AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844310 MtrunA17_Chr5g0423251 73.239 355 12 3 1 273 1 354 2.11e-176 490
Msa0844310 MtrunA17_Chr5g0423191 62.606 353 49 3 1 271 1 352 2.46e-147 416
Msa0844310 MtrunA17_Chr5g0421041 63.099 355 46 4 1 273 1 352 7.82e-147 415
Msa0844310 MtrunA17_Chr5g0421101 52.874 348 81 3 5 270 5 351 2.66e-120 348
Msa0844310 MtrunA17_Chr5g0421011 51.841 353 87 3 1 271 1 352 1.16e-119 346
Msa0844310 MtrunA17_Chr5g0423201 51.989 352 85 4 5 273 5 355 1.88e-114 333
Msa0844310 MtrunA17_Chr5g0420941 51.445 346 85 3 7 270 5 349 7.85e-114 331
Msa0844310 MtrunA17_Chr5g0420901 48.986 345 93 3 8 270 7 350 2.87e-111 325
Msa0844310 MtrunA17_Chr5g0423221 50.712 351 89 4 1 268 25 374 9.17e-111 324
Msa0844310 MtrunA17_Chr5g0423211 48.725 353 94 4 1 268 1 351 4.24e-109 319
Msa0844310 MtrunA17_Chr5g0421091 48.127 347 96 4 7 270 5 350 2.63e-105 310
Msa0844310 MtrunA17_Chr8g0365241 47.863 351 99 4 3 270 13 362 3.10e-104 307
Msa0844310 MtrunA17_Chr5g0420981 48.864 352 95 5 3 270 8 358 8.85e-104 306
Msa0844310 MtrunA17_Chr5g0420951 46.705 349 101 5 4 268 9 356 2.05e-99 295
Msa0844310 MtrunA17_Chr8g0375671 43.626 353 112 4 7 273 12 363 1.08e-91 275
Msa0844310 MtrunA17_Chr5g0420721 54.331 254 34 2 100 271 1 254 4.57e-86 257
Msa0844310 MtrunA17_Chr2g0314381 40.456 351 125 3 5 271 34 384 2.79e-84 257
Msa0844310 MtrunA17_Chr8g0375601 41.143 350 117 6 10 271 8 356 2.62e-83 254
Msa0844310 MtrunA17_Chr8g0375571 40.456 351 122 4 6 270 4 353 1.55e-82 251
Msa0844310 MtrunA17_Chr2g0314391 38.746 351 130 4 5 271 28 377 6.70e-80 246
Msa0844310 MtrunA17_Chr2g0314401 37.752 347 131 4 5 267 9 354 3.81e-75 233
Msa0844310 MtrunA17_Chr1g0162191 36.975 357 133 6 3 273 7 357 3.12e-69 218
Msa0844310 MtrunA17_Chr8g0375701 34.356 326 130 4 25 267 31 355 1.81e-61 197
Msa0844310 MtrunA17_Chr5g0420891 71.774 124 34 1 8 131 7 129 2.72e-58 183
Msa0844310 MtrunA17_Chr8g0375681 38.628 277 88 2 79 273 15 291 1.97e-56 183
Msa0844310 MtrunA17_Chr2g0314371 40.586 239 88 2 5 189 9 247 9.34e-53 174
Msa0844310 MtrunA17_Chr8g0375661 53.289 152 61 3 7 154 12 157 4.92e-47 154
Msa0844310 MtrunA17_Chr8g0375641 52.903 155 61 4 5 154 10 157 1.55e-46 154
Msa0844310 MtrunA17_Chr7g0239821 29.799 349 161 4 4 269 20 367 3.94e-45 155
Msa0844310 MtrunA17_Chr7g0239101 28.080 349 165 5 4 268 11 357 5.08e-45 155
Msa0844310 MtrunA17_Chr7g0239121 28.205 351 165 5 4 269 7 355 2.49e-44 153
Msa0844310 MtrunA17_Chr3g0087031 29.598 348 155 7 6 267 17 360 1.73e-43 151
Msa0844310 MtrunA17_Chr8g0375591 56.693 127 49 3 7 128 5 130 1.51e-41 139
Msa0844310 MtrunA17_Chr7g0239111 27.714 350 167 5 4 269 11 358 3.66e-41 145
Msa0844310 MtrunA17_Chr2g0296371 28.247 308 134 3 48 268 50 357 2.19e-38 138
Msa0844310 MtrunA17_Chr5g0420731 73.810 84 21 1 1 84 1 83 3.54e-37 127
Msa0844310 MtrunA17_Chr5g0437181 28.228 333 150 6 23 266 23 355 8.12e-37 134
Msa0844310 MtrunA17_Chr3g0113641 27.381 336 155 6 23 269 24 359 1.65e-36 133
Msa0844310 MtrunA17_Chr5g0426891 28.947 342 155 8 12 267 3 342 1.96e-36 132
Msa0844310 MtrunA17_Chr7g0242551 26.857 350 161 8 13 268 15 363 3.60e-33 124
Msa0844310 MtrunA17_Chr7g0232161 34.101 217 111 3 4 189 16 231 7.57e-33 122
Msa0844310 MtrunA17_Chr3g0128001 25.150 334 164 7 16 266 6 336 8.89e-33 122
Msa0844310 MtrunA17_Chr7g0239091 27.492 331 164 5 11 267 123 451 1.55e-32 124
Msa0844310 MtrunA17_Chr5g0420881 39.456 147 37 1 176 270 1 147 7.45e-31 112
Msa0844310 MtrunA17_Chr4g0006371 25.556 360 164 8 13 269 14 372 1.38e-30 117
Msa0844310 MtrunA17_Chr8g0370711 27.246 345 158 8 12 267 14 354 1.32e-28 111
Msa0844310 MtrunA17_Chr3g0126741 27.988 343 159 10 10 266 20 360 3.06e-28 110
Msa0844310 MtrunA17_Chr3g0145171 26.797 306 137 5 47 267 51 354 3.46e-28 110
Msa0844310 MtrunA17_Chr4g0064781 25.507 345 164 7 8 267 12 348 8.81e-27 107
Msa0844310 MtrunA17_Chr8g0345831 22.674 344 181 7 7 267 2 343 1.87e-26 105
Msa0844310 MtrunA17_Chr5g0398291 26.667 315 135 8 21 239 15 329 1.28e-23 98.2
Msa0844310 MtrunA17_Chr8g0370721 26.667 345 160 11 12 267 14 354 6.65e-23 96.3
Msa0844310 MtrunA17_Chr7g0266651 24.107 336 164 9 21 268 31 363 1.10e-22 95.9
Msa0844310 MtrunA17_Chr1g0187821 24.242 330 164 8 24 267 41 370 1.16e-22 95.9
Msa0844310 MtrunA17_Chr2g0314361 51.899 79 38 0 189 267 1 79 2.61e-22 88.2
Msa0844310 MtrunA17_Chr3g0109041 23.615 343 167 11 19 269 15 354 2.65e-22 94.7
Msa0844310 MtrunA17_Chr3g0145181 26.364 330 142 13 12 247 12 334 7.79e-22 93.2
Msa0844310 MtrunA17_Chr1g0161041 24.169 331 163 10 21 266 67 394 2.72e-21 92.4
Msa0844310 MtrunA17_Chr8g0354261 22.741 343 173 9 21 273 40 380 5.43e-21 91.3
