714939-15714958 None:intergenic 35.0%
AGGAACAAAATACGAACAGA+AGG - chr5_4:15714942-15714961 None:intergenic 35.0%
CAAAAAGCTCAAGTAAATGG+AGG - chr5_4:15714968-15714987 None:intergenic 35.0%
GAGCAAAAAGCTCAAGTAAA+TGG - chr5_4:15714971-15714990 None:intergenic 35.0%
ACCAAATAGAACAGAATCTG+AGG + chr5_4:15715378-15715397 Msa0840130:five_prime_UTR 35.0%
TCCTCAGATTCTGTTCTATT+TGG - chr5_4:15715382-15715401 None:intergenic 35.0%
GAACAGAATCTGAGGAATTA+TGG + chr5_4:15715386-15715405 Msa0840130:five_prime_UTR 35.0%
! TCTGAGATGAGATCTTCATT+TGG + chr5_4:15715485-15715504 Msa0840130:five_prime_UTR 35.0%
! CAAAAGCTAGAGTATTTGGA+AGG + chr5_4:15715518-15715537 Msa0840130:five_prime_UTR 35.0%
TATTTGGAAGGTTACTGTGA+AGG + chr5_4:15715530-15715549 Msa0840130:five_prime_UTR 35.0%
ATTTGGAAGGTTACTGTGAA+GGG + chr5_4:15715531-15715550 Msa0840130:five_prime_UTR 35.0%
! GTTATCAATCTGGCTTACAA+GGG - chr5_4:15715692-15715711 None:intergenic 35.0%
AAATAGCACGGTTATCAATC+TGG - chr5_4:15715702-15715721 None:intergenic 35.0%
!!! CGATGCTGTTTTTGCATATA+CGG + chr5_4:15715764-15715783 Msa0840130:five_prime_UTR 35.0%
ATCCTGTGAAACATCAAACA+GGG - chr5_4:15715844-15715863 None:intergenic 35.0%
AATCCTGTGAAACATCAAAC+AGG - chr5_4:15715845-15715864 None:intergenic 35.0%
GTTTGATGTTTCACAGGATT+CGG + chr5_4:15715845-15715864 Msa0840130:five_prime_UTR 35.0%
AATTCTCACCTAGAAGAGTA+TGG - chr5_4:15715878-15715897 None:intergenic 35.0%
!!! TTATGTTTTAGCGAAAGGGA+AGG + chr5_4:15716084-15716103 Msa0840130:intron 35.0%
! ATAATAGGGAGCATGACATA+GGG - chr5_4:15716152-15716171 None:intergenic 35.0%
! AATAATAGGGAGCATGACAT+AGG - chr5_4:15716153-15716172 None:intergenic 35.0%
ATGTCATGCTCCCTATTATT+AGG + chr5_4:15716153-15716172 Msa0840130:intron 35.0%
TGTCATGCTCCCTATTATTA+GGG + chr5_4:15716154-15716173 Msa0840130:intron 35.0%
!!! GACTTTATTTTACTGATGGC+TGG + chr5_4:15716262-15716281 Msa0840130:intron 35.0%
!!! CTTTTGGGAGTATTGTAGAT+AGG - chr5_4:15716405-15716424 None:intergenic 35.0%
CTATCTACAATACTCCCAAA+AGG + chr5_4:15716403-15716422 Msa0840130:intron 35.0%
!! CATTGTCAAGATTTGGTGTA+GGG - chr5_4:15716544-15716563 None:intergenic 35.0%
!! TCATTGTCAAGATTTGGTGT+AGG - chr5_4:15716545-15716564 None:intergenic 35.0%
TCTTGCATTTAAAGACCACA+TGG + chr5_4:15716590-15716609 Msa0840130:intron 35.0%
! CACAAATAGCAGAAGGATTT+TGG - chr5_4:15716802-15716821 None:intergenic 35.0%
