Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840230 | MBA0681410.1 | 81.503 | 173 | 25 | 3 | 113 | 281 | 14 | 183 | 1.23e-84 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840230 | sp|O48844|PSD1A_ARATH | 76.804 | 194 | 34 | 5 | 96 | 281 | 572 | 762 | 2.45e-82 | 270 |
| Msa0840230 | sp|O48844|PSD1A_ARATH | 59.155 | 71 | 18 | 1 | 59 | 129 | 63 | 122 | 5.29e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840230 | A0A7J8X2R7 | 81.503 | 173 | 25 | 3 | 113 | 281 | 14 | 183 | 5.87e-85 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0840130 | Msa0840230 | 0.912353 | 2.146889e-83 | -8.615850e-47 |
| Msa0840180 | Msa0840230 | 0.846116 | 2.657572e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840230 | MtrunA17_Chr8g0392281 | 88.199 | 161 | 12 | 3 | 125 | 281 | 606 | 763 | 1.78e-83 | 270 |
| Msa0840230 | MtrunA17_Chr8g0392281 | 64.286 | 70 | 14 | 1 | 59 | 128 | 63 | 121 | 2.59e-16 | 79.0 |
| Msa0840230 | MtrunA17_Chr2g0311201 | 86.957 | 161 | 14 | 3 | 125 | 281 | 604 | 761 | 1.34e-81 | 265 |
| Msa0840230 | MtrunA17_Chr2g0311201 | 58.333 | 84 | 24 | 1 | 45 | 128 | 49 | 121 | 8.53e-17 | 80.5 |
| Msa0840230 | MtrunA17_Chr2g0329091 | 64.815 | 108 | 13 | 3 | 2 | 84 | 207 | 314 | 4.49e-31 | 121 |
| Msa0840230 | MtrunA17_Chr4g0033061 | 51.923 | 104 | 29 | 2 | 2 | 84 | 203 | 306 | 4.72e-23 | 98.6 |
| Msa0840230 | MtrunA17_Chr3g0079871 | 84.444 | 45 | 5 | 1 | 84 | 128 | 105 | 147 | 4.05e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840230 | AT2G32730.1 | 76.804 | 194 | 34 | 5 | 96 | 281 | 572 | 762 | 2.49e-83 | 270 |
| Msa0840230 | AT2G32730.1 | 59.155 | 71 | 18 | 1 | 59 | 129 | 63 | 122 | 5.37e-15 | 75.5 |
| Msa0840230 | AT1G04810.1 | 76.804 | 194 | 34 | 5 | 96 | 281 | 572 | 762 | 2.51e-83 | 270 |
| Msa0840230 | AT1G04810.1 | 73.913 | 46 | 10 | 1 | 84 | 129 | 79 | 122 | 1.63e-13 | 70.9 |
| Msa0840230 | AT5G12900.1 | 40.909 | 110 | 36 | 4 | 3 | 84 | 179 | 287 | 1.17e-13 | 71.2 |
Find 67 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAGATTCTGTTCTATT+TGG | 0.167279 | 5_4:+15821191 | None:intergenic |
| GAGCAAGATGGGTGCAATTT+TGG | 0.199961 | 5_4:-15818736 | Msa0840230:CDS |
| GAAACAAAAGCTAGAGTATT+TGG | 0.239162 | 5_4:-15821056 | Msa0840230:CDS |
| GAACAGAATCTGAGGAATTA+TGG | 0.291292 | 5_4:-15821184 | Msa0840230:CDS |
| GACTATGTCCATACTCTTCT+AGG | 0.326578 | 5_4:-15820703 | Msa0840230:intron |
| AGGACTGCGGTCCTAGCATT+AGG | 0.329300 | 5_4:-15819249 | Msa0840230:CDS |
| AAAGTAAAGGGATGATTTCA+TGG | 0.347795 | 5_4:-15821222 | Msa0840230:CDS |
| CAGTGAGGCCATATCTTTGC+TGG | 0.357349 | 5_4:-15818977 | Msa0840230:CDS |
| TCCACCAGCATCAAGGATTC+CGG | 0.369050 | 5_4:+15818710 | None:intergenic |
| ATATGCTAGTTTCAAGTCTA+AGG | 0.370644 | 5_4:-15819322 | Msa0840230:CDS |
| TACTATCCTCATGTTCGTTA+TGG | 0.379402 | 5_4:-15819042 | Msa0840230:CDS |
| GTTTGATGTTTCACAGGATT+CGG | 0.386783 | 5_4:-15820725 | Msa0840230:CDS |
