AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0673620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0673620 MtrunA17_Chr4g0014341 95.210 334 13 2 1 334 1 331 0.0 632
Msa0673620 MtrunA17_Chr4g0065691 32.301 226 137 4 121 334 20 241 1.02e-23 98.6
Msa0673620 MtrunA17_Chr2g0287701 34.703 219 126 5 127 333 26 239 3.66e-20 88.6
Msa0673620 MtrunA17_Chr2g0291431 33.333 135 84 3 152 282 106 238 1.16e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0673620 AT1G22850.1 72.667 300 69 3 30 324 36 327 2.99e-135 388
Msa0673620 AT1G22850.2 71.852 270 63 3 30 294 36 297 2.94e-127 366
Msa0673620 AT1G03260.1 31.308 214 142 2 121 333 22 231 4.56e-24 99.8
Msa0673620 AT5G19070.1 34.951 206 130 4 127 330 26 229 1.17e-19 87.8
Msa0673620 AT5G19070.2 39.873 158 92 3 127 282 26 182 2.78e-17 80.1
Msa0673620 AT2G02370.2 24.576 236 161 8 107 334 61 287 6.08e-13 68.9
Msa0673620 AT2G02370.1 24.576 236 161 8 107 334 61 287 6.08e-13 68.9
Msa0673620 AT2G02370.3 24.576 236 161 8 107 334 61 287 6.08e-13 68.9
Msa0673620 AT4G22850.1 28.767 219 144 5 123 332 72 287 8.67e-13 68.2

Find 112 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGGGGAATTATTTATA+TGG 0.194134 4_4:+20216943 Msa0673620:CDS
GACAAAGCAATTGGAGAAAA+TGG 0.205274 4_4:+20216874 Msa0673620:CDS
GGATGATGGTGCTGCTTTAA+AGG 0.228065 4_4:+20214062 Msa0673620:CDS
GGATAATCGATTATTATTAT+TGG 0.253963 4_4:-20213830 None:intergenic
TGCTTTAAAGGGTACCCTTT+TGG 0.267432 4_4:+20214074 Msa0673620:CDS
CTTATTGATGAGAATCTTGT+AGG 0.268397 4_4:+20221372 Msa0673620:three_prime_UTR
ATTGCCAATACTTAAAGTTT+TGG 0.279711 4_4:+20221522 Msa0673620:three_prime_UTR
CGGTTGCCTCTAGTCTCTAC+TGG 0.298470 4_4:-20221211 None:intergenic
TATGTTAGTGCTGGTGCTTT+TGG 0.309524 4_4:+20217544 Msa0673620:CDS
CAATGGGAATCAATAAATCT+AGG 0.327035 4_4:+20221691 Msa0673620:three_prime_UTR
AAATAATTCCCCAAAGAAAA+TGG 0.331770 4_4:-20216937 None:intergenic
GACGCTTGGGCTGGGACTCT+TGG 0.334788 4_4:+20220328 Msa0673620:CDS
TGATTCAAGAAAGTATTAAT+AGG 0.339145 4_4:-20214159 None:intergenic
GGCAGGTCTATGATCGGATT+AGG 0.367498 4_4:+20221253 Msa0673620:three_prime_UTR
CTTGCTATTGACAAAGCAAT+TGG 0.371123 4_4:+20216865 Msa0673620:CDS
CTAACATAAGCCCATGTTCC+TGG 0.376453 4_4:-20217529 None:intergenic
TAATTGTCATGCAGTTGGTT+GGG 0.378900 4_4:+20217499 Msa0673620:intron
CTTTGGGGAATTATTTATAT+GGG 0.384365 4_4:+20216944 Msa0673620:CDS
TCCGACATTGTTTCAATTCA+AGG 0.386160 4_4:-20221421 None:intergenic
TCAGCTGCTGACGCTTGGGC+TGG 0.387503 4_4:+20220319 Msa0673620:CDS
CAGCTGCTGACGCTTGGGCT+GGG 0.387875 4_4:+20220320 Msa0673620:CDS
AGTTGGTTGGGGATGCTTCC+AGG 0.390286 4_4:+20217511 Msa0673620:intron
TAAGTTTCTTCCGTATGTAC+TGG 0.393619 4_4:+20216978 Msa0673620:CDS
CCATCCAAAACTTTAAGTAT+TGG 0.396629 4_4:-20221526 None:intergenic
AACAATCAGCTGCTGACGCT+TGG 0.399885 4_4:+20220314 Msa0673620:CDS
CAATTCTCTGGCTTCATTGA+AGG 0.403169 4_4:+20214180 Msa0673620:CDS
TGGGGATGCTTCCAGGAACA+TGG 0.413941 4_4:+20217518 Msa0673620:CDS
TGAGCGTATTCTAAAATTAG+TGG 0.427699 4_4:+20216825 Msa0673620:CDS
AAGAAAGAAGGTGGAATGAA+TGG 0.434244 4_4:-20213707 None:intergenic
CAAGCAAAACACCAGCCAAA+AGG 0.436537 4_4:-20214089 None:intergenic
AAGTCCGGCTGACATGGTTA+AGG 0.437784 4_4:-20216049 None:intergenic
ACTTTCTTGAATCAATTCTC+TGG 0.437926 4_4:+20214168 Msa0673620:CDS
ACAATCAGCTGCTGACGCTT+GGG 0.440714 4_4:+20220315 Msa0673620:CDS
TTGATTCCCATTGTTGTGGA+TGG 0.444183 4_4:-20221681 None:intergenic
AACTAGTGCAAATGGAATCT+AGG 0.446140 4_4:-20221591 None:intergenic
ATCTGAGAAAGAAGAGGAAG+AGG 0.449000 4_4:+20214041 Msa0673620:CDS
GCAGGTCTATGATCGGATTA+GGG 0.450975 4_4:+20221254 Msa0673620:three_prime_UTR
TGTTAAAGAACTAGTGCAAA+TGG 0.451818 4_4:-20221599 None:intergenic
GATGATGGTGCTGCTTTAAA+GGG 0.451883 4_4:+20214063 Msa0673620:CDS
AAGAATAAGAAGAAGAAAAG+AGG 0.456198 4_4:+20214015 Msa0673620:CDS
TTGTTTGTAGCTGTTTATGC+TGG 0.458819 4_4:+20215802 Msa0673620:CDS
CGACACACATTTGCGAATGA+AGG 0.468877 4_4:+20221232 Msa0673620:three_prime_UTR
CCCAAAGAAAATGGCAGCAA+AGG 0.469203 4_4:-20216928 None:intergenic
AGACTATGATGGTGCCGGTA+AGG 0.470757 4_4:-20216083 None:intergenic
GCAAAGGGCTCAAACGAAGC+AGG 0.470966 4_4:-20216912 None:intergenic
AATTGGAGAAAATGGCTTCA+AGG 0.475664 4_4:+20216882 Msa0673620:CDS
AGTCCGGCTGACATGGTTAA+GGG 0.477591 4_4:-20216048 None:intergenic
TGTAGCTGTTTATGCTGGAT+TGG 0.479159 4_4:+20215807 Msa0673620:CDS
GACTATGATGGTGCCGGTAA+GGG 0.479298 4_4:-20216082 None:intergenic
GATGTGGTGTCTTAATCTCT+TGG 0.481882 4_4:+20221550 Msa0673620:three_prime_UTR
TGAGAGAGAATCAAGGAAAG+TGG 0.483444 4_4:+20221315 Msa0673620:three_prime_UTR
ACTTACCCATCCACAACAAT+GGG 0.485719 4_4:+20221675 Msa0673620:three_prime_UTR
TGAGCAGGTTATGGTTCAGC+TGG 0.486738 4_4:+20215772 Msa0673620:intron
GAATCTGAACTTAGTTCACT+TGG 0.487591 4_4:+20220287 Msa0673620:CDS
CCGACATTGTTTCAATTCAA+GGG 0.490965 4_4:-20221420 None:intergenic
TAAGAATATTGTAATTTACA+AGG 0.505788 4_4:-20221353 None:intergenic
AAGCAAAACACCAGCCAAAA+GGG 0.506033 4_4:-20214088 None:intergenic
ATAATTGTCATGCAGTTGGT+TGG 0.507926 4_4:+20217498 Msa0673620:intron
AAAGAAGAGGAAGAGGATGA+TGG 0.508918 4_4:+20214048 Msa0673620:CDS
AGCTGTTTATGCTGGATTGG+AGG 0.512844 4_4:+20215810 Msa0673620:CDS
CCAAAGAAAATGGCAGCAAA+GGG 0.517038 4_4:-20216927 None:intergenic
GACATGGTTAAGGGAATGGC+AGG 0.519492 4_4:-20216039 None:intergenic
TCAGTGTTATTGATTCTACT+AGG 0.521966 4_4:-20213925 None:intergenic
GGGGATGCTTCCAGGAACAT+GGG 0.521976 4_4:+20217519 Msa0673620:CDS
TAATTTACAAGGGGAATGCT+AGG 0.529214 4_4:-20221342 None:intergenic
CGTATTCTAAAATTAGTGGA+AGG 0.529552 4_4:+20216829 Msa0673620:CDS
TACTTACCCATCCACAACAA+TGG 0.530494 4_4:+20221674 Msa0673620:three_prime_UTR
AATTGTCATGCAGTTGGTTG+GGG 0.530827 4_4:+20217500 Msa0673620:intron
ATTCAAGGGAGCAACACAAA+AGG 0.535257 4_4:-20221406 None:intergenic
TTTATTGATTCCCATTGTTG+TGG 0.536217 4_4:-20221685 None:intergenic
AGAATCAGTTACAAGAAAGA+AGG 0.536879 4_4:-20213719 None:intergenic
AATGGGAATCAATAAATCTA+GGG 0.538341 4_4:+20221692 Msa0673620:three_prime_UTR
GGCTGACATGGTTAAGGGAA+TGG 0.542883 4_4:-20216043 None:intergenic
AAGTTTCTTCCGTATGTACT+GGG 0.545043 4_4:+20216979 Msa0673620:CDS
TGATAGATGAGAGAGAATCA+AGG 0.545672 4_4:+20221308 Msa0673620:three_prime_UTR
AAGAATATTGTAATTTACAA+GGG 0.546641 4_4:-20221352 None:intergenic
TCTGAACTTAGTTCACTTGG+AGG 0.551989 4_4:+20220290 Msa0673620:CDS
TGATTCCCATTGTTGTGGAT+GGG 0.555740 4_4:-20221680 None:intergenic
CCATACCTTCCCAGTACATA+CGG 0.559758 4_4:-20216988 None:intergenic
TTCTTCCGTATGTACTGGGA+AGG 0.568097 4_4:+20216983 Msa0673620:CDS
AGGTGAATCTGAGAAAGAAG+AGG 0.574145 4_4:+20214035 Msa0673620:CDS
GGTTGCCTCTAGTCTCTACT+GGG 0.577739 4_4:-20221210 None:intergenic
ATCAGTTACAAGAAAGAAGG+TGG 0.579942 4_4:-20213716 None:intergenic
GTTTGTTTGAGTGATGAATG+TGG 0.581191 4_4:-20213892 None:intergenic
ACATGGGCTTATGTTAGTGC+TGG 0.583860 4_4:+20217535 Msa0673620:CDS
AGAATATTGTAATTTACAAG+GGG 0.585844 4_4:-20221351 None:intergenic
GAAGATGATAGACATGGTGG+TGG 0.585967 4_4:-20213790 None:intergenic
CCCTTGAATTGAAACAATGT+CGG 0.593472 4_4:+20221420 Msa0673620:three_prime_UTR
ACACATTTGCGAATGAAGGC+AGG 0.594450 4_4:+20221236 Msa0673620:three_prime_UTR