CTATGCCTGTTCTATTCTAA+AGG + chr5_4:15716926-15716945 Msa0840130:intron 35.0%
CGTATTCGAATGCTTTCTAT+TGG - chr5_4:15717048-15717067 None:intergenic 35.0%
ACAGCAAAGTGAAGTAATTG+AGG - chr5_4:15717276-15717295 None:intergenic 35.0%
GATAGAAAGGAAACAATTCG+TGG - chr5_4:15717500-15717519 None:intergenic 35.0%
TACTATCCTCATGTTCGTTA+TGG + chr5_4:15717527-15717546 Msa0840130:five_prime_UTR 35.0%
!!! TGTCGTTGATTTTGTTTGTC+AGG + chr5_4:15717631-15717650 Msa0840130:five_prime_UTR 35.0%
!!! GTCGTTGATTTTGTTTGTCA+GGG + chr5_4:15717632-15717651 Msa0840130:five_prime_UTR 35.0%
AGTCTTAGAAAGCAGTCTTA+TGG - chr5_4:15717895-15717914 None:intergenic 35.0%
! TTGCAGTTTTCAGCCAATTT+TGG + chr5_4:15717947-15717966 Msa0840130:CDS 35.0%
!! TTTTCACCAACGGCTTTAAT+CGG + chr5_4:15718006-15718025 Msa0840130:intron 35.0%
AGCTGATGTTGACAAAACTT+AGG - chr5_4:15718054-15718073 None:intergenic 35.0%
!! AGTTTTGTCAACATCAGCTA+AGG + chr5_4:15718055-15718074 Msa0840130:intron 35.0%
ATTTATGCCAACCATGTAGA+GGG + chr5_4:15718312-15718331 Msa0840130:CDS 35.0%
ATTGTTTAATGCCCTCTACA+TGG - chr5_4:15718326-15718345 None:intergenic 35.0%
GAGTTGTGTTGTGTTGTGTT+GGG - chr5_4:15714084-15714103 None:intergenic 40.0%
AGAGTTGTGTTGTGTTGTGT+TGG - chr5_4:15714085-15714104 None:intergenic 40.0%
! GTCTGTTTGGTTTAGGATTG+AGG - chr5_4:15714155-15714174 None:intergenic 40.0%
GAGGGTTAGAACTATTTGGT+TGG - chr5_4:15714331-15714350 None:intergenic 40.0%
CCAAGAGGGTTAGAACTATT+TGG - chr5_4:15714335-15714354 None:intergenic 40.0%
!! CCAAATAGTTCTAACCCTCT+TGG + chr5_4:15714332-15714351 Msa0840130:five_prime_UTR 40.0%
!!! GGTGGCCCTTTTAATTTGTA+TGG - chr5_4:15714457-15714476 None:intergenic 40.0%
!! AATACTCGAGCTTTGAACCT+CGG + chr5_4:15714518-15714537 Msa0840130:five_prime_UTR 40.0%
GATAAAGAGAAGGAGGAAAG+TGG - chr5_4:15714725-15714744 None:intergenic 40.0%
TGAAGGAGATAAAGAGAAGG+AGG - chr5_4:15714732-15714751 None:intergenic 40.0%
TCCTTCTCTTTATCTCCTTC+AGG + chr5_4:15714731-15714750 Msa0840130:five_prime_UTR 40.0%
CCTTCTCTTTATCTCCTTCA+GGG + chr5_4:15714732-15714751 Msa0840130:five_prime_UTR 40.0%
GATAAAGAGGATTCAGCTGA+AGG - chr5_4:15714779-15714798 None:intergenic 40.0%
GGAACCAAAAGGAGATAAAG+AGG - chr5_4:15714792-15714811 None:intergenic 40.0%
TGGTATAAATTCCCAGGAAC+GGG - chr5_4:15714813-15714832 None:intergenic 40.0%
GTGGTATAAATTCCCAGGAA+CGG - chr5_4:15714814-15714833 None:intergenic 40.0%