| AGTCTTAGAAAGCAGTCTTA+TGG | 0.387317 | 5_4:+15818677 | None:intergenic |
| CAAAGGCTCCAGCAAAGATA+TGG | 0.396501 | 5_4:+15818969 | None:intergenic |
| TTTGCTGGAGCCTTTGACTT+CGG | 0.397652 | 5_4:-15818962 | Msa0840230:CDS |
| ATTCGCGTGTTGGAACCTTC+AGG | 0.407002 | 5_4:-15818873 | Msa0840230:intron |
| GTTTCACTATCCTATGCCCT+TGG | 0.415624 | 5_4:-15820760 | Msa0840230:CDS |
| AATTCTCACCTAGAAGAGTA+TGG | 0.416307 | 5_4:+15820695 | None:intergenic |
| GGACTGCGGTCCTAGCATTA+GGG | 0.417017 | 5_4:-15819248 | Msa0840230:CDS |
| GGTATTTCCTGTGCGGGTAC+AGG | 0.428085 | 5_4:-15819003 | Msa0840230:CDS |
| CGTGTATTCCAGGCAACAAT+TGG | 0.442928 | 5_4:-15818793 | Msa0840230:intron |
| AAACACAACACAAAAGTAAA+GGG | 0.447042 | 5_4:-15821234 | Msa0840230:CDS |
| TCTGAGATGAGATCTTCATT+TGG | 0.455506 | 5_4:-15821085 | Msa0840230:CDS |
| AATCCTGTGAAACATCAAAC+AGG | 0.456577 | 5_4:+15820728 | None:intergenic |
| TACCCTGTTTGATGTTTCAC+AGG | 0.458808 | 5_4:-15820731 | Msa0840230:CDS |
| CTATCCTATGCCCTTGGAGC+TGG | 0.468642 | 5_4:-15820754 | Msa0840230:CDS |
| ATAGTATGATTCTGATAGAA+AGG | 0.474928 | 5_4:+15819059 | None:intergenic |
| CAAACACAACACAAAAGTAA+AGG | 0.476996 | 5_4:-15821235 | Msa0840230:CDS |
| CAGATCAGTGATTCGCGTGT+TGG | 0.484025 | 5_4:-15818883 | Msa0840230:CDS |
| TTACCGTAGCTGTTGCTATG+AGG | 0.485433 | 5_4:+15818911 | None:intergenic |
| TGTCTGATGTGAGTGATGTC+AGG | 0.488685 | 5_4:-15819272 | Msa0840230:CDS |
| AGGACAGAACTAGCCTGCTC+TGG | 0.489097 | 5_4:+15819207 | None:intergenic |
| CATAGCAACAGCTACGGTAA+TGG | 0.493331 | 5_4:-15818908 | Msa0840230:CDS |
| CATTTCTTCCACCAGCATCA+AGG | 0.505426 | 5_4:+15818703 | None:intergenic |
| CTGAGGAATTATGGAAGCAT+GGG | 0.513099 | 5_4:-15821175 | Msa0840230:CDS |
| GACGATACCATGAGCAAGAT+GGG | 0.515729 | 5_4:-15818747 | Msa0840230:CDS |
| TCTGAGGAATTATGGAAGCA+TGG | 0.533004 | 5_4:-15821176 | Msa0840230:CDS |
| TACCGTAGCTGTTGCTATGA+GGG | 0.533316 | 5_4:+15818912 | None:intergenic |
| ACAGCAAAGTGAAGTAATTG+AGG | 0.545711 | 5_4:+15819294 | None:intergenic |
| GCATCCGGAATCCTTGATGC+TGG | 0.547006 | 5_4:-15818714 | Msa0840230:CDS |
| GCTGTGGGTATTTCCTGTGC+GGG | 0.551364 | 5_4:-15819009 | Msa0840230:CDS |
| TTATGGAGCAGCTCTTGCTG+TGG | 0.551926 | 5_4:-15819025 | Msa0840230:CDS |
| ACTGAGACCTGTACCCGCAC+AGG | 0.553691 | 5_4:+15818996 | None:intergenic |
| TGACGATACCATGAGCAAGA+TGG | 0.556530 | 5_4:-15818748 | Msa0840230:CDS |
| GATAGAAAGGAAACAATTCG+TGG | 0.558337 | 5_4:+15819072 | None:intergenic |
| GGTACCAGCTCCAAGGGCAT+AGG | 0.568730 | 5_4:+15820750 | None:intergenic |
| CAAAAGCTAGAGTATTTGGA+AGG | 0.577000 | 5_4:-15821052 | Msa0840230:intron |
| TCCGGAATCCTTGATGCTGG+TGG | 0.577058 | 5_4:-15818711 | Msa0840230:CDS |
| GTATTCCAGGCAACAATTGG+AGG | 0.577312 | 5_4:-15818790 | Msa0840230:intron |
| TATGGAGCAGCTCTTGCTGT+GGG | 0.579058 | 5_4:-15819024 | Msa0840230:CDS |
| GTTGTACTCTGATCCAGAGC+AGG | 0.579451 | 5_4:-15819220 | Msa0840230:CDS |
| TGCTGTGGGTATTTCCTGTG+CGG | 0.582512 | 5_4:-15819010 | Msa0840230:CDS |
