Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851140 | AES98216.1 | 91.096 | 146 | 10 | 2 | 1 | 143 | 1 | 146 | 1.48e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851140 | sp|B8CXL0|DNAJ_HALOH | 45.055 | 91 | 48 | 1 | 40 | 128 | 1 | 91 | 4.04e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851140 | G7KBI1 | 91.096 | 146 | 10 | 2 | 1 | 143 | 1 | 146 | 7.06e-90 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089700 | Msa0851140 | 0.809632 | 1.719239e-50 | -8.615850e-47 |
| Msa0673620 | Msa0851140 | 0.802183 | 6.329852e-49 | -8.615850e-47 |
| Msa0729740 | Msa0851140 | 0.800671 | 1.292032e-48 | -8.615850e-47 |
| Msa0382050 | Msa0851140 | 0.819243 | 1.286693e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851140 | MtrunA17_Chr5g0427221 | 91.096 | 146 | 10 | 2 | 1 | 143 | 1 | 146 | 1.36e-93 | 266 |
| Msa0851140 | MtrunA17_Chr4g0021141 | 63.000 | 100 | 37 | 0 | 41 | 140 | 18 | 117 | 4.49e-44 | 141 |
| Msa0851140 | MtrunA17_Chr2g0282761 | 46.739 | 92 | 40 | 3 | 45 | 128 | 4 | 94 | 1.14e-16 | 75.1 |
| Msa0851140 | MtrunA17_Chr2g0282741 | 53.125 | 64 | 29 | 1 | 45 | 107 | 4 | 67 | 2.31e-16 | 73.9 |
| Msa0851140 | MtrunA17_Chr7g0263971 | 52.174 | 69 | 32 | 1 | 40 | 107 | 364 | 432 | 2.31e-16 | 74.7 |
| Msa0851140 | MtrunA17_Chr3g0138471 | 54.688 | 64 | 28 | 1 | 45 | 107 | 4 | 67 | 2.44e-16 | 73.9 |
| Msa0851140 | MtrunA17_Chr4g0040501 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 3.10e-15 | 70.9 |
| Msa0851140 | MtrunA17_Chr4g0006391 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 8.71e-15 | 69.7 |
| Msa0851140 | MtrunA17_Chr1g0159491 | 46.479 | 71 | 38 | 0 | 40 | 110 | 1 | 71 | 1.57e-14 | 64.3 |
| Msa0851140 | MtrunA17_Chr5g0426951 | 46.269 | 67 | 36 | 0 | 41 | 107 | 79 | 145 | 1.99e-14 | 68.9 |
| Msa0851140 | MtrunA17_Chr2g0324921 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 5.43e-14 | 67.4 |
| Msa0851140 | MtrunA17_Chr3g0087741 | 42.857 | 70 | 38 | 1 | 38 | 107 | 84 | 151 | 6.59e-14 | 67.4 |
| Msa0851140 | MtrunA17_Chr5g0399201 | 42.254 | 71 | 38 | 1 | 44 | 111 | 11 | 81 | 1.01e-13 | 67.0 |
| Msa0851140 | MtrunA17_Chr5g0414471 | 33.645 | 107 | 63 | 1 | 44 | 142 | 24 | 130 | 2.17e-13 | 65.9 |
| Msa0851140 | MtrunA17_Chr7g0269841 | 48.438 | 64 | 33 | 0 | 44 | 107 | 25 | 88 | 5.62e-13 | 64.7 |
| Msa0851140 | MtrunA17_Chr4g0010781 | 43.284 | 67 | 38 | 0 | 41 | 107 | 82 | 148 | 8.07e-13 | 64.3 |
| Msa0851140 | MtrunA17_Chr8g0344721 | 37.234 | 94 | 44 | 3 | 42 | 124 | 7 | 96 | 8.43e-13 | 63.2 |
| Msa0851140 | MtrunA17_Chr1g0209551 | 31.776 | 107 | 65 | 1 | 44 | 142 | 15 | 121 | 1.60e-12 | 63.5 |
| Msa0851140 | MtrunA17_Chr1g0159511 | 41.463 | 82 | 48 | 0 | 40 | 121 | 1 | 82 | 1.65e-12 | 63.5 |
| Msa0851140 | MtrunA17_Chr7g0271891 | 45.588 | 68 | 33 | 1 | 46 | 109 | 17 | 84 | 2.40e-12 | 60.8 |
| Msa0851140 | MtrunA17_Chr7g0242951 | 42.857 | 70 | 39 | 1 | 41 | 110 | 23 | 91 | 3.34e-12 | 62.8 |
| Msa0851140 | MtrunA17_Chr2g0333221 | 36.937 | 111 | 49 | 4 | 15 | 110 | 30 | 134 | 4.90e-12 | 62.0 |
| Msa0851140 | MtrunA17_Chr5g0415731 | 44.595 | 74 | 33 | 1 | 45 | 110 | 5 | 78 | 6.68e-12 | 59.3 |
| Msa0851140 | MtrunA17_Chr6g0478651 | 46.875 | 64 | 33 | 1 | 44 | 107 | 67 | 129 | 7.81e-12 | 61.6 |
| Msa0851140 | MtrunA17_Chr5g0393371 | 40.244 | 82 | 49 | 0 | 40 | 121 | 1 | 82 | 1.19e-11 | 60.8 |
| Msa0851140 | MtrunA17_Chr3g0123861 | 43.939 | 66 | 36 | 1 | 45 | 110 | 82 | 146 | 1.61e-11 | 60.5 |
| Msa0851140 | MtrunA17_Chr5g0405501 | 42.500 | 80 | 43 | 2 | 30 | 107 | 57 | 135 | 1.68e-11 | 58.5 |
| Msa0851140 | MtrunA17_Chr8g0352451 | 41.111 | 90 | 52 | 1 | 33 | 121 | 59 | 148 | 3.00e-11 | 59.7 |
| Msa0851140 | MtrunA17_Chr6g0476751 | 41.053 | 95 | 51 | 3 | 16 | 107 | 35 | 127 | 7.15e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851140 | AT5G16650.1 | 65.347 | 101 | 35 | 0 | 41 | 141 | 7 | 107 | 7.48e-44 | 140 |
| Msa0851140 | AT5G16650.2 | 65.347 | 101 | 35 | 0 | 41 | 141 | 7 | 107 | 1.56e-43 | 141 |
| Msa0851140 | AT2G33735.1 | 63.063 | 111 | 39 | 2 | 33 | 143 | 11 | 119 | 2.71e-43 | 139 |
| Msa0851140 | AT2G33735.2 | 63.063 | 111 | 39 | 2 | 33 | 143 | 11 | 119 | 2.71e-43 | 139 |
| Msa0851140 | AT3G47940.1 | 52.941 | 68 | 30 | 1 | 45 | 110 | 4 | 71 | 3.14e-16 | 74.3 |
| Msa0851140 | AT5G25530.2 | 53.125 | 64 | 29 | 1 | 45 | 107 | 4 | 67 | 7.78e-16 | 73.2 |
| Msa0851140 | AT1G59725.1 | 52.308 | 65 | 29 | 1 | 45 | 107 | 4 | 68 | 7.09e-15 | 70.1 |
| Msa0851140 | AT4G28480.2 | 51.562 | 64 | 30 | 1 | 45 | 107 | 4 | 67 | 7.30e-15 | 70.1 |
| Msa0851140 | AT5G01390.4 | 49.254 | 67 | 33 | 1 | 45 | 110 | 4 | 70 | 8.49e-15 | 68.9 |
| Msa0851140 | AT4G28480.1 | 51.562 | 64 | 30 | 1 | 45 | 107 | 4 | 67 | 9.13e-15 | 70.1 |