AAGGAGGAACAATCTGAAGA+AGG - chr5_4:15714923-15714942 None:intergenic 40.0%
AGAACCTCAAGTAGCAAAAG+AGG - chr5_4:15714996-15715015 None:intergenic 40.0%
! TTTGCTACTTGAGGTTCTTC+AGG + chr5_4:15714998-15715017 Msa0840130:five_prime_UTR 40.0%
TCTGAGGAATTATGGAAGCA+TGG + chr5_4:15715394-15715413 Msa0840130:five_prime_UTR 40.0%
! CTGAGGAATTATGGAAGCAT+GGG + chr5_4:15715395-15715414 Msa0840130:five_prime_UTR 40.0%
!! TTGATGATGCATGTGAGTGA+AGG + chr5_4:15715598-15715617 Msa0840130:five_prime_UTR 40.0%
! AGTGAAGGTGTAATGGTAGA+AGG + chr5_4:15715613-15715632 Msa0840130:five_prime_UTR 40.0%
! GTGAAGGTGTAATGGTAGAA+GGG + chr5_4:15715614-15715633 Msa0840130:five_prime_UTR 40.0%
! GGTTATCAATCTGGCTTACA+AGG - chr5_4:15715693-15715712 None:intergenic 40.0%
TATGCAAAAACAGCATCGCA+CGG - chr5_4:15715762-15715781 None:intergenic 40.0%
TACCCTGTTTGATGTTTCAC+AGG + chr5_4:15715839-15715858 Msa0840130:five_prime_UTR 40.0%
GACTATGTCCATACTCTTCT+AGG + chr5_4:15715867-15715886 Msa0840130:five_prime_UTR 40.0%
GGTTGTCTGGATACATTTCA+AGG + chr5_4:15716105-15716124 Msa0840130:intron 40.0%
TAACTGAATTCGTGTGCTCA+AGG + chr5_4:15716723-15716742 Msa0840130:intron 40.0%
TTGAGCACACAAATAGCAGA+AGG - chr5_4:15716809-15716828 None:intergenic 40.0%
ACAACACAAACCCTAATGCT+AGG - chr5_4:15717332-15717351 None:intergenic 40.0%
AAAAAGTAACTCGGGACAAG+AGG - chr5_4:15717401-15717420 None:intergenic 40.0%
CAATTGTTGCCTGGAATACA+CGG - chr5_4:15717778-15717797 None:intergenic 40.0%
AATTTCCTCCAATTGTTGCC+TGG - chr5_4:15717787-15717806 None:intergenic 40.0%
GCATGATAAAGTTACTGCAG+TGG + chr5_4:15717918-15717937 Msa0840130:exon 40.0%
GATAAAGTTACTGCAGTGGT+TGG + chr5_4:15717922-15717941 Msa0840130:CDS 40.0%
! GGGGGTACAAATACCAAAAT+TGG - chr5_4:15717963-15717982 None:intergenic 40.0%
! GATTAAAGCCGTTGGTGAAA+AGG - chr5_4:15718007-15718026 None:intergenic 40.0%
TAAGAAAGCTGAGGAACAGA+AGG + chr5_4:15718094-15718113 Msa0840130:CDS 40.0%
CTATGCAGGTAATGCATACT+TGG + chr5_4:15718204-15718223 Msa0840130:intron 40.0%
CAGGTAATGCATACTTGGTT+TGG + chr5_4:15718209-15718228 Msa0840130:intron 40.0%
GATTTATGCCAACCATGTAG+AGG + chr5_4:15718311-15718330 Msa0840130:CDS 40.0%
TTTAATGCCCTCTACATGGT+TGG - chr5_4:15718322-15718341 None:intergenic 40.0%
!! GAGGGCATTAAACAATTCCT+TGG + chr5_4:15718330-15718349 Msa0840130:CDS 40.0%
!! CTAATGTGTTGTTTATGGCC+AGG + chr5_4:15718397-15718416 Msa0840130:CDS 40.0%