| AAACAGGGTACCAGCTCCAA+GGG | 0.584022 | 5_4:+15820744 | None:intergenic |
| AATTGCACCCATCTTGCTCA+TGG | 0.584856 | 5_4:+15818740 | None:intergenic |
| AAAGTGAAGTAATTGAGGAA+TGG | 0.585373 | 5_4:+15819299 | None:intergenic |
| GATAAAGTTACTGCAGTGGT+TGG | 0.586930 | 5_4:-15818647 | Msa0840230:three_prime_UTR |
| ACCAAATAGAACAGAATCTG+AGG | 0.589010 | 5_4:-15821192 | Msa0840230:CDS |
| CAAACAGGGTACCAGCTCCA+AGG | 0.592644 | 5_4:+15820743 | None:intergenic |
| ACAACACAAACCCTAATGCT+AGG | 0.596603 | 5_4:+15819238 | None:intergenic |
| TCAACGACATCCGAAGTCAA+AGG | 0.597144 | 5_4:+15818952 | None:intergenic |
| GCATGATAAAGTTACTGCAG+TGG | 0.616842 | 5_4:-15818651 | Msa0840230:three_prime_UTR |
| TGCCCTCATAGCAACAGCTA+CGG | 0.631214 | 5_4:-15818914 | Msa0840230:CDS |
| GCTGCTCCATAACGAACATG+AGG | 0.668232 | 5_4:+15819036 | None:intergenic |
| TGCGGGTACAGGTCTCAGTG+AGG | 0.700207 | 5_4:-15818992 | Msa0840230:CDS |
| CTGATGTGAGTGATGTCAGG+AGG | 0.703891 | 5_4:-15819269 | Msa0840230:CDS |
| ATCCTGTGAAACATCAAACA+GGG | 0.706287 | 5_4:+15820729 | None:intergenic |
| GAGTGATGTCAGGAGGACTG+CGG | 0.788431 | 5_4:-15819262 | Msa0840230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATTTTTACAAAATTCA+AGG | - | chr5_4:15819631-15819650 | Msa0840230:intron | 15.0% |
| !!! | ATTCACAGAATTTTATTTAT+TGG | - | chr5_4:15819951-15819970 | Msa0840230:intron | 15.0% |
| !!! | TTCACAGAATTTTATTTATT+GGG | - | chr5_4:15819952-15819971 | Msa0840230:intron | 15.0% |
| !! | ATATACAATCATGAAAAATG+TGG | + | chr5_4:15819387-15819406 | None:intergenic | 20.0% |
| !!! | TTTTTCATGATTGTATATTG+AGG | - | chr5_4:15819389-15819408 | Msa0840230:intron | 20.0% |
| !!! | TATTTTTATGTTTTAGCGAA+AGG | - | chr5_4:15819416-15819435 | Msa0840230:intron | 20.0% |
| !!! | ATTTTTATGTTTTAGCGAAA+GGG | - | chr5_4:15819417-15819436 | Msa0840230:intron | 20.0% |
| !!! | AATTTTTACAAAATTCAAGG+TGG | - | chr5_4:15819634-15819653 | Msa0840230:intron | 20.0% |
| !!! | ATAACTAACAAAAACCTTTT+GGG | + | chr5_4:15819757-15819776 | None:intergenic | 20.0% |
| !!! | AATAACTAACAAAAACCTTT+TGG | + | chr5_4:15819758-15819777 | None:intergenic | 20.0% |
| !!! | AGGTTTTTGTTAGTTATTTA+TGG | - | chr5_4:15819760-15819779 | Msa0840230:intron | 20.0% |
| !!! | GGTTTTTGTTAGTTATTTAT+GGG | - | chr5_4:15819761-15819780 | Msa0840230:intron | 20.0% |
| !! | AAATATGTCATGTATACTAT+AGG | - | chr5_4:15819818-15819837 | Msa0840230:intron | 20.0% |
| !!! | ATTTTATTTATTGGGTTCAT+AGG | - | chr5_4:15819960-15819979 | Msa0840230:intron | 20.0% |
| !! | AATGGTAGTAATGTATTTAT+AGG | + | chr5_4:15820316-15820335 | None:intergenic | 20.0% |
| !! | ACAAAAAAAAAAAGTAACTC+GGG | + | chr5_4:15820748-15820767 | None:intergenic | 20.0% |
| !! | CACAAAAAAAAAAAGTAACT+CGG | + | chr5_4:15820749-15820768 | None:intergenic | 20.0% |
| !!! | AGTTACTTTTTTTTTTTGTG+TGG | - | chr5_4:15820749-15820768 | Msa0840230:CDS | 20.0% |