Msa0844310 MtrunA17_Chr3g0093741 21.856 334 170 6 21 267 25 354 3.87e-20 88.6
Msa0844310 MtrunA17_Chr1g0187831 23.054 334 168 8 22 266 40 373 5.64e-20 88.6
Msa0844310 MtrunA17_Chr3g0125201 25.283 265 117 5 48 231 3 267 8.27e-20 87.0
Msa0844310 MtrunA17_Chr8g0354241 23.077 338 168 10 21 268 40 375 1.10e-19 87.8
Msa0844310 MtrunA17_Chr3g0114861 25.749 334 151 10 10 254 3 328 2.63e-19 85.9
Msa0844310 MtrunA17_Chr7g0265351 23.279 305 147 5 46 267 37 337 4.24e-19 85.5
Msa0844310 MtrunA17_Chr1g0161111 23.565 331 165 8 21 266 103 430 5.98e-19 85.9
Msa0844310 MtrunA17_Chr3g0145201 25.862 290 123 9 47 247 683 969 8.53e-19 86.3
Msa0844310 MtrunA17_Chr8g0336761 23.214 336 163 9 21 267 35 364 3.00e-18 83.6
Msa0844310 MtrunA17_Chr8g0348081 24.026 308 143 10 48 267 60 364 5.59e-18 82.8
Msa0844310 MtrunA17_Chr8g0336861 23.810 336 163 12 21 267 35 366 2.61e-17 80.9
Msa0844310 MtrunA17_Chr1g0187811 21.829 339 172 8 22 267 155 493 4.03e-17 80.9
Msa0844310 MtrunA17_Chr1g0162361 21.317 319 155 4 24 248 3 319 5.16e-17 79.7
Msa0844310 MtrunA17_Chr2g0332191 21.519 316 153 7 21 247 24 333 8.10e-17 79.3
Msa0844310 MtrunA17_Chr8g0336851 22.289 332 171 8 21 267 35 364 1.76e-16 78.2
Msa0844310 MtrunA17_Chr8g0336781 22.985 335 166 10 21 267 70 400 5.36e-16 77.0
Msa0844310 MtrunA17_Chr2g0313111 24.000 325 154 12 27 267 10 325 1.65e-15 75.1
Msa0844310 MtrunA17_Chr4g0066121 21.302 338 170 10 21 269 35 365 4.77e-15 74.3
Msa0844310 MtrunA17_Chr1g0184241 21.581 329 174 8 21 267 41 367 5.80e-15 73.9
Msa0844310 MtrunA17_Chr7g0225881 21.176 340 179 9 16 269 36 372 1.77e-14 72.4
Msa0844310 MtrunA17_Chr8g0336751 22.078 308 148 9 48 267 94 397 2.07e-14 72.4
Msa0844310 MtrunA17_Chr4g0066991 22.436 312 173 9 19 262 38 348 8.61e-14 70.5
Msa0844310 MtrunA17_Chr2g0311741 21.317 319 162 9 33 267 14 327 1.02e-13 70.1
Msa0844310 MtrunA17_Chr2g0311631 30.348 201 108 6 24 195 32 229 1.90e-13 69.7
Msa0844310 MtrunA17_Chr8g0336831 30.093 216 111 11 21 202 35 244 1.38e-12 65.9
Msa0844310 MtrunA17_Chr8g0364471 20.544 331 176 7 19 262 38 368 3.13e-12 65.9
Msa0844310 MtrunA17_Chr2g0311711 21.387 346 177 11 12 267 30 370 7.13e-12 65.1
Msa0844310 MtrunA17_Chr1g0161081 37.500 96 52 2 21 111 44 136 5.66e-11 62.4
Msa0844310 MtrunA17_Chr5g0407781 41.026 78 41 2 46 123 3 75 8.52e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844310 AT1G17020.1 38.395 349 128 5 6 267 10 358 1.00e-79 245
Msa0844310 AT1G17010.1 37.143 350 133 5 6 268 10 359 5.06e-76 236
Msa0844310 AT1G78550.1 35.447 347 139 4 6 267 10 356 6.27e-75 233
Msa0844310 AT4G25300.1 36.207 348 136 5 6 267 9 356 1.61e-74 231
Msa0844310 AT4G25310.1 37.356 348 129 6 6 267 9 353 8.26e-71 222
Msa0844310 AT4G25310.2 38.125 320 137 6 6 267 9 325 1.24e-64 205
Msa0844310 AT1G78550.2 33.212 274 101 2 76 267 5 278 1.23e-52 173
Msa0844310 AT2G38240.1 27.536 345 161 8 12 269 11 353 2.65e-41 145
Msa0844310 AT3G21420.1 28.490 351 156 7 10 267 14 362 2.21e-39 141
Msa0844310 AT3G55970.1 27.221 349 157 8 13 266 14 360 9.97e-34 126
Msa0844310 AT4G25300.2 33.684 190 73 2 131 267 73 262 2.90e-32 119
Msa0844310 AT5G05600.1 25.588 340 163 7 13 263 27 365 3.72e-32 122
Msa0844310 AT3G11180.1 27.059 340 152 8 13 260 56 391 3.56e-31 120
Msa0844310 AT3G11180.2 26.496 351 161 9 13 270 56 402 4.35e-30 117
Msa0844310 AT5G20400.1 26.801 347 157 9 12 267 8 348 2.01e-29 114
Msa0844310 AT5G20550.1 26.627 338 154 7 12 259 8 341 8.11e-29 112
Msa0844310 AT1G49390.1 25.072 347 163 8 12 267 8 348 1.03e-28 112
Msa0844310 AT5G24530.1 25.309 324 155 7 25 263 15 336 1.89e-28 111
Msa0844310 AT3G13610.1 24.260 338 159 8 19 267 32 361 2.72e-25 103
Msa0844310 AT4G22880.1 27.190 331 139 10 8 239 2 329 6.87e-25 102
Msa0844310 AT4G22880.2 27.190 331 139 10 8 239 2 329 6.87e-25 102
Msa0844310 AT4G22880.3 27.190 331 139 10 8 239 2 329 6.87e-25 102
Msa0844310 AT3G55970.2 32.735 223 104 8 13 193 14 232 1.63e-24 100
Msa0844310 AT1G55290.1 24.702 336 161 8 19 267 31 361 2.32e-24 100
Msa0844310 AT5G54000.2 25.000 348 163 9 12 267 8 349 1.74e-23 98.2
Msa0844310 AT5G05600.2 27.962 211 114 6 13 186 27 236 3.50e-22 93.6
Msa0844310 AT4G10490.1 22.121 330 172 7 22 266 15 344 1.46e-20 90.1
Msa0844310 AT1G06645.1 24.096 332 159 10 21 262 46 374 1.92e-19 87.4
Msa0844310 AT1G80340.1 23.053 321 150 7 16 247 18 330 9.01e-19 85.1
Msa0844310 AT1G06650.2 22.581 341 156 11 21 262 33 364 1.06e-18 85.1
Msa0844310 AT3G12900.1 23.263 331 169 6 21 268 29 357 1.55e-18 84.7
Msa0844310 AT3G19010.3 25.413 303 153 7 40 273 18 316 4.40e-18 82.8
Msa0844310 AT1G06640.1 22.849 337 160 11 21 262 33 364 2.13e-17 81.3
Msa0844310 AT5G43440.1 23.964 338 169 9 15 267 31 365 2.45e-17 81.3