GATAGAGACTATGATGGTGC+CGG 0.594918 4_4:-20216088 None:intergenic
GTGGTGTCTTAATCTCTTGG+TGG 0.601445 4_4:+20221553 Msa0673620:three_prime_UTR
ATTCCCTTAACCATGTCAGC+CGG 0.606649 4_4:+20216045 Msa0673620:CDS
TAGTTCTTTAACATGGTCAG+AGG 0.615298 4_4:+20221609 Msa0673620:three_prime_UTR
AGGGAATGGCAGGAATTGCA+AGG 0.618635 4_4:-20216029 None:intergenic
CTTCATTCGCAAATGTGTGT+CGG 0.619862 4_4:-20221231 None:intergenic
TAAATAATACATAAGTTCTG+AGG 0.625386 4_4:-20221718 None:intergenic
CAAAGGGCTCAAACGAAGCA+GGG 0.626668 4_4:-20216911 None:intergenic
TTTGCACTAGTTCTTTAACA+TGG 0.627899 4_4:+20221602 Msa0673620:three_prime_UTR
TGTGGATGGGTAAGTACAAG+AGG 0.629249 4_4:-20221667 None:intergenic
AATGAAGGCAGGTCTATGAT+CGG 0.629372 4_4:+20221247 Msa0673620:three_prime_UTR
AGTTCTTTAACATGGTCAGA+GGG 0.629717 4_4:+20221610 Msa0673620:three_prime_UTR
ATATGTCACAAAGCTTGCAA+AGG 0.632352 4_4:+20220370 Msa0673620:CDS
GTATTCTAAAATTAGTGGAA+GGG 0.647848 4_4:+20216830 Msa0673620:CDS
CGGAACTCAAGTGCGAGTGG+TGG 0.651783 4_4:+20221440 Msa0673620:three_prime_UTR
TGTCGGAACTCAAGTGCGAG+TGG 0.660704 4_4:+20221437 Msa0673620:three_prime_UTR
TCCACTGATAGAGACTATGA+TGG 0.660814 4_4:-20216094 None:intergenic
ACCATCATAGTCTCTATCAG+TGG 0.667003 4_4:+20216093 Msa0673620:CDS
AATCTAGGAACTAATAACAA+CGG 0.675492 4_4:-20221576 None:intergenic
CTAGACCCAGTAGAGACTAG+AGG 0.675993 4_4:+20221205 Msa0673620:exon
ATATGTAGCAGCTAATGCAG+TGG 0.688625 4_4:-20220351 None:intergenic
TATGAAGAAGATGATAGACA+TGG 0.704292 4_4:-20213796 None:intergenic
GAAGAAGATGATAGACATGG+TGG 0.711512 4_4:-20213793 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTATTTTTAA+AGG + chr4_4:20216249-20216268 Msa0673620:intron 0.0%
!! TTCTTTGTAATAAAAAAAAA+AGG - chr4_4:20217253-20217272 None:intergenic 10.0%
!!! TTTTTTTTTTATTACAAAGA+AGG + chr4_4:20217252-20217271 Msa0673620:intron 10.0%
!! TATTTGTAATATTCAATAAT+AGG + chr4_4:20220434-20220453 Msa0673620:intron 10.0%
!!! CTTATTTTCATAAACTTTTT+AGG + chr4_4:20215073-20215092 Msa0673620:intron 15.0%
!!! GATCTCTTATTTATATAAAT+AGG + chr4_4:20215137-20215156 Msa0673620:intron 15.0%
!! GAACAATAAAAAATATTTGA+AGG - chr4_4:20216159-20216178 None:intergenic 15.0%
!!! TATTTAAGACATCTAAAATT+TGG + chr4_4:20216326-20216345 Msa0673620:intron 15.0%
!!! ATAATATTTTAAGTCTTTGT+AGG + chr4_4:20216759-20216778 Msa0673620:intron 15.0%
!! TAAAAAAAATTATATTTCCC+AGG + chr4_4:20217150-20217169 Msa0673620:intron 15.0%
!! ATTCGAAGTTAAAAATAAAT+TGG - chr4_4:20217439-20217458 None:intergenic 15.0%
!!! AATTTATTTTTAACTTCGAA+TGG + chr4_4:20217438-20217457 Msa0673620:intron 15.0%
!!! TAAAAAGAAATTCTTTTATG+AGG + chr4_4:20219915-20219934 Msa0673620:intron 15.0%
!!! AAAAAGAAATTCTTTTATGA+GGG + chr4_4:20219916-20219935 Msa0673620:intron 15.0%
!! TAAATACATGTTCTTTAATT+AGG - chr4_4:20220416-20220435 None:intergenic 15.0%
!! GAAGAAATTAAGAAAAATTA+AGG - chr4_4:20220715-20220734 None:intergenic 15.0%
!! TTAATGTTGAAATTTATTGT+TGG + chr4_4:20221064-20221083 Msa0673620:intron 15.0%
!! AAGAATATTGTAATTTACAA+GGG - chr4_4:20221355-20221374 None:intergenic 15.0%
!! TAAGAATATTGTAATTTACA+AGG - chr4_4:20221356-20221375 None:intergenic 15.0%
!! GGATAATCGATTATTATTAT+TGG - chr4_4:20213833-20213852 None:intergenic 20.0%
!!! TGATTCAAGAAAGTATTAAT+AGG - chr4_4:20214162-20214181 None:intergenic 20.0%
!! ATTTATAAGATAAACGCTTA+TGG + chr4_4:20214351-20214370 Msa0673620:intron 20.0%
!! TAGAAATAGCTTATAGATAA+TGG - chr4_4:20214383-20214402 None:intergenic 20.0%
!!! TAAAAAAGTTGGTAGAAAAT+AGG + chr4_4:20214782-20214801 Msa0673620:intron 20.0%
!! TTACATGAATGCATATATAA+AGG + chr4_4:20215296-20215315 Msa0673620:intron 20.0%
!! TACATGAATGCATATATAAA+GGG + chr4_4:20215297-20215316 Msa0673620:intron 20.0%
!!! TCTGATTTTTTTTAGAATCA+CGG + chr4_4:20215325-20215344 Msa0673620:intron 20.0%
!! TAAATAAACCAAAGTTAGTT+TGG - chr4_4:20215995-20216014 None:intergenic 20.0%
!!! TATATGAATTTTGCATATTC+TGG - chr4_4:20216186-20216205 None:intergenic 20.0%
!! AACAAGTATTTATAAGTGAT+TGG + chr4_4:20216361-20216380 Msa0673620:intron 20.0%
!!! AATAAGTTGAAAACAGTTTA+TGG + chr4_4:20216569-20216588 Msa0673620:intron 20.0%
!! AAACAATTTCAAGATTCAAA+AGG - chr4_4:20217057-20217076 None:intergenic 20.0%
!! AAATTACATTACTTGGAAAT+TGG + chr4_4:20217086-20217105 Msa0673620:intron 20.0%
!! CAGTAATATTTACAAAGAAA+CGG - chr4_4:20217783-20217802 None:intergenic 20.0%
!! ATTGAAATTGTGTTTATAAG+TGG + chr4_4:20218095-20218114 Msa0673620:intron 20.0%
!!! ATCTACTATGTAATTCTTTT+GGG - chr4_4:20218369-20218388 None:intergenic 20.0%
!!! AATCTACTATGTAATTCTTT+TGG - chr4_4:20218370-20218389 None:intergenic 20.0%
!!! ATAATCAAATCCTTTTTAAG+AGG + chr4_4:20219038-20219057 Msa0673620:intron 20.0%
!! CATTTAGTAAATTTCAAAGT+TGG + chr4_4:20219228-20219247 Msa0673620:intron 20.0%
!! ATATCATAGAATTCTGTTAT+AGG + chr4_4:20219877-20219896 Msa0673620:intron 20.0%
!! ACATTATCTAATCAACTAAT+TGG - chr4_4:20220541-20220560 None:intergenic 20.0%
!! ATAGTTATATCAAGAGAATA+TGG - chr4_4:20220676-20220695 None:intergenic 20.0%
!! AGAATATTGTAATTTACAAG+GGG - chr4_4:20221354-20221373 None:intergenic 20.0%
! ACATTTGTAAGAAGAAAAAG+CGG - chr4_4:20213857-20213876 None:intergenic 25.0%
!!! TCATCATCATTTTCACTTTT+GGG - chr4_4:20213979-20213998 None:intergenic 25.0%
!! ATCATCATCATTTTCACTTT+TGG - chr4_4:20213980-20213999 None:intergenic 25.0%
! AAGAATAAGAAGAAGAAAAG+AGG + chr4_4:20214015-20214034 Msa0673620:CDS 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr4_4:20214921-20214940 Msa0673620:intron 25.0%
! AATAAGCTAAAAACAGCTTA+TGG - chr4_4:20215059-20215078 None:intergenic 25.0%
! ATCACTTAAAAGTCTAATGT+GGG + chr4_4:20215434-20215453 Msa0673620:intron 25.0%
!! ATTTTCTCTATCCATTCTTT+TGG + chr4_4:20215749-20215768 Msa0673620:intron 25.0%
! ACAACTAATGTAACATTTGA+AGG + chr4_4:20215911-20215930 Msa0673620:intron 25.0%
! TAGATGTCTTAAATATTGAC+AGG - chr4_4:20216321-20216340 None:intergenic 25.0%
!!! ATATTTTAAGTCTTTGTAGG+TGG + chr4_4:20216762-20216781 Msa0673620:intron 25.0%
!!! GTATTCTAAAATTAGTGGAA+GGG + chr4_4:20216830-20216849 Msa0673620:CDS 25.0%
! AAATAATTCCCCAAAGAAAA+TGG - chr4_4:20216940-20216959 None:intergenic 25.0%
!! TCTTTGGGGAATTATTTATA+TGG + chr4_4:20216943-20216962 Msa0673620:CDS 25.0%
!! CTTTGGGGAATTATTTATAT+GGG + chr4_4:20216944-20216963 Msa0673620:CDS 25.0%
! TGAATCTTGAAATTGTTTCA+AGG + chr4_4:20217059-20217078 Msa0673620:intron 25.0%
!! TTTTTACCAAATACATGAGT+AGG - chr4_4:20217136-20217155 None:intergenic 25.0%
!!! CAAATTTTGAAAACATTCCT+GGG - chr4_4:20217170-20217189 None:intergenic 25.0%
!!! TTTTCAAAATTTGGTAATCG+AGG + chr4_4:20217177-20217196 Msa0673620:intron 25.0%
! AAAAAAAAAAGGCGAAACTT+TGG - chr4_4:20217242-20217261 None:intergenic 25.0%
!! ATTAGTTTCTATCAAACACA+TGG + chr4_4:20217944-20217963 Msa0673620:intron 25.0%
!! ACTAAAATCAACGTTTTATC+TGG - chr4_4:20218001-20218020 None:intergenic 25.0%
! TGTATAATGTATGTCTATGT+TGG + chr4_4:20218023-20218042 Msa0673620:intron 25.0%
! AAATTGTGTTTATAAGTGGT+GGG + chr4_4:20218099-20218118 Msa0673620:intron 25.0%
!!! GCTCAATTCAAATTTTAAGA+TGG + chr4_4:20218163-20218182 Msa0673620:intron 25.0%