| ! | AAACACAACACAAAAGTAAA+GGG | - | chr5_4:15818672-15818691 | Msa0840230:exon | 25.0% |
| ! | AATTAATGAGCAAAATAGCA+CGG | + | chr5_4:15819050-15819069 | None:intergenic | 25.0% |
| ! | TACTATGATCTCTATGAAAA+TGG | - | chr5_4:15819286-15819305 | Msa0840230:CDS | 25.0% |
| ! | TAAACTTAGCCCTAATAATA+GGG | + | chr5_4:15819503-15819522 | None:intergenic | 25.0% |
| ! | ATAAACTTAGCCCTAATAAT+AGG | + | chr5_4:15819504-15819523 | None:intergenic | 25.0% |
| !!! | ACAAGACTTTATTTTACTGA+TGG | - | chr5_4:15819595-15819614 | Msa0840230:intron | 25.0% |
| !!! | ATAGAAATCTGATTTTGATC+AGG | - | chr5_4:15819683-15819702 | Msa0840230:intron | 25.0% |
| !! | GAATTTTCATTGTCAAGATT+TGG | + | chr5_4:15819888-15819907 | None:intergenic | 25.0% |
| ! | GTATAAGCATTAATGAGTAT+AGG | + | chr5_4:15819998-15820017 | None:intergenic | 25.0% |
| !!! | TTTTTTTCGAGTAGACAAAT+AGG | + | chr5_4:15820032-15820051 | None:intergenic | 25.0% |
| ! | TATTTGTCTACTCGAAAAAA+AGG | - | chr5_4:15820031-15820050 | Msa0840230:intron | 25.0% |
| ! | AGGTGATAAACTAATTTGAT+AGG | - | chr5_4:15820080-15820099 | Msa0840230:intron | 25.0% |
| ! | GGTGATAAACTAATTTGATA+GGG | - | chr5_4:15820081-15820100 | Msa0840230:intron | 25.0% |
| ! | AAATGATGTTTCATAGTTGT+AGG | + | chr5_4:15820191-15820210 | None:intergenic | 25.0% |
| ! | TATTTATAGGAATTTGACAG+GGG | + | chr5_4:15820303-15820322 | None:intergenic | 25.0% |
| ! | GTATTTATAGGAATTTGACA+GGG | + | chr5_4:15820304-15820323 | None:intergenic | 25.0% |
| ! | TGTATTTATAGGAATTTGAC+AGG | + | chr5_4:15820305-15820324 | None:intergenic | 25.0% |
| ! | TAATGGCTAAACAAAGTAAA+TGG | + | chr5_4:15820334-15820353 | None:intergenic | 25.0% |
| ! | GTTGAACTAAATTGATGTAA+TGG | + | chr5_4:15820351-15820370 | None:intergenic | 25.0% |
| !! | AAATCTTATGTTTTCAGCAA+AGG | - | chr5_4:15820551-15820570 | Msa0840230:intron | 25.0% |
| ! | AGAGGAAATATAAAAAGGAA+AGG | + | chr5_4:15820722-15820741 | None:intergenic | 25.0% |
| ! | ATAGTATGATTCTGATAGAA+AGG | + | chr5_4:15820850-15820869 | None:intergenic | 25.0% |
| !! | GGTAAGGAAAGTATATTATT+TGG | - | chr5_4:15821054-15821073 | Msa0840230:CDS | 25.0% |
| CAAACACAACACAAAAGTAA+AGG | - | chr5_4:15818671-15818690 | Msa0840230:exon | 30.0% | |
| AAAGTAAAGGGATGATTTCA+TGG | - | chr5_4:15818684-15818703 | Msa0840230:CDS | 30.0% | |
| GATGTTAAAAAGAGAGCTTA+TGG | - | chr5_4:15818760-15818779 | Msa0840230:CDS | 30.0% | |
| ! | GAAACAAAAGCTAGAGTATT+TGG | - | chr5_4:15818850-15818869 | Msa0840230:intron | 30.0% |
| ! | GTTATCAATCTGGCTTATAA+GGG | + | chr5_4:15819028-15819047 | None:intergenic | 30.0% |
| !! | ATGGACTGCATTGATAATTT+TGG | - | chr5_4:15819305-15819324 | Msa0840230:CDS | 30.0% |
| TGGTACCTTCTTCTATTATT+AGG | - | chr5_4:15819325-15819344 | Msa0840230:CDS | 30.0% | |
| GGTACCTTCTTCTATTATTA+GGG | - | chr5_4:15819326-15819345 | Msa0840230:CDS | 30.0% | |
| CTTTCCCTAATAATAGAAGA+AGG | + | chr5_4:15819333-15819352 | None:intergenic | 30.0% | |