Msa0844310 AT1G03410.2 24.620 329 151 11 21 256 27 351 3.28e-17 80.9
Msa0844310 AT5G43450.1 24.776 335 157 11 15 262 31 357 3.67e-17 80.5
Msa0844310 AT1G03410.1 24.620 329 151 11 21 256 64 388 4.02e-17 80.9
Msa0844310 AT5G59530.1 25.075 335 160 10 22 267 32 364 6.10e-17 80.1
Msa0844310 AT1G06620.1 23.442 337 163 10 21 267 34 365 7.32e-16 77.0
Msa0844310 AT1G12010.1 23.311 296 138 6 47 259 6 295 1.24e-15 75.9
Msa0844310 AT5G07480.1 26.577 222 117 7 2 189 10 219 2.90e-15 75.1
Msa0844310 AT2G19590.1 21.575 292 145 5 47 260 10 295 5.12e-15 73.9
Msa0844310 AT1G06650.1 26.214 206 107 7 21 186 33 233 6.19e-15 73.9
Msa0844310 AT2G30840.1 23.353 334 160 11 21 262 28 357 3.14e-14 72.4
Msa0844310 AT1G06640.2 27.751 209 110 8 21 192 33 237 4.50e-14 71.6
Msa0844310 AT1G06640.3 27.358 212 107 9 21 192 33 237 5.71e-14 70.9
Msa0844310 AT2G30840.3 24.390 328 158 13 21 262 28 351 6.70e-14 71.2
Msa0844310 AT3G61400.1 21.829 339 168 11 21 264 32 368 7.28e-13 68.2
Msa0844310 AT5G43450.2 28.440 218 113 10 15 199 31 238 4.18e-12 65.5
Msa0844310 AT1G06620.2 27.962 211 109 9 21 195 34 237 6.65e-12 64.7
Msa0844310 AT1G77330.1 21.017 295 150 5 48 259 3 297 7.56e-12 64.7
Msa0844310 AT5G43440.2 26.852 216 122 8 15 199 31 241 8.28e-12 64.7
Msa0844310 AT5G59540.2 27.488 211 111 9 22 195 33 238 2.50e-11 63.2
Msa0844310 AT3G61400.2 25.481 208 114 8 21 189 32 237 4.14e-11 62.8
Msa0844310 AT2G30840.2 26.108 203 108 8 21 185 28 226 6.68e-11 62.0

Find 60 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACAGTGCAGCCCTTTC+AGG 0.135168 5_4:-22684707 None:intergenic
CTGAAAATAGTTAGCATATT+TGG 0.157880 5_4:+22684879 Msa0844310:three_prime_UTR
TGGAAGAGAAGAAGAAATTT+TGG 0.211908 5_4:+22683430 Msa0844310:CDS
ATTTATATTCTCAGACTAAA+TGG 0.226952 5_4:+22684954 Msa0844310:three_prime_UTR
CAAACCCCTCAATATCTTCT+TGG 0.244513 5_4:-22683458 None:intergenic
GTTGTATTTGATACATTAAT+AGG 0.272792 5_4:-22683146 None:intergenic
TTGAGTTATATCATCAATTA+AGG 0.272941 5_4:-22684039 None:intergenic
CAAGTTTGGAAACTCATTAT+TGG 0.284700 5_4:+22683046 Msa0844310:CDS
CCTCAAATGAGCACCGTTAT+AGG 0.295626 5_4:+22684662 Msa0844310:CDS
TCTGGAATTTCTTCTATGTT+TGG 0.309818 5_4:-22683098 None:intergenic
ACATTAATAGGGTCTTGATT+TGG 0.339530 5_4:-22683134 None:intergenic
TTGGCTGCTTTGCAAGCTCT+TGG 0.368413 5_4:-22683079 None:intergenic
ATTAAGGCTAGCAGTTCATT+TGG 0.380523 5_4:-22684023 None:intergenic
CAAGAAGATATTGAGGGGTT+TGG 0.387884 5_4:+22683459 Msa0844310:CDS
TTTGGATGAAGATATTGTTC+TGG 0.389738 5_4:-22683116 None:intergenic
CGGAGTCAATCCTTTATTGA+TGG 0.402675 5_4:+22683365 Msa0844310:CDS
GGAAGTGATAAAAGTATCAT+AGG 0.403496 5_4:+22684825 Msa0844310:exon
TTGTATTTGATACATTAATA+GGG 0.416497 5_4:-22683145 None:intergenic
AATGACCGGGACTTGTTGTA+AGG 0.431293 5_4:-22683171 None:intergenic
CTATCCTCCTTGTCCCCAAC+CGG 0.445870 5_4:+22684079 Msa0844310:CDS
TTGATGGAAAATGTGAAGAT+AGG 0.446800 5_4:+22683381 Msa0844310:CDS
TCTCTTCCAATGGAAGACTT+AGG 0.450309 5_4:-22683416 None:intergenic
AGACCATGCATGTAAAGAAT+GGG 0.451504 5_4:+22683241 Msa0844310:CDS
TGAACAGTGCAGCCCTTTCA+GGG 0.459470 5_4:-22684706 None:intergenic
CCTATAACGGTGCTCATTTG+AGG 0.460952 5_4:-22684662 None:intergenic
CTTCAGATAACAATTTACTT+AGG 0.468457 5_4:-22683196 None:intergenic
AATTTCTTCTTCTCTTCCAA+TGG 0.476254 5_4:-22683426 None:intergenic
TAGACCATGCATGTAAAGAA+TGG 0.481543 5_4:+22683240 Msa0844310:CDS
AGAGTTCCTAAGTCTTCCAT+TGG 0.484540 5_4:+22683410 Msa0844310:CDS
CTTTCAGGGGTAACAAGTCT+TGG 0.491424 5_4:-22684692 None:intergenic
GACATGATTTCCCCTGTAGC+TGG 0.497390 5_4:-22684772 None:intergenic
GCAAAACCAAGAAGATATTG+AGG 0.512387 5_4:+22683452 Msa0844310:CDS
TCTTGGTGTTGGACCTATAA+CGG 0.512511 5_4:-22684675 None:intergenic
GTTAGCATATTTGGTAGCTA+AGG 0.512866 5_4:+22684888 Msa0844310:three_prime_UTR
ATAATGCTGAATTATAAAGA+TGG 0.515644 5_4:+22684923 Msa0844310:three_prime_UTR
CAAAACCAAGAAGATATTGA+GGG 0.525282 5_4:+22683453 Msa0844310:CDS
AAAAGTATCATAGGACTATG+TGG 0.525959 5_4:+22684834 Msa0844310:three_prime_UTR
TAATGCTGAATTATAAAGAT+GGG 0.528146 5_4:+22684924 Msa0844310:three_prime_UTR
GGGGTAACAAGTCTTGGTGT+TGG 0.530064 5_4:-22684686 None:intergenic
CAAGACTTGTTACCCCTGAA+AGG 0.531713 5_4:+22684693 Msa0844310:CDS
GATGCTTCGATAAATTCCAT+TGG 0.536434 5_4:-22684579 None:intergenic
AATTTACTTAGGTCAATGAC+CGG 0.542644 5_4:-22683185 None:intergenic
AACTCCCTTACAACAAGTCC+CGG 0.544566 5_4:+22683166 Msa0844310:CDS
TTTGCAAGCTCTTGGACAGA+AGG 0.548419 5_4:-22683071 None:intergenic
AAGACTTGTTACCCCTGAAA+GGG 0.548918 5_4:+22684694 Msa0844310:CDS
TACTTTGTAGTAATCTTCAA+CGG 0.551490 5_4:-22684738 None:intergenic
CGGTGCTCATTTGAGGTCTG+TGG 0.563208 5_4:-22684655 None:intergenic
