AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382050 MtrunA17_Chr3g0136321 97.571 247 4 2 1 247 1 245 1.02e-173 478
Msa0382050 MtrunA17_Chr4g0000421 47.368 76 35 3 122 193 132 206 1.02e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382050 AT5G21920.1 60.656 183 60 2 52 234 64 234 7.84e-70 215
Msa0382050 AT5G21920.2 59.813 107 42 1 52 158 64 169 6.30e-36 125
Msa0382050 AT4G27990.1 50.000 78 34 3 122 195 135 211 2.39e-14 70.5
Msa0382050 AT3G07430.1 48.718 78 35 3 122 195 149 225 4.85e-14 69.7

Find 96 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATCTTGTTAAGATTATC+TGG 0.249074 3_1:-84509864 Msa0382050:five_prime_UTR
GCATGTATGTTCATTTAAAT+AGG 0.259403 3_1:-84507711 Msa0382050:three_prime_UTR
GAGTTGTGGAGGGGAGAAAT+TGG 0.307574 3_1:+84509667 None:intergenic
CATTCTTACAGAATAGAAAA+TGG 0.329472 3_1:-84509810 Msa0382050:exon
AGAGAGTAGTTTGTTTAAGA+AGG 0.343444 3_1:+84509577 None:intergenic
ATTATCGACGGCGTTGGAAA+TGG 0.365129 3_1:+84509637 None:intergenic
ACGGAGCTCAGACAGGATAA+TGG 0.369911 3_1:+84509839 None:intergenic
TTGAGAAAGGGGAATGCTAA+TGG 0.370536 3_1:+84509701 None:intergenic
GCTGGCTTAGTGGTGGCTAA+TGG 0.379478 3_1:-84509357 Msa0382050:CDS
AGCTAAGGAGTGGAGAAGTT+TGG 0.382379 3_1:+84509610 None:intergenic
TTACCTGGTGATTCCGTGGC+TGG 0.385685 3_1:-84509375 Msa0382050:CDS
GAGAGTAGTTTGTTTAAGAA+GGG 0.386231 3_1:+84509578 None:intergenic
ATGGATGTGGGGAGTTGTGG+AGG 0.386437 3_1:+84509656 None:intergenic
TGAGAAAGGGGAATGCTAAT+GGG 0.387303 3_1:+84509702 None:intergenic
CGATATGATTCTAATAAACT+TGG 0.390295 3_1:+84507604 None:intergenic
TAACCTGTAGGCACGTGTTA+TGG 0.398782 3_1:+84509540 None:intergenic
TCTGTGACTGGAAGCTCAGC+AGG 0.408614 3_1:+84507884 None:intergenic
GAAATGGATGTGGGGAGTTG+TGG 0.420790 3_1:+84509653 None:intergenic
TTACTTCTTCACAGAACAAA+TGG 0.426880 3_1:-84507814 Msa0382050:CDS
CTGCCATCGTTGCTCCTCTC+AGG 0.431185 3_1:-84509257 Msa0382050:intron
CGGAGCTCAGACAGGATAAT+GGG 0.435288 3_1:+84509840 None:intergenic
ACAACACCTTGCTCGTTGCC+AGG 0.436913 3_1:-84509311 Msa0382050:CDS
TTAAATAGTACGAGAATTCA+AGG 0.452730 3_1:+84507570 None:intergenic
TTGCCAGGCTTGTTCTTACC+TGG 0.458380 3_1:-84509296 Msa0382050:CDS
GAGGGGAGAAATTGGAGATG+GGG 0.461617 3_1:+84509675 None:intergenic
TGAGGCGGCTTCAAGGGATC+GGG 0.461867 3_1:-84507790 Msa0382050:CDS
TGATTCCGTGGCTGGCTTAG+TGG 0.463142 3_1:-84509367 Msa0382050:CDS
CCACGGAATACATTCAAATA+CGG 0.466648 3_1:+84507995 None:intergenic
ATGAGGCGGCTTCAAGGGAT+CGG 0.480718 3_1:-84507791 Msa0382050:CDS
AAATGGATGAGGCGGCTTCA+AGG 0.483527 3_1:-84507797 Msa0382050:CDS
AGGGGAGAAATTGGAGATGG+GGG 0.483831 3_1:+84509676 None:intergenic
ACGATGGCAGGAGGAGCGTT+AGG 0.485173 3_1:+84509270 None:intergenic
CAGAACAAGGAATGCAAGGA+TGG 0.486196 3_1:+84507937 None:intergenic
TGCTTAGATTGTTCTGTGAC+TGG 0.486287 3_1:+84507872 None:intergenic
AATGGATGAGGCGGCTTCAA+GGG 0.495750 3_1:-84507796 Msa0382050:CDS
GATGTTCTAATTTGCAGAAG+TGG 0.505099 3_1:+84507757 None:intergenic
GAGAAAGGGGAATGCTAATG+GGG 0.512370 3_1:+84509703 None:intergenic
AGAGTAGTTTGTTTAAGAAG+GGG 0.518070 3_1:+84509579 None:intergenic
GGAGGGGAGAAATTGGAGAT+GGG 0.518301 3_1:+84509674 None:intergenic
GACGGCGTTGGAAATGGATG+TGG 0.519771 3_1:+84509643 None:intergenic
CTGAGAGGAGCAACGATGGC+AGG 0.520472 3_1:+84509258 None:intergenic
GGAACAATTATCGACGGCGT+TGG 0.521064 3_1:+84509631 None:intergenic
ATTCCATAACACGTGCCTAC+AGG 0.524499 3_1:-84509543 Msa0382050:intron
TGGATGTGGGGAGTTGTGGA+GGG 0.527405 3_1:+84509657 None:intergenic
TGGAGGGGAGAAATTGGAGA+TGG 0.528680 3_1:+84509673 None:intergenic
CTTCGTTTCTGTATCAGTGG+TGG 0.539570 3_1:+84509760 None:intergenic
GTAACTACAGGAACAGTAGT+AGG 0.539864 3_1:-84509431 Msa0382050:CDS
TGCAGCAGCAGTGCTAGTGA+AGG 0.542097 3_1:+84507910 None:intergenic
AGGAGGAGCGTTAGGAAACC+AGG 0.547677 3_1:+84509278 None:intergenic
AAACCAGGTAAGAACAAGCC+TGG 0.548754 3_1:+84509293 None:intergenic
GAACTCTACGGAGCTCAGAC+AGG 0.548853 3_1:+84509832 None:intergenic
TTCACAGTTATCATAGTCCT+AGG 0.551523 3_1:-84507675 Msa0382050:three_prime_UTR
CTTCTTCGTTTCTGTATCAG+TGG 0.559382 3_1:+84509757 None:intergenic
CGTATTTGAATGTATTCCGT+GGG 0.560273 3_1:-84507994 Msa0382050:CDS
GCTCGAAAATTGTGTTGCCT+AGG 0.560477 3_1:+84507658 None:intergenic
AACAAGCCTGGCAACGAGCA+AGG 0.565234 3_1:+84509305 None:intergenic
GGCAAACACAAATAAAATGA+AGG 0.565813 3_1:+84507515 None:intergenic
TAGAAAATGGCCGTTATGAA+CGG 0.567715 3_1:-84509797 Msa0382050:exon
TAAATAGTACGAGAATTCAA+GGG 0.568271 3_1:+84507571 None:intergenic
CCGTATTTGAATGTATTCCG+TGG 0.568529 3_1:-84507995 Msa0382050:CDS
CACGGAATACATTCAAATAC+GGG 0.572341 3_1:+84507996 None:intergenic
AGATTCGGTGCAGTAACTAC+AGG 0.574341 3_1:-84509443 Msa0382050:CDS
GGATGTGGGGAGTTGTGGAG+GGG 0.574841 3_1:+84509658 None:intergenic
AGAGATCCAGTCCACCGAGA+GGG 0.575748 3_1:+84507963 None:intergenic
ATTCAAATACGGGTCACATA+CGG 0.577203 3_1:+84508006 None:intergenic
ACGGCGTTGGAAATGGATGT+GGG 0.580391 3_1:+84509644 None:intergenic
AGATCCAGTCCACCGAGAGG+GGG 0.582086 3_1:+84507965 None:intergenic
AGAACAAGGAATGCAAGGAT+GGG 0.585406 3_1:+84507938 None:intergenic
TAGTGAAGGCATTCAGAACA+AGG 0.586028 3_1:+84507924 None:intergenic
CATTCAGAACAAGGAATGCA+AGG 0.587879 3_1:+84507933 None:intergenic
CACAGAACAAATGGATGAGG+CGG 0.594547 3_1:-84507805 Msa0382050:CDS
AAGCCAGCCACGGAATCACC+AGG 0.598530 3_1:+84509372 None:intergenic