| TTGACAATGAAAATTCAACG+TGG | - | chr5_4:15819892-15819911 | Msa0840230:intron | 30.0% | |
| TGACAATGAAAATTCAACGT+GGG | - | chr5_4:15819893-15819912 | Msa0840230:intron | 30.0% | |
| AAAATTCTGTGAATACCATG+TGG | + | chr5_4:15819945-15819964 | None:intergenic | 30.0% | |
| AAAGGTGACATTAACTAGAT+TGG | - | chr5_4:15820049-15820068 | Msa0840230:intron | 30.0% | |
| ! | ATATGCTAGTTTCAAGTCTA+AGG | - | chr5_4:15820584-15820603 | Msa0840230:intron | 30.0% |
| AAAGTGAAGTAATTGAGGAA+TGG | + | chr5_4:15820610-15820629 | None:intergenic | 30.0% | |
| GGACAAGAGGAAATATAAAA+AGG | + | chr5_4:15820727-15820746 | None:intergenic | 30.0% | |
| AATATACTTTCCTTACCTGA+AGG | + | chr5_4:15821051-15821070 | None:intergenic | 30.0% | |
| ACCAAATAGAACAGAATCTG+AGG | - | chr5_4:15818714-15818733 | Msa0840230:CDS | 35.0% | |
| TCCTCAGATTCTGTTCTATT+TGG | + | chr5_4:15818718-15818737 | None:intergenic | 35.0% | |
| GAACAGAATCTGAGGAATTA+TGG | - | chr5_4:15818722-15818741 | Msa0840230:CDS | 35.0% | |
| ! | TCTGAGATGAGATCTTCATT+TGG | - | chr5_4:15818821-15818840 | Msa0840230:intron | 35.0% |
| ! | CAAAAGCTAGAGTATTTGGA+AGG | - | chr5_4:15818854-15818873 | Msa0840230:intron | 35.0% |
| TATTTGGAAGGTTACTGTGA+AGG | - | chr5_4:15818866-15818885 | Msa0840230:intron | 35.0% | |
| ATTTGGAAGGTTACTGTGAA+GGG | - | chr5_4:15818867-15818886 | Msa0840230:intron | 35.0% | |
| ! | GGTTATCAATCTGGCTTATA+AGG | + | chr5_4:15819029-15819048 | None:intergenic | 35.0% |
| AAATAGCACGGTTATCAATC+TGG | + | chr5_4:15819038-15819057 | None:intergenic | 35.0% | |
| !!! | CGATGCTGTTTTTGCATATA+CGG | - | chr5_4:15819100-15819119 | Msa0840230:intron | 35.0% |
| ATCCTGTGAAACATCAAACA+GGG | + | chr5_4:15819180-15819199 | None:intergenic | 35.0% | |
| AATCCTGTGAAACATCAAAC+AGG | + | chr5_4:15819181-15819200 | None:intergenic | 35.0% | |
| GTTTGATGTTTCACAGGATT+CGG | - | chr5_4:15819181-15819200 | Msa0840230:intron | 35.0% | |
| AATTCTCACCTAGAAGAGTA+TGG | + | chr5_4:15819214-15819233 | None:intergenic | 35.0% | |
| !!! | TTATGTTTTAGCGAAAGGGA+AGG | - | chr5_4:15819421-15819440 | Msa0840230:intron | 35.0% |
| ! | ATAATAGGGAGCATGACATA+GGG | + | chr5_4:15819489-15819508 | None:intergenic | 35.0% |
| ! | AATAATAGGGAGCATGACAT+AGG | + | chr5_4:15819490-15819509 | None:intergenic | 35.0% |
| ATGTCATGCTCCCTATTATT+AGG | - | chr5_4:15819490-15819509 | Msa0840230:intron | 35.0% | |
| TGTCATGCTCCCTATTATTA+GGG | - | chr5_4:15819491-15819510 | Msa0840230:intron | 35.0% | |
| !!! | GACTTTATTTTACTGATGGC+TGG | - | chr5_4:15819599-15819618 | Msa0840230:intron | 35.0% |
| ! | ACTAACAAAAACCTTTTGGG+AGG | + | chr5_4:15819754-15819773 | None:intergenic | 35.0% |
| !! | CATTGTCAAGATTTGGTGTA+GGG | + | chr5_4:15819881-15819900 | None:intergenic | 35.0% |
| !! | TCATTGTCAAGATTTGGTGT+AGG | + | chr5_4:15819882-15819901 | None:intergenic | 35.0% |
| TCTTGCATTTAAAGACCACA+TGG | - | chr5_4:15819927-15819946 | Msa0840230:intron | 35.0% | |
| ! | CACAAATAGCAGAAGGATTT+TGG | + | chr5_4:15820139-15820158 | None:intergenic | 35.0% |
