AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567570 MtrunA17_Chr8g0382281 97.460 315 8 0 1 315 1 315 0.0 625
Msa0567570 MtrunA17_Chr5g0425971 66.349 315 106 0 1 315 1 315 2.87e-155 437
Msa0567570 MtrunA17_Chr8g0352611 51.429 315 151 2 1 315 1 313 5.11e-105 309
Msa0567570 MtrunA17_Chr3g0083921 50.476 315 155 1 1 315 1 314 1.15e-103 306
Msa0567570 MtrunA17_Chr3g0083901 49.524 315 157 2 1 314 1 314 9.98e-103 303
Msa0567570 MtrunA17_Chr8g0352621 51.118 313 149 2 1 312 1 310 1.43e-102 303
Msa0567570 MtrunA17_Chr8g0352591 48.397 312 149 2 1 312 1 300 7.79e-93 278
Msa0567570 MtrunA17_Chr2g0293441 43.234 303 172 0 12 314 11 313 1.69e-89 270
Msa0567570 MtrunA17_Chr8g0352571 42.857 315 177 1 1 312 1 315 4.25e-82 251
Msa0567570 MtrunA17_Chr8g0393281 37.855 317 193 3 1 315 1 315 1.46e-72 226
Msa0567570 MtrunA17_Chr1g0162071 36.076 316 198 3 1 314 1 314 1.27e-66 211
Msa0567570 MtrunA17_Chr6g0479411 35.783 313 199 2 1 312 28 339 5.00e-65 208
Msa0567570 MtrunA17_Chr6g0479421 37.580 314 192 3 1 312 1 312 1.11e-64 206
Msa0567570 MtrunA17_Chr1g0210981 36.624 314 195 3 1 312 1 312 1.81e-62 201
Msa0567570 MtrunA17_Chr6g0479391 36.943 314 194 3 1 312 1 312 3.24e-56 184
Msa0567570 MtrunA17_Chr8g0352581 36.792 318 172 8 14 312 4 311 3.59e-50 169
Msa0567570 MtrunA17_Chr6g0461141 26.277 274 194 5 45 310 34 307 4.93e-23 97.1
Msa0567570 MtrunA17_Chr3g0084011 51.351 74 35 1 1 74 1 73 1.47e-17 77.0
Msa0567570 MtrunA17_Chr3g0084021 56.061 66 29 0 145 210 5 70 1.72e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567570 AT5G65020.1 71.656 314 88 1 1 313 1 314 4.40e-170 474
Msa0567570 AT5G10230.1 71.019 314 91 0 1 314 1 314 1.87e-167 468
Msa0567570 AT5G10220.1 69.304 316 95 1 1 314 1 316 3.07e-162 455
Msa0567570 AT5G65020.2 72.664 289 78 1 26 313 11 299 2.59e-157 442
Msa0567570 AT1G35720.1 66.772 316 104 1 1 315 1 316 8.54e-155 436
Msa0567570 AT5G12380.1 51.118 313 152 1 1 313 1 312 1.44e-110 323
Msa0567570 AT2G38760.1 42.138 318 178 2 1 312 1 318 1.63e-82 252
Msa0567570 AT1G68090.1 37.380 313 195 1 1 312 1 313 8.44e-64 204
Msa0567570 AT1G68090.2 37.349 249 151 3 1 244 1 249 2.08e-43 149
Msa0567570 AT2G38750.2 35.526 304 171 6 26 311 2 298 2.87e-43 150
Msa0567570 AT2G38750.1 35.505 307 173 6 23 311 16 315 4.08e-43 151

Find 88 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGAGGGCAGCAATTA+AGG 0.189714 4_1:+68866257 Msa0567570:CDS
AATCACTATAACAATGAGTT+TGG 0.243154 4_1:+68865897 Msa0567570:CDS
ACCCCATAATTCATGGAAAA+AGG 0.279086 4_1:+68866787 Msa0567570:three_prime_UTR
AATATAATCGATCCGTAATA+AGG 0.286006 4_1:-68866754 None:intergenic
TCATATTTCTCTCCTTATTA+CGG 0.324655 4_1:+68866742 Msa0567570:three_prime_UTR
TCGCCATTGTGTTTGTGTTC+AGG 0.345562 4_1:-68864205 None:intergenic
ATCTCCACTTGAACTTCTTA+AGG 0.350377 4_1:+68865270 Msa0567570:CDS
TCATGAGAAGATTGCGGATA+AGG 0.357945 4_1:+68865806 Msa0567570:CDS
GATGTTGCCTATCATACTTC+TGG 0.369007 4_1:+68865337 Msa0567570:CDS
GTAGTCATGGAGTGGCTGTT+TGG 0.374106 4_1:+68866532 Msa0567570:three_prime_UTR
GCAATTGACAAAGACACTTC+TGG 0.392622 4_1:+68866447 Msa0567570:CDS
TACGCATACCCCATAATTCA+TGG 0.395314 4_1:+68866780 Msa0567570:three_prime_UTR