!! TTGGTTGGTGAGATCTGTGA+TGG - chr5_4:15714316-15714335 None:intergenic 45.0%
TTGGTGAGATCTACCCAAGA+GGG - chr5_4:15714349-15714368 None:intergenic 45.0%
TTTGGTGAGATCTACCCAAG+AGG - chr5_4:15714350-15714369 None:intergenic 45.0%
!! TTTAGCTTTGGTGGCATCAG+TGG - chr5_4:15714482-15714501 None:intergenic 45.0%
!! GTTGATGGCTTTAGCTTTGG+TGG - chr5_4:15714491-15714510 None:intergenic 45.0%
!! ATACTCGAGCTTTGAACCTC+GGG + chr5_4:15714519-15714538 Msa0840130:five_prime_UTR 45.0%
CCAGAAGAAAGGAGTCAACA+TGG - chr5_4:15714549-15714568 None:intergenic 45.0%
!! CCATGTTGACTCCTTTCTTC+TGG + chr5_4:15714546-15714565 Msa0840130:five_prime_UTR 45.0%
TAGTTACAGACAAGAGGGTG+AGG - chr5_4:15714582-15714601 None:intergenic 45.0%
CCCTGAAGGAGATAAAGAGA+AGG - chr5_4:15714735-15714754 None:intergenic 45.0%
AGCTGAAGGAGGAGATAAAG+GGG - chr5_4:15714765-15714784 None:intergenic 45.0%
CAGCTGAAGGAGGAGATAAA+GGG - chr5_4:15714766-15714785 None:intergenic 45.0%
TCAGCTGAAGGAGGAGATAA+AGG - chr5_4:15714767-15714786 None:intergenic 45.0%
AAAGAGGATTCAGCTGAAGG+AGG - chr5_4:15714776-15714795 None:intergenic 45.0%
ATCTGAAGAAGGAGCAGAAG+AGG - chr5_4:15714912-15714931 None:intergenic 45.0%
GCTCAAGTAAATGGAGGTGA+AGG - chr5_4:15714962-15714981 None:intergenic 45.0%
!! TCCTCCTCTTTTGCTACTTG+AGG + chr5_4:15714989-15715008 Msa0840130:five_prime_UTR 45.0%
ACCTCAAGTAGCAAAAGAGG+AGG - chr5_4:15714993-15715012 None:intergenic 45.0%
! GCATGTGAGTGAAGGTGTAA+TGG + chr5_4:15715606-15715625 Msa0840130:five_prime_UTR 45.0%
GTTTCACTATCCTATGCCCT+TGG + chr5_4:15715810-15715829 Msa0840130:five_prime_UTR 45.0%
TTCAAGGCAGTACGTAATGC+AGG + chr5_4:15716121-15716140 Msa0840130:intron 45.0%
GGCTGCGCATTAATGAGTAT+AGG - chr5_4:15716781-15716800 None:intergenic 45.0%
!! GCACGCCTTTAGAATAGAAC+AGG - chr5_4:15716934-15716953 None:intergenic 45.0%
TGTCTGATGTGAGTGATGTC+AGG + chr5_4:15717295-15717314 Msa0840130:intron 45.0%
CAAAGGCTCCAGCAAAGATA+TGG - chr5_4:15717603-15717622 None:intergenic 45.0%
! TTTGCTGGAGCCTTTGACTT+CGG + chr5_4:15717607-15717626 Msa0840130:five_prime_UTR 45.0%
TCAACGACATCCGAAGTCAA+AGG - chr5_4:15717620-15717639 None:intergenic 45.0%
TACCGTAGCTGTTGCTATGA+GGG - chr5_4:15717660-15717679 None:intergenic 45.0%
TTACCGTAGCTGTTGCTATG+AGG - chr5_4:15717661-15717680 None:intergenic 45.0%
CATAGCAACAGCTACGGTAA+TGG + chr5_4:15717661-15717680 Msa0840130:five_prime_UTR 45.0%