ATATTATCAAGCTAAGAAAG+AGG 0.573842 5_4:+22682997 Msa0844310:five_prime_UTR
TGATTACAGTTGATTAATCA+CGG 0.584047 5_4:+22683345 Msa0844310:intron
AGGTCTGTGGAAAGCTACAA+TGG 0.585010 5_4:-22684642 None:intergenic
AAAGTATCATAGGACTATGT+GGG 0.591071 5_4:+22684835 Msa0844310:three_prime_UTR
GACCATGCATGTAAAGAATG+GGG 0.611707 5_4:+22683242 Msa0844310:CDS
CAATTAACTCAAAGAAAGAG+AGG 0.617824 5_4:+22684615 Msa0844310:CDS
ACCATGCATGTAAAGAATGG+GGG 0.621988 5_4:+22683243 Msa0844310:CDS
GAACAGTGCAGCCCTTTCAG+GGG 0.639437 5_4:-22684705 None:intergenic
ATGACCGGGACTTGTTGTAA+GGG 0.642501 5_4:-22683170 None:intergenic
ATGATATAACTCAATCAATG+AGG 0.649828 5_4:+22684048 Msa0844310:CDS
GTTGTGCAGATACTGACCAA+TGG 0.680891 5_4:+22684563 Msa0844310:intron
ATTTACTTAGGTCAATGACC+GGG 0.683898 5_4:-22683184 None:intergenic
AAAACCAAGAAGATATTGAG+GGG 0.687021 5_4:+22683454 Msa0844310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTAAATTATAATAA+AGG - chr5_4:22683296-22683315 None:intergenic 0.0%
!! ATAAAATTAAATTATAATAA+AGG - chr5_4:22683296-22683315 None:intergenic 0.0%
!! AAATTAAATTATAATAAAGG+AGG - chr5_4:22683293-22683312 None:intergenic 10.0%
!! AAATTAAATTATAATAAAGG+AGG - chr5_4:22683293-22683312 None:intergenic 10.0%
!! TTGTATTTGATACATTAATA+GGG - chr5_4:22683148-22683167 None:intergenic 15.0%
!!! ATTTTTCAATTCTAAACAAT+AGG - chr5_4:22683955-22683974 None:intergenic 15.0%
!!! CATTTTATAGATTCAAATTT+AGG - chr5_4:22684428-22684447 None:intergenic 15.0%
!! TTGTATTTGATACATTAATA+GGG - chr5_4:22683148-22683167 None:intergenic 15.0%
!!! ATTTTTCAATTCTAAACAAT+AGG - chr5_4:22683955-22683974 None:intergenic 15.0%
!!! CATTTTATAGATTCAAATTT+AGG - chr5_4:22684428-22684447 None:intergenic 15.0%
!! GTTGTATTTGATACATTAAT+AGG - chr5_4:22683149-22683168 None:intergenic 20.0%
!! TTGAGTTATATCATCAATTA+AGG - chr5_4:22684042-22684061 None:intergenic 20.0%
!! TTAAAGGGTAAAATAATAAG+AGG - chr5_4:22684292-22684311 None:intergenic 20.0%
!! TGAGAATTCAAAAAGATAAT+AGG + chr5_4:22684804-22684823 Msa0844310:CDS 20.0%
!! ATAATGCTGAATTATAAAGA+TGG + chr5_4:22684923-22684942 Msa0844310:three_prime_UTR 20.0%
!! TAATGCTGAATTATAAAGAT+GGG + chr5_4:22684924-22684943 Msa0844310:three_prime_UTR 20.0%
!! GTTGTATTTGATACATTAAT+AGG - chr5_4:22683149-22683168 None:intergenic 20.0%
!! TTGAGTTATATCATCAATTA+AGG - chr5_4:22684042-22684061 None:intergenic 20.0%
!! TTAAAGGGTAAAATAATAAG+AGG - chr5_4:22684292-22684311 None:intergenic 20.0%
!! TGAGAATTCAAAAAGATAAT+AGG + chr5_4:22684804-22684823 Msa0844310:CDS 20.0%
!! ATAATGCTGAATTATAAAGA+TGG + chr5_4:22684923-22684942 Msa0844310:three_prime_UTR 20.0%
!! TAATGCTGAATTATAAAGAT+GGG + chr5_4:22684924-22684943 Msa0844310:three_prime_UTR 20.0%
! ATATTATCAAGCTAAGAAAG+AGG + chr5_4:22682997-22683016 Msa0844310:five_prime_UTR 25.0%
!! TGAAGAAAAATGTTCAAGTT+TGG + chr5_4:22683032-22683051 Msa0844310:exon 25.0%
! CTTCAGATAACAATTTACTT+AGG - chr5_4:22683199-22683218 None:intergenic 25.0%
! TGATTACAGTTGATTAATCA+CGG + chr5_4:22683345-22683364 Msa0844310:intron 25.0%
!! TTCACATTTTCCATCAATAA+AGG - chr5_4:22683378-22683397 None:intergenic 25.0%
! TGAGAATCAAAAGTTAGAAT+GGG + chr5_4:22683500-22683519 Msa0844310:intron 25.0%
! AACAAGATATAAAACCTGAA+TGG - chr5_4:22683597-22683616 None:intergenic 25.0%
! ATGATATAACTCAATCAATG+AGG + chr5_4:22684048-22684067 Msa0844310:CDS 25.0%
! AAACTTTCATGCATAACATT+TGG - chr5_4:22684344-22684363 None:intergenic 25.0%
! CTTACCAATTTAATCAGTAA+TGG + chr5_4:22684541-22684560 Msa0844310:intron 25.0%
!! ACAACCATTACTGATTAAAT+TGG - chr5_4:22684548-22684567 None:intergenic 25.0%
! TACTTTGTAGTAATCTTCAA+CGG - chr5_4:22684741-22684760 None:intergenic 25.0%
! CTGAAAATAGTTAGCATATT+TGG + chr5_4:22684879-22684898 Msa0844310:three_prime_UTR 25.0%
! ATATTATCAAGCTAAGAAAG+AGG + chr5_4:22682997-22683016 Msa0844310:five_prime_UTR 25.0%
!! TGAAGAAAAATGTTCAAGTT+TGG + chr5_4:22683032-22683051 Msa0844310:exon 25.0%
! CTTCAGATAACAATTTACTT+AGG - chr5_4:22683199-22683218 None:intergenic 25.0%
! TGATTACAGTTGATTAATCA+CGG + chr5_4:22683345-22683364 Msa0844310:intron 25.0%
!! TTCACATTTTCCATCAATAA+AGG - chr5_4:22683378-22683397 None:intergenic 25.0%
! TGAGAATCAAAAGTTAGAAT+GGG + chr5_4:22683500-22683519 Msa0844310:intron 25.0%
! AACAAGATATAAAACCTGAA+TGG - chr5_4:22683597-22683616 None:intergenic 25.0%
! ATGATATAACTCAATCAATG+AGG + chr5_4:22684048-22684067 Msa0844310:CDS 25.0%
! AAACTTTCATGCATAACATT+TGG - chr5_4:22684344-22684363 None:intergenic 25.0%
! CTTACCAATTTAATCAGTAA+TGG + chr5_4:22684541-22684560 Msa0844310:intron 25.0%
!! ACAACCATTACTGATTAAAT+TGG - chr5_4:22684548-22684567 None:intergenic 25.0%
! TACTTTGTAGTAATCTTCAA+CGG - chr5_4:22684741-22684760 None:intergenic 25.0%