AGTTCCTCAAAATATTTCTC+AGG 0.401647 4_1:-68866291 None:intergenic
TTATTGAGGGCAGCAATTAA+GGG 0.414248 4_1:+68866258 Msa0567570:CDS
ATCACTATAACAATGAGTTT+GGG 0.415323 4_1:+68865898 Msa0567570:CDS
AGCTGTTTCATTATTTAAGA+AGG 0.431198 4_1:-68866718 None:intergenic
GAGGAACACTGTTTCTTCTC+TGG 0.435446 4_1:-68866416 None:intergenic
GCAGGATTTGGAAACTGATT+CGG 0.447953 4_1:+68866218 Msa0567570:intron
TGTGGGCATACACCGTTATG+AGG 0.458266 4_1:+68865737 Msa0567570:CDS
TTGTTGTTACAATCCTGATC+AGG 0.458748 4_1:-68865845 None:intergenic
TCTCTTGATAGTATAGAATT+CGG 0.462339 4_1:+68866598 Msa0567570:three_prime_UTR
ACAGGATGGGGAACGAATGA+AGG 0.469249 4_1:+68864798 Msa0567570:intron
GATAGGCAACATCTTCTTCA+AGG 0.470858 4_1:-68865327 None:intergenic
ACAATCATGATGACCTGATC+AGG 0.471756 4_1:+68865832 Msa0567570:CDS
CAAAATCACGCTGATGATGA+AGG 0.476971 4_1:-68866568 None:intergenic
AACAGCCACTCCATGACTAC+TGG 0.479223 4_1:-68866529 None:intergenic
ATGAATATCTGAAATTATTG+AGG 0.486467 4_1:+68866244 Msa0567570:CDS
AGCTGTGCTGCTGTGGACAT+TGG 0.493673 4_1:+68865156 Msa0567570:CDS
GAAAATTCTCCTTGCACTGA+TGG 0.493991 4_1:+68866479 Msa0567570:CDS
GAGAAGAAACAGTGTTCCTC+TGG 0.495918 4_1:+68866419 Msa0567570:CDS
GAGCTGCATTTCTATGAGCC+AGG 0.520838 4_1:-68864836 None:intergenic
CTTTAAGAAGATCTTCTCCA+TGG 0.522934 4_1:-68864893 None:intergenic
AGTTTATTAAACTTATCTCC+AGG 0.527652 4_1:+68866830 Msa0567570:three_prime_UTR
TGAATATCTGAAATTATTGA+GGG 0.538168 4_1:+68866245 Msa0567570:CDS
TAGGCTGGCTATAAACAAGA+TGG 0.541067 4_1:+68866317 Msa0567570:CDS
AGCCAATGTTGGGAGGGAGC+AGG 0.542457 4_1:-68864145 None:intergenic
AAAATTCTCCTTGCACTGAT+GGG 0.542533 4_1:+68866480 Msa0567570:CDS
AACAGAAAGCTGTGCTGCTG+TGG 0.544066 4_1:+68865149 Msa0567570:intron
AATTGTTCACTGTCTTCTGA+TGG 0.548405 4_1:-68864257 None:intergenic
AAGTTCAAGTGGAGATCTTG+TGG 0.549416 4_1:-68865263 None:intergenic
GATGGAGAAGGAACGTGAGA+GGG 0.549677 4_1:-68864239 None:intergenic
ACTTGAAACAAACACTCCCT+TGG 0.550478 4_1:-68866810 None:intergenic
CTTAATCTGTCCAGTAGTCA+TGG 0.553997 4_1:+68866519 Msa0567570:three_prime_UTR
TCTTGTTTATAGCCAGCCTA+AGG 0.557307 4_1:-68866314 None:intergenic
AGGCTTGATAATATCGATCC+TGG 0.557589 4_1:+68864818 Msa0567570:CDS
ATGAATTATGGGGTATGCGT+AGG 0.559037 4_1:-68866778 None:intergenic
AACCTGCTCCCTCCCAACAT+TGG 0.565034 4_1:+68864143 Msa0567570:five_prime_UTR
GTTCCTCAAAATATTTCTCA+GGG 0.565806 4_1:-68866290 None:intergenic
GCTGCTGTGGACATTGGATC+CGG 0.567043 4_1:+68865162 Msa0567570:CDS
GGGTCTGCGTGTAAGTTTCG+CGG 0.567457 4_1:-68864872 None:intergenic
TGAATGCTGAAAGCCAATGT+TGG 0.567768 4_1:-68864156 None:intergenic
GATGTCACCAGAAGTATGAT+AGG 0.569427 4_1:-68865344 None:intergenic
GAATGCTGAAAGCCAATGTT+GGG 0.578303 4_1:-68864155 None:intergenic
GGTTGATTTGCAGCGAATTG+CGG 0.585356 4_1:+68866386 Msa0567570:CDS
AAAATCACGCTGATGATGAA+GGG 0.586986 4_1:-68866567 None:intergenic
AAGTGTCTTTGTCAATTGCA+CGG 0.589714 4_1:-68866443 None:intergenic
GTGATATGTATGAACTATTG+TGG 0.591619 4_1:+68866645 Msa0567570:three_prime_UTR
TTTAAGAAGATCTTCTCCAT+GGG 0.594102 4_1:-68864892 None:intergenic
TTGTCAATTGCACGGTCCAG+AGG 0.595483 4_1:-68866435 None:intergenic
TCACCTCATCTCCCTCATAA+CGG 0.595788 4_1:-68865749 None:intergenic