! AGCTGAAAATGATTTATAAG+TGG + chr4_4:20218292-20218311 Msa0673620:intron 25.0%
! TGAAAATGATTTATAAGTGG+TGG + chr4_4:20218295-20218314 Msa0673620:intron 25.0%
! GAAAATGATTTATAAGTGGT+GGG + chr4_4:20218296-20218315 Msa0673620:intron 25.0%
! ATAGTAGATTGATGAGTTTA+TGG + chr4_4:20218380-20218399 Msa0673620:intron 25.0%
! TAATTTGACCAAGAATTGTT+TGG + chr4_4:20218524-20218543 Msa0673620:intron 25.0%
!!! ATATAGATGACTGTTTTTTG+TGG + chr4_4:20218657-20218676 Msa0673620:intron 25.0%
!!! ATGCGTTAGTTTTTAGTAAT+TGG + chr4_4:20218761-20218780 Msa0673620:intron 25.0%
!!! AATGAGGATTTCTAAAATTC+TGG + chr4_4:20219253-20219272 Msa0673620:intron 25.0%
! TTGGATATGCATTAAAAACT+GGG - chr4_4:20219413-20219432 None:intergenic 25.0%
! TTTGGATATGCATTAAAAAC+TGG - chr4_4:20219414-20219433 None:intergenic 25.0%
! TACAAAAATGCTTGATCAAT+TGG + chr4_4:20219565-20219584 Msa0673620:intron 25.0%
! AATAAAACATTCTAAACCTG+GGG - chr4_4:20219751-20219770 None:intergenic 25.0%
! CAATAAAACATTCTAAACCT+GGG - chr4_4:20219752-20219771 None:intergenic 25.0%
! ACAATAAAACATTCTAAACC+TGG - chr4_4:20219753-20219772 None:intergenic 25.0%
! AAGCATCAGTTATATTAAAG+AGG - chr4_4:20220250-20220269 None:intergenic 25.0%
! TTAATTAGGATATGGAAAAC+AGG - chr4_4:20220402-20220421 None:intergenic 25.0%
! CATGTTCTTTAATTAGGATA+TGG - chr4_4:20220410-20220429 None:intergenic 25.0%
! TAGATAATGTTTCTTTGTCT+TGG + chr4_4:20220551-20220570 Msa0673620:intron 25.0%
!!! AGAACATTGATTCATAGAAT+TGG + chr4_4:20220597-20220616 Msa0673620:intron 25.0%
!! ATTGCCAATACTTAAAGTTT+TGG + chr4_4:20221522-20221541 Msa0673620:three_prime_UTR 25.0%
! AATCTAGGAACTAATAACAA+CGG - chr4_4:20221579-20221598 None:intergenic 25.0%
! AATGGGAATCAATAAATCTA+GGG + chr4_4:20221692-20221711 Msa0673620:three_prime_UTR 25.0%
AGAATCAGTTACAAGAAAGA+AGG - chr4_4:20213722-20213741 None:intergenic 30.0%
TATGAAGAAGATGATAGACA+TGG - chr4_4:20213799-20213818 None:intergenic 30.0%
!!! GATTCTACTAGGTTGTTTTT+TGG - chr4_4:20213917-20213936 None:intergenic 30.0%
!! TCAGTGTTATTGATTCTACT+AGG - chr4_4:20213928-20213947 None:intergenic 30.0%
!! ACAAACGTTTTAAACGAGAT+GGG - chr4_4:20213951-20213970 None:intergenic 30.0%
!! AACAAACGTTTTAAACGAGA+TGG - chr4_4:20213952-20213971 None:intergenic 30.0%
ACTTTCTTGAATCAATTCTC+TGG + chr4_4:20214168-20214187 Msa0673620:CDS 30.0%
CAAATTTCAATAACCTCTGT+AGG - chr4_4:20214448-20214467 None:intergenic 30.0%
AGCACGTATAGTAAAAAAGT+TGG + chr4_4:20214771-20214790 Msa0673620:intron 30.0%
AAAATAGGCTTAGATGGTTT+GGG + chr4_4:20214797-20214816 Msa0673620:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG - chr4_4:20214904-20214923 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr4_4:20214926-20214945 None:intergenic 30.0%
GATCCAAATATGGTTTATGA+TGG + chr4_4:20214955-20214974 Msa0673620:intron 30.0%
GTTCCATCATAAACCATATT+TGG - chr4_4:20214961-20214980 None:intergenic 30.0%
GAATAAGGTTACATTTGGAT+TGG - chr4_4:20215261-20215280 None:intergenic 30.0%
TCCAAATGTAACCTTATTCA+AGG + chr4_4:20215262-20215281 Msa0673620:intron 30.0%
CCAAATGTAACCTTATTCAA+GGG + chr4_4:20215263-20215282 Msa0673620:intron 30.0%
ATTCATCAAACCCTTGAATA+AGG - chr4_4:20215276-20215295 None:intergenic 30.0%
CATCACTTAAAAGTCTAATG+TGG + chr4_4:20215433-20215452 Msa0673620:intron 30.0%
TCACTTAAAAGTCTAATGTG+GGG + chr4_4:20215435-20215454 Msa0673620:intron 30.0%
TACACTTGAAGAGATAACAA+GGG - chr4_4:20215657-20215676 None:intergenic 30.0%
AGAGAAAATTAGATGATGTG+TGG - chr4_4:20215738-20215757 None:intergenic 30.0%
! GTGAAACAGTGTTGAAAATA+AGG - chr4_4:20215858-20215877 None:intergenic 30.0%
GTAATGTTCCAAACTAACTT+TGG + chr4_4:20215984-20216003 Msa0673620:intron 30.0%
AGTATTTATAAGTGATTGGC+TGG + chr4_4:20216365-20216384 Msa0673620:intron 30.0%
CTGGACTATTTAACATCATA+TGG + chr4_4:20216384-20216403 Msa0673620:intron 30.0%
TTAAGCTAGTTATCCAAACA+AGG - chr4_4:20216410-20216429 None:intergenic 30.0%
!! CTTATTTTCATAAGCTCTCT+AGG - chr4_4:20216555-20216574 None:intergenic 30.0%
AAACATTTGTGAGACTGTTT+GGG - chr4_4:20216625-20216644 None:intergenic 30.0%
TAAACATTTGTGAGACTGTT+TGG - chr4_4:20216626-20216645 None:intergenic 30.0%
TCAATCCAAACAGACTTAAA+TGG + chr4_4:20216670-20216689 Msa0673620:intron 30.0%
TCATTCCATTTAAGTCTGTT+TGG - chr4_4:20216678-20216697 None:intergenic 30.0%
CACGTTTAGTATCTATTAAC+AGG - chr4_4:20216724-20216743 None:intergenic 30.0%
!! TGAGCGTATTCTAAAATTAG+TGG + chr4_4:20216825-20216844 Msa0673620:CDS 30.0%
!! CGTATTCTAAAATTAGTGGA+AGG + chr4_4:20216829-20216848 Msa0673620:CDS 30.0%
CAATGAAAATCAGTACGAAT+CGG - chr4_4:20217033-20217052 None:intergenic 30.0%
AGGCTTGAAATTACATTACT+TGG + chr4_4:20217079-20217098 Msa0673620:intron 30.0%
AACATTCCTACTCATGTATT+TGG + chr4_4:20217127-20217146 Msa0673620:intron 30.0%
!! CCAAATTTTGAAAACATTCC+TGG - chr4_4:20217171-20217190 None:intergenic 30.0%
! CCAGGAATGTTTTCAAAATT+TGG + chr4_4:20217168-20217187 Msa0673620:intron 30.0%
AATCAAAGCGAAGATATTTC+GGG - chr4_4:20217285-20217304 None:intergenic 30.0%
GAATCAAAGCGAAGATATTT+CGG - chr4_4:20217286-20217305 None:intergenic 30.0%
AATGCAACTAAGAATGAAAC+TGG + chr4_4:20217374-20217393 Msa0673620:intron 30.0%
ATGCAACTAAGAATGAAACT+GGG + chr4_4:20217375-20217394 Msa0673620:intron 30.0%
ACATATAATTGTCATGCAGT+TGG + chr4_4:20217494-20217513 Msa0673620:intron 30.0%
TCAAGCATGCAAAAAATATC+AGG - chr4_4:20217605-20217624 None:intergenic 30.0%
GAATATATGAAGCTAATCGA+CGG - chr4_4:20217664-20217683 None:intergenic 30.0%
CACATGGAAAGATGAAAATA+AGG - chr4_4:20217692-20217711 None:intergenic 30.0%
AAATATTACTGCAATTGTCC+TGG + chr4_4:20217792-20217811 Msa0673620:intron 30.0%
GAAAATCTGGAGAAAAGTTA+TGG + chr4_4:20217873-20217892 Msa0673620:intron 30.0%
! GAGAAAAGTTATGGTAATGT+GGG + chr4_4:20217882-20217901 Msa0673620:intron 30.0%
! AGAAAAGTTATGGTAATGTG+GGG + chr4_4:20217883-20217902 Msa0673620:intron 30.0%
GAAATTGTGTTTATAAGTGG+TGG + chr4_4:20218098-20218117 Msa0673620:intron 30.0%
!!! ACCTTACAAACTGTTTTTGT+AGG + chr4_4:20218327-20218346 Msa0673620:intron 30.0%
TCCTACAAAAACAGTTTGTA+AGG - chr4_4:20218331-20218350 None:intergenic 30.0%
GTTGTGAATGTTTATTAGGT+AGG + chr4_4:20218899-20218918 Msa0673620:intron 30.0%
ATGTTTATTAGGTAGGTATG+CGG + chr4_4:20218906-20218925 Msa0673620:intron 30.0%
TATACCTATACTCAGCTTAA+TGG - chr4_4:20218998-20219017 None:intergenic 30.0%
GATTATTGAGATATGCAAAG+TGG - chr4_4:20219024-20219043 None:intergenic 30.0%
AATTTCAAAGTTGGAGAATG+AGG + chr4_4:20219237-20219256 Msa0673620:intron 30.0%
TCCAAACTTAAATGTGACAT+AGG + chr4_4:20219428-20219447 Msa0673620:intron 30.0%
! TCCTATGTCACATTTAAGTT+TGG - chr4_4:20219432-20219451 None:intergenic 30.0%
ATAGAATCAACTTGTCTTCA+AGG - chr4_4:20219662-20219681 None:intergenic 30.0%
TAGTGACTAATAGTTGGAAT+AGG + chr4_4:20219725-20219744 Msa0673620:intron 30.0%
!!! CAGTTTTTTTATTGTCTCTG+AGG - chr4_4:20220085-20220104 None:intergenic 30.0%
ACGAATGAATCTTTCTAACA+TGG - chr4_4:20220225-20220244 None:intergenic 30.0%
CTATGAATCAATGTTCTACA+TGG - chr4_4:20220594-20220613 None:intergenic 30.0%
!! CATTGATTCATAGAATTGGT+TGG + chr4_4:20220601-20220620 Msa0673620:intron 30.0%