| CTATGCCTGTTCTATTCTAA+AGG | - | chr5_4:15820265-15820284 | Msa0840230:intron | 35.0% | |
| CGTATTCGAATGCTTTCTAT+TGG | + | chr5_4:15820387-15820406 | None:intergenic | 35.0% | |
| ACAGCAAAGTGAAGTAATTG+AGG | + | chr5_4:15820615-15820634 | None:intergenic | 35.0% | |
| GATAGAAAGGAAACAATTCG+TGG | + | chr5_4:15820837-15820856 | None:intergenic | 35.0% | |
| TACTATCCTCATGTTCGTTA+TGG | - | chr5_4:15820864-15820883 | Msa0840230:intron | 35.0% | |
| !!! | TGTCGTTGATTTTGTTTGTC+AGG | - | chr5_4:15820968-15820987 | Msa0840230:intron | 35.0% |
| !!! | GTCGTTGATTTTGTTTGTCA+GGG | - | chr5_4:15820969-15820988 | Msa0840230:intron | 35.0% |
| AGTCTTAGAAAGCAGTCTTA+TGG | + | chr5_4:15821232-15821251 | None:intergenic | 35.0% | |
| TCTGAGGAATTATGGAAGCA+TGG | - | chr5_4:15818730-15818749 | Msa0840230:CDS | 40.0% | |
| ! | CTGAGGAATTATGGAAGCAT+GGG | - | chr5_4:15818731-15818750 | Msa0840230:CDS | 40.0% |
| !! | TTGATGATGCATGTGAGTGA+AGG | - | chr5_4:15818934-15818953 | Msa0840230:CDS | 40.0% |
| ! | AGTGAAGGTGTAATGGTAGA+AGG | - | chr5_4:15818949-15818968 | Msa0840230:CDS | 40.0% |
| ! | GTGAAGGTGTAATGGTAGAA+GGG | - | chr5_4:15818950-15818969 | Msa0840230:CDS | 40.0% |
| TATGCAAAAACAGCATCGCA+CGG | + | chr5_4:15819098-15819117 | None:intergenic | 40.0% | |
| TACCCTGTTTGATGTTTCAC+AGG | - | chr5_4:15819175-15819194 | Msa0840230:intron | 40.0% | |
| GACTATGTCCATACTCTTCT+AGG | - | chr5_4:15819203-15819222 | Msa0840230:intron | 40.0% | |
| GGTTGTCTGGATACATTTCA+AGG | - | chr5_4:15819442-15819461 | Msa0840230:intron | 40.0% | |
| !! | CTTTTGGGAGGATTGTAGAT+AGG | + | chr5_4:15819742-15819761 | None:intergenic | 40.0% |
| CTATCTACAATCCTCCCAAA+AGG | - | chr5_4:15819740-15819759 | Msa0840230:intron | 40.0% | |
| TAACTAGATTGGTGTGCTCA+AGG | - | chr5_4:15820060-15820079 | Msa0840230:intron | 40.0% | |
| TTGAGCACACAAATAGCAGA+AGG | + | chr5_4:15820146-15820165 | None:intergenic | 40.0% | |
| ACAACACAAACCCTAATGCT+AGG | + | chr5_4:15820671-15820690 | None:intergenic | 40.0% | |
| AAAAAGTAACTCGGGACAAG+AGG | + | chr5_4:15820740-15820759 | None:intergenic | 40.0% | |
| CAATTGTTGCCTGGAATACA+CGG | + | chr5_4:15821115-15821134 | None:intergenic | 40.0% | |
| AATTTCCTCCAATTGTTGCC+TGG | + | chr5_4:15821124-15821143 | None:intergenic | 40.0% | |
| GCATGATAAAGTTACTGCAG+TGG | - | chr5_4:15821255-15821274 | Msa0840230:CDS | 40.0% | |
| GATAAAGTTACTGCAGTGGT+TGG | - | chr5_4:15821259-15821278 | Msa0840230:CDS | 40.0% | |
| ! | GCATGTGAGTGAAGGTGTAA+TGG | - | chr5_4:15818942-15818961 | Msa0840230:CDS | 45.0% |
| GTTTCACTATCCTATGCCCT+TGG | - | chr5_4:15819146-15819165 | Msa0840230:intron | 45.0% | |
| TTCAAGGCAGTACGTAATGC+AGG | - | chr5_4:15819458-15819477 | Msa0840230:intron | 45.0% | |
| GGCTGCGCATTAATGAGTAT+AGG | + | chr5_4:15820118-15820137 | None:intergenic | 45.0% | |
| !! | GCACGCCTTTAGAATAGAAC+AGG | + | chr5_4:15820273-15820292 | None:intergenic | 45.0% |