TGATGGAGAAGGAACGTGAG+AGG 0.596195 4_1:-68864240 None:intergenic
TAGAATTCGGTGACTTGCTG+TGG 0.596979 4_1:+68866611 Msa0567570:three_prime_UTR
ATAGGCAACATCTTCTTCAA+GGG 0.598603 4_1:-68865326 None:intergenic
TGATTTGCAGCGAATTGCGG+AGG 0.598869 4_1:+68866389 Msa0567570:CDS
TGAAAATGCTCTTACTAGAG+TGG 0.606160 4_1:+68866347 Msa0567570:CDS
CATCATGTCCCATCAGTGCA+AGG 0.606991 4_1:-68866488 None:intergenic
ATTGCTTCATGAGAAGATTG+CGG 0.611914 4_1:+68865800 Msa0567570:CDS
GTGGGCATACACCGTTATGA+GGG 0.616438 4_1:+68865738 Msa0567570:CDS
GCTGAAAGCCAATGTTGGGA+GGG 0.620580 4_1:-68864151 None:intergenic
GAAACTTACACGCAGACCCA+TGG 0.623172 4_1:+68864876 Msa0567570:CDS
AGGCTGGCTATAAACAAGAT+GGG 0.624496 4_1:+68866318 Msa0567570:CDS
TGCTGAAAGCCAATGTTGGG+AGG 0.625016 4_1:-68864152 None:intergenic
AGATGAGGTGAACATGACAT+TGG 0.629033 4_1:+68865761 Msa0567570:CDS
TAACGGTGTATGCCCACAAG+AGG 0.631350 4_1:-68865732 None:intergenic
CTCAAAATATTTCTCAGGGT+AGG 0.640542 4_1:-68866286 None:intergenic
TCACTGTCTTCTGATGGAGA+AGG 0.641986 4_1:-68864251 None:intergenic
ATGGAGAAGGAACGTGAGAG+GGG 0.642321 4_1:-68864238 None:intergenic
TTTGCCTTAAGAAGTTCAAG+TGG 0.642700 4_1:-68865274 None:intergenic
ACACCGTTATGAGGGAGATG+AGG 0.647772 4_1:+68865746 Msa0567570:CDS
TCTGTCCAGTAGTCATGGAG+TGG 0.655004 4_1:+68866524 Msa0567570:three_prime_UTR
TTCAAACAATTCGATCATCG+TGG 0.667000 4_1:+68865231 Msa0567570:CDS
TACTTCTGGTGACATCCGCA+AGG 0.668178 4_1:+68865351 Msa0567570:CDS
AGTGGTGACAACTAGAGCTG+AGG 0.671413 4_1:+68866365 Msa0567570:CDS
GTTTGGGAATGTAATAGACA+AGG 0.682197 4_1:+68865914 Msa0567570:CDS
ATCGATCTGTGTGTATAATG+TGG 0.684795 4_1:-68864182 None:intergenic
TGATCAGGATTGTAACAACA+AGG 0.686508 4_1:+68865847 Msa0567570:CDS
GAAGACAGTGAACAATTGCG+CGG 0.707759 4_1:+68864263 Msa0567570:CDS
GATCCTGAACACAAACACAA+TGG 0.715353 4_1:+68864202 Msa0567570:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTAAAATTTTGATATA+TGG + chr4_1:68864950-68864969 Msa0567570:intron 10.0%
!!! TAAATAATATGTTTTGAATA+TGG + chr4_1:68866671-68866690 Msa0567570:three_prime_UTR 10.0%
!! ATATTTCTTAAAGAGAAAAA+TGG - chr4_1:68866042-68866061 None:intergenic 15.0%
!!! ATTAACTTCCTTTTAATTAA+AGG + chr4_1:68866096-68866115 Msa0567570:intron 15.0%
!!! TTAACTTCCTTTTAATTAAA+GGG + chr4_1:68866097-68866116 Msa0567570:intron 15.0%
!! TGAAATAAAAGTCAAAGAAA+TGG - chr4_1:68864316-68864335 None:intergenic 20.0%
!! CTAATATCTTAATTAGATCA+TGG + chr4_1:68864414-68864433 Msa0567570:intron 20.0%
!!! ATATTTCTAGTTAATGAATG+TGG + chr4_1:68864526-68864545 Msa0567570:intron 20.0%
!! CAAGAAATTAGTAAGTTTAA+GGG - chr4_1:68865381-68865400 None:intergenic 20.0%
!! TCAAGAAATTAGTAAGTTTA+AGG - chr4_1:68865382-68865401 None:intergenic 20.0%
!!! TGTAAATCTTTTCAACTTTA+AGG + chr4_1:68865501-68865520 Msa0567570:intron 20.0%
!! AAAGGTTAAATACAAATAAC+TGG - chr4_1:68865620-68865639 None:intergenic 20.0%
!! ACAGAAAAAAGAATCATAAA+TGG - chr4_1:68865954-68865973 None:intergenic 20.0%
!! CTTCATCAATAATATGATTA+TGG - chr4_1:68866074-68866093 None:intergenic 20.0%
!! CTATAATCCCTTTAATTAAA+AGG - chr4_1:68866107-68866126 None:intergenic 20.0%
!!! GATAACCTTTTTTTTTACTA+GGG + chr4_1:68866163-68866182 Msa0567570:intron 20.0%