CATAATAGTCTATTTAGCAG+TGG + chr4_4:20220624-20220643 Msa0673620:intron 30.0%
TTGTCTTCAGAATTGTGAAA+TGG - chr4_4:20220755-20220774 None:intergenic 30.0%
! TTTCACAATTCTGAAGACAA+TGG + chr4_4:20220755-20220774 Msa0673620:intron 30.0%
ATCATCAGATCAAGATTTGA+TGG - chr4_4:20220947-20220966 None:intergenic 30.0%
AAATCATGCATTTGACATAG+TGG - chr4_4:20220980-20220999 None:intergenic 30.0%
ACCATGTCTACAATTAATCT+TGG + chr4_4:20221119-20221138 Msa0673620:intron 30.0%
ACCAAGATTAATTGTAGACA+TGG - chr4_4:20221123-20221142 None:intergenic 30.0%
CTTATTGATGAGAATCTTGT+AGG + chr4_4:20221372-20221391 Msa0673620:three_prime_UTR 30.0%
CCATCCAAAACTTTAAGTAT+TGG - chr4_4:20221529-20221548 None:intergenic 30.0%
!!! CCAATACTTAAAGTTTTGGA+TGG + chr4_4:20221526-20221545 Msa0673620:three_prime_UTR 30.0%
TGTTAAAGAACTAGTGCAAA+TGG - chr4_4:20221602-20221621 None:intergenic 30.0%
! TTTGCACTAGTTCTTTAACA+TGG + chr4_4:20221602-20221621 Msa0673620:three_prime_UTR 30.0%
!! TTTATTGATTCCCATTGTTG+TGG - chr4_4:20221688-20221707 None:intergenic 30.0%
CAATGGGAATCAATAAATCT+AGG + chr4_4:20221691-20221710 Msa0673620:three_prime_UTR 30.0%
AAGAAAGAAGGTGGAATGAA+TGG - chr4_4:20213710-20213729 None:intergenic 35.0%
ATCAGTTACAAGAAAGAAGG+TGG - chr4_4:20213719-20213738 None:intergenic 35.0%
TTTGTAAGAAGAAAAAGCGG+TGG - chr4_4:20213854-20213873 None:intergenic 35.0%
GTTTGTTTGAGTGATGAATG+TGG - chr4_4:20213895-20213914 None:intergenic 35.0%
!!! GTTTTGCTTGTTGGTTTTGT+TGG + chr4_4:20214102-20214121 Msa0673620:CDS 35.0%
GTGTATACATAGGTTGCATT+TGG + chr4_4:20214255-20214274 Msa0673620:intron 35.0%
AGCATTTATGCAATCTCACT+TGG + chr4_4:20214309-20214328 Msa0673620:intron 35.0%
GCATTTATGCAATCTCACTT+GGG + chr4_4:20214310-20214329 Msa0673620:intron 35.0%
CATTTATGCAATCTCACTTG+GGG + chr4_4:20214311-20214330 Msa0673620:intron 35.0%
TTTCATAAGCTATCCTACAG+AGG + chr4_4:20214432-20214451 Msa0673620:intron 35.0%
!! AATTTGCTGAAAACAGCTGA+TGG + chr4_4:20214462-20214481 Msa0673620:intron 35.0%
CAGCATATCAAAACAGTTCA+TGG - chr4_4:20214493-20214512 None:intergenic 35.0%
CATGTCCATAAGTTGTTGTA+TGG + chr4_4:20214613-20214632 Msa0673620:intron 35.0%
CCATAAGTTGTTGTATGGTA+CGG + chr4_4:20214618-20214637 Msa0673620:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr4_4:20214791-20214810 Msa0673620:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr4_4:20214796-20214815 Msa0673620:intron 35.0%
TTGATCTACTCTTCTTACGA+CGG - chr4_4:20214848-20214867 None:intergenic 35.0%
CGTAAGAAGAGTAGATCAAA+TGG + chr4_4:20214849-20214868 Msa0673620:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr4_4:20214852-20214871 Msa0673620:intron 35.0%
TTAAAAGAGGTAGAAGACCT+AGG + chr4_4:20214884-20214903 Msa0673620:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr4_4:20214933-20214952 Msa0673620:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr4_4:20214945-20214964 Msa0673620:intron 35.0%
! TGGTTTATGATGGAACACTA+TGG + chr4_4:20214965-20214984 Msa0673620:intron 35.0%
GGCTTATGAACAACTTATCT+AGG - chr4_4:20215240-20215259 None:intergenic 35.0%
CCCTTGAATAAGGTTACATT+TGG - chr4_4:20215266-20215285 None:intergenic 35.0%
TGTCCTAAACAAACAATGCA+AGG + chr4_4:20215372-20215391 Msa0673620:intron 35.0%
TGTCCTTGCATTGTTTGTTT+AGG - chr4_4:20215378-20215397 None:intergenic 35.0%
AATTGAATAAGTGAGCTGGT+TGG + chr4_4:20215458-20215477 Msa0673620:intron 35.0%
AAAATCCAACAACTGTCTGT+GGG - chr4_4:20215517-20215536 None:intergenic 35.0%
TAAAATCCAACAACTGTCTG+TGG - chr4_4:20215518-20215537 None:intergenic 35.0%
CTACACTTGAAGAGATAACA+AGG - chr4_4:20215658-20215677 None:intergenic 35.0%
TTGTTTGTAGCTGTTTATGC+TGG + chr4_4:20215802-20215821 Msa0673620:CDS 35.0%
TTGTGCAAAGATACATCACA+TGG - chr4_4:20215895-20215914 None:intergenic 35.0%
!! TAACATCATATGGCCTTGTT+TGG + chr4_4:20216394-20216413 Msa0673620:intron 35.0%
!! TTTTCATAAGCTCTCTAGGA+TGG - chr4_4:20216551-20216570 None:intergenic 35.0%
!! TTTTAAGTCTTTGTAGGTGG+CGG + chr4_4:20216765-20216784 Msa0673620:intron 35.0%
!! CTTGCTATTGACAAAGCAAT+TGG + chr4_4:20216865-20216884 Msa0673620:CDS 35.0%
GACAAAGCAATTGGAGAAAA+TGG + chr4_4:20216874-20216893 Msa0673620:CDS 35.0%
AATTGGAGAAAATGGCTTCA+AGG + chr4_4:20216882-20216901 Msa0673620:CDS 35.0%
TAAGTTTCTTCCGTATGTAC+TGG + chr4_4:20216978-20216997 Msa0673620:CDS 35.0%
AAGTTTCTTCCGTATGTACT+GGG + chr4_4:20216979-20216998 Msa0673620:CDS 35.0%
GAAATTGGATTGATATCTCC+AGG + chr4_4:20217101-20217120 Msa0673620:intron 35.0%
ATGAGTAGGAATGTTATTCC+TGG - chr4_4:20217122-20217141 None:intergenic 35.0%
TTCGCTTTGATTCATCATAG+AGG + chr4_4:20217293-20217312 Msa0673620:intron 35.0%
ATAATTGTCATGCAGTTGGT+TGG + chr4_4:20217498-20217517 Msa0673620:intron 35.0%
TAATTGTCATGCAGTTGGTT+GGG + chr4_4:20217499-20217518 Msa0673620:intron 35.0%
CTTCAATCACAAAACACACA+TGG - chr4_4:20217708-20217727 None:intergenic 35.0%
TTTGTGATTGAAGTACGAGA+TGG + chr4_4:20217715-20217734 Msa0673620:intron 35.0%
TAAGGTTTCAAGAAATTGCC+AGG - chr4_4:20217813-20217832 None:intergenic 35.0%
! CTCCAGATTTTCCTTGATTT+CGG - chr4_4:20217865-20217884 None:intergenic 35.0%
! GGAGAAAAGTTATGGTAATG+TGG + chr4_4:20217881-20217900 Msa0673620:intron 35.0%
! GAAAAGTTATGGTAATGTGG+GGG + chr4_4:20217884-20217903 Msa0673620:intron 35.0%
CTAACTCATCTCAACAAAAC+CGG - chr4_4:20218143-20218162 None:intergenic 35.0%
GCTTTATGCCTAAGCTTATT+TGG + chr4_4:20218578-20218597 Msa0673620:intron 35.0%
TAATCCAGCCAAATAAGCTT+AGG - chr4_4:20218589-20218608 None:intergenic 35.0%
GCTGGTTGTGAATGTTTATT+AGG + chr4_4:20218895-20218914 Msa0673620:intron 35.0%
GGTTTCATTACTTAGAAAGC+AGG - chr4_4:20219094-20219113 None:intergenic 35.0%
!! TTCTAAAATTCTGGCCTCAT+AGG + chr4_4:20219262-20219281 Msa0673620:intron 35.0%
! GAAAATGGGAAGCCAATTTT+CGG - chr4_4:20219314-20219333 None:intergenic 35.0%
ATGGAAAGGGTCATGAAAAT+GGG - chr4_4:20219328-20219347 None:intergenic 35.0%
TATGGAAAGGGTCATGAAAA+TGG - chr4_4:20219329-20219348 None:intergenic 35.0%
! TCATGACCCTTTCCATATTT+TGG + chr4_4:20219332-20219351 Msa0673620:intron 35.0%
CGTTACAAAGGATAGAACTA+TGG + chr4_4:20219542-20219561 Msa0673620:intron 35.0%
!! AGACAAGTTGATTCTATAGC+AGG + chr4_4:20219665-20219684 Msa0673620:intron 35.0%
TTGTAGCACACATATCAAAG+AGG + chr4_4:20219769-20219788 Msa0673620:intron 35.0%
ATTCTGTTATAGGAGAGAGA+TGG + chr4_4:20219887-20219906 Msa0673620:intron 35.0%
GGGAAAAGACAATAACAATC+TGG - chr4_4:20219973-20219992 None:intergenic 35.0%
! GTCTTTTCCCTGTAATAAAC+TGG + chr4_4:20219983-20220002 Msa0673620:intron 35.0%
!!! TCCATGTGATGTCAGTTTTT+TGG + chr4_4:20220017-20220036 Msa0673620:intron 35.0%
TCCAAAAAACTGACATCACA+TGG - chr4_4:20220021-20220040 None:intergenic 35.0%
AGCTTGACCTTGTATTCTTT+AGG + chr4_4:20220044-20220063 Msa0673620:intron 35.0%
GCTTGACCTTGTATTCTTTA+GGG + chr4_4:20220045-20220064 Msa0673620:intron 35.0%
ATCTGTCCCTAAAGAATACA+AGG - chr4_4:20220054-20220073 None:intergenic 35.0%
!! CGTTGTTTCTAATGCAATTC+AGG + chr4_4:20220122-20220141 Msa0673620:intron 35.0%
TCAACCAAGTGTTATCTGAT+GGG - chr4_4:20220180-20220199 None:intergenic 35.0%
ATCAACCAAGTGTTATCTGA+TGG - chr4_4:20220181-20220200 None:intergenic 35.0%
GAATCTGAACTTAGTTCACT+TGG + chr4_4:20220287-20220306 Msa0673620:CDS 35.0%