| TGTCTGATGTGAGTGATGTC+AGG | - | chr5_4:15820634-15820653 | Msa0840230:intron | 45.0% | |
| CAAAGGCTCCAGCAAAGATA+TGG | + | chr5_4:15820940-15820959 | None:intergenic | 45.0% | |
| ! | TTTGCTGGAGCCTTTGACTT+CGG | - | chr5_4:15820944-15820963 | Msa0840230:intron | 45.0% |
| TCAACGACATCCGAAGTCAA+AGG | + | chr5_4:15820957-15820976 | None:intergenic | 45.0% | |
| TACCGTAGCTGTTGCTATGA+GGG | + | chr5_4:15820997-15821016 | None:intergenic | 45.0% | |
| TTACCGTAGCTGTTGCTATG+AGG | + | chr5_4:15820998-15821017 | None:intergenic | 45.0% | |
| CATAGCAACAGCTACGGTAA+TGG | - | chr5_4:15820998-15821017 | Msa0840230:intron | 45.0% | |
| CGTGTATTCCAGGCAACAAT+TGG | - | chr5_4:15821113-15821132 | Msa0840230:CDS | 45.0% | |
| GTATTCCAGGCAACAATTGG+AGG | - | chr5_4:15821116-15821135 | Msa0840230:CDS | 45.0% | |
| TGACGATACCATGAGCAAGA+TGG | - | chr5_4:15821158-15821177 | Msa0840230:CDS | 45.0% | |
| GACGATACCATGAGCAAGAT+GGG | - | chr5_4:15821159-15821178 | Msa0840230:CDS | 45.0% | |
| AATTGCACCCATCTTGCTCA+TGG | + | chr5_4:15821169-15821188 | None:intergenic | 45.0% | |
| ! | GAGCAAGATGGGTGCAATTT+TGG | - | chr5_4:15821170-15821189 | Msa0840230:CDS | 45.0% |
| !! | ATGGGTGCAATTTTGGCATC+CGG | - | chr5_4:15821177-15821196 | Msa0840230:CDS | 45.0% |
| CATTTCTTCCACCAGCATCA+AGG | + | chr5_4:15821206-15821225 | None:intergenic | 45.0% | |
| ! | AAACAGGGTACCAGCTCCAA+GGG | + | chr5_4:15819165-15819184 | None:intergenic | 50.0% |
| TAGCGAAAGGGAAGGTTGTC+TGG | - | chr5_4:15819429-15819448 | Msa0840230:intron | 50.0% | |
| CTGATGTGAGTGATGTCAGG+AGG | - | chr5_4:15820637-15820656 | Msa0840230:intron | 50.0% | |
| GTTGTACTCTGATCCAGAGC+AGG | - | chr5_4:15820686-15820705 | Msa0840230:intron | 50.0% | |
| ATTCGTGGAGTCTGCAGTGT+AGG | + | chr5_4:15820822-15820841 | None:intergenic | 50.0% | |
| GCTGCTCCATAACGAACATG+AGG | + | chr5_4:15820873-15820892 | None:intergenic | 50.0% | |
| TTATGGAGCAGCTCTTGCTG+TGG | - | chr5_4:15820881-15820900 | Msa0840230:intron | 50.0% | |
| ! | TATGGAGCAGCTCTTGCTGT+GGG | - | chr5_4:15820882-15820901 | Msa0840230:intron | 50.0% |
| TGCTGTGGGTATTTCCTGTG+CGG | - | chr5_4:15820896-15820915 | Msa0840230:intron | 50.0% | |
| CAGTGAGGCCATATCTTTGC+TGG | - | chr5_4:15820929-15820948 | Msa0840230:intron | 50.0% | |
| TGCCCTCATAGCAACAGCTA+CGG | - | chr5_4:15820992-15821011 | Msa0840230:intron | 50.0% | |
| CAGATCAGTGATTCGCGTGT+TGG | - | chr5_4:15821023-15821042 | Msa0840230:intron | 50.0% | |
| ATTCGCGTGTTGGAACCTTC+AGG | - | chr5_4:15821033-15821052 | Msa0840230:intron | 50.0% | |
| CGTGTTGGAACCTTCAGGTA+AGG | - | chr5_4:15821038-15821057 | Msa0840230:intron | 50.0% | |
| TCTGACATGCCGTGTATTCC+AGG | - | chr5_4:15821103-15821122 | Msa0840230:CDS | 50.0% | |
| TCCACCAGCATCAAGGATTC+CGG | + | chr5_4:15821199-15821218 | None:intergenic | 50.0% | |
| CTATCCTATGCCCTTGGAGC+TGG | - | chr5_4:15819152-15819171 | Msa0840230:intron | 55.0% | |