!!! ATGAATATCTGAAATTATTG+AGG + chr4_1:68866244-68866263 Msa0567570:CDS 20.0%
!!! TGAATATCTGAAATTATTGA+GGG + chr4_1:68866245-68866264 Msa0567570:CDS 20.0%
!! TATTTCCAAAAAATTATTCC+TGG - chr4_1:68866851-68866870 None:intergenic 20.0%
! TAAAAGTCAAAGAAATGGAT+CGG - chr4_1:68864311-68864330 None:intergenic 25.0%
!! TTTTTCCTTTGTGTTTTTCA+TGG + chr4_1:68864717-68864736 Msa0567570:intron 25.0%
! TCAACAATTGTTAGTGAAAA+TGG - chr4_1:68865024-68865043 None:intergenic 25.0%
! TATATGAATAACCTTGACTA+AGG + chr4_1:68865078-68865097 Msa0567570:intron 25.0%
!!! CAAGGTATTTTCATGTAATA+AGG + chr4_1:68865109-68865128 Msa0567570:intron 25.0%
! AAAATCTTCCAAAATTTACG+TGG + chr4_1:68865478-68865497 Msa0567570:intron 25.0%
!! ATTCTTTTGACATAAATCTG+AGG - chr4_1:68865552-68865571 None:intergenic 25.0%
! GTTAAATACAAATAACTGGT+TGG - chr4_1:68865616-68865635 None:intergenic 25.0%
! AACAAAATTTCATCAGACAA+GGG - chr4_1:68865685-68865704 None:intergenic 25.0%
! AAACAAAATTTCATCAGACA+AGG - chr4_1:68865686-68865705 None:intergenic 25.0%
! AATCACTATAACAATGAGTT+TGG + chr4_1:68865897-68865916 Msa0567570:CDS 25.0%
! ATCACTATAACAATGAGTTT+GGG + chr4_1:68865898-68865917 Msa0567570:CDS 25.0%
! TCAATAATATGATTATGGCT+GGG - chr4_1:68866069-68866088 None:intergenic 25.0%
! ATCAATAATATGATTATGGC+TGG - chr4_1:68866070-68866089 None:intergenic 25.0%
! TCAATTTCTTCTGTAGAAAA+AGG + chr4_1:68866141-68866160 Msa0567570:intron 25.0%
!!! GGATAACCTTTTTTTTTACT+AGG + chr4_1:68866162-68866181 Msa0567570:intron 25.0%
! ACAAACCCTAGTAAAAAAAA+AGG - chr4_1:68866171-68866190 None:intergenic 25.0%
!! TCTCTTGATAGTATAGAATT+CGG + chr4_1:68866598-68866617 Msa0567570:three_prime_UTR 25.0%
!! AGCTGTTTCATTATTTAAGA+AGG - chr4_1:68866721-68866740 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG + chr4_1:68866742-68866761 Msa0567570:three_prime_UTR 25.0%
! AATATAATCGATCCGTAATA+AGG - chr4_1:68866757-68866776 None:intergenic 25.0%
! AGTTTATTAAACTTATCTCC+AGG + chr4_1:68866830-68866849 Msa0567570:three_prime_UTR 25.0%
!!! TATCTCCAGGAATAATTTTT+TGG + chr4_1:68866843-68866862 Msa0567570:three_prime_UTR 25.0%
AATAAGCAGTGCTCAAATAA+GGG + chr4_1:68864687-68864706 Msa0567570:intron 30.0%
AAACAACAATATGAATGGAC+AGG - chr4_1:68864763-68864782 None:intergenic 30.0%
!! GTCCATTCATATTGTTGTTT+CGG + chr4_1:68864763-68864782 Msa0567570:intron 30.0%
!! TTTCGGTGACATATTTTTAC+AGG + chr4_1:68864780-68864799 Msa0567570:intron 30.0%
!! GTGACATATTTTTACAGGAT+GGG + chr4_1:68864785-68864804 Msa0567570:intron 30.0%
!! TGACATATTTTTACAGGATG+GGG + chr4_1:68864786-68864805 Msa0567570:intron 30.0%
TTTAAGAAGATCTTCTCCAT+GGG - chr4_1:68864895-68864914 None:intergenic 30.0%
!! AGAACTTTCAAGTGATTTTG+AGG + chr4_1:68864926-68864945 Msa0567570:CDS 30.0%
!!! CAACATTTTAGTTGCTTGAT+TGG - chr4_1:68865209-68865228 None:intergenic 30.0%
! GATTTACACCACGTAAATTT+TGG - chr4_1:68865489-68865508 None:intergenic 30.0%
GGCATTCTTCTACTAAATAA+AGG - chr4_1:68865531-68865550 None:intergenic 30.0%
GCATAAGCATAAACATGAAA+AGG - chr4_1:68865638-68865657 None:intergenic 30.0%
ACAAAATTTCATCAGACAAG+GGG - chr4_1:68865684-68865703 None:intergenic 30.0%