TTCTGTAAGAATGAACTCTA+CGG 0.599286 3_1:+84509820 None:intergenic
GTTCTAATTTGCAGAAGTGG+AGG 0.600682 3_1:+84507760 None:intergenic
GATCCAGTCCACCGAGAGGG+GGG 0.602974 3_1:+84507966 None:intergenic
TGTGAAGAAGTAACGTCGGT+AGG 0.608391 3_1:+84507824 None:intergenic
CTTCACAGAACAAATGGATG+AGG 0.621441 3_1:-84507808 Msa0382050:CDS
CGAGTCGCAACCGTTCATAA+CGG 0.621686 3_1:+84509787 None:intergenic
TTCCGTGGCTGGCTTAGTGG+TGG 0.624704 3_1:-84509364 Msa0382050:CDS
TGACCTGAGAGGAGCAACGA+TGG 0.624970 3_1:+84509254 None:intergenic
GAGATCCAGTCCACCGAGAG+GGG 0.626757 3_1:+84507964 None:intergenic
AGAGGAGCAACGATGGCAGG+AGG 0.633054 3_1:+84509261 None:intergenic
CTGTGACTGGAAGCTCAGCA+GGG 0.634111 3_1:+84507885 None:intergenic
GTCACAGAACAATCTAAGCA+AGG 0.634902 3_1:-84507869 Msa0382050:CDS
ACTACAGGAACAGTAGTAGG+TGG 0.635762 3_1:-84509428 Msa0382050:CDS
AGCCACCACTAAGCCAGCCA+CGG 0.636007 3_1:+84509362 None:intergenic
AAGTTTGGAACAATTATCGA+CGG 0.638484 3_1:+84509625 None:intergenic
TTAAATGAACATACATGCAG+AGG 0.640529 3_1:+84507716 None:intergenic
AAATAGTACGAGAATTCAAG+GGG 0.649880 3_1:+84507572 None:intergenic
GCACGTGTTATGGAATTGAG+AGG 0.651865 3_1:+84509550 None:intergenic
CGGCGTTGGAAATGGATGTG+GGG 0.658267 3_1:+84509645 None:intergenic
GAGAGATCCAGTCCACCGAG+AGG 0.664113 3_1:+84507962 None:intergenic
CTACAGGAACAGTAGTAGGT+GGG 0.671134 3_1:-84509427 Msa0382050:CDS
GTTCTGTGAAGAAGTAACGT+CGG 0.698371 3_1:+84507820 None:intergenic
AGAAATGTGACTGACCTGAG+AGG 0.708018 3_1:+84509243 None:intergenic
GGAATCACCAGGTAAAACAG+CGG 0.751307 3_1:+84509383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTCTATCAATATC+TGG + chr3_1:84508246-84508265 None:intergenic 15.0%
!! ATTGATAGAAAATTATAGAA+TGG - chr3_1:84508249-84508268 Msa0382050:intron 15.0%
!!! TCAAATATTTTCTACATAAA+TGG + chr3_1:84509173-84509192 None:intergenic 15.0%
!!! TATAATTTTCTATCAATATC+TGG + chr3_1:84508246-84508265 None:intergenic 15.0%
!! ATTGATAGAAAATTATAGAA+TGG - chr3_1:84508249-84508268 Msa0382050:intron 15.0%
!!! TCAAATATTTTCTACATAAA+TGG + chr3_1:84509173-84509192 None:intergenic 15.0%
!! ATAGAAAATTATAGAATGGT+TGG - chr3_1:84508253-84508272 Msa0382050:intron 20.0%
!!! TTTTTTTTTGTTGAAATGCA+AGG - chr3_1:84508341-84508360 Msa0382050:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_1:84508439-84508458 None:intergenic 20.0%
!! CATTAAATAATTAGCTACAT+TGG + chr3_1:84509325-84509344 None:intergenic 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_1:84509792-84509811 None:intergenic 20.0%
!! ATAGAAAATTATAGAATGGT+TGG - chr3_1:84508253-84508272 Msa0382050:intron 20.0%
!!! TTTTTTTTTGTTGAAATGCA+AGG - chr3_1:84508341-84508360 Msa0382050:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_1:84508439-84508458 None:intergenic 20.0%
!! CATTAAATAATTAGCTACAT+TGG + chr3_1:84509325-84509344 None:intergenic 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_1:84509792-84509811 None:intergenic 20.0%
! GTTATCTTGTTAAGATTATC+TGG - chr3_1:84507561-84507580 Msa0382050:three_prime_UTR 25.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_1:84507615-84507634 Msa0382050:three_prime_UTR 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_1:84508292-84508311 Msa0382050:intron 25.0%
!!! AATGTTTTTGTCACATGATA+TGG - chr3_1:84508506-84508525 Msa0382050:intron 25.0%
!!! ATGTTTTTGTCACATGATAT+GGG - chr3_1:84508507-84508526 Msa0382050:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG + chr3_1:84508534-84508553 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_1:84508562-84508581 Msa0382050:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_1:84508654-84508673 None:intergenic 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG - chr3_1:84508850-84508869 Msa0382050:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG - chr3_1:84508851-84508870 Msa0382050:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_1:84509050-84509069 None:intergenic 25.0%
! CGTAGATAGTTAAATTCTAT+TGG + chr3_1:84509217-84509236 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_1:84509248-84509267 None:intergenic 25.0%
! ACAACATACTCAGATTTAAT+TGG - chr3_1:84509349-84509368 Msa0382050:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_1:84509714-84509733 Msa0382050:CDS 25.0%
! CGATATGATTCTAATAAACT+TGG + chr3_1:84509824-84509843 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_1:84509857-84509876 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_1:84509858-84509877 None:intergenic 25.0%
! GTTATCTTGTTAAGATTATC+TGG - chr3_1:84507561-84507580 Msa0382050:three_prime_UTR 25.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_1:84507615-84507634 Msa0382050:three_prime_UTR 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_1:84508292-84508311 Msa0382050:intron 25.0%
!!! AATGTTTTTGTCACATGATA+TGG - chr3_1:84508506-84508525 Msa0382050:intron 25.0%
!!! ATGTTTTTGTCACATGATAT+GGG - chr3_1:84508507-84508526 Msa0382050:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG + chr3_1:84508534-84508553 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_1:84508562-84508581 Msa0382050:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_1:84508654-84508673 None:intergenic 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG - chr3_1:84508850-84508869 Msa0382050:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG - chr3_1:84508851-84508870 Msa0382050:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_1:84509050-84509069 None:intergenic 25.0%