! CTGAAAATAGTTAGCATATT+TGG + chr5_4:22684879-22684898 Msa0844310:three_prime_UTR 25.0%
CAAGTTTGGAAACTCATTAT+TGG + chr5_4:22683046-22683065 Msa0844310:CDS 30.0%
! TCTGGAATTTCTTCTATGTT+TGG - chr5_4:22683101-22683120 None:intergenic 30.0%
TTTGGATGAAGATATTGTTC+TGG - chr5_4:22683119-22683138 None:intergenic 30.0%
ACATTAATAGGGTCTTGATT+TGG - chr5_4:22683137-22683156 None:intergenic 30.0%
AATTTACTTAGGTCAATGAC+CGG - chr5_4:22683188-22683207 None:intergenic 30.0%
TTGATGGAAAATGTGAAGAT+AGG + chr5_4:22683381-22683400 Msa0844310:CDS 30.0%
AATTTCTTCTTCTCTTCCAA+TGG - chr5_4:22683429-22683448 None:intergenic 30.0%
! TGGAAGAGAAGAAGAAATTT+TGG + chr5_4:22683430-22683449 Msa0844310:CDS 30.0%
CAAAACCAAGAAGATATTGA+GGG + chr5_4:22683453-22683472 Msa0844310:CDS 30.0%
AAAACCAAGAAGATATTGAG+GGG + chr5_4:22683454-22683473 Msa0844310:CDS 30.0%
CTGAGAATCAAAAGTTAGAA+TGG + chr5_4:22683499-22683518 Msa0844310:intron 30.0%
AGGAATATTTGGAAATAAGC+GGG - chr5_4:22683571-22683590 None:intergenic 30.0%
GAGGAATATTTGGAAATAAG+CGG - chr5_4:22683572-22683591 None:intergenic 30.0%
ATATAAAACCTGAATGGTTG+AGG - chr5_4:22683591-22683610 None:intergenic 30.0%
ATCGACAATTAACAACATTG+TGG - chr5_4:22683643-22683662 None:intergenic 30.0%
GAATGCAATAGTACAACTAT+AGG + chr5_4:22683793-22683812 Msa0844310:intron 30.0%
TAGGCACAGTTTAACAATAT+TGG + chr5_4:22683812-22683831 Msa0844310:intron 30.0%
TGTTGTAGTTTAGAGGAAAA+CGG - chr5_4:22683846-22683865 None:intergenic 30.0%
! AATGCTTTTGTCATAAACGT+CGG + chr5_4:22684227-22684246 Msa0844310:intron 30.0%
CACTCATAAGAACACTTAAA+GGG - chr5_4:22684307-22684326 None:intergenic 30.0%
ACACTCATAAGAACACTTAA+AGG - chr5_4:22684308-22684327 None:intergenic 30.0%
! TTTCAAGTACAAAGAGTTTG+AGG - chr5_4:22684481-22684500 None:intergenic 30.0%
CCGTGATACTATTGTAATTT+CGG - chr5_4:22684508-22684527 None:intergenic 30.0%
CCGAAATTACAATAGTATCA+CGG + chr5_4:22684505-22684524 Msa0844310:intron 30.0%
CAATTAACTCAAAGAAAGAG+AGG + chr5_4:22684615-22684634 Msa0844310:CDS 30.0%
!! GGAAGTGATAAAAGTATCAT+AGG + chr5_4:22684825-22684844 Msa0844310:exon 30.0%
!! AAAAGTATCATAGGACTATG+TGG + chr5_4:22684834-22684853 Msa0844310:three_prime_UTR 30.0%
! AAAGTATCATAGGACTATGT+GGG + chr5_4:22684835-22684854 Msa0844310:three_prime_UTR 30.0%
CAAGTTTGGAAACTCATTAT+TGG + chr5_4:22683046-22683065 Msa0844310:CDS 30.0%
! TCTGGAATTTCTTCTATGTT+TGG - chr5_4:22683101-22683120 None:intergenic 30.0%
TTTGGATGAAGATATTGTTC+TGG - chr5_4:22683119-22683138 None:intergenic 30.0%
ACATTAATAGGGTCTTGATT+TGG - chr5_4:22683137-22683156 None:intergenic 30.0%
AATTTACTTAGGTCAATGAC+CGG - chr5_4:22683188-22683207 None:intergenic 30.0%
TTGATGGAAAATGTGAAGAT+AGG + chr5_4:22683381-22683400 Msa0844310:CDS 30.0%
AATTTCTTCTTCTCTTCCAA+TGG - chr5_4:22683429-22683448 None:intergenic 30.0%
! TGGAAGAGAAGAAGAAATTT+TGG + chr5_4:22683430-22683449 Msa0844310:CDS 30.0%
CAAAACCAAGAAGATATTGA+GGG + chr5_4:22683453-22683472 Msa0844310:CDS 30.0%
AAAACCAAGAAGATATTGAG+GGG + chr5_4:22683454-22683473 Msa0844310:CDS 30.0%
CTGAGAATCAAAAGTTAGAA+TGG + chr5_4:22683499-22683518 Msa0844310:intron 30.0%
AGGAATATTTGGAAATAAGC+GGG - chr5_4:22683571-22683590 None:intergenic 30.0%
GAGGAATATTTGGAAATAAG+CGG - chr5_4:22683572-22683591 None:intergenic 30.0%
ATATAAAACCTGAATGGTTG+AGG - chr5_4:22683591-22683610 None:intergenic 30.0%
ATCGACAATTAACAACATTG+TGG - chr5_4:22683643-22683662 None:intergenic 30.0%
GAATGCAATAGTACAACTAT+AGG + chr5_4:22683793-22683812 Msa0844310:intron 30.0%
TAGGCACAGTTTAACAATAT+TGG + chr5_4:22683812-22683831 Msa0844310:intron 30.0%
TGTTGTAGTTTAGAGGAAAA+CGG - chr5_4:22683846-22683865 None:intergenic 30.0%
! AATGCTTTTGTCATAAACGT+CGG + chr5_4:22684227-22684246 Msa0844310:intron 30.0%
CACTCATAAGAACACTTAAA+GGG - chr5_4:22684307-22684326 None:intergenic 30.0%
ACACTCATAAGAACACTTAA+AGG - chr5_4:22684308-22684327 None:intergenic 30.0%
! TTTCAAGTACAAAGAGTTTG+AGG - chr5_4:22684481-22684500 None:intergenic 30.0%
CCGTGATACTATTGTAATTT+CGG - chr5_4:22684508-22684527 None:intergenic 30.0%
CCGAAATTACAATAGTATCA+CGG + chr5_4:22684505-22684524 Msa0844310:intron 30.0%
CAATTAACTCAAAGAAAGAG+AGG + chr5_4:22684615-22684634 Msa0844310:CDS 30.0%
!! GGAAGTGATAAAAGTATCAT+AGG + chr5_4:22684825-22684844 Msa0844310:exon 30.0%
!! AAAAGTATCATAGGACTATG+TGG + chr5_4:22684834-22684853 Msa0844310:three_prime_UTR 30.0%
! AAAGTATCATAGGACTATGT+GGG + chr5_4:22684835-22684854 Msa0844310:three_prime_UTR 30.0%
ATTTACTTAGGTCAATGACC+GGG - chr5_4:22683187-22683206 None:intergenic 35.0%
TAGACCATGCATGTAAAGAA+TGG + chr5_4:22683240-22683259 Msa0844310:CDS 35.0%
AGACCATGCATGTAAAGAAT+GGG + chr5_4:22683241-22683260 Msa0844310:CDS 35.0%
GCAAAACCAAGAAGATATTG+AGG + chr5_4:22683452-22683471 Msa0844310:CDS 35.0%