| ! | CAAACAGGGTACCAGCTCCA+AGG | + | chr5_4:15819166-15819185 | None:intergenic | 55.0% |
| GAGTGATGTCAGGAGGACTG+CGG | - | chr5_4:15820644-15820663 | Msa0840230:intron | 55.0% | |
| AGGACTGCGGTCCTAGCATT+AGG | - | chr5_4:15820657-15820676 | Msa0840230:intron | 55.0% | |
| GGACTGCGGTCCTAGCATTA+GGG | - | chr5_4:15820658-15820677 | Msa0840230:intron | 55.0% | |
| ! | AGGACAGAACTAGCCTGCTC+TGG | + | chr5_4:15820702-15820721 | None:intergenic | 55.0% |
| GCTGTGGGTATTTCCTGTGC+GGG | - | chr5_4:15820897-15820916 | Msa0840230:intron | 55.0% | |
| GGTATTTCCTGTGCGGGTAC+AGG | - | chr5_4:15820903-15820922 | Msa0840230:intron | 55.0% | |
| GCATCCGGAATCCTTGATGC+TGG | - | chr5_4:15821192-15821211 | Msa0840230:CDS | 55.0% | |
| TCCGGAATCCTTGATGCTGG+TGG | - | chr5_4:15821195-15821214 | Msa0840230:CDS | 55.0% | |
| ! | GGTACCAGCTCCAAGGGCAT+AGG | + | chr5_4:15819159-15819178 | None:intergenic | 60.0% |
| ACTGAGACCTGTACCCGCAC+AGG | + | chr5_4:15820913-15820932 | None:intergenic | 60.0% | |
| TGCGGGTACAGGTCTCAGTG+AGG | - | chr5_4:15820914-15820933 | Msa0840230:intron | 60.0% | |
| GAAAGACCCGCGCGATAGCG+CGG | - | chr5_4:15820508-15820527 | Msa0840230:intron | 65.0% | |
| AAAGACCCGCGCGATAGCGC+GGG | - | chr5_4:15820509-15820528 | Msa0840230:intron | 65.0% | |
| TCTTGACCCGCGCTATCGCG+CGG | + | chr5_4:15820518-15820537 | None:intergenic | 65.0% | |
| CTTGACCCGCGCTATCGCGC+GGG | + | chr5_4:15820517-15820536 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 15818623 | 15821305 | 15818623 | ID=Msa0840230;Name=Msa0840230 |
| chr5_4 | mRNA | 15818623 | 15821305 | 15818623 | ID=Msa0840230-mRNA-1;Parent=Msa0840230;Name=Msa0840230-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.25|0.4|1|1|1|5|51|281 |
| chr5_4 | exon | 15818623 | 15818803 | 15818623 | ID=Msa0840230-mRNA-1:exon:6802;Parent=Msa0840230-mRNA-1 |
| chr5_4 | exon | 15818874 | 15819097 | 15818874 | ID=Msa0840230-mRNA-1:exon:6801;Parent=Msa0840230-mRNA-1 |
| chr5_4 | exon | 15819212 | 15819360 | 15819212 | ID=Msa0840230-mRNA-1:exon:6800;Parent=Msa0840230-mRNA-1 |
| chr5_4 | exon | 15820704 | 15820793 | 15820704 | ID=Msa0840230-mRNA-1:exon:6799;Parent=Msa0840230-mRNA-1 |
| chr5_4 | exon | 15821053 | 15821305 | 15821053 | ID=Msa0840230-mRNA-1:exon:6798;Parent=Msa0840230-mRNA-1 |
| chr5_4 | CDS | 15821053 | 15821305 | 15821053 | ID=Msa0840230-mRNA-1:cds;Parent=Msa0840230-mRNA-1 |
| chr5_4 | CDS | 15820704 | 15820793 | 15820704 | ID=Msa0840230-mRNA-1:cds;Parent=Msa0840230-mRNA-1 |
| chr5_4 | CDS | 15819212 | 15819360 | 15819212 | ID=Msa0840230-mRNA-1:cds;Parent=Msa0840230-mRNA-1 |
| chr5_4 | CDS | 15818874 | 15819097 | 15818874 | ID=Msa0840230-mRNA-1:cds;Parent=Msa0840230-mRNA-1 |
| chr5_4 | CDS | 15818674 | 15818803 | 15818674 | ID=Msa0840230-mRNA-1:cds;Parent=Msa0840230-mRNA-1 |
| chr5_4 | three_prime_UTR | 15818623 | 15818673 | 15818623 | ID=Msa0840230-mRNA-1:three_prime_utr;Parent=Msa0840230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