! CGTAGATAGTTAAATTCTAT+TGG + chr3_1:84509217-84509236 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_1:84509248-84509267 None:intergenic 25.0%
! ACAACATACTCAGATTTAAT+TGG - chr3_1:84509349-84509368 Msa0382050:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_1:84509714-84509733 Msa0382050:CDS 25.0%
! CGATATGATTCTAATAAACT+TGG + chr3_1:84509824-84509843 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_1:84509857-84509876 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_1:84509858-84509877 None:intergenic 25.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_1:84507608-84507627 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_1:84507803-84507822 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_1:84507849-84507868 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_1:84507850-84507869 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_1:84507851-84507870 None:intergenic 30.0%
GAAAATTATAGAATGGTTGG+AGG - chr3_1:84508256-84508275 Msa0382050:intron 30.0%
TACAAAGATAGGTACCAATT+TGG + chr3_1:84508398-84508417 None:intergenic 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_1:84508454-84508473 Msa0382050:intron 30.0%
GTGACAAAAACATTAAGACA+GGG + chr3_1:84508500-84508519 None:intergenic 30.0%
TGTGACAAAAACATTAAGAC+AGG + chr3_1:84508501-84508520 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+TGG + chr3_1:84508535-84508554 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_1:84508712-84508731 Msa0382050:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG + chr3_1:84508844-84508863 None:intergenic 30.0%
ACATGTAAGTTCCATACTTA+AGG - chr3_1:84508922-84508941 Msa0382050:intron 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_1:84509046-84509065 Msa0382050:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_1:84509126-84509145 Msa0382050:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_1:84509178-84509197 Msa0382050:intron 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_1:84509611-84509630 Msa0382050:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_1:84509712-84509731 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_1:84509856-84509875 None:intergenic 30.0%
GGCAAACACAAATAAAATGA+AGG + chr3_1:84509913-84509932 None:intergenic 30.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_1:84507608-84507627 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_1:84507803-84507822 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_1:84507849-84507868 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_1:84507850-84507869 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_1:84507851-84507870 None:intergenic 30.0%
GAAAATTATAGAATGGTTGG+AGG - chr3_1:84508256-84508275 Msa0382050:intron 30.0%
TACAAAGATAGGTACCAATT+TGG + chr3_1:84508398-84508417 None:intergenic 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_1:84508454-84508473 Msa0382050:intron 30.0%
GTGACAAAAACATTAAGACA+GGG + chr3_1:84508500-84508519 None:intergenic 30.0%
TGTGACAAAAACATTAAGAC+AGG + chr3_1:84508501-84508520 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+TGG + chr3_1:84508535-84508554 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_1:84508712-84508731 Msa0382050:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG + chr3_1:84508844-84508863 None:intergenic 30.0%
ACATGTAAGTTCCATACTTA+AGG - chr3_1:84508922-84508941 Msa0382050:intron 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_1:84509046-84509065 Msa0382050:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_1:84509126-84509145 Msa0382050:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_1:84509178-84509197 Msa0382050:intron 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_1:84509611-84509630 Msa0382050:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_1:84509712-84509731 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_1:84509856-84509875 None:intergenic 30.0%
GGCAAACACAAATAAAATGA+AGG + chr3_1:84509913-84509932 None:intergenic 30.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_1:84507628-84507647 Msa0382050:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_1:84507900-84507919 None:intergenic 35.0%
CTAACATGTTAGTCACAATG+TGG - chr3_1:84508214-84508233 Msa0382050:intron 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_1:84508381-84508400 Msa0382050:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_1:84508395-84508414 None:intergenic 35.0%
! ACAAAGTCACGGACTAATTT+GGG + chr3_1:84508428-84508447 None:intergenic 35.0%
! AACAAAGTCACGGACTAATT+TGG + chr3_1:84508429-84508448 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_1:84508473-84508492 Msa0382050:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_1:84508608-84508627 Msa0382050:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_1:84508625-84508644 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_1:84508625-84508644 Msa0382050:intron 35.0%