ATATGTCACAAAGCTTGCAA+AGG + chr4_4:20220370-20220389 Msa0673620:CDS 35.0%
AATGTTTCTTTGTCTTGGAG+TGG + chr4_4:20220556-20220575 Msa0673620:intron 35.0%
ATGTTTCTTTGTCTTGGAGT+GGG + chr4_4:20220557-20220576 Msa0673620:intron 35.0%
ATTTGGATTTCCTGCATTGT+TGG + chr4_4:20220843-20220862 Msa0673620:intron 35.0%
AAACAGGTCTAAAAGCAAGT+TGG - chr4_4:20220910-20220929 None:intergenic 35.0%
ACTTCTTATCGTTACAATGC+AGG + chr4_4:20221160-20221179 Msa0673620:intron 35.0%
TGATAGATGAGAGAGAATCA+AGG + chr4_4:20221308-20221327 Msa0673620:three_prime_UTR 35.0%
TAATTTACAAGGGGAATGCT+AGG - chr4_4:20221345-20221364 None:intergenic 35.0%
CCGACATTGTTTCAATTCAA+GGG - chr4_4:20221423-20221442 None:intergenic 35.0%
CCCTTGAATTGAAACAATGT+CGG + chr4_4:20221420-20221439 Msa0673620:three_prime_UTR 35.0%
TCCGACATTGTTTCAATTCA+AGG - chr4_4:20221424-20221443 None:intergenic 35.0%
!!! TAAAGTTTTGGATGGAGATG+TGG + chr4_4:20221534-20221553 Msa0673620:three_prime_UTR 35.0%
AACTAGTGCAAATGGAATCT+AGG - chr4_4:20221594-20221613 None:intergenic 35.0%
TAGTTCTTTAACATGGTCAG+AGG + chr4_4:20221609-20221628 Msa0673620:three_prime_UTR 35.0%
AGTTCTTTAACATGGTCAGA+GGG + chr4_4:20221610-20221629 Msa0673620:three_prime_UTR 35.0%
GAAGAAGATGATAGACATGG+TGG - chr4_4:20213796-20213815 None:intergenic 40.0%
AGGTGAATCTGAGAAAGAAG+AGG + chr4_4:20214035-20214054 Msa0673620:CDS 40.0%
ATCTGAGAAAGAAGAGGAAG+AGG + chr4_4:20214041-20214060 Msa0673620:CDS 40.0%
AAAGAAGAGGAAGAGGATGA+TGG + chr4_4:20214048-20214067 Msa0673620:CDS 40.0%
!! GATGATGGTGCTGCTTTAAA+GGG + chr4_4:20214063-20214082 Msa0673620:CDS 40.0%
!!! TGCTTTAAAGGGTACCCTTT+TGG + chr4_4:20214074-20214093 Msa0673620:CDS 40.0%
AAGCAAAACACCAGCCAAAA+GGG - chr4_4:20214091-20214110 None:intergenic 40.0%
!!! TTGCTTGTTGGTTTTGTTGG+TGG + chr4_4:20214105-20214124 Msa0673620:CDS 40.0%
!! TTGGTGGTTTTGCTTCTGTT+GGG + chr4_4:20214121-20214140 Msa0673620:CDS 40.0%
! CAATTCTCTGGCTTCATTGA+AGG + chr4_4:20214180-20214199 Msa0673620:CDS 40.0%
CTATGTATACACTGCATGTC+TGG - chr4_4:20214247-20214266 None:intergenic 40.0%
CAGACATGCAGTGTATACAT+AGG + chr4_4:20214245-20214264 Msa0673620:intron 40.0%
TCCACATGTTTAAGCACTTG+TGG + chr4_4:20214557-20214576 Msa0673620:intron 40.0%
CCACATGTTTAAGCACTTGT+GGG + chr4_4:20214558-20214577 Msa0673620:intron 40.0%
CCGTACCATACAACAACTTA+TGG - chr4_4:20214621-20214640 None:intergenic 40.0%
CACTTACTTGATTCTCGTGT+TGG - chr4_4:20214663-20214682 None:intergenic 40.0%
CGAGAATCAAGTAAGTGTAG+CGG + chr4_4:20214666-20214685 Msa0673620:intron 40.0%
GGATAAGTGGTAAGACTAGA+CGG + chr4_4:20214707-20214726 Msa0673620:intron 40.0%
GATAAGTGGTAAGACTAGAC+GGG + chr4_4:20214708-20214727 Msa0673620:intron 40.0%
TCTTCTTACGACGGTATCTA+CGG - chr4_4:20214839-20214858 None:intergenic 40.0%
! AAAGCCTTATCCCACTACTA+GGG - chr4_4:20215015-20215034 None:intergenic 40.0%
AGTGCACTTATCAAAGAGCT+TGG + chr4_4:20215544-20215563 Msa0673620:intron 40.0%
CGTAAGCTCTTAGAGATAGT+TGG + chr4_4:20215617-20215636 Msa0673620:intron 40.0%
! TTAGATGATGTGTGGTCTTG+TGG - chr4_4:20215730-20215749 None:intergenic 40.0%
! TATCCATTCTTTTGGTGAGC+AGG + chr4_4:20215757-20215776 Msa0673620:intron 40.0%
TAACCTGCTCACCAAAAGAA+TGG - chr4_4:20215763-20215782 None:intergenic 40.0%
! TTCTTTTGGTGAGCAGGTTA+TGG + chr4_4:20215763-20215782 Msa0673620:intron 40.0%
TGTAGCTGTTTATGCTGGAT+TGG + chr4_4:20215807-20215826 Msa0673620:CDS 40.0%
! TTATGCTGGATTGGAGGTAT+CGG + chr4_4:20215816-20215835 Msa0673620:intron 40.0%
AAGGGATCCAAAAAGAAGTC+CGG - chr4_4:20216067-20216086 None:intergenic 40.0%
! CTTCTTTTTGGATCCCTTAC+CGG + chr4_4:20216069-20216088 Msa0673620:CDS 40.0%
ACCATCATAGTCTCTATCAG+TGG + chr4_4:20216093-20216112 Msa0673620:CDS 40.0%
TCCACTGATAGAGACTATGA+TGG - chr4_4:20216097-20216116 None:intergenic 40.0%
CCAAAGAAAATGGCAGCAAA+GGG - chr4_4:20216930-20216949 None:intergenic 40.0%
!!! CCTTTGCTGCCATTTTCTTT+GGG + chr4_4:20216928-20216947 Msa0673620:CDS 40.0%
!!! CTTTGCTGCCATTTTCTTTG+GGG + chr4_4:20216929-20216948 Msa0673620:CDS 40.0%
AATTGTCATGCAGTTGGTTG+GGG + chr4_4:20217500-20217519 Msa0673620:intron 40.0%
!!! TATGTTAGTGCTGGTGCTTT+TGG + chr4_4:20217544-20217563 Msa0673620:CDS 40.0%
TGAAACCTTACTGAAAGTCC+AGG + chr4_4:20217823-20217842 Msa0673620:intron 40.0%
CTAAACCTGGACTTTCAGTA+AGG - chr4_4:20217831-20217850 None:intergenic 40.0%
CTTACTGAAAGTCCAGGTTT+AGG + chr4_4:20217829-20217848 Msa0673620:intron 40.0%
! TTTTCCTTGATTTCGGCCAA+AGG - chr4_4:20217858-20217877 None:intergenic 40.0%
!!! CGGTTTTGTTGAGATGAGTT+AGG + chr4_4:20218141-20218160 Msa0673620:intron 40.0%
CAATGGATCTTGGATAGACT+CGG - chr4_4:20218192-20218211 None:intergenic 40.0%
! TTTGACATCTAGAGTGTGAC+CGG - chr4_4:20218222-20218241 None:intergenic 40.0%
GCTCATTTCTCATCTGATGT+GGG - chr4_4:20218275-20218294 None:intergenic 40.0%
AGCTCATTTCTCATCTGATG+TGG - chr4_4:20218276-20218295 None:intergenic 40.0%
GTTGCTTACATCCTGTCTAT+GGG + chr4_4:20218402-20218421 Msa0673620:intron 40.0%
GAATGATCTTTCTGTTGTCG+AGG + chr4_4:20218464-20218483 Msa0673620:intron 40.0%
TTGACCAAGAATTGTTTGGC+AGG + chr4_4:20218528-20218547 Msa0673620:intron 40.0%
AAGCTTAGGCATAAAGCAAC+TGG - chr4_4:20218575-20218594 None:intergenic 40.0%
TATGCCTAAGCTTATTTGGC+TGG + chr4_4:20218582-20218601 Msa0673620:intron 40.0%
! ATTTGGCTGGATTAGACCAA+AGG + chr4_4:20218595-20218614 Msa0673620:intron 40.0%
ATGACTCTACAGGAATGCAA+TGG - chr4_4:20218852-20218871 None:intergenic 40.0%
CATTCCTGTAGAGTCATTCA+GGG + chr4_4:20218855-20218874 Msa0673620:intron 40.0%
CTCATAGCAGCCACATAATT+GGG + chr4_4:20218962-20218981 Msa0673620:intron 40.0%
CTGTACACGTCCTCTTAAAA+AGG - chr4_4:20219051-20219070 None:intergenic 40.0%
CATTACTTAGAAAGCAGGTC+AGG - chr4_4:20219089-20219108 None:intergenic 40.0%
TACCTCTCTATTTGAGTCAG+GGG - chr4_4:20219192-20219211 None:intergenic 40.0%
GTACCTCTCTATTTGAGTCA+GGG - chr4_4:20219193-20219212 None:intergenic 40.0%
TGTACCTCTCTATTTGAGTC+AGG - chr4_4:20219194-20219213 None:intergenic 40.0%
! CAATTTTCGGTCAGTCTTCA+TGG - chr4_4:20219301-20219320 None:intergenic 40.0%
CATGAAGACTGACCGAAAAT+TGG + chr4_4:20219299-20219318 Msa0673620:intron 40.0%
CTCTGGCCAAAATATGGAAA+GGG - chr4_4:20219341-20219360 None:intergenic 40.0%
ACTCTGGCCAAAATATGGAA+AGG - chr4_4:20219342-20219361 None:intergenic 40.0%
!!! TTCCATATTTTGGCCAGAGT+TGG + chr4_4:20219342-20219361 Msa0673620:intron 40.0%
GTACAAGCTTAACCTACCAA+AGG + chr4_4:20219374-20219393 Msa0673620:intron 40.0%
AAATTCTCGAGTCCTTTGGT+AGG - chr4_4:20219389-20219408 None:intergenic 40.0%
ATAGGAAACTACCAAGTGCA+GGG + chr4_4:20219446-20219465 Msa0673620:intron 40.0%
!! ACTTTTCCCAGAACTGGTTT+AGG - chr4_4:20219519-20219538 None:intergenic 40.0%
GGGAAAAGTAAGCGTTACAA+AGG + chr4_4:20219530-20219549 Msa0673620:intron 40.0%
GATCAATTGGAAAGACAGCT+CGG + chr4_4:20219578-20219597 Msa0673620:intron 40.0%
CTCGGTTGAAAATGTCACAT+AGG + chr4_4:20219596-20219615 Msa0673620:intron 40.0%
GGTTGAAAATGTCACATAGG+AGG + chr4_4:20219599-20219618 Msa0673620:intron 40.0%
TTGTCTTCAAGGCTGAACTT+CGG - chr4_4:20219651-20219670 None:intergenic 40.0%
TATTGTTAGCGATCGTGAAG+TGG + chr4_4:20219691-20219710 Msa0673620:intron 40.0%
TCCAACTATTAGTCACTAGC+TGG - chr4_4:20219723-20219742 None:intergenic 40.0%
!! AAAAGAGTGCTGAGTTGACA+AGG + chr4_4:20219792-20219811 Msa0673620:intron 40.0%
!! AAAGAGTGCTGAGTTGACAA+GGG + chr4_4:20219793-20219812 Msa0673620:intron 40.0%
! TTCTTTTATGAGGGAACCAC+TGG + chr4_4:20219925-20219944 Msa0673620:intron 40.0%
AGTGCTGCCAGTTTATTACA+GGG - chr4_4:20219993-20220012 None:intergenic 40.0%
! AAGTGCTGCCAGTTTATTAC+AGG - chr4_4:20219994-20220013 None:intergenic 40.0%
GCTCAGTTCAAAGAGCAAAA+TGG - chr4_4:20220158-20220177 None:intergenic 40.0%
TCTGAACTTAGTTCACTTGG+AGG + chr4_4:20220290-20220309 Msa0673620:CDS 40.0%
ATATGTAGCAGCTAATGCAG+TGG - chr4_4:20220354-20220373 None:intergenic 40.0%
ATGCACTAAGAGGGTAAAGT+TGG - chr4_4:20220475-20220494 None:intergenic 40.0%
TACCCTCTTAGTGCATCATT+AGG + chr4_4:20220479-20220498 Msa0673620:intron 40.0%
ACCCTCTTAGTGCATCATTA+GGG + chr4_4:20220480-20220499 Msa0673620:intron 40.0%
TCCCTAATGATGCACTAAGA+GGG - chr4_4:20220484-20220503 None:intergenic 40.0%
ATCCCTAATGATGCACTAAG+AGG - chr4_4:20220485-20220504 None:intergenic 40.0%
TGAACCTATGTCAGGACTAA+AGG - chr4_4:20220788-20220807 None:intergenic 40.0%
AAATCCAAATCCGACTGCAA+GGG - chr4_4:20220833-20220852 None:intergenic 40.0%
GGCTGCTAACTTTAGTAAAC+AGG - chr4_4:20220926-20220945 None:intergenic 40.0%
CACATCATTGAAAACTCCAG+AGG - chr4_4:20221034-20221053 None:intergenic 40.0%
CTTCATTCGCAAATGTGTGT+CGG - chr4_4:20221234-20221253 None:intergenic 40.0%
AATGAAGGCAGGTCTATGAT+CGG + chr4_4:20221247-20221266 Msa0673620:three_prime_UTR 40.0%
TGAGAGAGAATCAAGGAAAG+TGG + chr4_4:20221315-20221334 Msa0673620:three_prime_UTR 40.0%
ATTCAAGGGAGCAACACAAA+AGG - chr4_4:20221409-20221428 None:intergenic 40.0%
TGCCAACTTCTAACCAACAT+GGG - chr4_4:20221471-20221490 None:intergenic 40.0%
TTGCCAACTTCTAACCAACA+TGG - chr4_4:20221472-20221491 None:intergenic 40.0%
GATGTGGTGTCTTAATCTCT+TGG + chr4_4:20221550-20221569 Msa0673620:three_prime_UTR 40.0%
TACTTACCCATCCACAACAA+TGG + chr4_4:20221674-20221693 Msa0673620:three_prime_UTR 40.0%
ACTTACCCATCCACAACAAT+GGG + chr4_4:20221675-20221694 Msa0673620:three_prime_UTR 40.0%
TGATTCCCATTGTTGTGGAT+GGG - chr4_4:20221683-20221702 None:intergenic 40.0%
TTGATTCCCATTGTTGTGGA+TGG - chr4_4:20221684-20221703 None:intergenic 40.0%
GAAGATGATAGACATGGTGG+TGG - chr4_4:20213793-20213812 None:intergenic 45.0%
!! GGATGATGGTGCTGCTTTAA+AGG + chr4_4:20214062-20214081 Msa0673620:CDS 45.0%
!!! TTAAAGGGTACCCTTTTGGC+TGG + chr4_4:20214078-20214097 Msa0673620:CDS 45.0%
CAAGCAAAACACCAGCCAAA+AGG - chr4_4:20214092-20214111 None:intergenic 45.0%
! TTGGCTGGTGTTTTGCTTGT+TGG + chr4_4:20214093-20214112 Msa0673620:CDS 45.0%
!!! GTTGGTGGTTTTGCTTCTGT+TGG + chr4_4:20214120-20214139 Msa0673620:CDS 45.0%
! CAAACATACTCAGAGCGCTA+GGG - chr4_4:20214517-20214536 None:intergenic 45.0%
CCCACAAGTGCTTAAACATG+TGG - chr4_4:20214561-20214580 None:intergenic 45.0%
TGGGACTGTTTGAGCGAATT+TGG + chr4_4:20214577-20214596 Msa0673620:intron 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr4_4:20214626-20214645 Msa0673620:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr4_4:20214627-20214646 Msa0673620:intron 45.0%
! AAGTAAGTGTAGCGGAGAAG+AGG + chr4_4:20214674-20214693 Msa0673620:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr4_4:20214744-20214763 Msa0673620:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr4_4:20214745-20214764 Msa0673620:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr4_4:20214746-20214765 Msa0673620:intron 45.0%
CTTCTTACGACGGTATCTAC+GGG - chr4_4:20214838-20214857 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+TGG + chr4_4:20214861-20214880 Msa0673620:intron 45.0%
GAGGAGAGTCTGGTTAAAAG+AGG + chr4_4:20214871-20214890 Msa0673620:intron 45.0%
! AAGCCTTATCCCACTACTAG+GGG - chr4_4:20215014-20215033 None:intergenic 45.0%
! CAAAGCCTTATCCCACTACT+AGG - chr4_4:20215016-20215035 None:intergenic 45.0%
CTGACACATGCACTACTGTT+TGG - chr4_4:20215209-20215228 None:intergenic 45.0%
ACAGTAGTGCATGTGTCAGT+AGG + chr4_4:20215210-20215229 Msa0673620:intron 45.0%
GGGGAATTGAATAAGTGAGC+TGG + chr4_4:20215454-20215473 Msa0673620:intron 45.0%
! AGCTGTTTATGCTGGATTGG+AGG + chr4_4:20215810-20215829 Msa0673620:CDS 45.0%
ATTCCCTTAACCATGTCAGC+CGG + chr4_4:20216045-20216064 Msa0673620:CDS 45.0%
AAAAAGAAGTCCGGCTGACA+TGG - chr4_4:20216058-20216077 None:intergenic 45.0%
! ATGTCAGCCGGACTTCTTTT+TGG + chr4_4:20216057-20216076 Msa0673620:CDS 45.0%
! GATAGAGACTATGATGGTGC+CGG - chr4_4:20216091-20216110 None:intergenic 45.0%
!!! CCCTTTGCTGCCATTTTCTT+TGG + chr4_4:20216927-20216946 Msa0673620:CDS 45.0%
CCCAAAGAAAATGGCAGCAA+AGG - chr4_4:20216931-20216950 None:intergenic 45.0%
TTCTTCCGTATGTACTGGGA+AGG + chr4_4:20216983-20217002 Msa0673620:CDS 45.0%
CCATACCTTCCCAGTACATA+CGG - chr4_4:20216991-20217010 None:intergenic 45.0%
CTAACATAAGCCCATGTTCC+TGG - chr4_4:20217532-20217551 None:intergenic 45.0%
ACATGGGCTTATGTTAGTGC+TGG + chr4_4:20217535-20217554 Msa0673620:CDS 45.0%
! GTCCAGGTTTAGGTTTCCTT+TGG + chr4_4:20217839-20217858 Msa0673620:intron 45.0%
GTTTCCTTTGGCCGAAATCA+AGG + chr4_4:20217851-20217870 Msa0673620:intron 45.0%
GGCCGAAATCAAGGAAAATC+TGG + chr4_4:20217860-20217879 Msa0673620:intron 45.0%
! GGTGCGAGATCAGAATGTTT+TGG + chr4_4:20217965-20217984 Msa0673620:intron 45.0%
TCTGTTGAGAAGTCTCGCAT+TGG + chr4_4:20218061-20218080 Msa0673620:intron 45.0%
GCAATTGTCACCTTACAAGC+CGG + chr4_4:20218121-20218140 Msa0673620:intron 45.0%
!! CTCAACAAAACCGGCTTGTA+AGG - chr4_4:20218134-20218153 None:intergenic 45.0%
CGAGTCTATCCAAGATCCAT+TGG + chr4_4:20218190-20218209 Msa0673620:intron 45.0%
! TTGACATCTAGAGTGTGACC+GGG - chr4_4:20218221-20218240 None:intergenic 45.0%
CACACTCTAGATGTCAAACC+CGG + chr4_4:20218224-20218243 Msa0673620:intron 45.0%
GGTTGCTTACATCCTGTCTA+TGG + chr4_4:20218401-20218420 Msa0673620:intron 45.0%
CAGACCTGCCAAACAATTCT+TGG - chr4_4:20218535-20218554 None:intergenic 45.0%
CAAGAATTGTTTGGCAGGTC+TGG + chr4_4:20218533-20218552 Msa0673620:intron 45.0%
! GCAGGTCTGGTATCGAATAT+GGG + chr4_4:20218546-20218565 Msa0673620:intron 45.0%
! TGGATTAGACCAAAGGTCAG+AGG + chr4_4:20218602-20218621 Msa0673620:intron 45.0%
GGATTAGACCAAAGGTCAGA+GGG + chr4_4:20218603-20218622 Msa0673620:intron 45.0%
GATTAGACCAAAGGTCAGAG+GGG + chr4_4:20218604-20218623 Msa0673620:intron 45.0%
AACAGGGCCATCATCAGAAA+CGG - chr4_4:20218734-20218753 None:intergenic 45.0%
CTAACGCATCTTCCTGAACA+GGG - chr4_4:20218750-20218769 None:intergenic 45.0%
ACTAACGCATCTTCCTGAAC+AGG - chr4_4:20218751-20218770 None:intergenic 45.0%
CAGGAATGCAATGGAACTCT+TGG - chr4_4:20218843-20218862 None:intergenic 45.0%
GCATTCCTGTAGAGTCATTC+AGG + chr4_4:20218854-20218873 Msa0673620:intron 45.0%
GCTATGAGGCAAAGTAGCAT+AGG - chr4_4:20218950-20218969 None:intergenic 45.0%
CCAATTATGTGGCTGCTATG+AGG - chr4_4:20218964-20218983 None:intergenic 45.0%
CCTCATAGCAGCCACATAAT+TGG + chr4_4:20218961-20218980 Msa0673620:intron 45.0%
AGCCACATAATTGGGCTCAT+CGG + chr4_4:20218970-20218989 Msa0673620:intron 45.0%
GGGTCCATTAAGCTGAGTAT+AGG + chr4_4:20218991-20219010 Msa0673620:intron 45.0%
CTTAGAAAGCAGGTCAGGTT+TGG - chr4_4:20219084-20219103 None:intergenic 45.0%
! GTTATTTGGAGCTCGAGTTG+TGG - chr4_4:20219165-20219184 None:intergenic 45.0%
GAGTCAGGGGCTTAGTTATT+TGG - chr4_4:20219179-20219198 None:intergenic 45.0%
CTCCAACTCTGGCCAAAATA+TGG - chr4_4:20219347-20219366 None:intergenic 45.0%
!!! TATTTTGGCCAGAGTTGGAG+AGG + chr4_4:20219347-20219366 Msa0673620:intron 45.0%
GGGTAAATTCTCGAGTCCTT+TGG - chr4_4:20219393-20219412 None:intergenic 45.0%
CATAGGAAACTACCAAGTGC+AGG + chr4_4:20219445-20219464 Msa0673620:intron 45.0%
TAGGAAACTACCAAGTGCAG+GGG + chr4_4:20219447-20219466 Msa0673620:intron 45.0%
GTTAAACTTCCAGCTACCCA+TGG - chr4_4:20219479-20219498 None:intergenic 45.0%
TTAGGCTCAGCATCAGATTC+AGG - chr4_4:20219501-20219520 None:intergenic 45.0%
!! ACGCTTACTTTTCCCAGAAC+TGG - chr4_4:20219525-20219544 None:intergenic 45.0%
TGTCTTCAAGGCTGAACTTC+GGG - chr4_4:20219650-20219669 None:intergenic 45.0%
TTAGCGATCGTGAAGTGGAA+TGG + chr4_4:20219696-20219715 Msa0673620:intron 45.0%
TAGCGATCGTGAAGTGGAAT+GGG + chr4_4:20219697-20219716 Msa0673620:intron 45.0%
GCCAGCTAGTGACTAATAGT+TGG + chr4_4:20219719-20219738 Msa0673620:intron 45.0%
TAATAGTTGGAATAGGCCCC+AGG + chr4_4:20219732-20219751 Msa0673620:intron 45.0%
TGGCTGGAGTTAGTTGTATC+AGG + chr4_4:20219833-20219852 Msa0673620:intron 45.0%
GGCTGGAGTTAGTTGTATCA+GGG + chr4_4:20219834-20219853 Msa0673620:intron 45.0%
TGAGCCCATCAGATAACACT+TGG + chr4_4:20220173-20220192 Msa0673620:intron 45.0%
TCCTGACATAGGTTCATACC+TGG + chr4_4:20220792-20220811 Msa0673620:intron 45.0%
CCTGACATAGGTTCATACCT+GGG + chr4_4:20220793-20220812 Msa0673620:intron 45.0%
AATCCAAATCCGACTGCAAG+GGG - chr4_4:20220832-20220851 None:intergenic 45.0%
GAAATCCAAATCCGACTGCA+AGG - chr4_4:20220834-20220853 None:intergenic 45.0%
CTATTGTCAGCCAACAATGC+AGG - chr4_4:20220856-20220875 None:intergenic 45.0%
TTGAAAACTCCAGAGGACGA+GGG - chr4_4:20221027-20221046 None:intergenic 45.0%
ATTGAAAACTCCAGAGGACG+AGG - chr4_4:20221028-20221047 None:intergenic 45.0%
CGACACACATTTGCGAATGA+AGG + chr4_4:20221232-20221251 Msa0673620:three_prime_UTR 45.0%
ACACATTTGCGAATGAAGGC+AGG + chr4_4:20221236-20221255 Msa0673620:three_prime_UTR 45.0%
GCAGGTCTATGATCGGATTA+GGG + chr4_4:20221254-20221273 Msa0673620:three_prime_UTR 45.0%
! GTCCCATGTTGGTTAGAAGT+TGG + chr4_4:20221466-20221485 Msa0673620:intron 45.0%
GTGGTGTCTTAATCTCTTGG+TGG + chr4_4:20221553-20221572 Msa0673620:three_prime_UTR 45.0%
TGTGGATGGGTAAGTACAAG+AGG - chr4_4:20221670-20221689 None:intergenic 45.0%
!! AATTTAAATAAATCTATAAA+CGG - chr4_4:20217912-20217931 None:intergenic 5.0%
!! TTTATAGATTTATTTAAATT+AGG + chr4_4:20217912-20217931 Msa0673620:intron 5.0%
! CCAAACATACTCAGAGCGCT+AGG - chr4_4:20214518-20214537 None:intergenic 50.0%
! CCTAGCGCTCTGAGTATGTT+TGG + chr4_4:20214515-20214534 Msa0673620:intron 50.0%
AGGATGTTGCGCTGGATAAG+TGG + chr4_4:20214694-20214713 Msa0673620:intron 50.0%
GTGGTAAGACTAGACGGGAT+AGG + chr4_4:20214713-20214732 Msa0673620:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr4_4:20214747-20214766 Msa0673620:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr4_4:20214752-20214771 None:intergenic 50.0%
ACTACTAGGGGTCAGCTACA+TGG - chr4_4:20215002-20215021 None:intergenic 50.0%
ATGTAGCTGACCCCTAGTAG+TGG + chr4_4:20215001-20215020 Msa0673620:intron 50.0%
TGTAGCTGACCCCTAGTAGT+GGG + chr4_4:20215002-20215021 Msa0673620:intron 50.0%
! TGACCCCTAGTAGTGGGATA+AGG + chr4_4:20215008-20215027 Msa0673620:intron 50.0%
AACCTCCCACAGACAGTTGT+TGG + chr4_4:20215509-20215528 Msa0673620:intron 50.0%
ATCCAACAACTGTCTGTGGG+AGG - chr4_4:20215514-20215533 None:intergenic 50.0%
TGAGCAGGTTATGGTTCAGC+TGG + chr4_4:20215772-20215791 Msa0673620:intron 50.0%
GGCAGGAATTGCAAGGATCT+GGG - chr4_4:20216025-20216044 None:intergenic 50.0%
TGGCAGGAATTGCAAGGATC+TGG - chr4_4:20216026-20216045 None:intergenic 50.0%
AGGGAATGGCAGGAATTGCA+AGG - chr4_4:20216032-20216051 None:intergenic 50.0%
GACATGGTTAAGGGAATGGC+AGG - chr4_4:20216042-20216061 None:intergenic 50.0%
GGCTGACATGGTTAAGGGAA+TGG - chr4_4:20216046-20216065 None:intergenic 50.0%
AGTCCGGCTGACATGGTTAA+GGG - chr4_4:20216051-20216070 None:intergenic 50.0%
AAGTCCGGCTGACATGGTTA+AGG - chr4_4:20216052-20216071 None:intergenic 50.0%
!! GACTATGATGGTGCCGGTAA+GGG - chr4_4:20216085-20216104 None:intergenic 50.0%
!! AGACTATGATGGTGCCGGTA+AGG - chr4_4:20216086-20216105 None:intergenic 50.0%
CAAAGGGCTCAAACGAAGCA+GGG - chr4_4:20216914-20216933 None:intergenic 50.0%
CCGTATGTACTGGGAAGGTA+TGG + chr4_4:20216988-20217007 Msa0673620:intron 50.0%
GGCCAAAGGAAACCTAAACC+TGG - chr4_4:20217844-20217863 None:intergenic 50.0%
! TGACATCTAGAGTGTGACCG+GGG - chr4_4:20218220-20218239 None:intergenic 50.0%
ACTCTAGATGTCAAACCCGG+TGG + chr4_4:20218227-20218246 Msa0673620:intron 50.0%
ATGTCAAACCCGGTGGTGAT+GGG + chr4_4:20218234-20218253 Msa0673620:intron 50.0%
! GGCAGGTCTGGTATCGAATA+TGG + chr4_4:20218545-20218564 Msa0673620:intron 50.0%
AGCACGTGGAACTCCTCTTT+CGG - chr4_4:20218694-20218713 None:intergenic 50.0%
GGACAGACCGTTTCTGATGA+TGG + chr4_4:20218724-20218743 Msa0673620:intron 50.0%
!! TTCTGATGATGGCCCTGTTC+AGG + chr4_4:20218735-20218754 Msa0673620:intron 50.0%
GTAGCCCTGAATGACTCTAC+AGG - chr4_4:20218862-20218881 None:intergenic 50.0%
CAGGGCTACACTCTTAAAGC+TGG + chr4_4:20218873-20218892 Msa0673620:intron 50.0%
GCTACACTCTTAAAGCTGGC+TGG + chr4_4:20218877-20218896 Msa0673620:intron 50.0%
GCCACATAATTGGGCTCATC+GGG + chr4_4:20218971-20218990 Msa0673620:intron 50.0%
ACCCGATGAGCCCAATTATG+TGG - chr4_4:20218975-20218994 None:intergenic 50.0%
AGAAAGCAGGTCAGGTTTGG+TGG - chr4_4:20219081-20219100 None:intergenic 50.0%
TGAAACCAAAGTCGCTGCTG+TGG + chr4_4:20219107-20219126 Msa0673620:intron 50.0%
AGCCCCTGACTCAAATAGAG+AGG + chr4_4:20219187-20219206 Msa0673620:intron 50.0%
GCAACAGACTGTTGCCTATG+AGG - chr4_4:20219279-20219298 None:intergenic 50.0%
GTACTACACCTCTCCAACTC+TGG - chr4_4:20219358-20219377 None:intergenic 50.0%
AGGAAACTACCAAGTGCAGG+GGG + chr4_4:20219448-20219467 Msa0673620:intron 50.0%
TGCTGAGCCTAAACCAGTTC+TGG + chr4_4:20219509-20219528 Msa0673620:intron 50.0%
GCTGAGCCTAAACCAGTTCT+GGG + chr4_4:20219510-20219529 Msa0673620:intron 50.0%
CTGAACTTCGGGAACTGGTT+AGG - chr4_4:20219639-20219658 None:intergenic 50.0%
! AGTGCTGAGTTGACAAGGGA+GGG + chr4_4:20219797-20219816 Msa0673620:intron 50.0%
! TTATGAGGGAACCACTGGCT+TGG + chr4_4:20219930-20219949 Msa0673620:intron 50.0%
!! TATGAGGGAACCACTGGCTT+GGG + chr4_4:20219931-20219950 Msa0673620:intron 50.0%
AGTATATCAGCCCAAGCCAG+TGG - chr4_4:20219944-20219963 None:intergenic 50.0%
AACAATCAGCTGCTGACGCT+TGG + chr4_4:20220314-20220333 Msa0673620:CDS 50.0%
ACAATCAGCTGCTGACGCTT+GGG + chr4_4:20220315-20220334 Msa0673620:CDS 50.0%
TGCGCCTTTAGTCCTGACAT+AGG + chr4_4:20220781-20220800 Msa0673620:intron 50.0%
CCCAGGTATGAACCTATGTC+AGG - chr4_4:20220796-20220815 None:intergenic 50.0%
CATAGGTTCATACCTGGGCA+AGG + chr4_4:20220798-20220817 Msa0673620:intron 50.0%
TTTCCCCTTGCAGTCGGATT+TGG + chr4_4:20220826-20220845 Msa0673620:intron 50.0%
TGAAAACTCCAGAGGACGAG+GGG - chr4_4:20221026-20221045 None:intergenic 50.0%
CTAGACCCAGTAGAGACTAG+AGG + chr4_4:20221205-20221224 Msa0673620:exon 50.0%
GGTTGCCTCTAGTCTCTACT+GGG - chr4_4:20221213-20221232 None:intergenic 50.0%
GGCAGGTCTATGATCGGATT+AGG + chr4_4:20221253-20221272 Msa0673620:three_prime_UTR 50.0%
! AGTGGTGGTTAGTCCCATGT+TGG + chr4_4:20221455-20221474 Msa0673620:intron 50.0%
GCAAAGGGCTCAAACGAAGC+AGG - chr4_4:20216915-20216934 None:intergenic 55.0%
AGTTGGTTGGGGATGCTTCC+AGG + chr4_4:20217511-20217530 Msa0673620:intron 55.0%
TGGGGATGCTTCCAGGAACA+TGG + chr4_4:20217518-20217537 Msa0673620:CDS 55.0%
GGGGATGCTTCCAGGAACAT+GGG + chr4_4:20217519-20217538 Msa0673620:CDS 55.0%
CAAGATCCATTGGACCACCC+CGG + chr4_4:20218200-20218219 Msa0673620:intron 55.0%
GATGTCAAACCCGGTGGTGA+TGG + chr4_4:20218233-20218252 Msa0673620:intron 55.0%
AACACACACCCATCACCACC+GGG - chr4_4:20218245-20218264 None:intergenic 55.0%
CAACACACACCCATCACCAC+CGG - chr4_4:20218246-20218265 None:intergenic 55.0%
GGACGTCATCACCCATAGAC+AGG - chr4_4:20218416-20218435 None:intergenic 55.0%
! TATGGGTGATGACGTCCCTC+TGG + chr4_4:20218419-20218438 Msa0673620:intron 55.0%
!! TGATGACGTCCCTCTGGAGT+AGG + chr4_4:20218425-20218444 Msa0673620:intron 55.0%
CGTCACTGTCCTACTCCAGA+GGG - chr4_4:20218437-20218456 None:intergenic 55.0%
ACGTCACTGTCCTACTCCAG+AGG - chr4_4:20218438-20218457 None:intergenic 55.0%
TCATGTGCCCCTCTGACCTT+TGG - chr4_4:20218614-20218633 None:intergenic 55.0%
! GGATGTGTCACTGCCGAAAG+AGG + chr4_4:20218678-20218697 Msa0673620:intron 55.0%
TTCCACGTGCTCTTGCACAC+TGG + chr4_4:20218703-20218722 Msa0673620:intron 55.0%
CAAGGCTGAACTTCGGGAAC+TGG - chr4_4:20219644-20219663 None:intergenic 55.0%
!! GAGTGCTGAGTTGACAAGGG+AGG + chr4_4:20219796-20219815 Msa0673620:intron 55.0%
GGGAGGGAGAGAAGTGACAT+TGG + chr4_4:20219813-20219832 Msa0673620:intron 55.0%
GGGAGAGAAGTGACATTGGC+TGG + chr4_4:20219817-20219836 Msa0673620:intron 55.0%
GCCAAGTTTCCCCTTGCAGT+CGG + chr4_4:20220820-20220839 Msa0673620:intron 55.0%
TCCGACTGCAAGGGGAAACT+TGG - chr4_4:20220824-20220843 None:intergenic 55.0%
GAAAACTCCAGAGGACGAGG+GGG - chr4_4:20221025-20221044 None:intergenic 55.0%
CGGTTGCCTCTAGTCTCTAC+TGG - chr4_4:20221214-20221233 None:intergenic 55.0%
TGTCGGAACTCAAGTGCGAG+TGG + chr4_4:20221437-20221456 Msa0673620:three_prime_UTR 55.0%
CGGAGAAGAGGATGTTGCGC+TGG + chr4_4:20214686-20214705 Msa0673620:intron 60.0%
CGGGGTGGTCCAATGGATCT+TGG - chr4_4:20218202-20218221 None:intergenic 60.0%
! CATCTAGAGTGTGACCGGGG+TGG - chr4_4:20218217-20218236 None:intergenic 60.0%
! GTCCAGTGTGCAAGAGCACG+TGG - chr4_4:20218708-20218727 None:intergenic 60.0%
AAGCGCCACAGCAGCGACTT+TGG - chr4_4:20219115-20219134 None:intergenic 60.0%
ATGGCAACACCCCCTGCACT+TGG - chr4_4:20219460-20219479 None:intergenic 60.0%
!! AAGTGCAGGGGGTGTTGCCA+TGG + chr4_4:20219459-20219478 Msa0673620:intron 60.0%
!! AGTGCAGGGGGTGTTGCCAT+GGG + chr4_4:20219460-20219479 Msa0673620:intron 60.0%
CGGAACTCAAGTGCGAGTGG+TGG + chr4_4:20221440-20221459 Msa0673620:three_prime_UTR 60.0%
GTGTGACCGGGGTGGTCCAA+TGG - chr4_4:20218209-20218228 None:intergenic 65.0%
!! GGGGTGTTGCCATGGGTAGC+TGG + chr4_4:20219467-20219486 Msa0673620:intron 65.0%
TCAGCTGCTGACGCTTGGGC+TGG + chr4_4:20220319-20220338 Msa0673620:CDS 65.0%
CAGCTGCTGACGCTTGGGCT+GGG + chr4_4:20220320-20220339 Msa0673620:CDS 65.0%
! GACGCTTGGGCTGGGACTCT+TGG + chr4_4:20220328-20220347 Msa0673620:CDS 65.0%
!! GGGGAAACTTGGCCTTGCCC+AGG - chr4_4:20220813-20220832 None:intergenic 65.0%
CCAGAGGACGAGGGGGTTGT+GGG - chr4_4:20221018-20221037 None:intergenic 65.0%
TCCAGAGGACGAGGGGGTTG+TGG - chr4_4:20221019-20221038 None:intergenic 65.0%
CCCACAACCCCCTCGTCCTC+TGG + chr4_4:20221015-20221034 Msa0673620:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 20213637 20221736 20213637 ID=Msa0673620;Name=Msa0673620
chr4_4 mRNA 20213637 20221736 20213637 ID=Msa0673620-mRNA-1;Parent=Msa0673620;Name=Msa0673620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=135|1|1|1|0.85|0.75|8|508|334
chr4_4 exon 20213637 20214201 20213637 ID=Msa0673620-mRNA-1:exon:5798;Parent=Msa0673620-mRNA-1
chr4_4 exon 20215779 20215831 20215779 ID=Msa0673620-mRNA-1:exon:5799;Parent=Msa0673620-mRNA-1
chr4_4 exon 20216027 20216119 20216027 ID=Msa0673620-mRNA-1:exon:5800;Parent=Msa0673620-mRNA-1
chr4_4 exon 20216781 20217004 20216781 ID=Msa0673620-mRNA-1:exon:5801;Parent=Msa0673620-mRNA-1
chr4_4 exon 20217513 20217579 20217513 ID=Msa0673620-mRNA-1:exon:5802;Parent=Msa0673620-mRNA-1
chr4_4 exon 20220281 20220391 20220281 ID=Msa0673620-mRNA-1:exon:5803;Parent=Msa0673620-mRNA-1
chr4_4 exon 20221182 20221461 20221182 ID=Msa0673620-mRNA-1:exon:5804;Parent=Msa0673620-mRNA-1
chr4_4 exon 20221482 20221736 20221482 ID=Msa0673620-mRNA-1:exon:5805;Parent=Msa0673620-mRNA-1
chr4_4 five_prime_UTR 20213637 20213771 20213637 ID=Msa0673620-mRNA-1:five_prime_utr;Parent=Msa0673620-mRNA-1
chr4_4 CDS 20213772 20214201 20213772 ID=Msa0673620-mRNA-1:cds;Parent=Msa0673620-mRNA-1
chr4_4 CDS 20215779 20215831 20215779 ID=Msa0673620-mRNA-1:cds;Parent=Msa0673620-mRNA-1
chr4_4 CDS 20216027 20216119 20216027 ID=Msa0673620-mRNA-1:cds;Parent=Msa0673620-mRNA-1
chr4_4 CDS 20216781 20217004 20216781 ID=Msa0673620-mRNA-1:cds;Parent=Msa0673620-mRNA-1
chr4_4 CDS 20217513 20217579 20217513 ID=Msa0673620-mRNA-1:cds;Parent=Msa0673620-mRNA-1
chr4_4 CDS 20220281 20220391 20220281 ID=Msa0673620-mRNA-1:cds;Parent=Msa0673620-mRNA-1
chr4_4 CDS 20221182 20221208 20221182 ID=Msa0673620-mRNA-1:cds;Parent=Msa0673620-mRNA-1
chr4_4 three_prime_UTR 20221209 20221461 20221209 ID=Msa0673620-mRNA-1:three_prime_utr;Parent=Msa0673620-mRNA-1
chr4_4 three_prime_UTR 20221482 20221736 20221482 ID=Msa0673620-mRNA-1:three_prime_utr;Parent=Msa0673620-mRNA-1
Gene Sequence

>Msa0673620

ATGCGCACTCTTTCATTTCCACCACCATGTCTATCATCTTCTTCATATTCTCTTCACACCAATAATAATAATCGATTATCCACCGCTTTTTCTTCTTACAAATGTTTTCATTTCTTAACACCACATTCATCACTCAAACAAACCAAAAAACAACCTAGTAGAATCAATAACACTGACCCATCTCGTTTAAAACGTTTGTTTAATCCCAAAAGTGAAAATGATGATGATAAAAATGATGATGATAAGAATAAGAAGAAGAAAAGAGGTGAATCTGAGAAAGAAGAGGAAGAGGATGATGGTGCTGCTTTAAAGGGTACCCTTTTGGCTGGTGTTTTGCTTGTTGGTTTTGTTGGTGGTTTTGCTTCTGTTGGGTATATTTACAGAGAGCCTATTAATACTTTCTTGAATCAATTCTCTGGCTTCATTGAAGGTTATGGTTCAGCTGGATATGCATTGTTTGTAGCTGTTTATGCTGGATTGGAGATCCTTGCAATTCCTGCCATTCCCTTAACCATGTCAGCCGGACTTCTTTTTGGATCCCTTACCGGCACCATCATAGTCTCTATCAGTGGAACAGTGGCGGCTAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGTATTCTAAAATTAGTGGAAGGGAATAAGAAGTTTCTTGCTATTGACAAAGCAATTGGAGAAAATGGCTTCAAGGTTGTTACCCTGCTTCGTTTGAGCCCTTTGCTGCCATTTTCTTTGGGGAATTATTTATATGGGTTGACATCTGTTAAGTTTCTTCCGTATGTACTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTTAGTGCTGGTGCTTTTGGAAGAGCAATAATACAAGAAGAATCTGAACTTAGTTCACTTGGAGGAAACAATCAGCTGCTGACGCTTGGGCTGGGACTCTTGGCCACTGCATTAGCTGCTACATATGTCACAAAGCTTGCAAAGGACGCTGTCAAAGACATCGACGACTAG

Protein sequence

>Msa0673620

MRTLSFPPPCLSSSSYSLHTNNNNRLSTAFSSYKCFHFLTPHSSLKQTKKQPSRINNTDPSRLKRLFNPKSENDDDKNDDDKNKKKKRGESEKEEEEDDGAALKGTLLAGVLLVGFVGGFASVGYIYREPINTFLNQFSGFIEGYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSLGNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESELSSLGGNNQLLTLGLGLLATALAATYVTKLAKDAVKDIDD*