| Msa0851140 | AT5G01390.3 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 9.55e-15 | 68.9 |
| Msa0851140 | AT3G08910.1 | 51.562 | 64 | 30 | 1 | 45 | 107 | 4 | 67 | 1.07e-14 | 69.7 |
| Msa0851140 | AT5G01390.2 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 1.57e-14 | 68.9 |
| Msa0851140 | AT2G20560.1 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 1.65e-14 | 69.3 |
| Msa0851140 | AT5G01390.1 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 2.44e-14 | 68.9 |
| Msa0851140 | AT1G10350.1 | 48.438 | 64 | 32 | 1 | 45 | 107 | 4 | 67 | 4.50e-14 | 68.2 |
| Msa0851140 | AT5G25530.1 | 48.611 | 72 | 28 | 2 | 45 | 107 | 4 | 75 | 1.10e-13 | 67.0 |
| Msa0851140 | AT5G48030.1 | 42.857 | 70 | 40 | 0 | 38 | 107 | 87 | 156 | 2.42e-13 | 66.2 |
| Msa0851140 | AT3G62600.1 | 46.269 | 67 | 36 | 0 | 44 | 110 | 25 | 91 | 2.84e-13 | 65.9 |
| Msa0851140 | AT3G08970.1 | 44.286 | 70 | 38 | 1 | 41 | 110 | 23 | 91 | 4.53e-13 | 65.5 |
| Msa0851140 | AT3G08970.2 | 44.286 | 70 | 38 | 1 | 41 | 110 | 23 | 91 | 4.53e-13 | 65.5 |
| Msa0851140 | AT1G68370.1 | 33.645 | 107 | 63 | 1 | 44 | 142 | 16 | 122 | 8.66e-13 | 64.7 |
| Msa0851140 | AT1G59980.2 | 43.750 | 64 | 36 | 0 | 47 | 110 | 25 | 88 | 1.32e-12 | 63.9 |
| Msa0851140 | AT1G24120.1 | 41.791 | 67 | 39 | 0 | 44 | 110 | 19 | 85 | 1.44e-12 | 63.9 |
| Msa0851140 | AT1G59980.1 | 43.750 | 64 | 36 | 0 | 47 | 110 | 25 | 88 | 1.65e-12 | 63.9 |
| Msa0851140 | AT1G56300.2 | 45.588 | 68 | 33 | 1 | 46 | 109 | 14 | 81 | 1.81e-12 | 60.5 |
| Msa0851140 | AT5G03160.1 | 43.478 | 69 | 38 | 1 | 40 | 107 | 365 | 433 | 3.46e-12 | 63.2 |
| Msa0851140 | AT1G56300.1 | 45.588 | 68 | 33 | 1 | 46 | 109 | 14 | 81 | 3.68e-12 | 60.5 |
| Msa0851140 | AT2G21510.3 | 42.683 | 82 | 47 | 0 | 40 | 121 | 1 | 82 | 8.26e-12 | 61.6 |
| Msa0851140 | AT2G21510.1 | 42.683 | 82 | 47 | 0 | 40 | 121 | 1 | 82 | 8.26e-12 | 61.6 |
| Msa0851140 | AT2G21510.2 | 42.683 | 82 | 47 | 0 | 40 | 121 | 1 | 82 | 9.34e-12 | 61.6 |
| Msa0851140 | AT2G21510.4 | 42.683 | 82 | 47 | 0 | 40 | 121 | 1 | 82 | 9.34e-12 | 61.6 |
| Msa0851140 | AT2G21510.5 | 42.683 | 82 | 47 | 0 | 40 | 121 | 1 | 82 | 1.07e-11 | 61.2 |
| Msa0851140 | AT1G28210.3 | 40.299 | 67 | 40 | 0 | 41 | 107 | 44 | 110 | 1.41e-11 | 61.2 |
| Msa0851140 | AT1G28210.1 | 40.299 | 67 | 40 | 0 | 41 | 107 | 44 | 110 | 1.42e-11 | 61.2 |
| Msa0851140 | AT1G28210.2 | 40.299 | 67 | 40 | 0 | 41 | 107 | 44 | 110 | 1.44e-11 | 61.2 |
| Msa0851140 | AT1G71000.2 | 47.143 | 70 | 33 | 2 | 44 | 109 | 7 | 76 | 1.58e-11 | 58.9 |
| Msa0851140 | AT2G22360.1 | 45.455 | 66 | 35 | 1 | 45 | 110 | 86 | 150 | 1.59e-11 | 61.2 |
| Msa0851140 | AT4G39960.1 | 38.824 | 85 | 49 | 2 | 26 | 110 | 68 | 149 | 1.67e-11 | 60.8 |
| Msa0851140 | AT4G39960.2 | 38.824 | 85 | 49 | 2 | 26 | 110 | 68 | 149 | 1.67e-11 | 60.8 |
| Msa0851140 | AT1G72416.3 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 2.54e-11 | 59.3 |
| Msa0851140 | AT1G71000.1 | 47.143 | 70 | 33 | 2 | 44 | 109 | 7 | 76 | 2.59e-11 | 58.5 |
| Msa0851140 | AT5G18750.1 | 51.562 | 64 | 30 | 1 | 45 | 108 | 66 | 128 | 3.51e-11 | 60.1 |
| Msa0851140 | AT3G17830.1 | 46.032 | 63 | 33 | 1 | 45 | 107 | 63 | 124 | 3.66e-11 | 60.1 |
| Msa0851140 | AT1G21080.3 | 40.244 | 82 | 48 | 1 | 40 | 121 | 1 | 81 | 5.29e-11 | 59.7 |
| Msa0851140 | AT1G21080.1 | 40.244 | 82 | 48 | 1 | 40 | 121 | 1 | 81 | 5.30e-11 | 59.7 |
| Msa0851140 | AT1G72416.1 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 5.77e-11 | 58.2 |
| Msa0851140 | AT1G72416.4 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 6.16e-11 | 57.8 |
| Msa0851140 | AT1G72416.2 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 7.89e-11 | 57.8 |
Find 53 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGAATTTGGTCGGGTTT+TGG | 0.162317 | 5_4:+41207637 | None:intergenic |
| TGATATTGATATTCTTAATT+TGG | 0.163197 | 5_4:-41204040 | Msa0851140:three_prime_UTR |
| AGGAATGTGGGTCGGGAATT+TGG | 0.255023 | 5_4:+41207626 | None:intergenic |
| TCCTGGTCTTTCTGTTTATC+CGG | 0.282566 | 5_4:+41207288 | None:intergenic |
| TCAGGATTATTACAAGATAT+TGG | 0.303213 | 5_4:-41207474 | Msa0851140:intron |
| TTGGCATCAAGCATTCAATT+TGG | 0.313473 | 5_4:-41204447 | Msa0851140:CDS |
| TAATTACATTCGTCTTGCTT+TGG | 0.373388 | 5_4:-41207414 | Msa0851140:intron |
| GAAGAAATCGAAGTTGAGAT+AGG | 0.386812 | 5_4:+41207606 | None:intergenic |
| TTCTTCCCATTCCCACATCA+TGG | 0.397478 | 5_4:+41207696 | None:intergenic |
| AGGAGAGAGTATGACATAAA+CGG | 0.419785 | 5_4:-41205003 | Msa0851140:CDS |
| CATCCACATCCAGTGTCTCT+TGG | 0.421983 | 5_4:-41204401 | Msa0851140:three_prime_UTR |
| ACCGTGACGTGGCCGAATCC+TGG | 0.424294 | 5_4:+41207271 | None:intergenic |