!!! CACGAATTGTTTTTGGTCAT+TGG - chr3_1:84508719-84508738 Msa0382050:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_1:84508745-84508764 Msa0382050:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_1:84508746-84508765 Msa0382050:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_1:84508768-84508787 Msa0382050:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_1:84508774-84508793 Msa0382050:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG + chr3_1:84508845-84508864 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_1:84508863-84508882 Msa0382050:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_1:84509422-84509441 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_1:84509432-84509451 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_1:84509433-84509452 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_1:84509431-84509450 Msa0382050:CDS 35.0%
! GATGTTCTAATTTGCAGAAG+TGG + chr3_1:84509671-84509690 None:intergenic 35.0%
TTCACAGTTATCATAGTCCT+AGG - chr3_1:84509750-84509769 Msa0382050:CDS 35.0%
!!! TTTGAACGTGGCTTGTTTTA+AGG + chr3_1:84507516-84507535 None:intergenic 35.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_1:84507628-84507647 Msa0382050:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_1:84507900-84507919 None:intergenic 35.0%
CTAACATGTTAGTCACAATG+TGG - chr3_1:84508214-84508233 Msa0382050:intron 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_1:84508381-84508400 Msa0382050:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_1:84508395-84508414 None:intergenic 35.0%
! ACAAAGTCACGGACTAATTT+GGG + chr3_1:84508428-84508447 None:intergenic 35.0%
! AACAAAGTCACGGACTAATT+TGG + chr3_1:84508429-84508448 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_1:84508473-84508492 Msa0382050:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_1:84508608-84508627 Msa0382050:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_1:84508625-84508644 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_1:84508625-84508644 Msa0382050:intron 35.0%
!!! CACGAATTGTTTTTGGTCAT+TGG - chr3_1:84508719-84508738 Msa0382050:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_1:84508745-84508764 Msa0382050:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_1:84508746-84508765 Msa0382050:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_1:84508768-84508787 Msa0382050:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_1:84508774-84508793 Msa0382050:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG + chr3_1:84508845-84508864 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_1:84508863-84508882 Msa0382050:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_1:84509422-84509441 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_1:84509432-84509451 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_1:84509433-84509452 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_1:84509431-84509450 Msa0382050:CDS 35.0%
! GATGTTCTAATTTGCAGAAG+TGG + chr3_1:84509671-84509690 None:intergenic 35.0%
TTCACAGTTATCATAGTCCT+AGG - chr3_1:84509750-84509769 Msa0382050:CDS 35.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_1:84507528-84507547 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_1:84507526-84507545 Msa0382050:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_1:84507531-84507550 Msa0382050:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_1:84507671-84507690 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_1:84507686-84507705 Msa0382050:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_1:84507687-84507706 Msa0382050:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_1:84507688-84507707 Msa0382050:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_1:84507726-84507745 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_1:84507727-84507746 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_1:84507967-84507986 Msa0382050:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_1:84507994-84508013 Msa0382050:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_1:84508035-84508054 Msa0382050:intron 40.0%
AATGCACTGTTATCCACTCA+TGG + chr3_1:84508308-84508327 None:intergenic 40.0%
TTTGTTGAAATGCAAGGACG+TGG - chr3_1:84508347-84508366 Msa0382050:intron 40.0%
TTGTTGAAATGCAAGGACGT+GGG - chr3_1:84508348-84508367 Msa0382050:intron 40.0%
TGGGAGTAGCTTACAAAGAT+AGG + chr3_1:84508409-84508428 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_1:84508597-84508616 Msa0382050:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_1:84508598-84508617 Msa0382050:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_1:84508611-84508630 Msa0382050:intron 40.0%
CATTGGATCTTCCACTTTAG+TGG - chr3_1:84508736-84508755 Msa0382050:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_1:84508750-84508769 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_1:84508749-84508768 Msa0382050:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_1:84508866-84508885 Msa0382050:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_1:84508880-84508899 Msa0382050:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_1:84508881-84508900 Msa0382050:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_1:84508927-84508946 Msa0382050:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_1:84508928-84508947 Msa0382050:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_1:84508976-84508995 Msa0382050:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_1:84508977-84508996 Msa0382050:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_1:84509000-84509019 