GGAATATTTGGAAATAAGCG+GGG - chr5_4:22683570-22683589 None:intergenic 35.0%
CTGAATGGTTGAGGAATATT+TGG - chr5_4:22683582-22683601 None:intergenic 35.0%
CAAATATTCCTCAACCATTC+AGG + chr5_4:22683580-22683599 Msa0844310:intron 35.0%
! ATTGCTGTTGTTCTGTGATA+CGG - chr5_4:22683752-22683771 None:intergenic 35.0%
! CGATCTTTGTTGTAGTTTAG+AGG - chr5_4:22683853-22683872 None:intergenic 35.0%
TCTGCAACATGAAACAAAGT+TGG - chr5_4:22683919-22683938 None:intergenic 35.0%
ATTAAGGCTAGCAGTTCATT+TGG - chr5_4:22684026-22684045 None:intergenic 35.0%
! TTGAGTCCAATGACATTTTC+CGG - chr5_4:22684101-22684120 None:intergenic 35.0%
! ACTGTCCATCTTTTCTGATT+TGG - chr5_4:22684184-22684203 None:intergenic 35.0%
AAATCAGAAAAGATGGACAG+TGG + chr5_4:22684183-22684202 Msa0844310:intron 35.0%
! GACGTTTATGACAAAAGCAT+TGG - chr5_4:22684228-22684247 None:intergenic 35.0%
GATGCTTCGATAAATTCCAT+TGG - chr5_4:22684582-22684601 None:intergenic 35.0%
! GTTAGCATATTTGGTAGCTA+AGG + chr5_4:22684888-22684907 Msa0844310:three_prime_UTR 35.0%
ATTTACTTAGGTCAATGACC+GGG - chr5_4:22683187-22683206 None:intergenic 35.0%
TAGACCATGCATGTAAAGAA+TGG + chr5_4:22683240-22683259 Msa0844310:CDS 35.0%
AGACCATGCATGTAAAGAAT+GGG + chr5_4:22683241-22683260 Msa0844310:CDS 35.0%
GCAAAACCAAGAAGATATTG+AGG + chr5_4:22683452-22683471 Msa0844310:CDS 35.0%
GGAATATTTGGAAATAAGCG+GGG - chr5_4:22683570-22683589 None:intergenic 35.0%
CTGAATGGTTGAGGAATATT+TGG - chr5_4:22683582-22683601 None:intergenic 35.0%
CAAATATTCCTCAACCATTC+AGG + chr5_4:22683580-22683599 Msa0844310:intron 35.0%
! ATTGCTGTTGTTCTGTGATA+CGG - chr5_4:22683752-22683771 None:intergenic 35.0%
! CGATCTTTGTTGTAGTTTAG+AGG - chr5_4:22683853-22683872 None:intergenic 35.0%
TCTGCAACATGAAACAAAGT+TGG - chr5_4:22683919-22683938 None:intergenic 35.0%
ATTAAGGCTAGCAGTTCATT+TGG - chr5_4:22684026-22684045 None:intergenic 35.0%
! TTGAGTCCAATGACATTTTC+CGG - chr5_4:22684101-22684120 None:intergenic 35.0%
! ACTGTCCATCTTTTCTGATT+TGG - chr5_4:22684184-22684203 None:intergenic 35.0%
AAATCAGAAAAGATGGACAG+TGG + chr5_4:22684183-22684202 Msa0844310:intron 35.0%
! GACGTTTATGACAAAAGCAT+TGG - chr5_4:22684228-22684247 None:intergenic 35.0%
GATGCTTCGATAAATTCCAT+TGG - chr5_4:22684582-22684601 None:intergenic 35.0%
! GTTAGCATATTTGGTAGCTA+AGG + chr5_4:22684888-22684907 Msa0844310:three_prime_UTR 35.0%
GACCATGCATGTAAAGAATG+GGG + chr5_4:22683242-22683261 Msa0844310:CDS 40.0%
ACCATGCATGTAAAGAATGG+GGG + chr5_4:22683243-22683262 Msa0844310:CDS 40.0%
GAGGAGTAATAGTTGAAACC+TGG - chr5_4:22683274-22683293 None:intergenic 40.0%
CGGAGTCAATCCTTTATTGA+TGG + chr5_4:22683365-22683384 Msa0844310:CDS 40.0%
AGAGTTCCTAAGTCTTCCAT+TGG + chr5_4:22683410-22683429 Msa0844310:CDS 40.0%
TCTCTTCCAATGGAAGACTT+AGG - chr5_4:22683419-22683438 None:intergenic 40.0%
CAAACCCCTCAATATCTTCT+TGG - chr5_4:22683461-22683480 None:intergenic 40.0%
CAAGAAGATATTGAGGGGTT+TGG + chr5_4:22683459-22683478 Msa0844310:CDS 40.0%
AACATTGTGGCTAGCAAACA+AGG - chr5_4:22683630-22683649 None:intergenic 40.0%
! TCCAATGACATTTTCCGGTT+GGG - chr5_4:22684096-22684115 None:intergenic 40.0%
ACTCAATCCTCATTCTGATG+CGG + chr5_4:22684115-22684134 Msa0844310:intron 40.0%
TTGGAGACCTTCAATGTCAT+TGG - chr5_4:22684165-22684184 None:intergenic 40.0%
GGTCTCCAAATCAGAAAAGA+TGG + chr5_4:22684176-22684195 Msa0844310:intron 40.0%
!! ATGACAAAAGCATTGGTGAG+CGG - chr5_4:22684221-22684240 None:intergenic 40.0%
! CATAAACGTCGGAGACATTT+TGG + chr5_4:22684238-22684257 Msa0844310:intron 40.0%
CTGCTACTAAGAGTTTCATG+TGG - chr5_4:22684391-22684410 None:intergenic 40.0%
CATGAAACTCTTAGTAGCAG+AGG + chr5_4:22684391-22684410 Msa0844310:intron 40.0%
! GTACAAAGAGTTTGAGGTGT+TGG - chr5_4:22684475-22684494 None:intergenic 40.0%
!! TCTTGGTGTTGGACCTATAA+CGG - chr5_4:22684678-22684697 None:intergenic 40.0%
!! AAGACTTGTTACCCCTGAAA+GGG + chr5_4:22684694-22684713 Msa0844310:CDS 40.0%
! AATATTTTCACGCCAGCTAC+AGG + chr5_4:22684760-22684779 Msa0844310:CDS 40.0%
! ATATTTTCACGCCAGCTACA+GGG + chr5_4:22684761-22684780 Msa0844310:CDS 40.0%
GACCATGCATGTAAAGAATG+GGG + chr5_4:22683242-22683261 Msa0844310:CDS 40.0%
ACCATGCATGTAAAGAATGG+GGG + chr5_4:22683243-22683262 Msa0844310:CDS 40.0%
GAGGAGTAATAGTTGAAACC+TGG - chr5_4:22683274-22683293 None:intergenic 40.0%
CGGAGTCAATCCTTTATTGA+TGG + chr5_4:22683365-22683384 Msa0844310:CDS 40.0%
AGAGTTCCTAAGTCTTCCAT+TGG + chr5_4:22683410-22683429 Msa0844310:CDS 40.0%
TCTCTTCCAATGGAAGACTT+AGG - chr5_4:22683419-22683438 None:intergenic 40.0%
CAAACCCCTCAATATCTTCT+TGG - chr5_4:22683461-22683480 None:intergenic 40.0%
CAAGAAGATATTGAGGGGTT+TGG + chr5_4:22683459-22683478 Msa0844310:CDS 40.0%
AACATTGTGGCTAGCAAACA+AGG - chr5_4:22683630-22683649 None:intergenic 40.0%
! TCCAATGACATTTTCCGGTT+GGG - chr5_4:22684096-22684115 None:intergenic 40.0%
ACTCAATCCTCATTCTGATG+CGG + chr5_4:22684115-22684134 Msa0844310:intron 40.0%
TTGGAGACCTTCAATGTCAT+TGG - chr5_4:22684165-22684184 None:intergenic 40.0%
GGTCTCCAAATCAGAAAAGA+TGG + chr5_4:22684176-22684195 Msa0844310:intron 40.0%
!! ATGACAAAAGCATTGGTGAG+CGG - chr5_4:22684221-22684240 None:intergenic 40.0%
! CATAAACGTCGGAGACATTT+TGG + chr5_4:22684238-22684257 Msa0844310:intron 40.0%
CTGCTACTAAGAGTTTCATG+TGG - chr5_4:22684391-22684410 None:intergenic 40.0%
CATGAAACTCTTAGTAGCAG+AGG + chr5_4:22684391-22684410 Msa0844310:intron 40.0%
! GTACAAAGAGTTTGAGGTGT+TGG - chr5_4:22684475-22684494 None:intergenic 40.0%
!! TCTTGGTGTTGGACCTATAA+CGG - chr5_4:22684678-22684697 None:intergenic 40.0%
!! AAGACTTGTTACCCCTGAAA+GGG + chr5_4:22684694-22684713 Msa0844310:CDS 40.0%
! AATATTTTCACGCCAGCTAC+AGG + chr5_4:22684760-22684779 Msa0844310:CDS 40.0%
! ATATTTTCACGCCAGCTACA+GGG + chr5_4:22684761-22684780 Msa0844310:CDS 40.0%
TTTGCAAGCTCTTGGACAGA+AGG - chr5_4:22683074-22683093 None:intergenic 45.0%
AACTCCCTTACAACAAGTCC+CGG + chr5_4:22683166-22683185 Msa0844310:CDS 45.0%
!! ATGACCGGGACTTGTTGTAA+GGG - chr5_4:22683173-22683192 None:intergenic 45.0%
!! AATGACCGGGACTTGTTGTA+AGG - chr5_4:22683174-22683193 None:intergenic 45.0%
ACCCCCATTCTTTACATGCA+TGG - chr5_4:22683247-22683266 None:intergenic 45.0%
TAAAGAATGGGGGTTCTTCC+AGG + chr5_4:22683253-22683272 Msa0844310:CDS 45.0%
TTGTGGCTAGCAAACAAGGA+TGG - chr5_4:22683626-22683645 None:intergenic 45.0%
! CCAATGACATTTTCCGGTTG+GGG - chr5_4:22684095-22684114 None:intergenic 45.0%
! GTCCAATGACATTTTCCGGT+TGG - chr5_4:22684097-22684116 None:intergenic 45.0%
CTCAATCCTCATTCTGATGC+GGG + chr5_4:22684116-22684135 Msa0844310:intron 45.0%
!! CAATGTCATTGGCTTGGAGA+AGG - chr5_4:22684154-22684173 None:intergenic 45.0%
CTCCAAGCCAATGACATTGA+AGG + chr5_4:22684155-22684174 Msa0844310:intron 45.0%
! GACCTTCAATGTCATTGGCT+TGG - chr5_4:22684160-22684179 None:intergenic 45.0%
! AAACGTCGGAGACATTTTGG+AGG + chr5_4:22684241-22684260 Msa0844310:intron 45.0%
GTTGTGCAGATACTGACCAA+TGG + chr5_4:22684563-22684582 Msa0844310:intron 45.0%
AGGTCTGTGGAAAGCTACAA+TGG - chr5_4:22684645-22684664 None:intergenic 45.0%
CCTATAACGGTGCTCATTTG+AGG - chr5_4:22684665-22684684 None:intergenic 45.0%
! CCTCAAATGAGCACCGTTAT+AGG + chr5_4:22684662-22684681 Msa0844310:CDS 45.0%
CTTTCAGGGGTAACAAGTCT+TGG - chr5_4:22684695-22684714 None:intergenic 45.0%
!! CAAGACTTGTTACCCCTGAA+AGG + chr5_4:22684693-22684712 Msa0844310:CDS 45.0%
! TATTTTCACGCCAGCTACAG+GGG + chr5_4:22684762-22684781 Msa0844310:CDS 45.0%
TTTGCAAGCTCTTGGACAGA+AGG - chr5_4:22683074-22683093 None:intergenic 45.0%
AACTCCCTTACAACAAGTCC+CGG + chr5_4:22683166-22683185 Msa0844310:CDS 45.0%
!! ATGACCGGGACTTGTTGTAA+GGG - chr5_4:22683173-22683192 None:intergenic 45.0%
!! AATGACCGGGACTTGTTGTA+AGG - chr5_4:22683174-22683193 None:intergenic 45.0%
ACCCCCATTCTTTACATGCA+TGG - chr5_4:22683247-22683266 None:intergenic 45.0%
TAAAGAATGGGGGTTCTTCC+AGG + chr5_4:22683253-22683272 Msa0844310:CDS 45.0%
TTGTGGCTAGCAAACAAGGA+TGG - chr5_4:22683626-22683645 None:intergenic 45.0%
! CCAATGACATTTTCCGGTTG+GGG - chr5_4:22684095-22684114 None:intergenic 45.0%
! GTCCAATGACATTTTCCGGT+TGG - chr5_4:22684097-22684116 None:intergenic 45.0%
CTCAATCCTCATTCTGATGC+GGG + chr5_4:22684116-22684135 Msa0844310:intron 45.0%
!! CAATGTCATTGGCTTGGAGA+AGG - chr5_4:22684154-22684173 None:intergenic 45.0%
CTCCAAGCCAATGACATTGA+AGG + chr5_4:22684155-22684174 Msa0844310:intron 45.0%
! GACCTTCAATGTCATTGGCT+TGG - chr5_4:22684160-22684179 None:intergenic 45.0%
! AAACGTCGGAGACATTTTGG+AGG + chr5_4:22684241-22684260 Msa0844310:intron 45.0%
GTTGTGCAGATACTGACCAA+TGG + chr5_4:22684563-22684582 Msa0844310:intron 45.0%
AGGTCTGTGGAAAGCTACAA+TGG - chr5_4:22684645-22684664 None:intergenic 45.0%
CCTATAACGGTGCTCATTTG+AGG - chr5_4:22684665-22684684 None:intergenic 45.0%
! CCTCAAATGAGCACCGTTAT+AGG + chr5_4:22684662-22684681 Msa0844310:CDS 45.0%
CTTTCAGGGGTAACAAGTCT+TGG - chr5_4:22684695-22684714 None:intergenic 45.0%
!! CAAGACTTGTTACCCCTGAA+AGG + chr5_4:22684693-22684712 Msa0844310:CDS 45.0%
! TATTTTCACGCCAGCTACAG+GGG + chr5_4:22684762-22684781 Msa0844310:CDS 45.0%
! TTGGCTGCTTTGCAAGCTCT+TGG - chr5_4:22683082-22683101 None:intergenic 50.0%
CGACTCTTCCATCCTATGCA+AGG + chr5_4:22683541-22683560 Msa0844310:intron 50.0%
TAAGCGGGGATTCCTTGCAT+AGG - chr5_4:22683556-22683575 None:intergenic 50.0%
! ACATTTTCCGGTTGGGGACA+AGG - chr5_4:22684089-22684108 None:intergenic 50.0%
CCCCAACCGGAAAATGTCAT+TGG + chr5_4:22684092-22684111 Msa0844310:intron 50.0%
GGCTTGGAGAAGGATGGTTA+AGG - chr5_4:22684144-22684163 None:intergenic 50.0%
!! GTCATTGGCTTGGAGAAGGA+TGG - chr5_4:22684150-22684169 None:intergenic 50.0%
! GGGGTAACAAGTCTTGGTGT+TGG - chr5_4:22684689-22684708 None:intergenic 50.0%
TGAACAGTGCAGCCCTTTCA+GGG - chr5_4:22684709-22684728 None:intergenic 50.0%
TTGAACAGTGCAGCCCTTTC+AGG - chr5_4:22684710-22684729 None:intergenic 50.0%
GACATGATTTCCCCTGTAGC+TGG - chr5_4:22684775-22684794 None:intergenic 50.0%
! TTGGCTGCTTTGCAAGCTCT+TGG - chr5_4:22683082-22683101 None:intergenic 50.0%
CGACTCTTCCATCCTATGCA+AGG + chr5_4:22683541-22683560 Msa0844310:intron 50.0%
TAAGCGGGGATTCCTTGCAT+AGG - chr5_4:22683556-22683575 None:intergenic 50.0%
! ACATTTTCCGGTTGGGGACA+AGG - chr5_4:22684089-22684108 None:intergenic 50.0%
CCCCAACCGGAAAATGTCAT+TGG + chr5_4:22684092-22684111 Msa0844310:intron 50.0%
GGCTTGGAGAAGGATGGTTA+AGG - chr5_4:22684144-22684163 None:intergenic 50.0%
!! GTCATTGGCTTGGAGAAGGA+TGG - chr5_4:22684150-22684169 None:intergenic 50.0%
! GGGGTAACAAGTCTTGGTGT+TGG - chr5_4:22684689-22684708 None:intergenic 50.0%
TGAACAGTGCAGCCCTTTCA+GGG - chr5_4:22684709-22684728 None:intergenic 50.0%
TTGAACAGTGCAGCCCTTTC+AGG - chr5_4:22684710-22684729 None:intergenic 50.0%
GACATGATTTCCCCTGTAGC+TGG - chr5_4:22684775-22684794 None:intergenic 50.0%
CGGGGATTCCTTGCATAGGA+TGG - chr5_4:22683552-22683571 None:intergenic 55.0%
CTATCCTCCTTGTCCCCAAC+CGG + chr5_4:22684079-22684098 Msa0844310:CDS 55.0%
! TTTTCCGGTTGGGGACAAGG+AGG - chr5_4:22684086-22684105 None:intergenic 55.0%
! AAGGCACCCGCATCAGAATG+AGG - chr5_4:22684125-22684144 None:intergenic 55.0%
! CGGTGCTCATTTGAGGTCTG+TGG - chr5_4:22684658-22684677 None:intergenic 55.0%
GAACAGTGCAGCCCTTTCAG+GGG - chr5_4:22684708-22684727 None:intergenic 55.0%
CGGGGATTCCTTGCATAGGA+TGG - chr5_4:22683552-22683571 None:intergenic 55.0%
CTATCCTCCTTGTCCCCAAC+CGG + chr5_4:22684079-22684098 Msa0844310:CDS 55.0%
! TTTTCCGGTTGGGGACAAGG+AGG - chr5_4:22684086-22684105 None:intergenic 55.0%
! AAGGCACCCGCATCAGAATG+AGG - chr5_4:22684125-22684144 None:intergenic 55.0%
! CGGTGCTCATTTGAGGTCTG+TGG - chr5_4:22684658-22684677 None:intergenic 55.0%
GAACAGTGCAGCCCTTTCAG+GGG - chr5_4:22684708-22684727 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 22682996 22684974 22682996 ID=Msa0844310;Name=Msa0844310
chr5_4 mRNA 22682996 22684974 22682996 ID=Msa0844310-mRNA-1;Parent=Msa0844310;Name=Msa0844310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=45|0.33|0.5|1|1|1|4|142|273
chr5_4 exon 22682996 22683274 22682996 ID=Msa0844310-mRNA-1:exon:9234;Parent=Msa0844310-mRNA-1
chr5_4 exon 22683354 22683511 22683354 ID=Msa0844310-mRNA-1:exon:9235;Parent=Msa0844310-mRNA-1
chr5_4 exon 22683938 22684106 22683938 ID=Msa0844310-mRNA-1:exon:9236;Parent=Msa0844310-mRNA-1
chr5_4 exon 22684572 22684974 22684572 ID=Msa0844310-mRNA-1:exon:9237;Parent=Msa0844310-mRNA-1
chr5_4 five_prime_UTR 22682996 22683040 22682996 ID=Msa0844310-mRNA-1:five_prime_utr;Parent=Msa0844310-mRNA-1
chr5_4 CDS 22683041 22683274 22683041 ID=Msa0844310-mRNA-1:cds;Parent=Msa0844310-mRNA-1
chr5_4 CDS 22683354 22683511 22683354 ID=Msa0844310-mRNA-1:cds;Parent=Msa0844310-mRNA-1
chr5_4 CDS 22683938 22684106 22683938 ID=Msa0844310-mRNA-1:cds;Parent=Msa0844310-mRNA-1
chr5_4 CDS 22684572 22684832 22684572 ID=Msa0844310-mRNA-1:cds;Parent=Msa0844310-mRNA-1
chr5_4 three_prime_UTR 22684833 22684974 22684833 ID=Msa0844310-mRNA-1:three_prime_utr;Parent=Msa0844310-mRNA-1
Gene Sequence

>Msa0844310

ATGTTCAAGTTTGGAAACTCATTATTGGTGCCTTCTGTCCAAGAGCTTGCAAAGCAGCCAAACATAGAAGAAATTCCAGAACAATATCTTCATCCAAATCAAGACCCTATTAATGTATCAAATACAACTCCCTTACAACAAGTCCCGGTCATTGACCTAAGTAAATTGTTATCTGAAGATGCAACTGAGCTAGAGAAGCTAGACCATGCATGTAAAGAATGGGGGTTCTTCCAGTTGATTAATCACGGAGTCAATCCTTTATTGATGGAAAATGTGAAGATAGGTGTTCAAGAGTTCCTAAGTCTTCCATTGGAAGAGAAGAAGAAATTTTGGCAAAACCAAGAAGATATTGAGGGGTTTGGTCAACTGCATGTTTTATCTGAGAATCAAAAAGATAATTTAGAAACCTATTGTTTAGAATTGAAAAATGTTTGCATCACAATCATCAAACATATGTCAAAAGCTCTTAAAGTTGAACCAAATGAACTGCTAGCCTTAATTGATGATATAACTCAATCAATGAGGATGAATTACTATCCTCCTTGTCCCCAACCGGAAAATATACTGACCAATGGAATTTATCGAAGCATCGAACATCGAGCTACAATTAACTCAAAGAAAGAGAGGATTTCCATTGTAGCTTTCCACAGACCTCAAATGAGCACCGTTATAGGTCCAACACCAAGACTTGTTACCCCTGAAAGGGCTGCACTGTTCAAAACACTTACCGTTGAAGATTACTACAAAGTAATATTTTCACGCCAGCTACAGGGGAAATCATGTCTTGATCTTATGAGAATTCAAAAAGATAATAGGAAGTGA
Protein sequence

>Msa0844310

MFKFGNSLLVPSVQELAKQPNIEEIPEQYLHPNQDPINVSNTTPLQQVPVIDLSKLLSEDATELEKLDHACKEWGFFQLINHGVNPLLMENVKIGVQEFLSLPLEEKKKFWQNQEDIEGFGQLHVLSENQKDNLETYCLELKNVCITIIKHMSKALKVEPNELLALIDDITQSMRMNYYPPCPQPENILTNGIYRSIEHRATINSKKERISIVAFHRPQMSTVIGPTPRLVTPERAALFKTLTVEDYYKVIFSRQLQGKSCLDLMRIQKDNRK*