| TTACGAAATGATTAAGTTTG+TGG | 0.434171 | 5_4:+41207774 | None:intergenic |
| GGAGAGAGTATGACATAAAC+GGG | 0.439604 | 5_4:-41205002 | Msa0851140:CDS |
| CCTCAACCATGATGTGGGAA+TGG | 0.450761 | 5_4:-41207702 | Msa0851140:exon |
| CCTGGTCTTTCTGTTTATCC+GGG | 0.450762 | 5_4:+41207289 | None:intergenic |
| ATATTGACTTGCAATGGCCT+TGG | 0.458509 | 5_4:-41204466 | Msa0851140:CDS |
| GATGTGGATGTTTGAGATGC+TGG | 0.466663 | 5_4:+41204414 | None:intergenic |
| TTGAGATAGGAATGTGGGTC+GGG | 0.467627 | 5_4:+41207619 | None:intergenic |
| CTCAACCATGATGTGGGAAT+GGG | 0.469046 | 5_4:-41207701 | Msa0851140:exon |
| TTATTACAAGATATTGGAAG+TGG | 0.477411 | 5_4:-41207468 | Msa0851140:CDS |
| AGATATAAATGAGGCCTACC+AGG | 0.484166 | 5_4:-41207244 | Msa0851140:CDS |
| TGATAATGGCATGCAGTGCC+AGG | 0.488600 | 5_4:+41204362 | None:intergenic |
| CCATTCCCACATCATGGTTG+AGG | 0.501927 | 5_4:+41207702 | None:intergenic |
| GGATTATCTTAACCGTTACA+AGG | 0.513468 | 5_4:-41204494 | Msa0851140:CDS |
| ATGTGGGTCGGGAATTTGGT+CGG | 0.514552 | 5_4:+41207630 | None:intergenic |
| TGTGGGTCGGGAATTTGGTC+GGG | 0.522025 | 5_4:+41207631 | None:intergenic |
| TAAACAGAAAGACCAGGATT+CGG | 0.523730 | 5_4:-41207283 | Msa0851140:CDS |
| CTCTCCTCTCTCTAAACCCA+AGG | 0.525481 | 5_4:-41207584 | Msa0851140:intron |
| AAATTGAATGCTTGATGCCA+AGG | 0.534789 | 5_4:+41204449 | None:intergenic |
| CACTCTCCTCAACCATGATG+TGG | 0.540761 | 5_4:-41207708 | Msa0851140:exon |
| AAGTCTGAAGCTATTCCTCT+AGG | 0.547428 | 5_4:+41204313 | None:intergenic |
| GGAACCTTGGGTTTAGAGAG+AGG | 0.555692 | 5_4:+41207580 | None:intergenic |
| ATATAAATAAATACCCTGGT+AGG | 0.557717 | 5_4:+41207230 | None:intergenic |
| TGTCCAAGAGACACTGGATG+TGG | 0.583526 | 5_4:+41204398 | None:intergenic |
| AACGAGAATATGAGAGTGGT+CGG | 0.584290 | 5_4:+41207731 | None:intergenic |
| GGTCTCATATTGACTTGCAA+TGG | 0.584945 | 5_4:-41204472 | Msa0851140:CDS |
| CGAAGTTGAGATAGGAATGT+GGG | 0.588768 | 5_4:+41207614 | None:intergenic |
| ACCAGGATTCGGCCACGTCA+CGG | 0.591695 | 5_4:-41207272 | Msa0851140:CDS |
| ACTCTCCTCAACCATGATGT+GGG | 0.607401 | 5_4:-41207707 | Msa0851140:exon |
| ATGATTAAGTTTGTGGTGAG+TGG | 0.610684 | 5_4:+41207781 | None:intergenic |
| TATATCTTGAAACCGTGACG+TGG | 0.614774 | 5_4:+41207260 | None:intergenic |
| CCCGGATAAACAGAAAGACC+AGG | 0.622579 | 5_4:-41207289 | Msa0851140:CDS |
| ACGGTTTCAAGATATAAATG+AGG | 0.624622 | 5_4:-41207253 | Msa0851140:CDS |
| GTTGAGATAGGAATGTGGGT+CGG | 0.627338 | 5_4:+41207618 | None:intergenic |
| GAATACACAGAAATGGCACC+CGG | 0.630117 | 5_4:-41207307 | Msa0851140:intron |
| TCGAAGTTGAGATAGGAATG+TGG | 0.632051 | 5_4:+41207613 | None:intergenic |
| TCAATATGAGACCCTTGTAA+CGG | 0.650508 | 5_4:+41204482 | None:intergenic |
| GATTATCTTAACCGTTACAA+GGG | 0.654119 | 5_4:-41204493 | Msa0851140:CDS |
| AGTGGATTACGATGCTACTG+AGG | 0.669358 | 5_4:-41207450 | Msa0851140:CDS |
| GATATAAATGAGGCCTACCA+GGG | 0.671787 | 5_4:-41207243 | Msa0851140:intron |
| AGTGAACGAGAATATGAGAG+TGG | 0.678453 | 5_4:+41207727 | None:intergenic |
| AGATGCTTATGATGTCCTAG+AGG | 0.685240 | 5_4:-41204328 | Msa0851140:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAATATCTATTTAATC+TGG | - | chr5_4:41204865-41204884 | Msa0851140:intron | 10.0% |
| !!! | AATTAGTTTATGATTTGTTT+TGG | - | chr5_4:41204327-41204346 | Msa0851140:three_prime_UTR | 15.0% |
| !!! | TTCTAAAAGTAACTATAATT+AGG | + | chr5_4:41204956-41204975 | None:intergenic | 15.0% |
| !! | TATTTATTCACGAAAAAAAA+AGG | + | chr5_4:41205653-41205672 | None:intergenic | 15.0% |
| !! | AAAATTATAAATCTCTTAGA+AGG | + | chr5_4:41206078-41206097 | None:intergenic | 15.0% |
| !!! | AAGTTTTAAGTTTATATATG+TGG | - | chr5_4:41206321-41206340 | Msa0851140:intron | 15.0% |
| !!! | TAAACTAATGTTTTTTATGT+GGG | - | chr5_4:41206434-41206453 | Msa0851140:intron | 15.0% |
| !! | TTAAGAATTAATAACATAGT+TGG | - | chr5_4:41206481-41206500 | Msa0851140:intron | 15.0% |
| !! | AATAATAAAGAATAGAAAGT+CGG | + | chr5_4:41206736-41206755 | None:intergenic | 15.0% |
| !!! | ATTAAAATTTTGTAACTTCA+GGG | + | chr5_4:41207018-41207037 | None:intergenic | 15.0% |
| !! | CAATATATAAATAAATACCC+TGG | + | chr5_4:41204605-41204624 | None:intergenic | 20.0% |
| !! | AAAAATTCAAACAGCAATAA+AGG | - | chr5_4:41205269-41205288 | Msa0851140:intron | 20.0% |
| !!! | TCTTTTTCTTAAATTACTAC+TGG | + | chr5_4:41205356-41205375 | None:intergenic | 20.0% |
| !! | ACATACATAGAATAAAAGAA+AGG | - | chr5_4:41205553-41205572 | Msa0851140:intron | 20.0% |
| !!! | ATGGTTTTTGCTTTTTTAAA+TGG | - | chr5_4:41205744-41205763 | Msa0851140:intron | 20.0% |
| !! | AAGGTTATAAATCATATCAA+AGG | + | chr5_4:41206059-41206078 | None:intergenic | 20.0% |
| !! | AATATTAACTACACAAAATC+TGG | + | chr5_4:41206384-41206403 | None:intergenic | 20.0% |