Msa0382050:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG - chr3_1:84509022-84509041 Msa0382050:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_1:84509188-84509207 Msa0382050:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_1:84509279-84509298 Msa0382050:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_1:84509430-84509449 Msa0382050:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_1:84509490-84509509 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_1:84509495-84509514 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_1:84509504-84509523 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_1:84509556-84509575 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_1:84509556-84509575 Msa0382050:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_1:84509608-84509627 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_1:84509617-84509636 Msa0382050:CDS 40.0%
! GTTCTAATTTGCAGAAGTGG+AGG + chr3_1:84509668-84509687 None:intergenic 40.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_1:84507528-84507547 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_1:84507526-84507545 Msa0382050:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_1:84507531-84507550 Msa0382050:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_1:84507671-84507690 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_1:84507686-84507705 Msa0382050:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_1:84507687-84507706 Msa0382050:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_1:84507688-84507707 Msa0382050:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_1:84507726-84507745 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_1:84507727-84507746 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_1:84507967-84507986 Msa0382050:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_1:84507994-84508013 Msa0382050:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_1:84508035-84508054 Msa0382050:intron 40.0%
AATGCACTGTTATCCACTCA+TGG + chr3_1:84508308-84508327 None:intergenic 40.0%
TTTGTTGAAATGCAAGGACG+TGG - chr3_1:84508347-84508366 Msa0382050:intron 40.0%
TTGTTGAAATGCAAGGACGT+GGG - chr3_1:84508348-84508367 Msa0382050:intron 40.0%
TGGGAGTAGCTTACAAAGAT+AGG + chr3_1:84508409-84508428 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_1:84508597-84508616 Msa0382050:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_1:84508598-84508617 Msa0382050:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_1:84508611-84508630 Msa0382050:intron 40.0%
CATTGGATCTTCCACTTTAG+TGG - chr3_1:84508736-84508755 Msa0382050:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_1:84508750-84508769 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_1:84508749-84508768 Msa0382050:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_1:84508866-84508885 Msa0382050:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_1:84508880-84508899 Msa0382050:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_1:84508881-84508900 Msa0382050:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_1:84508927-84508946 Msa0382050:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_1:84508928-84508947 Msa0382050:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_1:84508976-84508995 Msa0382050:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_1:84508977-84508996 Msa0382050:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_1:84509000-84509019 Msa0382050:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG - chr3_1:84509022-84509041 Msa0382050:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_1:84509188-84509207 Msa0382050:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_1:84509279-84509298 Msa0382050:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_1:84509430-84509449 Msa0382050:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_1:84509490-84509509 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_1:84509495-84509514 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_1:84509504-84509523 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_1:84509556-84509575 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_1:84509556-84509575 Msa0382050:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_1:84509608-84509627 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_1:84509617-84509636 Msa0382050:CDS 40.0%
! GTTCTAATTTGCAGAAGTGG+AGG + chr3_1:84509668-84509687 None:intergenic 40.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_1:84507668-84507687 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_1:84507725-84507744 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_1:84507738-84507757 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_1:84507739-84507758 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_1:84507791-84507810 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_1:84507818-84507837 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_1:84507828-84507847 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_1:84507833-84507852 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_1:84507878-84507897 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_1:84507882-84507901 Msa0382050:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_1:84507888-84507907 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_1:84507983-84508002 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_1:84507982-84508001 Msa0382050:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_1:84507997-84508016 Msa0382050:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_1:84507998-84508017 Msa0382050:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_1:84508045-84508064 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_1:84508046-84508065 Msa0382050:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_1:84508135-84508154 None:intergenic 45.0%