CGTGTATTCCAGGCAACAAT+TGG + chr5_4:15717776-15717795 Msa0840130:intron 45.0%
GTATTCCAGGCAACAATTGG+AGG + chr5_4:15717779-15717798 Msa0840130:intron 45.0%
TGACGATACCATGAGCAAGA+TGG + chr5_4:15717821-15717840 Msa0840130:five_prime_UTR 45.0%
GACGATACCATGAGCAAGAT+GGG + chr5_4:15717822-15717841 Msa0840130:five_prime_UTR 45.0%
AATTGCACCCATCTTGCTCA+TGG - chr5_4:15717832-15717851 None:intergenic 45.0%
! GAGCAAGATGGGTGCAATTT+TGG + chr5_4:15717833-15717852 Msa0840130:five_prime_UTR 45.0%
!! ATGGGTGCAATTTTGGCATC+CGG + chr5_4:15717840-15717859 Msa0840130:five_prime_UTR 45.0%
CATTTCTTCCACCAGCATCA+AGG - chr5_4:15717869-15717888 None:intergenic 45.0%
!! AAGCTTGGCCTTTTCACCAA+CGG + chr5_4:15717996-15718015 Msa0840130:intron 45.0%
TTCAGACCGATTAAAGCCGT+TGG - chr5_4:15718015-15718034 None:intergenic 45.0%
TTTCTTACTAGCCCTCGCTT+TGG - chr5_4:15718081-15718100 None:intergenic 45.0%
! ACTTGGAGCTGATCTAGAGT+CGG - chr5_4:15718144-15718163 None:intergenic 45.0%
AAGACTTCCAGTGAGAAGGA+TGG + chr5_4:15718176-15718195 Msa0840130:CDS 45.0%
GTTGGCATAAATCAGACCGA+GGG - chr5_4:15718304-15718323 None:intergenic 45.0%
TATGGCCAGGTCATTCAACA+TGG + chr5_4:15718410-15718429 Msa0840130:CDS 45.0%
ATGCACCATGTTGAATGACC+TGG - chr5_4:15718418-15718437 None:intergenic 45.0%
GAGTCAACATGGATATCCCG+AGG - chr5_4:15714538-15714557 None:intergenic 50.0%
GAAGTGGATCTGCGCAGTAA+CGG - chr5_4:15714626-15714645 None:intergenic 50.0%
TCCACTTCCGTAGTGTGGTT+TGG + chr5_4:15714638-15714657 Msa0840130:five_prime_UTR 50.0%
ACCAAACCACACTACGGAAG+TGG - chr5_4:15714642-15714661 None:intergenic 50.0%
! AAAGGGGGTTCTAACCCTGA+AGG - chr5_4:15714749-15714768 None:intergenic 50.0%
GCTGAAGGAGGAGATAAAGG+GGG - chr5_4:15714764-15714783 None:intergenic 50.0%
!!! TCCTTTTGGTTCCCGTTCCT+GGG + chr5_4:15714799-15714818 Msa0840130:intron 50.0%
AGAAGAGGAGGAGAATGCTG+AGG - chr5_4:15714897-15714916 None:intergenic 50.0%
TGAAGAAGGAGCAGAAGAGG+AGG - chr5_4:15714909-15714928 None:intergenic 50.0%
! AAACAGGGTACCAGCTCCAA+GGG - chr5_4:15715829-15715848 None:intergenic 50.0%
TAGCGAAAGGGAAGGTTGTC+TGG + chr5_4:15716092-15716111 Msa0840130:intron 50.0%
CTGATGTGAGTGATGTCAGG+AGG + chr5_4:15717298-15717317 Msa0840130:intron 50.0%
GTTGTACTCTGATCCAGAGC+AGG + chr5_4:15717347-15717366 Msa0840130:intron 50.0%
ATTCGTGGAGTCTGCAGTGT+AGG - chr5_4:15717485-15717504 None:intergenic 50.0%
GCTGCTCCATAACGAACATG+AGG - chr5_4:15717536-15717555 None:intergenic 50.0%
TTATGGAGCAGCTCTTGCTG+TGG + chr5_4:15717544-15717563 Msa0840130:five_prime_UTR 50.0%
! TATGGAGCAGCTCTTGCTGT+GGG + chr5_4:15717545-15717564 Msa0840130:five_prime_UTR 50.0%
TGCTGTGGGTATTTCCTGTG+CGG + chr5_4:15717559-15717578 Msa0840130:five_prime_UTR 50.0%
CAGTGAGGCCATATCTTTGC+TGG + chr5_4:15717592-15717611 Msa0840130:five_prime_UTR 50.0%
TGCCCTCATAGCAACAGCTA+CGG + chr5_4:15717655-15717674 Msa0840130:five_prime_UTR 50.0%
CAGATCAGTGATTCGCGTGT+TGG + chr5_4:15717686-15717705 Msa0840130:five_prime_UTR 50.0%
ATTCGCGTGTTGGAACCTTC+AGG + chr5_4:15717696-15717715 Msa0840130:five_prime_UTR 50.0%
CGTGTTGGAACCTTCAGGTA+AGG + chr5_4:15717701-15717720 Msa0840130:intron 50.0%
TCTGACATGCCGTGTATTCC+AGG + chr5_4:15717766-15717785 Msa0840130:intron 50.0%
TCCACCAGCATCAAGGATTC+CGG - chr5_4:15717862-15717881 None:intergenic 50.0%
ATCAGCTAAGGCCAAAGCGA+GGG + chr5_4:15718067-15718086 Msa0840130:intron 50.0%
! GAGGGCTAGTAAGAAAGCTG+AGG + chr5_4:15718085-15718104 Msa0840130:CDS 50.0%
! CTTGGAGCTGATCTAGAGTC+GGG - chr5_4:15718143-15718162 None:intergenic 50.0%
TCTAGATCAGCTCCAAGTGC+TGG + chr5_4:15718146-15718165 Msa0840130:CDS 50.0%
!! TCAGCTCCAAGTGCTGGAAA+AGG + chr5_4:15718152-15718171 Msa0840130:CDS 50.0%
!! CAGCTCCAAGTGCTGGAAAA+GGG + chr5_4:15718153-15718172 Msa0840130:CDS 50.0%
! GTCTTCCCTTTTCCAGCACT+TGG - chr5_4:15718161-15718180 None:intergenic 50.0%
AGGGAAGACTTCCAGTGAGA+AGG + chr5_4:15718172-15718191 Msa0840130:CDS 50.0%
AGCTTCTCCATCCTTCTCAC+TGG - chr5_4:15718186-15718205 None:intergenic 50.0%
GAAGGATGGAGAAGCTATGC+AGG + chr5_4:15718190-15718209 Msa0840130:CDS 50.0%
GGTGGTAGTCCATACTCAGA+AGG + chr5_4:15718264-15718283 Msa0840130:CDS 50.0%
GGTAGTCCATACTCAGAAGG+TGG + chr5_4:15718267-15718286 Msa0840130:CDS 50.0%
! AGAGCACCACCTTCTGAGTA+TGG - chr5_4:15718276-15718295 None:intergenic 50.0%
GGTTGGCATAAATCAGACCG+AGG - chr5_4:15718305-15718324 None:intergenic 50.0%
CTTGCGCAGCATTACTGTTG+AGG + chr5_4:15718359-15718378 Msa0840130:CDS 50.0%
GCAGATCCACTTCCGTAGTG+TGG + chr5_4:15714633-15714652 Msa0840130:five_prime_UTR 55.0%
!!! CTCCTTTTGGTTCCCGTTCC+TGG + chr5_4:15714798-15714817 Msa0840130:intron 55.0%
TCCCAGGAACGGGAACCAAA+AGG - chr5_4:15714803-15714822 None:intergenic 55.0%
CTATCCTATGCCCTTGGAGC+TGG + chr5_4:15715816-15715835 Msa0840130:five_prime_UTR 55.0%
! CAAACAGGGTACCAGCTCCA+AGG - chr5_4:15715830-15715849 None:intergenic 55.0%
GAGTGATGTCAGGAGGACTG+CGG + chr5_4:15717305-15717324 Msa0840130:intron 55.0%
AGGACTGCGGTCCTAGCATT+AGG + chr5_4:15717318-15717337 Msa0840130:intron 55.0%
GGACTGCGGTCCTAGCATTA+GGG + chr5_4:15717319-15717338 Msa0840130:intron 55.0%
! AGGACAGAACTAGCCTGCTC+TGG - chr5_4:15717363-15717382 None:intergenic 55.0%
GCTGTGGGTATTTCCTGTGC+GGG + chr5_4:15717560-15717579 Msa0840130:five_prime_UTR 55.0%
GGTATTTCCTGTGCGGGTAC+AGG + chr5_4:15717566-15717585 Msa0840130:five_prime_UTR 55.0%
GCATCCGGAATCCTTGATGC+TGG + chr5_4:15717855-15717874 Msa0840130:five_prime_UTR 55.0%
TCCGGAATCCTTGATGCTGG+TGG + chr5_4:15717858-15717877 Msa0840130:five_prime_UTR 55.0%
CATCAGCTAAGGCCAAAGCG+AGG + chr5_4:15718066-15718085 Msa0840130:intron 55.0%
TTTGGCACCCTACTTGCCTC+AGG + chr5_4:15718227-15718246 Msa0840130:intron 55.0%
TTGGCACCCTACTTGCCTCA+GGG + chr5_4:15718228-15718247 Msa0840130:intron 55.0%
GGTGGTGCTCTTTATGCCCT+CGG + chr5_4:15718285-15718304 Msa0840130:CDS 55.0%
TGCTGCGCAAGCTATCACCA+AGG - chr5_4:15718350-15718369 None:intergenic 55.0%
! TTGGTGGCATCAGTGGCTGG+TGG - chr5_4:15714475-15714494 None:intergenic 60.0%
! GCTTTGGTGGCATCAGTGGC+TGG - chr5_4:15714478-15714497 None:intergenic 60.0%
! GGTACCAGCTCCAAGGGCAT+AGG - chr5_4:15715823-15715842 None:intergenic 60.0%
TCTTGACCAGCGCTATCGCG+CGG - chr5_4:15717179-15717198 None:intergenic 60.0%
ACTGAGACCTGTACCCGCAC+AGG - chr5_4:15717576-15717595 None:intergenic 60.0%
TGCGGGTACAGGTCTCAGTG+AGG + chr5_4:15717577-15717596 Msa0840130:five_prime_UTR 60.0%
CACCCTACTTGCCTCAGGGT+GGG + chr5_4:15718232-15718251 Msa0840130:intron 60.0%
GTCCCACCCTGAGGCAAGTA+GGG - chr5_4:15718237-15718256 None:intergenic 60.0%
AGTCCCACCCTGAGGCAAGT+AGG - chr5_4:15718238-15718257 None:intergenic 60.0%
TACTTGCCTCAGGGTGGGAC+TGG + chr5_4:15718237-15718256 Msa0840130:intron 60.0%
AAAGACCCGCGCGATAGCGC+TGG + chr5_4:15717170-15717189 Msa0840130:intron 65.0%
CTTGACCAGCGCTATCGCGC+GGG - chr5_4:15717178-15717197 None:intergenic 65.0%
GCACCCTACTTGCCTCAGGG+TGG + chr5_4:15718231-15718250 Msa0840130:intron 65.0%
TTGCCTCAGGGTGGGACTGG+TGG + chr5_4:15718240-15718259 Msa0840130:intron 65.0%
CCACCACCAGTCCCACCCTG+AGG - chr5_4:15718246-15718265 None:intergenic 70.0%
! CCTCAGGGTGGGACTGGTGG+TGG + chr5_4:15718243-15718262 Msa0840130:intron 70.0%
!! CAGGGTGGGACTGGTGGTGG+TGG + chr5_4:15718246-15718265 Msa0840130:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 15713975 15718443 15713975 ID=Msa0840130;Name=Msa0840130
chr5_4 mRNA 15713975 15718443 15713975 ID=Msa0840130-mRNA-1;Parent=Msa0840130;Name=Msa0840130-mRNA-1;_AED=0.33;_eAED=0.34;_QI=2073|0.66|0.71|1|0.33|0.42|7|0|127
chr5_4 exon 15713975 15714753 15713975 ID=Msa0840130-mRNA-1:exon:6737;Parent=Msa0840130-mRNA-1
chr5_4 exon 15714930 15715038 15714930 ID=Msa0840130-mRNA-1:exon:6738;Parent=Msa0840130-mRNA-1
chr5_4 exon 15715060 15715888 15715060 ID=Msa0840130-mRNA-1:exon:6739;Parent=Msa0840130-mRNA-1
chr5_4 exon 15717494 15717717 15717494 ID=Msa0840130-mRNA-1:exon:6740;Parent=Msa0840130-mRNA-1
chr5_4 exon 15717788 15717968 15717788 ID=Msa0840130-mRNA-1:exon:6741;Parent=Msa0840130-mRNA-1
chr5_4 exon 15718072 15718211 15718072 ID=Msa0840130-mRNA-1:exon:6742;Parent=Msa0840130-mRNA-1
chr5_4 exon 15718249 15718443 15718249 ID=Msa0840130-mRNA-1:exon:6743;Parent=Msa0840130-mRNA-1
chr5_4 five_prime_UTR 15713975 15714753 15713975 ID=Msa0840130-mRNA-1:five_prime_utr;Parent=Msa0840130-mRNA-1
chr5_4 five_prime_UTR 15714930 15715038 15714930 ID=Msa0840130-mRNA-1:five_prime_utr;Parent=Msa0840130-mRNA-1
chr5_4 five_prime_UTR 15715060 15715888 15715060 ID=Msa0840130-mRNA-1:five_prime_utr;Parent=Msa0840130-mRNA-1
chr5_4 five_prime_UTR 15717494 15717717 15717494 ID=Msa0840130-mRNA-1:five_prime_utr;Parent=Msa0840130-mRNA-1
chr5_4 five_prime_UTR 15717788 15717919 15717788 ID=Msa0840130-mRNA-1:five_prime_utr;Parent=Msa0840130-mRNA-1
chr5_4 CDS 15717920 15717968 15717920 ID=Msa0840130-mRNA-1:cds;Parent=Msa0840130-mRNA-1
chr5_4 CDS 15718072 15718211 15718072 ID=Msa0840130-mRNA-1:cds;Parent=Msa0840130-mRNA-1
chr5_4 CDS 15718249 15718443 15718249 ID=Msa0840130-mRNA-1:cds;Parent=Msa0840130-mRNA-1
Gene Sequence

>Msa0840130

ATGATAAAGTTACTGCAGTGGTTGGTCTTGCAGTTTTCAGCCAATTTTGCTAAGGCCAAAGCGAGGGCTAGTAAGAAAGCTGAGGAACAGAAGGCTAATGCTGAAATTGCATCTACTCCCGACTCTAGATCAGCTCCAAGTGCTGGAAAAGGGAAGACTTCCAGTGAGAAGGATGGAGAAGCTATGCAGGGTGGGACTGGTGGTGGTGGTAGTCCATACTCAGAAGGTGGTGCTCTTTATGCCCTCGGTCTGATTTATGCCAACCATGTAGAGGGCATTAAACAATTCCTTGGTGATAGCTTGCGCAGCATTACTGTTGAGGTGCTGATAAATCTATCTAATGTGTTGTTTATGGCCAGGTCATTCAACATGGTGCATGCCTAG
Protein sequence

>Msa0840130

MIKLLQWLVLQFSANFAKAKARASKKAEEQKANAEIASTPDSRSAPSAGKGKTSSEKDGEAMQGGTGGGGSPYSEGGALYALGLIYANHVEGIKQFLGDSLRSITVEVLINLSNVLFMARSFNMVHA*