| !!! | GTAAACTAATGTTTTTTATG+TGG | - | chr5_4:41206433-41206452 | Msa0851140:intron | 20.0% |
| !! | ACTAAATTAAAATTTCCAAC+AGG | + | chr5_4:41206696-41206715 | None:intergenic | 20.0% |
| !! | TTAGATTATACTAACTTTGT+AGG | + | chr5_4:41206761-41206780 | None:intergenic | 20.0% |
| !! | ATGATTACAATATCATTGTA+AGG | - | chr5_4:41206862-41206881 | Msa0851140:intron | 20.0% |
| !!! | GATTAAAATTTTGTAACTTC+AGG | + | chr5_4:41207019-41207038 | None:intergenic | 20.0% |
| !!! | TTGAAATATTGATAATACGA+AGG | - | chr5_4:41207202-41207221 | Msa0851140:intron | 20.0% |
| ! | TTACGAAATGATTAAGTTTG+TGG | + | chr5_4:41204057-41204076 | None:intergenic | 25.0% |
| ! | GTAATAATTAAGATGAAGGA+GGG | + | chr5_4:41204285-41204304 | None:intergenic | 25.0% |
| ! | AGTAATAATTAAGATGAAGG+AGG | + | chr5_4:41204286-41204305 | None:intergenic | 25.0% |
| ! | ACGAGTAATAATTAAGATGA+AGG | + | chr5_4:41204289-41204308 | None:intergenic | 25.0% |
| !!! | ATGATTTGTTTTGGTTTTTC+AGG | - | chr5_4:41204336-41204355 | Msa0851140:three_prime_UTR | 25.0% |
| ! | TCAGGATTATTACAAGATAT+TGG | - | chr5_4:41204354-41204373 | Msa0851140:three_prime_UTR | 25.0% |
| ! | TTATTACAAGATATTGGAAG+TGG | - | chr5_4:41204360-41204379 | Msa0851140:three_prime_UTR | 25.0% |
| !! | TTTCCTTTCTAATTTCGTTT+TGG | - | chr5_4:41204467-41204486 | Msa0851140:CDS | 25.0% |
| !! | TTCCTTTCTAATTTCGTTTT+GGG | - | chr5_4:41204468-41204487 | Msa0851140:CDS | 25.0% |
| ! | TGTATTCAGATTAATAGCAA+AGG | + | chr5_4:41204508-41204527 | None:intergenic | 25.0% |
| ! | TTAATCTGAATACACAGAAA+TGG | - | chr5_4:41204514-41204533 | Msa0851140:intron | 25.0% |
| ! | ATATAAATAAATACCCTGGT+AGG | + | chr5_4:41204601-41204620 | None:intergenic | 25.0% |
| ! | AGGACAAATTTATACAGAAA+AGG | - | chr5_4:41204930-41204949 | Msa0851140:intron | 25.0% |
| !! | TAGAATTCTCTTTTGCATTA+TGG | - | chr5_4:41204971-41204990 | Msa0851140:intron | 25.0% |
| ! | ATGGTAAAAATTATCTTTGC+TGG | - | chr5_4:41204990-41205009 | Msa0851140:CDS | 25.0% |
| ! | AATTTACCAACATGAAATGT+GGG | - | chr5_4:41205144-41205163 | Msa0851140:intron | 25.0% |
| ! | ACCTAACTGAGATAAAAAAA+CGG | - | chr5_4:41205506-41205525 | Msa0851140:intron | 25.0% |
| ! | ACAAAAATGTTGCATAACAA+AGG | - | chr5_4:41205624-41205643 | Msa0851140:intron | 25.0% |
| ! | TCGTGAATAAATACAATAGA+TGG | - | chr5_4:41205660-41205679 | Msa0851140:intron | 25.0% |
| ! | ATCTTAAGCCATTAAGATTA+AGG | + | chr5_4:41205726-41205745 | None:intergenic | 25.0% |
| ! | TTAATCTTAATGGCTTAAGA+TGG | - | chr5_4:41205725-41205744 | Msa0851140:intron | 25.0% |
| !!! | TTATTGAGTTGAATTAACCA+AGG | - | chr5_4:41205874-41205893 | Msa0851140:intron | 25.0% |
| ! | AATGCATGTAAAATAAAAGG+GGG | + | chr5_4:41206000-41206019 | None:intergenic | 25.0% |
| ! | CAATGCATGTAAAATAAAAG+GGG | + | chr5_4:41206001-41206020 | None:intergenic | 25.0% |
| ! | CCAATGCATGTAAAATAAAA+GGG | + | chr5_4:41206002-41206021 | None:intergenic | 25.0% |
| ! | ACCAATGCATGTAAAATAAA+AGG | + | chr5_4:41206003-41206022 | None:intergenic | 25.0% |
| ! | AGAATTAATAACATAGTTGG+TGG | - | chr5_4:41206484-41206503 | Msa0851140:intron | 25.0% |
| ! | AGTATAATCTAACATGTCTT+TGG | - | chr5_4:41206769-41206788 | Msa0851140:intron | 25.0% |
| ! | TTGGAATATCGATAATTTGA+GGG | + | chr5_4:41206989-41207008 | None:intergenic | 25.0% |
| !! | TTTGGAATATCGATAATTTG+AGG | + | chr5_4:41206990-41207009 | None:intergenic | 25.0% |
| ! | CTCTGATATTACAAACTTAA+TGG | + | chr5_4:41207082-41207101 | None:intergenic | 25.0% |
| ! | ATTAACATTTAGTAGTTCCA+GGG | - | chr5_4:41207173-41207192 | Msa0851140:intron | 25.0% |
| ! | AAAACATCAAATAAGCAGAA+CGG | + | chr5_4:41207298-41207317 | None:intergenic | 25.0% |
| !!! | TCTGTTTTTACTACTGATAA+TGG | + | chr5_4:41207483-41207502 | None:intergenic | 25.0% |
| !! | TGTTTCTGTAAATGAAAACT+TGG | - | chr5_4:41207650-41207669 | Msa0851140:CDS | 25.0% |
| TAATTACATTCGTCTTGCTT+TGG | - | chr5_4:41204414-41204433 | Msa0851140:three_prime_UTR | 30.0% | |
| ATCCCAAAACGAAATTAGAA+AGG | + | chr5_4:41204473-41204492 | None:intergenic | 30.0% | |
| ACGGTTTCAAGATATAAATG+AGG | - | chr5_4:41204575-41204594 | Msa0851140:intron | 30.0% | |
| AAGTACATAACAATCTGTCA+AGG | - | chr5_4:41204757-41204776 | Msa0851140:intron | 30.0% | |
| AGTACATAACAATCTGTCAA+GGG | - | chr5_4:41204758-41204777 | Msa0851140:intron | 30.0% | |
| ! | TAATTTAGGGACTAAGTTGA+TGG | - | chr5_4:41204802-41204821 | Msa0851140:intron | 30.0% |
| ATATCCATATTGTGTTGTCA+AGG | - | chr5_4:41204910-41204929 | Msa0851140:intron | 30.0% | |
| CATAGAGATTGTTATAGTCA+AGG | + | chr5_4:41205064-41205083 | None:intergenic | 30.0% | |
| ! | CACATTTCATGTTGGTAAAT+TGG | + | chr5_4:41205145-41205164 | None:intergenic | 30.0% |
| CAATTTACCAACATGAAATG+TGG | - | chr5_4:41205143-41205162 | Msa0851140:intron | 30.0% | |