AGAAATGTGACTGACCTGAG+AGG + chr3_1:84508185-84508204 None:intergenic 45.0%
TGTTGAAATGCAAGGACGTG+GGG - chr3_1:84508349-84508368 Msa0382050:intron 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_1:84508936-84508955 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_1:84508939-84508958 Msa0382050:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_1:84508940-84508959 Msa0382050:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_1:84508957-84508976 Msa0382050:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_1:84508994-84509013 Msa0382050:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_1:84508999-84509018 Msa0382050:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_1:84509004-84509023 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_1:84509152-84509171 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_1:84509491-84509510 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_1:84509604-84509623 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_1:84509620-84509639 Msa0382050:CDS 45.0%
GCTCGAAAATTGTGTTGCCT+AGG + chr3_1:84509770-84509789 None:intergenic 45.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_1:84507668-84507687 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_1:84507725-84507744 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_1:84507738-84507757 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_1:84507739-84507758 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_1:84507791-84507810 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_1:84507818-84507837 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_1:84507828-84507847 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_1:84507833-84507852 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_1:84507878-84507897 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_1:84507882-84507901 Msa0382050:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_1:84507888-84507907 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_1:84507983-84508002 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_1:84507982-84508001 Msa0382050:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_1:84507997-84508016 Msa0382050:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_1:84507998-84508017 Msa0382050:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_1:84508045-84508064 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_1:84508046-84508065 Msa0382050:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_1:84508135-84508154 None:intergenic 45.0%
AGAAATGTGACTGACCTGAG+AGG + chr3_1:84508185-84508204 None:intergenic 45.0%
TGTTGAAATGCAAGGACGTG+GGG - chr3_1:84508349-84508368 Msa0382050:intron 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_1:84508936-84508955 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_1:84508939-84508958 Msa0382050:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_1:84508940-84508959 Msa0382050:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_1:84508957-84508976 Msa0382050:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_1:84508994-84509013 Msa0382050:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_1:84508999-84509018 Msa0382050:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_1:84509004-84509023 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_1:84509152-84509171 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_1:84509491-84509510 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_1:84509604-84509623 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_1:84509620-84509639 Msa0382050:CDS 45.0%
GCTCGAAAATTGTGTTGCCT+AGG + chr3_1:84509770-84509789 None:intergenic 45.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_1:84507588-84507607 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_1:84507589-84507608 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_1:84507641-84507660 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_1:84507740-84507759 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_1:84507752-84507771 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_1:84507753-84507772 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_1:84507754-84507773 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_1:84507755-84507774 None:intergenic 50.0%
GAGTTGTGGAGGGGAGAAAT+TGG + chr3_1:84507761-84507780 None:intergenic 50.0%
GAAATGGATGTGGGGAGTTG+TGG + chr3_1:84507775-84507794 None:intergenic 50.0%
! ACGGCGTTGGAAATGGATGT+GGG + chr3_1:84507784-84507803 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_1:84507797-84507816 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_1:84508129-84508148 Msa0382050:intron 50.0%