! TGATTCTTCTCAAAAGCTTT+TGG + chr4_1:68865707-68865726 Msa0567570:intron 30.0%
! TAGACAAGGTATGAATGTTT+TGG + chr4_1:68865928-68865947 Msa0567570:intron 30.0%
AAAGGGCAGATCTAATATAA+TGG + chr4_1:68865992-68866011 Msa0567570:intron 30.0%
GTTCCTCAAAATATTTCTCA+GGG - chr4_1:68866293-68866312 None:intergenic 30.0%
AGTTCCTCAAAATATTTCTC+AGG - chr4_1:68866294-68866313 None:intergenic 30.0%
!! AATATTTTGAGGAACTCCTT+AGG + chr4_1:68866298-68866317 Msa0567570:CDS 30.0%
!!! TCTAGTAAGAGCATTTTCAT+CGG - chr4_1:68866346-68866365 None:intergenic 30.0%
GTGATATGTATGAACTATTG+TGG + chr4_1:68866645-68866664 Msa0567570:three_prime_UTR 30.0%
ATCGATCTGTGTGTATAATG+TGG - chr4_1:68864185-68864204 None:intergenic 35.0%
AATTGTTCACTGTCTTCTGA+TGG - chr4_1:68864260-68864279 None:intergenic 35.0%
TTTGGACTACATGAAGAGAT+CGG - chr4_1:68864605-68864624 None:intergenic 35.0%
GATTCATCGTGATCATGATT+TGG - chr4_1:68864623-68864642 None:intergenic 35.0%
GAATAAGCAGTGCTCAAATA+AGG + chr4_1:68864686-68864705 Msa0567570:intron 35.0%
TCATGCCATGAAAAACACAA+AGG - chr4_1:68864725-68864744 None:intergenic 35.0%
CACCGAAACAACAATATGAA+TGG - chr4_1:68864768-68864787 None:intergenic 35.0%
!! GGTGACATATTTTTACAGGA+TGG + chr4_1:68864784-68864803 Msa0567570:intron 35.0%
! CTTTAAGAAGATCTTCTCCA+TGG - chr4_1:68864896-68864915 None:intergenic 35.0%
TTGACATGAAACCTTAGTCA+AGG - chr4_1:68865092-68865111 None:intergenic 35.0%
TTGACTAAGGTTTCATGTCA+AGG + chr4_1:68865091-68865110 Msa0567570:intron 35.0%
TTCAAACAATTCGATCATCG+TGG + chr4_1:68865231-68865250 Msa0567570:CDS 35.0%
ATCTCCACTTGAACTTCTTA+AGG + chr4_1:68865270-68865289 Msa0567570:CDS 35.0%
TTTGCCTTAAGAAGTTCAAG+TGG - chr4_1:68865277-68865296 None:intergenic 35.0%
!! CTTCAAGGGACTTTTTGAAA+CGG - chr4_1:68865315-68865334 None:intergenic 35.0%
ATAGGCAACATCTTCTTCAA+GGG - chr4_1:68865329-68865348 None:intergenic 35.0%
AAGTTTAAGGGTTTACCTTG+CGG - chr4_1:68865369-68865388 None:intergenic 35.0%
TTCCAAAAATACACCCATCT+TGG + chr4_1:68865579-68865598 Msa0567570:intron 35.0%
AAAAATACACCCATCTTGGT+GGG + chr4_1:68865583-68865602 Msa0567570:intron 35.0%
AAAAACGTCAGATCAAGACA+TGG - chr4_1:68865660-68865679 None:intergenic 35.0%
CAAAATTTCATCAGACAAGG+GGG - chr4_1:68865683-68865702 None:intergenic 35.0%
ATTGCTTCATGAGAAGATTG+CGG + chr4_1:68865800-68865819 Msa0567570:CDS 35.0%
! TTGTTGTTACAATCCTGATC+AGG - chr4_1:68865848-68865867 None:intergenic 35.0%
TGATCAGGATTGTAACAACA+AGG + chr4_1:68865847-68865866 Msa0567570:CDS 35.0%
GTTTGGGAATGTAATAGACA+AGG + chr4_1:68865914-68865933 Msa0567570:CDS 35.0%
ATTATTGAGGGCAGCAATTA+AGG + chr4_1:68866257-68866276 Msa0567570:CDS 35.0%
TTATTGAGGGCAGCAATTAA+GGG + chr4_1:68866258-68866277 Msa0567570:CDS 35.0%
CTCAAAATATTTCTCAGGGT+AGG - chr4_1:68866289-68866308 None:intergenic 35.0%
! CTACCCTGAGAAATATTTTG+AGG + chr4_1:68866287-68866306 Msa0567570:CDS 35.0%
TGAAAATGCTCTTACTAGAG+TGG + chr4_1:68866347-68866366 Msa0567570:CDS 35.0%
AAGTGTCTTTGTCAATTGCA+CGG - chr4_1:68866446-68866465 None:intergenic 35.0%
! AAAATTCTCCTTGCACTGAT+GGG + chr4_1:68866480-68866499 Msa0567570:CDS 35.0%
! AAAATCACGCTGATGATGAA+GGG - chr4_1:68866570-68866589 None:intergenic 35.0%
ACCCCATAATTCATGGAAAA+AGG + chr4_1:68866787-68866806 Msa0567570:three_prime_UTR 35.0%
! GCCTTTTTCCATGAATTATG+GGG - chr4_1:68866791-68866810 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG - chr4_1:68866792-68866811 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG - chr4_1:68866793-68866812 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG + chr4_1:68866793-68866812 Msa0567570:three_prime_UTR 35.0%
AATTCATGGAAAAAGGCCAA+GGG + chr4_1:68866794-68866813 Msa0567570:three_prime_UTR 35.0%
GAATGCTGAAAGCCAATGTT+GGG - chr4_1:68864158-68864177 None:intergenic 40.0%
TGAATGCTGAAAGCCAATGT+TGG - chr4_1:68864159-68864178 None:intergenic 40.0%
GATCCTGAACACAAACACAA+TGG + chr4_1:68864202-68864221 Msa0567570:exon 40.0%
AGTCAAAGAAATGGATCGGT+AGG - chr4_1:68864307-68864326 None:intergenic 40.0%
! AGGCTTGATAATATCGATCC+TGG + chr4_1:68864818-68864837 Msa0567570:CDS 40.0%
AAGTTCAAGTGGAGATCTTG+TGG - chr4_1:68865266-68865285 None:intergenic 40.0%
GATAGGCAACATCTTCTTCA+AGG - chr4_1:68865330-68865349 None:intergenic 40.0%
GATGTTGCCTATCATACTTC+TGG + chr4_1:68865337-68865356 Msa0567570:CDS 40.0%
! GATGTCACCAGAAGTATGAT+AGG - chr4_1:68865347-68865366 None:intergenic 40.0%
! CACCAAGATGGGTGTATTTT+TGG - chr4_1:68865584-68865603 None:intergenic 40.0%
CAAAAATACACCCATCTTGG+TGG + chr4_1:68865582-68865601 Msa0567570:intron 40.0%
!!! AAAGCTTTTGGTTCCTCTTG+TGG + chr4_1:68865719-68865738 Msa0567570:intron 40.0%
!!! AAGCTTTTGGTTCCTCTTGT+GGG + chr4_1:68865720-68865739 Msa0567570:intron 40.0%
AGATGAGGTGAACATGACAT+TGG + chr4_1:68865761-68865780 Msa0567570:CDS 40.0%
TCATGAGAAGATTGCGGATA+AGG + chr4_1:68865806-68865825 Msa0567570:CDS 40.0%
ACAATCATGATGACCTGATC+AGG + chr4_1:68865832-68865851 Msa0567570:CDS 40.0%
! ATTAGATCTGCCCTTTTGCT+GGG - chr4_1:68865988-68866007 None:intergenic 40.0%
! TATTAGATCTGCCCTTTTGC+TGG - chr4_1:68865989-68866008 None:intergenic 40.0%
GCAGGATTTGGAAACTGATT+CGG + chr4_1:68866218-68866237 Msa0567570:intron 40.0%
! TCTTGTTTATAGCCAGCCTA+AGG - chr4_1:68866317-68866336 None:intergenic 40.0%
! TAGGCTGGCTATAAACAAGA+TGG + chr4_1:68866317-68866336 Msa0567570:CDS 40.0%
! AGGCTGGCTATAAACAAGAT+GGG + chr4_1:68866318-68866337 Msa0567570:CDS 40.0%
GCAATTGACAAAGACACTTC+TGG + chr4_1:68866447-68866466 Msa0567570:CDS 40.0%
GAAAATTCTCCTTGCACTGA+TGG + chr4_1:68866479-68866498 Msa0567570:CDS 40.0%
CTTAATCTGTCCAGTAGTCA+TGG + chr4_1:68866519-68866538 Msa0567570:three_prime_UTR 40.0%
! CAAAATCACGCTGATGATGA+AGG - chr4_1:68866571-68866590 None:intergenic 40.0%
ATGAATTATGGGGTATGCGT+AGG - chr4_1:68866781-68866800 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG + chr4_1:68866780-68866799 Msa0567570:three_prime_UTR 40.0%
ACTTGAAACAAACACTCCCT+TGG - chr4_1:68866813-68866832 None:intergenic 40.0%
TCGCCATTGTGTTTGTGTTC+AGG - chr4_1:68864208-68864227 None:intergenic 45.0%
TCACTGTCTTCTGATGGAGA+AGG - chr4_1:68864254-68864273 None:intergenic 45.0%
GAAGACAGTGAACAATTGCG+CGG + chr4_1:68864263-68864282 Msa0567570:CDS 45.0%
ACACTCCTGTGTTACGTGTT+TGG + chr4_1:68864460-68864479 Msa0567570:intron 45.0%
TCCTGTGTTACGTGTTTGGT+TGG + chr4_1:68864464-68864483 Msa0567570:intron 45.0%
ACCAACCAAACACGTAACAC+AGG - chr4_1:68864468-68864487 None:intergenic 45.0%
GGCTAAAAATGCATCACGCT+CGG - chr4_1:68865188-68865207 None:intergenic 45.0%
TCACCTCATCTCCCTCATAA+CGG - chr4_1:68865752-68865771 None:intergenic 45.0%
TTGCAACACTCCCAGCAAAA+GGG + chr4_1:68865975-68865994 Msa0567570:intron 45.0%
TCGAACTAACGTTGAGCTTC+TGG + chr4_1:68866193-68866212 Msa0567570:intron 45.0%
!! TTTTGAGGAACTCCTTAGGC+TGG + chr4_1:68866302-68866321 Msa0567570:CDS 45.0%
!! GGTTGATTTGCAGCGAATTG+CGG + chr4_1:68866386-68866405 Msa0567570:CDS 45.0%
! GAGGAACACTGTTTCTTCTC+TGG - chr4_1:68866419-68866438 None:intergenic 45.0%
GAGAAGAAACAGTGTTCCTC+TGG + chr4_1:68866419-68866438 Msa0567570:CDS 45.0%
! TCATCAGCGTGATTTTGCTG+CGG + chr4_1:68866574-68866593 Msa0567570:three_prime_UTR 45.0%
!! TAGAATTCGGTGACTTGCTG+TGG + chr4_1:68866611-68866630 Msa0567570:three_prime_UTR 45.0%
!!! ATTTTTATTATTATTACTTT+TGG + chr4_1:68864378-68864397 Msa0567570:intron 5.0%
GCTGAAAGCCAATGTTGGGA+GGG - chr4_1:68864154-68864173 None:intergenic 50.0%
TGCTGAAAGCCAATGTTGGG+AGG - chr4_1:68864155-68864174 None:intergenic 50.0%
ATGGAGAAGGAACGTGAGAG+GGG - chr4_1:68864241-68864260 None:intergenic 50.0%
GATGGAGAAGGAACGTGAGA+GGG - chr4_1:68864242-68864261 None:intergenic 50.0%
TGATGGAGAAGGAACGTGAG+AGG - chr4_1:68864243-68864262 None:intergenic 50.0%
! CAATTGCGCGGTGCTTTTCA+AGG + chr4_1:68864275-68864294 Msa0567570:CDS 50.0%
ACAGGATGGGGAACGAATGA+AGG + chr4_1:68864798-68864817 Msa0567570:intron 50.0%
GAGCTGCATTTCTATGAGCC+AGG - chr4_1:68864839-68864858 None:intergenic 50.0%
GAAACTTACACGCAGACCCA+TGG + chr4_1:68864876-68864895 Msa0567570:CDS 50.0%
! AACAGAAAGCTGTGCTGCTG+TGG + chr4_1:68865149-68865168 Msa0567570:intron 50.0%
AAAAATGCATCACGCTCGGC+CGG - chr4_1:68865184-68865203 None:intergenic 50.0%
TACTTCTGGTGACATCCGCA+AGG + chr4_1:68865351-68865370 Msa0567570:CDS 50.0%
AATACACCCATCTTGGTGGG+TGG + chr4_1:68865586-68865605 Msa0567570:intron 50.0%
TAACGGTGTATGCCCACAAG+AGG - chr4_1:68865735-68865754 None:intergenic 50.0%
TGTGGGCATACACCGTTATG+AGG + chr4_1:68865737-68865756 Msa0567570:CDS 50.0%
GTGGGCATACACCGTTATGA+GGG + chr4_1:68865738-68865757 Msa0567570:CDS 50.0%
ACACCGTTATGAGGGAGATG+AGG + chr4_1:68865746-68865765 Msa0567570:CDS 50.0%
GTTGCAACACTCCCAGCAAA+AGG + chr4_1:68865974-68865993 Msa0567570:intron 50.0%
AGTGGTGACAACTAGAGCTG+AGG + chr4_1:68866365-68866384 Msa0567570:CDS 50.0%
! TGATTTGCAGCGAATTGCGG+AGG + chr4_1:68866389-68866408 Msa0567570:CDS 50.0%
TTGTCAATTGCACGGTCCAG+AGG - chr4_1:68866438-68866457 None:intergenic 50.0%
CATCATGTCCCATCAGTGCA+AGG - chr4_1:68866491-68866510 None:intergenic 50.0%
TCTGTCCAGTAGTCATGGAG+TGG + chr4_1:68866524-68866543 Msa0567570:three_prime_UTR 50.0%
AACAGCCACTCCATGACTAC+TGG - chr4_1:68866532-68866551 None:intergenic 50.0%
GTAGTCATGGAGTGGCTGTT+TGG + chr4_1:68866532-68866551 Msa0567570:three_prime_UTR 50.0%
AACCTGCTCCCTCCCAACAT+TGG + chr4_1:68864143-68864162 Msa0567570:five_prime_UTR 55.0%
GGGTCTGCGTGTAAGTTTCG+CGG - chr4_1:68864875-68864894 None:intergenic 55.0%
! AGCTGTGCTGCTGTGGACAT+TGG + chr4_1:68865156-68865175 Msa0567570:CDS 55.0%
GCTGCTGTGGACATTGGATC+CGG + chr4_1:68865162-68865181 Msa0567570:CDS 55.0%
GGCTATCCACCCACCAAGAT+GGG - chr4_1:68865595-68865614 None:intergenic 55.0%
TGGCTATCCACCCACCAAGA+TGG - chr4_1:68865596-68865615 None:intergenic 55.0%
! AACGTTGAGCTTCTGGCTGC+AGG + chr4_1:68866200-68866219 Msa0567570:intron 55.0%
! GAGCTTCTGGCTGCAGGATT+TGG + chr4_1:68866206-68866225 Msa0567570:intron 55.0%
AGCCAATGTTGGGAGGGAGC+AGG - chr4_1:68864148-68864167 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 68864134 68866878 68864134 ID=Msa0567570;Name=Msa0567570
chr4_1 mRNA 68864134 68866878 68864134 ID=Msa0567570-mRNA-1;Parent=Msa0567570;Name=Msa0567570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=87|1|1|1|1|1|5|363|315
chr4_1 exon 68864134 68864296 68864134 ID=Msa0567570-mRNA-1:exon:22783;Parent=Msa0567570-mRNA-1
chr4_1 exon 68864802 68864947 68864802 ID=Msa0567570-mRNA-1:exon:22784;Parent=Msa0567570-mRNA-1
chr4_1 exon 68865154 68865372 68865154 ID=Msa0567570-mRNA-1:exon:22785;Parent=Msa0567570-mRNA-1
chr4_1 exon 68865723 68865935 68865723 ID=Msa0567570-mRNA-1:exon:22786;Parent=Msa0567570-mRNA-1
chr4_1 exon 68866222 68866878 68866222 ID=Msa0567570-mRNA-1:exon:22787;Parent=Msa0567570-mRNA-1
chr4_1 five_prime_UTR 68864134 68864220 68864134 ID=Msa0567570-mRNA-1:five_prime_utr;Parent=Msa0567570-mRNA-1
chr4_1 CDS 68864221 68864296 68864221 ID=Msa0567570-mRNA-1:cds;Parent=Msa0567570-mRNA-1
chr4_1 CDS 68864802 68864947 68864802 ID=Msa0567570-mRNA-1:cds;Parent=Msa0567570-mRNA-1
chr4_1 CDS 68865154 68865372 68865154 ID=Msa0567570-mRNA-1:cds;Parent=Msa0567570-mRNA-1
chr4_1 CDS 68865723 68865935 68865723 ID=Msa0567570-mRNA-1:cds;Parent=Msa0567570-mRNA-1
chr4_1 CDS 68866222 68866515 68866222 ID=Msa0567570-mRNA-1:cds;Parent=Msa0567570-mRNA-1
chr4_1 three_prime_UTR 68866516 68866878 68866516 ID=Msa0567570-mRNA-1:three_prime_utr;Parent=Msa0567570-mRNA-1
Gene Sequence

>Msa0567570

ATGGCGACATTGAAGATCCCCTCTCACGTTCCTTCTCCATCAGAAGACAGTGAACAATTGCGCGGTGCTTTTCAAGGATGGGGAACGAATGAAGGCTTGATAATATCGATCCTGGCTCATAGAAATGCAGCTCAGCGTAAGTCGATCCGCGAAACTTACACGCAGACCCATGGAGAAGATCTTCTTAAAGATCTTGACAAAGAACTTTCAAGTGATTTTGAGAAAGCTGTGCTGCTGTGGACATTGGATCCGGCCGAGCGTGATGCATTTTTAGCCAATCAAGCAACTAAAATGTTGACTTCAAACAATTCGATCATCGTGGAAATTGCTTCCACAAGATCTCCACTTGAACTTCTTAAGGCAAAGCAAGCATATCAAGTCCGTTTCAAAAAGTCCCTTGAAGAAGATGTTGCCTATCATACTTCTGGTGACATCCGCAAGCTTTTGGTTCCTCTTGTGGGCATACACCGTTATGAGGGAGATGAGGTGAACATGACATTGGCAAAATCTGAAGCTAAATTGCTTCATGAGAAGATTGCGGATAAGGCTTACAATCATGATGACCTGATCAGGATTGTAACAACAAGGAGTAAAGCGCAATTAAATGCAACTTTGAATCACTATAACAATGAGTTTGGGAATGTAATAGACAAGGATTTGGAAACTGATTCGGATGATGAATATCTGAAATTATTGAGGGCAGCAATTAAGGGCTTGACCTACCCTGAGAAATATTTTGAGGAACTCCTTAGGCTGGCTATAAACAAGATGGGAACCGATGAAAATGCTCTTACTAGAGTGGTGACAACTAGAGCTGAGGTTGATTTGCAGCGAATTGCGGAGGAATACCAGAGAAGAAACAGTGTTCCTCTGGACCGTGCAATTGACAAAGACACTTCTGGAGACTATCAGAAAATTCTCCTTGCACTGATGGGACATGATGAGTAA

Protein sequence

>Msa0567570

MATLKIPSHVPSPSEDSEQLRGAFQGWGTNEGLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDKELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQVRFKKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHDDLIRIVTTRSKAQLNATLNHYNNEFGNVIDKDLETDSDDEYLKLLRAAIKGLTYPEKYFEELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQRRNSVPLDRAIDKDTSGDYQKILLALMGHDE*