| TTTCCAAAATGCAGTGAATT+TGG | - | chr5_4:41205227-41205246 | Msa0851140:intron | 30.0% | |
| ! | TATCCAAATTCACTGCATTT+TGG | + | chr5_4:41205233-41205252 | None:intergenic | 30.0% |
| GAATTTGGATAATAATTGCG+TGG | - | chr5_4:41205242-41205261 | Msa0851140:intron | 30.0% | |
| TTGAATGTAATCACATGTGT+TGG | - | chr5_4:41205381-41205400 | Msa0851140:intron | 30.0% | |
| !!! | CTACAAAGGTACCAAATTTT+GGG | - | chr5_4:41205459-41205478 | Msa0851140:intron | 30.0% |
| !!! | ACCGTTTTTTTATCTCAGTT+AGG | + | chr5_4:41205510-41205529 | None:intergenic | 30.0% |
| AAAATGTTGCATAACAAAGG+TGG | - | chr5_4:41205627-41205646 | Msa0851140:intron | 30.0% | |
| TACGAAGACCTTAATCTTAA+TGG | - | chr5_4:41205715-41205734 | Msa0851140:intron | 30.0% | |
| AAATAAAAGGGGGAGAAAAA+AGG | + | chr5_4:41205990-41206009 | None:intergenic | 30.0% | |
| !!! | CCCTTTTATTTTACATGCAT+TGG | - | chr5_4:41205999-41206018 | Msa0851140:intron | 30.0% |
| ATGTGACATCAAAATTGTAG+TGG | + | chr5_4:41206103-41206122 | None:intergenic | 30.0% | |
| AACTACACAAAATCTGGATA+TGG | + | chr5_4:41206378-41206397 | None:intergenic | 30.0% | |
| AATCATTTGACCAATAGTGA+AGG | - | chr5_4:41206530-41206549 | Msa0851140:intron | 30.0% | |
| !!! | TTTCAAGGTTTTGAGAAGAT+GGG | - | chr5_4:41206559-41206578 | Msa0851140:intron | 30.0% |
| AAGGAATATTTGTCTTCATC+TGG | - | chr5_4:41206881-41206900 | Msa0851140:intron | 30.0% | |
| ACAATTTCAACGACCAATTT+GGG | + | chr5_4:41206946-41206965 | None:intergenic | 30.0% | |
| TACAATTTCAACGACCAATT+TGG | + | chr5_4:41206947-41206966 | None:intergenic | 30.0% | |
| AAATTGGTCGTTGAAATTGT+AGG | - | chr5_4:41206946-41206965 | Msa0851140:intron | 30.0% | |
| ! | TGTAACTTCAGGGATAATTT+TGG | + | chr5_4:41207008-41207027 | None:intergenic | 30.0% |
| GATTAACATTTAGTAGTTCC+AGG | - | chr5_4:41207172-41207191 | Msa0851140:intron | 30.0% | |
| CAATATTTCAAAATGATCCC+TGG | + | chr5_4:41207193-41207212 | None:intergenic | 30.0% | |
| ! | TATTGATAATACGAAGGACT+AGG | - | chr5_4:41207208-41207227 | Msa0851140:intron | 30.0% |
| TACAATTTCAAAGACCAAGT+TGG | - | chr5_4:41207241-41207260 | Msa0851140:intron | 30.0% | |
| ATCAGATTAAGTATCCAACT+TGG | + | chr5_4:41207258-41207277 | None:intergenic | 30.0% | |
| GATTATCTTAACCGTTACAA+GGG | - | chr5_4:41207335-41207354 | Msa0851140:intron | 30.0% | |
| AGTTGCAATATCAGAATTTC+AGG | + | chr5_4:41207694-41207713 | None:intergenic | 30.0% | |
| AATTCTGATATTGCAACTTG+AGG | - | chr5_4:41207696-41207715 | Msa0851140:CDS | 30.0% | |
| AAACACTTGAAAACTAACTG+AGG | + | chr5_4:41207751-41207770 | None:intergenic | 30.0% | |
| !!! | TCAGTTAGTTTTCAAGTGTT+TGG | - | chr5_4:41207750-41207769 | Msa0851140:five_prime_UTR | 30.0% |
| ATGATTAAGTTTGTGGTGAG+TGG | + | chr5_4:41204050-41204069 | None:intergenic | 35.0% | |
| GAAGAAATCGAAGTTGAGAT+AGG | + | chr5_4:41204225-41204244 | None:intergenic | 35.0% | |
| TAAACAGAAAGACCAGGATT+CGG | - | chr5_4:41204545-41204564 | Msa0851140:intron | 35.0% | |
| ATATATTGTGCTCTGTTGCA+TGG | - | chr5_4:41204617-41204636 | Msa0851140:intron | 35.0% | |
| AATCTGTCAAGGGACTAATT+TGG | - | chr5_4:41204768-41204787 | Msa0851140:intron | 35.0% | |
| TGGAGAGAGAGTCATAATTT+AGG | - | chr5_4:41204788-41204807 | Msa0851140:intron | 35.0% | |
| GGAGAGAGAGTCATAATTTA+GGG | - | chr5_4:41204789-41204808 | Msa0851140:intron | 35.0% | |
| TTGTCCTTGACAACACAATA+TGG | + | chr5_4:41204917-41204936 | None:intergenic | 35.0% | |
| TGCTGGAACTATTGTTTAGA+TGG | - | chr5_4:41205007-41205026 | Msa0851140:CDS | 35.0% | |
| ! | TAACAATCTCTATGCTGACT+TGG | - | chr5_4:41205070-41205089 | Msa0851140:intron | 35.0% |
| ! | CGCTTTTGATCAAAGACATT+AGG | + | chr5_4:41205433-41205452 | None:intergenic | 35.0% |
| ! | ATGTCTTTGATCAAAAGCGT+TGG | - | chr5_4:41205434-41205453 | Msa0851140:intron | 35.0% |
| !!! | GCTACAAAGGTACCAAATTT+TGG | - | chr5_4:41205458-41205477 | Msa0851140:intron | 35.0% |
| AGATAAAAAAACGGTTGTCG+TGG | - | chr5_4:41205515-41205534 | Msa0851140:intron | 35.0% | |
| CTTTGTGACGAGAAAAACAA+GGG | - | chr5_4:41205683-41205702 | Msa0851140:intron | 35.0% | |
| AGATTAAGGTCTTCGTACTA+TGG | + | chr5_4:41205712-41205731 | None:intergenic | 35.0% | |
| GATGTTCAATGTTCAAACTC+TGG | + | chr5_4:41205802-41205821 | None:intergenic | 35.0% | |
| GCATCAGAAAGAGTTTGAAA+AGG | + | chr5_4:41205824-41205843 | None:intergenic | 35.0% | |
| GCAAATACCTTAATCCATGA+TGG | - | chr5_4:41205946-41205965 | Msa0851140:intron | 35.0% | |
| AACAATAATGCACTCCATCA+TGG | + | chr5_4:41205963-41205982 | None:intergenic | 35.0% | |
| ! | TTCCTTAATCTTTTGTAGGG+AGG | + | chr5_4:41206186-41206205 | None:intergenic | 35.0% |
| TCCCTACAAAAGATTAAGGA+AGG | - | chr5_4:41206185-41206204 | Msa0851140:intron | 35.0% | |
| ! | CCCTTCCTTAATCTTTTGTA+GGG | + | chr5_4:41206189-41206208 | None:intergenic | 35.0% |
| CCCTACAAAAGATTAAGGAA+GGG | - | chr5_4:41206186-41206205 | Msa0851140:intron | 35.0% | |
| ! | TCCCTTCCTTAATCTTTTGT+AGG | + | chr5_4:41206190-41206209 | None:intergenic | 35.0% |
| CATCTTCTCAAAACCTTGAA+AGG | + | chr5_4:41206560-41206579 | None:intergenic | 35.0% | |
| !!! | CTTTCAAGGTTTTGAGAAGA+TGG | - | chr5_4:41206558-41206577 | Msa0851140:intron | 35.0% |
| !! | TTTTGAGTGATCCAGACAAA+AGG | - | chr5_4:41206805-41206824 | Msa0851140:intron | 35.0% |
| ! | AGGAGAGAGTATGACATAAA+CGG | - | chr5_4:41206825-41206844 | Msa0851140:intron | 35.0% |
| GCATGAGTAAATACCCAAAT+TGG | - | chr5_4:41206930-41206949 | Msa0851140:intron | 35.0% | |
| AATCAAATTCATCCCTCCAT+TGG | - | chr5_4:41207035-41207054 | Msa0851140:intron | 35.0% | |
| CTAATCCCTAAACATACCAA+TGG | + | chr5_4:41207054-41207073 | None:intergenic | 35.0% | |
| !! | GTTTTCATTTTGTTTGTCGC+AGG | - | chr5_4:41207313-41207332 | Msa0851140:intron | 35.0% |
| GGATTATCTTAACCGTTACA+AGG | - | chr5_4:41207334-41207353 | Msa0851140:intron | 35.0% | |
| TCAATATGAGACCCTTGTAA+CGG | + | chr5_4:41207349-41207368 | None:intergenic | 35.0% | |
| AAATTGAATGCTTGATGCCA+AGG | + | chr5_4:41207382-41207401 | None:intergenic | 35.0% | |
| TTGGCATCAAGCATTCAATT+TGG | - | chr5_4:41207381-41207400 | Msa0851140:intron | 35.0% | |
| AAAAATTGTCCAAGAGACAC+TGG | + | chr5_4:41207439-41207458 | None:intergenic | 35.0% | |
| !!! | GGACAATTTTTTGAAGTACC+TGG | - | chr5_4:41207448-41207467 | Msa0851140:CDS | 35.0% |
| AACGAGAATATGAGAGTGGT+CGG | + | chr5_4:41204100-41204119 | None:intergenic | 40.0% | |
| AGTGAACGAGAATATGAGAG+TGG | + | chr5_4:41204104-41204123 | None:intergenic | 40.0% | |
| CGAAGTTGAGATAGGAATGT+GGG | + | chr5_4:41204217-41204236 | None:intergenic | 40.0% | |
| TCGAAGTTGAGATAGGAATG+TGG | + | chr5_4:41204218-41204237 | None:intergenic | 40.0% | |
| ATTAAGATGAAGGAGGGTGA+GGG | + | chr5_4:41204279-41204298 | None:intergenic | 40.0% | |
| AATTAAGATGAAGGAGGGTG+AGG | + | chr5_4:41204280-41204299 | None:intergenic | 40.0% | |
| ! | TCCTGGTCTTTCTGTTTATC+CGG | + | chr5_4:41204543-41204562 | None:intergenic | 40.0% |
| TATATCTTGAAACCGTGACG+TGG | + | chr5_4:41204571-41204590 | None:intergenic | 40.0% | |
| AGATATAAATGAGGCCTACC+AGG | - | chr5_4:41204584-41204603 | Msa0851140:intron | 40.0% | |
| GATATAAATGAGGCCTACCA+GGG | - | chr5_4:41204585-41204604 | Msa0851140:intron | 40.0% | |
| ! | GTGAGTTGAAATCTGAGCAT+CGG | + | chr5_4:41205113-41205132 | None:intergenic | 40.0% |
| ! | GTAATCACATGTGTTGGTGT+CGG | - | chr5_4:41205387-41205406 | Msa0851140:intron | 40.0% |
| !!! | CAAAGGTACCAAATTTTGGG+TGG | - | chr5_4:41205462-41205481 | Msa0851140:intron | 40.0% |
| CGACTTTACCACCCAAAATT+TGG | + | chr5_4:41205473-41205492 | None:intergenic | 40.0% | |
| AGTTTGAGTAGCATCTACTG+AGG | - | chr5_4:41205593-41205612 | Msa0851140:intron | 40.0% | |
| GCTTTGTGACGAGAAAAACA+AGG | - | chr5_4:41205682-41205701 | Msa0851140:intron | 40.0% | |
| TAGCTAAAGCGATTGAGCTA+GGG | + | chr5_4:41205846-41205865 | None:intergenic | 40.0% | |
| ! | ATGCACTCCATCATGGATTA+AGG | + | chr5_4:41205956-41205975 | None:intergenic | 40.0% |
| CTCCTCCCTACAAAAGATTA+AGG | - | chr5_4:41206181-41206200 | Msa0851140:intron | 40.0% | |
| TTAAGGAAGGGAACGAAAAG+AGG | - | chr5_4:41206198-41206217 | Msa0851140:intron | 40.0% | |
| AAGAATAGGGGCTAAAGCTT+GGG | + | chr5_4:41206231-41206250 | None:intergenic | 40.0% | |
| AAAGAATAGGGGCTAAAGCT+TGG | + | chr5_4:41206232-41206251 | None:intergenic | 40.0% | |
| GGGGAGAAAAGAAAGAATAG+GGG | + | chr5_4:41206243-41206262 | None:intergenic | 40.0% | |
| GGGGGAGAAAAGAAAGAATA+GGG | + | chr5_4:41206244-41206263 | None:intergenic | 40.0% | |
| TGGGGGAGAAAAGAAAGAAT+AGG | + | chr5_4:41206245-41206264 | None:intergenic | 40.0% | |
| TATGAGAACGGGTAATCTTG+GGG | + | chr5_4:41206263-41206282 | None:intergenic | 40.0% | |
| GTATGAGAACGGGTAATCTT+GGG | + | chr5_4:41206264-41206283 | None:intergenic | 40.0% | |
| AGTATGAGAACGGGTAATCT+TGG | + | chr5_4:41206265-41206284 | None:intergenic | 40.0% | |
| AAGATTACCCGTTCTCATAC+TGG | - | chr5_4:41206264-41206283 | Msa0851140:intron | 40.0% | |
| ACAACAAGCCAGTATGAGAA+CGG | + | chr5_4:41206275-41206294 | None:intergenic | 40.0% | |
| TGGATATGGTAACAGTCAGT+TGG | + | chr5_4:41206364-41206383 | None:intergenic | 40.0% | |
| GAAAGGACAACCTTCACTAT+TGG | + | chr5_4:41206543-41206562 | None:intergenic | 40.0% | |
| TAGTGAAGGTTGTCCTTTCA+AGG | - | chr5_4:41206544-41206563 | Msa0851140:intron | 40.0% | |
| TTCAAGACAGCAGTCATGAA+AGG | - | chr5_4:41206599-41206618 | Msa0851140:intron | 40.0% | |
| TCAAGACAGCAGTCATGAAA+GGG | - | chr5_4:41206600-41206619 | Msa0851140:intron | 40.0% | |
| ! | TCATACTCTCTCCTTTTGTC+TGG | + | chr5_4:41206819-41206838 | None:intergenic | 40.0% |
| ! | GGAGAGAGTATGACATAAAC+GGG | - | chr5_4:41206826-41206845 | Msa0851140:intron | 40.0% |
| ATCCCTCCATTGGTATGTTT+AGG | - | chr5_4:41207045-41207064 | Msa0851140:intron | 40.0% | |
| TCCCTCCATTGGTATGTTTA+GGG | - | chr5_4:41207046-41207065 | Msa0851140:intron | 40.0% | |
| TCCCTAAACATACCAATGGA+GGG | + | chr5_4:41207050-41207069 | None:intergenic | 40.0% | |
| ATCCCTAAACATACCAATGG+AGG | + | chr5_4:41207051-41207070 | None:intergenic | 40.0% | |
| !! | GGTCTCATATTGACTTGCAA+TGG | - | chr5_4:41207356-41207375 | Msa0851140:intron | 40.0% |
| !! | ATATTGACTTGCAATGGCCT+TGG | - | chr5_4:41207362-41207381 | Msa0851140:intron | 40.0% |
| AGATGCTTATGATGTCCTAG+AGG | - | chr5_4:41207500-41207519 | Msa0851140:intron | 40.0% | |
| ! | AAGTCTGAAGCTATTCCTCT+AGG | + | chr5_4:41207518-41207537 | None:intergenic | 40.0% |
| CAACTTGAGGAGAACAAATG+CGG | - | chr5_4:41207709-41207728 | Msa0851140:exon | 40.0% | |
| ACTCTCCTCAACCATGATGT+GGG | - | chr5_4:41204121-41204140 | Msa0851140:intron | 45.0% | |
| CTCAACCATGATGTGGGAAT+GGG | - | chr5_4:41204127-41204146 | Msa0851140:intron | 45.0% | |
| TTCTTCCCATTCCCACATCA+TGG | + | chr5_4:41204135-41204154 | None:intergenic | 45.0% | |
| TTGAGATAGGAATGTGGGTC+GGG | + | chr5_4:41204212-41204231 | None:intergenic | 45.0% | |
| GTTGAGATAGGAATGTGGGT+CGG | + | chr5_4:41204213-41204232 | None:intergenic | 45.0% | |
| !! | AGTGGATTACGATGCTACTG+AGG | - | chr5_4:41204378-41204397 | Msa0851140:three_prime_UTR | 45.0% |
| GAATACACAGAAATGGCACC+CGG | - | chr5_4:41204521-41204540 | Msa0851140:intron | 45.0% | |
| ! | CCTGGTCTTTCTGTTTATCC+GGG | + | chr5_4:41204542-41204561 | None:intergenic | 45.0% |
| CAATAAAGGCAGCGATGCTT+TGG | - | chr5_4:41205283-41205302 | Msa0851140:intron | 45.0% | |
| !! | CAAAAGCGTTGGTGCTACAA+AGG | - | chr5_4:41205445-41205464 | Msa0851140:intron | 45.0% |
| GTTGTCGTGGATGAGTAGTA+GGG | - | chr5_4:41205528-41205547 | Msa0851140:intron | 45.0% | |
| TGTGACGAGAAAAACAAGGG+AGG | - | chr5_4:41205686-41205705 | Msa0851140:intron | 45.0% | |
| GTAGCTAAAGCGATTGAGCT+AGG | + | chr5_4:41205847-41205866 | None:intergenic | 45.0% | |
| AGCTTCATGTGCTCAATCTG+AGG | + | chr5_4:41205914-41205933 | None:intergenic | 45.0% | |
| CGCTCATCCTTATCAGAGAT+TGG | - | chr5_4:41206026-41206045 | Msa0851140:intron | 45.0% | |
| CATCCTTATCAGAGATTGGC+TGG | - | chr5_4:41206030-41206049 | Msa0851140:intron | 45.0% | |
| CAACCAGCCAATCTCTGATA+AGG | + | chr5_4:41206036-41206055 | None:intergenic | 45.0% | |
| ATGAGAACGGGTAATCTTGG+GGG | + | chr5_4:41206262-41206281 | None:intergenic | 45.0% | |
| CAACAAGCCAGTATGAGAAC+GGG | + | chr5_4:41206274-41206293 | None:intergenic | 45.0% | |
| !! | GTTCTCATACTGGCTTGTTG+TGG | - | chr5_4:41206274-41206293 | Msa0851140:intron | 45.0% |
| !!! | GGTTTTGAGAAGATGGGTTG+TGG | - | chr5_4:41206565-41206584 | Msa0851140:intron | 45.0% |
| CAAGACAGCAGTCATGAAAG+GGG | - | chr5_4:41206601-41206620 | Msa0851140:intron | 45.0% | |
| TCGATAGCAGATCGAACTAG+AGG | - | chr5_4:41207140-41207159 | Msa0851140:intron | 45.0% | |
| CGATAGCAGATCGAACTAGA+GGG | - | chr5_4:41207141-41207160 | Msa0851140:intron | 45.0% | |
| ! | GATGTGGATGTTTGAGATGC+TGG | + | chr5_4:41207417-41207436 | None:intergenic | 45.0% |
| CACTCTCCTCAACCATGATG+TGG | - | chr5_4:41204120-41204139 | Msa0851140:intron | 50.0% | |
| CCATTCCCACATCATGGTTG+AGG | + | chr5_4:41204129-41204148 | None:intergenic | 50.0% | |
| CCTCAACCATGATGTGGGAA+TGG | - | chr5_4:41204126-41204145 | Msa0851140:intron | 50.0% | |
| !!! | AATTTGGTCGGGTTTTGGGG+AGG | + | chr5_4:41204189-41204208 | None:intergenic | 50.0% |
| ! | GGGAATTTGGTCGGGTTTTG+GGG | + | chr5_4:41204192-41204211 | None:intergenic | 50.0% |
| ! | CGGGAATTTGGTCGGGTTTT+GGG | + | chr5_4:41204193-41204212 | None:intergenic | 50.0% |
| ! | TCGGGAATTTGGTCGGGTTT+TGG | + | chr5_4:41204194-41204213 | None:intergenic | 50.0% |
| ATGTGGGTCGGGAATTTGGT+CGG | + | chr5_4:41204201-41204220 | None:intergenic | 50.0% | |
| AGGAATGTGGGTCGGGAATT+TGG | + | chr5_4:41204205-41204224 | None:intergenic | 50.0% | |
| CTCTCCTCTCTCTAAACCCA+AGG | - | chr5_4:41204244-41204263 | Msa0851140:intron | 50.0% | |
| GGAACCTTGGGTTTAGAGAG+AGG | + | chr5_4:41204251-41204270 | None:intergenic | 50.0% | |
| !!! | GTGAGGGTTTTGGGAACCTT+GGG | + | chr5_4:41204263-41204282 | None:intergenic | 50.0% |
| ! | TGAAGGAGGGTGAGGGTTTT+GGG | + | chr5_4:41204272-41204291 | None:intergenic | 50.0% |
| ! | ATGAAGGAGGGTGAGGGTTT+TGG | + | chr5_4:41204273-41204292 | None:intergenic | 50.0% |
| CCCGGATAAACAGAAAGACC+AGG | - | chr5_4:41204539-41204558 | Msa0851140:intron | 50.0% | |
| !! | GCTGACTTGGTTGTGCATCT+TGG | - | chr5_4:41205083-41205102 | Msa0851140:intron | 50.0% |
| GGTTGTCGTGGATGAGTAGT+AGG | - | chr5_4:41205527-41205546 | Msa0851140:intron | 50.0% | |
| AGGCTAGGCATGTACAACCT+TGG | + | chr5_4:41205894-41205913 | None:intergenic | 50.0% | |
| ! | CATGTGCTCAATCTGAGGCT+AGG | + | chr5_4:41205909-41205928 | None:intergenic | 50.0% |
| ! | AAGAGTGTATCATCCCTCCC+TGG | - | chr5_4:41206157-41206176 | Msa0851140:intron | 50.0% |
| ! | CTTTTGTAGGGAGGAGACCA+GGG | + | chr5_4:41206177-41206196 | None:intergenic | 50.0% |
| ! | TCTTTTGTAGGGAGGAGACC+AGG | + | chr5_4:41206178-41206197 | None:intergenic | 50.0% |
| !! | ACTGGCTTGTTGTGGAACAC+TGG | - | chr5_4:41206282-41206301 | Msa0851140:intron | 50.0% |
| CATCCACATCCAGTGTCTCT+TGG | - | chr5_4:41207427-41207446 | Msa0851140:CDS | 50.0% | |
| TGTCCAAGAGACACTGGATG+TGG | + | chr5_4:41207433-41207452 | None:intergenic | 50.0% | |
| !! | TGATAATGGCATGCAGTGCC+AGG | + | chr5_4:41207469-41207488 | None:intergenic | 50.0% |
| TGTGGGTCGGGAATTTGGTC+GGG | + | chr5_4:41204200-41204219 | None:intergenic | 55.0% | |
| !!! | GGTGAGGGTTTTGGGAACCT+TGG | + | chr5_4:41204264-41204283 | None:intergenic | 55.0% |
| GGACGGCCCACATTTCATGT+TGG | + | chr5_4:41205153-41205172 | None:intergenic | 55.0% | |
| AATGTGGGCCGTCCGATGAT+AGG | - | chr5_4:41205159-41205178 | Msa0851140:intron | 55.0% | |
| AGTCCAGCCCGTCCTATCAT+CGG | + | chr5_4:41205174-41205193 | None:intergenic | 55.0% | |
| TTCCTGCATCTGTGCACCTC+GGG | + | chr5_4:41205198-41205217 | None:intergenic | 55.0% | |
| GTTCCTGCATCTGTGCACCT+CGG | + | chr5_4:41205199-41205218 | None:intergenic | 55.0% | |
| AACAGGCAACAGCACACGTC+AGG | + | chr5_4:41206679-41206698 | None:intergenic | 55.0% | |
| ! | TGACGTGTGCTGTTGCCTGT+TGG | - | chr5_4:41206678-41206697 | Msa0851140:intron | 55.0% |
| ACCAGGATTCGGCCACGTCA+CGG | - | chr5_4:41204556-41204575 | Msa0851140:intron | 60.0% | |
| TGGGCCGTCCGATGATAGGA+CGG | - | chr5_4:41205163-41205182 | Msa0851140:intron | 60.0% | |
| CAGCCCGTCCTATCATCGGA+CGG | + | chr5_4:41205170-41205189 | None:intergenic | 60.0% | |
| TGTAGGGAGGAGACCAGGGA+GGG | + | chr5_4:41206173-41206192 | None:intergenic | 60.0% | |
| TTGTAGGGAGGAGACCAGGG+AGG | + | chr5_4:41206174-41206193 | None:intergenic | 60.0% | |
| AGGCAACAGCACACGTCAGG+AGG | + | chr5_4:41206676-41206695 | None:intergenic | 60.0% | |
| ACCGTGACGTGGCCGAATCC+TGG | + | chr5_4:41204560-41204579 | None:intergenic | 65.0% | |
| GGGCCGTCCGATGATAGGAC+GGG | - | chr5_4:41205164-41205183 | Msa0851140:intron | 65.0% | |
| CGTCCGATGATAGGACGGGC+TGG | - | chr5_4:41205168-41205187 | Msa0851140:intron | 65.0% | |
| TGCCCGAGGTGCACAGATGC+AGG | - | chr5_4:41205193-41205212 | Msa0851140:intron | 65.0% | |
| !! | AGGACGGGCTGGACTGCCCG+AGG | - | chr5_4:41205179-41205198 | Msa0851140:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 41204040 | 41207810 | 41204040 | ID=Msa0851140;Name=Msa0851140 |
| chr5_4 | mRNA | 41204040 | 41207810 | 41204040 | ID=Msa0851140-mRNA-1;Parent=Msa0851140;Name=Msa0851140-mRNA-1;_AED=0.33;_eAED=0.33;_QI=94|1|1|1|0.4|0.5|6|234|143 |
| chr5_4 | exon | 41204040 | 41204084 | 41204040 | ID=Msa0851140-mRNA-1:exon:13021;Parent=Msa0851140-mRNA-1 |
| chr5_4 | exon | 41204255 | 41204515 | 41204255 | ID=Msa0851140-mRNA-1:exon:13020;Parent=Msa0851140-mRNA-1 |
| chr5_4 | exon | 41204972 | 41205045 | 41204972 | ID=Msa0851140-mRNA-1:exon:13019;Parent=Msa0851140-mRNA-1 |
| chr5_4 | exon | 41207244 | 41207319 | 41207244 | ID=Msa0851140-mRNA-1:exon:13018;Parent=Msa0851140-mRNA-1 |
| chr5_4 | exon | 41207415 | 41207492 | 41207415 | ID=Msa0851140-mRNA-1:exon:13017;Parent=Msa0851140-mRNA-1 |
| chr5_4 | exon | 41207585 | 41207810 | 41207585 | ID=Msa0851140-mRNA-1:exon:13016;Parent=Msa0851140-mRNA-1 |
| chr5_4 | five_prime_UTR | 41207717 | 41207810 | 41207717 | ID=Msa0851140-mRNA-1:five_prime_utr;Parent=Msa0851140-mRNA-1 |
| chr5_4 | CDS | 41207585 | 41207716 | 41207585 | ID=Msa0851140-mRNA-1:cds;Parent=Msa0851140-mRNA-1 |
| chr5_4 | CDS | 41207415 | 41207492 | 41207415 | ID=Msa0851140-mRNA-1:cds;Parent=Msa0851140-mRNA-1 |
| chr5_4 | CDS | 41207244 | 41207319 | 41207244 | ID=Msa0851140-mRNA-1:cds;Parent=Msa0851140-mRNA-1 |
| chr5_4 | CDS | 41204972 | 41205045 | 41204972 | ID=Msa0851140-mRNA-1:cds;Parent=Msa0851140-mRNA-1 |
| chr5_4 | CDS | 41204444 | 41204515 | 41204444 | ID=Msa0851140-mRNA-1:cds;Parent=Msa0851140-mRNA-1 |
| chr5_4 | three_prime_UTR | 41204255 | 41204443 | 41204255 | ID=Msa0851140-mRNA-1:three_prime_utr;Parent=Msa0851140-mRNA-1 |
| chr5_4 | three_prime_UTR | 41204040 | 41204084 | 41204040 | ID=Msa0851140-mRNA-1:three_prime_utr;Parent=Msa0851140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