CAAGGACGTGGGGTTATTAG+TGG - chr3_1:84508359-84508378 Msa0382050:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_1:84508583-84508602 Msa0382050:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_1:84508949-84508968 Msa0382050:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_1:84508961-84508980 Msa0382050:intron 50.0%
! GGCTCCAATGCATTGACGAT+AGG + chr3_1:84509029-84509048 None:intergenic 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_1:84509143-84509162 Msa0382050:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_1:84509144-84509163 Msa0382050:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_1:84509191-84509210 Msa0382050:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_1:84509628-84509647 Msa0382050:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_1:84509629-84509648 Msa0382050:CDS 50.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_1:84507588-84507607 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_1:84507589-84507608 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_1:84507641-84507660 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_1:84507740-84507759 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_1:84507752-84507771 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_1:84507753-84507772 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_1:84507754-84507773 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_1:84507755-84507774 None:intergenic 50.0%
GAGTTGTGGAGGGGAGAAAT+TGG + chr3_1:84507761-84507780 None:intergenic 50.0%
GAAATGGATGTGGGGAGTTG+TGG + chr3_1:84507775-84507794 None:intergenic 50.0%
! ACGGCGTTGGAAATGGATGT+GGG + chr3_1:84507784-84507803 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_1:84507797-84507816 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_1:84508129-84508148 Msa0382050:intron 50.0%
CAAGGACGTGGGGTTATTAG+TGG - chr3_1:84508359-84508378 Msa0382050:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_1:84508583-84508602 Msa0382050:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_1:84508949-84508968 Msa0382050:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_1:84508961-84508980 Msa0382050:intron 50.0%
! GGCTCCAATGCATTGACGAT+AGG + chr3_1:84509029-84509048 None:intergenic 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_1:84509143-84509162 Msa0382050:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_1:84509144-84509163 Msa0382050:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_1:84509191-84509210 Msa0382050:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_1:84509628-84509647 Msa0382050:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_1:84509629-84509648 Msa0382050:CDS 50.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_1:84507596-84507615 None:intergenic 55.0%
TGGATGTGGGGAGTTGTGGA+GGG + chr3_1:84507771-84507790 None:intergenic 55.0%
ATGGATGTGGGGAGTTGTGG+AGG + chr3_1:84507772-84507791 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGTG+GGG + chr3_1:84507783-84507802 None:intergenic 55.0%
! GACGGCGTTGGAAATGGATG+TGG + chr3_1:84507785-84507804 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_1:84508050-84508069 Msa0382050:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_1:84508058-84508077 Msa0382050:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_1:84508068-84508087 Msa0382050:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_1:84508114-84508133 Msa0382050:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_1:84508123-84508142 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_1:84508150-84508169 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_1:84508174-84508193 None:intergenic 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_1:84508948-84508967 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_1:84509465-84509484 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_1:84509518-84509537 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG + chr3_1:84509543-84509562 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG + chr3_1:84509544-84509563 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_1:84509634-84509653 Msa0382050:CDS 55.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_1:84507596-84507615 None:intergenic 55.0%
TGGATGTGGGGAGTTGTGGA+GGG + chr3_1:84507771-84507790 None:intergenic 55.0%
ATGGATGTGGGGAGTTGTGG+AGG + chr3_1:84507772-84507791 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGTG+GGG + chr3_1:84507783-84507802 None:intergenic 55.0%
! GACGGCGTTGGAAATGGATG+TGG + chr3_1:84507785-84507804 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_1:84508050-84508069 Msa0382050:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_1:84508058-84508077 Msa0382050:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_1:84508068-84508087 Msa0382050:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_1:84508114-84508133 Msa0382050:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_1:84508123-84508142 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_1:84508150-84508169 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_1:84508174-84508193 None:intergenic 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_1:84508948-84508967 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_1:84509465-84509484 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_1:84509518-84509537 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG + chr3_1:84509543-84509562 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG + chr3_1:84509544-84509563 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_1:84509634-84509653 Msa0382050:CDS 55.0%
GGATGTGGGGAGTTGTGGAG+GGG + chr3_1:84507770-84507789 None:intergenic 60.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_1:84508056-84508075 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_1:84508061-84508080 Msa0382050:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_1:84508066-84508085 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_1:84508158-84508177 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_1:84508167-84508186 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_1:84508170-84508189 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_1:84508168-84508187 Msa0382050:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_1:84508943-84508962 Msa0382050:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_1:84509463-84509482 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_1:84509464-84509483 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_1:84509466-84509485 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_1:84509635-84509654 Msa0382050:CDS 60.0%
GGATGTGGGGAGTTGTGGAG+GGG + chr3_1:84507770-84507789 None:intergenic 60.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_1:84508056-84508075 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_1:84508061-84508080 Msa0382050:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_1:84508066-84508085 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_1:84508158-84508177 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_1:84508167-84508186 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_1:84508170-84508189 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_1:84508168-84508187 Msa0382050:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_1:84508943-84508962 Msa0382050:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_1:84509463-84509482 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_1:84509464-84509483 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_1:84509466-84509485 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_1:84509635-84509654 Msa0382050:CDS 60.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_1:84509450-84509469 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_1:84509448-84509467 Msa0382050:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_1:84509456-84509475 Msa0382050:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_1:84509462-84509481 None:intergenic 65.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_1:84509450-84509469 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_1:84509448-84509467 Msa0382050:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_1:84509456-84509475 Msa0382050:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_1:84509462-84509481 None:intergenic 65.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_1:84509451-84509470 Msa0382050:intron 70.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_1:84509451-84509470 Msa0382050:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84507515 84509932 84507515 ID=Msa0382050;Name=Msa0382050
chr3_1 mRNA 84507515 84509932 84507515 ID=Msa0382050-mRNA-1;Parent=Msa0382050;Name=Msa0382050-mRNA-1;_AED=0.18;_eAED=0.18;_QI=119|1|1|1|1|1|3|248|247
chr3_1 exon 84507515 84508030 84507515 ID=Msa0382050-mRNA-1:exon:22012;Parent=Msa0382050-mRNA-1
chr3_1 exon 84509258 84509463 84509258 ID=Msa0382050-mRNA-1:exon:22011;Parent=Msa0382050-mRNA-1
chr3_1 exon 84509544 84509932 84509544 ID=Msa0382050-mRNA-1:exon:22010;Parent=Msa0382050-mRNA-1
chr3_1 five_prime_UTR 84509814 84509932 84509814 ID=Msa0382050-mRNA-1:five_prime_utr;Parent=Msa0382050-mRNA-1
chr3_1 CDS 84509544 84509813 84509544 ID=Msa0382050-mRNA-1:cds;Parent=Msa0382050-mRNA-1
chr3_1 CDS 84509258 84509463 84509258 ID=Msa0382050-mRNA-1:cds;Parent=Msa0382050-mRNA-1
chr3_1 CDS 84507763 84508030 84507763 ID=Msa0382050-mRNA-1:cds;Parent=Msa0382050-mRNA-1
chr3_1 three_prime_UTR 84507515 84507762 84507515 ID=Msa0382050-mRNA-1:three_prime_utr;Parent=Msa0382050-mRNA-1
Gene Sequence

>Msa0382050

ATGGCCGTTATGAACGGTTGCGACTCGTTGTCCACCACTGATACAGAAACGAAGAAGAACGTCTCGTTTTGTTGGGGTAATTCTCAATCCCCATTAGCATTCCCCTTTCTCAAATCCCCCATCTCCAATTTCTCCCCTCCACAACTCCCCACATCCATTTCCAACGCCGTCGATAATTGTTCCAAACTTCTCCACTCCTTAGCTTCTCAAAACCCCTTCTTAAACAAACTACTCTCTCTTTCCTCTCAATTCCATAACACGTGCCTACAGATTCGGTGCAGTAACTACAGGAACAGTAGTAGGTGGGTGAGTAATCATCACAATTTTGCCGCTGTTTTACCTGGTGATTCCGTGGCTGGCTTAGTGGTGGCTAATGGACTTAATAATTTCTTGAGTCTTTACAACACCTTGCTCGTTGCCAGGCTTGTTCTTACCTGGTTTCCTAACGCTCCTCCTGCCATCGTTGCTCCTCTCAGCACCGTATGTGACCCGTATTTGAATGTATTCCGTGGGCTTATCCCCCCTCTCGGTGGACTGGATCTCTCTCCCATCCTTGCATTCCTTGTTCTGAATGCCTTCACTAGCACTGCTGCTGCACTCCCTGCTGAGCTTCCAGTCACAGAACAATCTAAGCAAGGTCTTGAAGCAAGATTACAACAACCTACCGACGTTACTTCTTCACAGAACAAATGGATGAGGCGGCTTCAAGGGATCGGGTCAAAGACCTCCACTTCTGCAAATTAG

Protein sequence

>Msa0382050

MAVMNGCDSLSTTDTETKKNVSFCWGNSQSPLAFPFLKSPISNFSPPQLPTSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHNTCLQIRCSNYRNSSRWVSNHHNFAAVLPGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRRLQGIGSKTSTSAN*