AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0851970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851970 MtrunA17_Chr5g0428351 95.816 239 7 2 1 239 78 313 3.06e-169 469
Msa0851970 MtrunA17_Chr3g0128671 42.912 261 98 12 20 237 23 275 6.54e-48 160
Msa0851970 MtrunA17_Chr7g0244981 38.793 232 111 9 1 204 1 229 3.49e-40 139
Msa0851970 MtrunA17_Chr7g0244971 41.341 179 89 4 4 167 5 182 5.03e-38 134
Msa0851970 MtrunA17_Chr8g0334541 42.138 159 86 3 15 168 6 163 5.33e-34 123
Msa0851970 MtrunA17_Chr8g0350621 39.634 164 87 5 15 167 8 170 3.56e-31 115
Msa0851970 MtrunA17_Chr2g0315371 29.302 215 121 5 5 188 7 221 9.60e-24 96.7
Msa0851970 MtrunA17_Chr2g0315361 40.833 120 66 3 92 206 131 250 9.91e-24 97.1
Msa0851970 MtrunA17_Chr2g0315381 40.816 98 57 1 92 188 127 224 5.06e-23 95.1
Msa0851970 MtrunA17_Chr7g0275531 33.714 175 94 7 10 167 8 177 8.73e-23 94.7
Msa0851970 MtrunA17_Chr8g0347251 50.685 73 36 0 101 173 129 201 2.01e-20 88.6
Msa0851970 MtrunA17_Chr3g0126391 30.890 191 94 6 12 167 5 192 2.39e-18 82.4
Msa0851970 MtrunA17_Chr8g0387981 29.834 181 101 4 13 167 11 191 2.21e-17 80.1
Msa0851970 MtrunA17_Chr4g0071521 44.048 84 38 2 89 165 219 300 1.21e-14 72.0
Msa0851970 MtrunA17_Chr8g0387501 50.769 65 30 1 101 165 122 184 2.73e-14 70.5
Msa0851970 MtrunA17_Chr1g0147881 44.048 84 38 3 89 165 236 317 4.67e-14 70.5
Msa0851970 MtrunA17_Chr7g0224801 50.000 58 26 1 109 166 94 148 1.21e-13 67.0
Msa0851970 MtrunA17_Chr5g0401821 42.683 82 45 1 84 165 175 254 1.87e-13 68.2
Msa0851970 MtrunA17_Chr5g0418781 31.944 144 81 6 73 212 91 221 1.53e-12 65.5
Msa0851970 MtrunA17_Chr5g0431811 39.189 74 41 1 109 182 673 742 2.96e-12 65.9
Msa0851970 MtrunA17_Chr1g0184691 39.535 86 50 1 86 171 271 354 3.02e-12 65.5
Msa0851970 MtrunA17_Chr4g0053281 40.964 83 47 1 83 165 241 321 3.03e-12 65.1
Msa0851970 MtrunA17_Chr1g0202461 41.250 80 40 2 91 165 239 316 3.40e-12 65.1
Msa0851970 MtrunA17_Chr2g0284321 44.444 63 33 1 109 171 36 96 3.78e-12 63.5
Msa0851970 MtrunA17_Chr4g0051881 36.047 86 52 1 107 192 177 259 7.13e-12 63.9
Msa0851970 MtrunA17_Chr8g0348311 47.541 61 30 1 109 169 156 214 1.08e-11 63.5
Msa0851970 MtrunA17_Chr8g0379461 44.928 69 35 2 109 177 77 142 1.33e-11 62.4
Msa0851970 MtrunA17_Chr1g0150281 45.763 59 30 1 107 165 139 195 1.56e-11 62.8
Msa0851970 MtrunA17_Chr7g0238921 46.032 63 31 1 109 171 125 184 1.70e-11 62.8
Msa0851970 MtrunA17_Chr4g0001361 38.889 108 55 4 91 189 142 247 2.76e-11 62.4
Msa0851970 MtrunA17_Chr8g0386241 37.333 75 43 2 109 183 104 174 3.13e-11 60.5
Msa0851970 MtrunA17_Chr2g0293481 33.333 135 71 4 43 165 195 322 3.32e-11 62.4
Msa0851970 MtrunA17_Chr3g0079691 38.235 68 38 2 109 176 281 344 4.75e-11 62.4
Msa0851970 MtrunA17_Chr1g0194481 44.828 58 29 1 109 166 159 213 5.11e-11 61.6
Msa0851970 MtrunA17_Chr5g0443131 31.405 121 76 4 107 225 156 271 6.11e-11 61.2
Msa0851970 MtrunA17_Chr2g0319961 36.842 114 46 4 63 165 37 135 9.77e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851970 AT3G56400.1 39.556 225 101 8 1 199 1 216 1.28e-41 144
Msa0851970 AT2G40750.1 36.283 226 88 9 2 178 4 222 5.62e-34 125
Msa0851970 AT1G66550.1 34.234 222 126 9 15 221 10 226 7.97e-26 101
Msa0851970 AT5G01900.1 38.095 168 82 5 15 167 9 169 3.38e-25 100
Msa0851970 AT1G66550.2 32.751 229 115 9 15 221 10 221 1.05e-24 98.6
Msa0851970 AT2G46400.1 28.571 238 149 7 9 233 3 232 1.16e-23 96.7
Msa0851970 AT1G66600.1 31.674 221 127 6 15 221 10 220 1.93e-23 95.1
Msa0851970 AT2G40740.1 45.361 97 42 3 91 176 147 243 8.05e-22 91.7
Msa0851970 AT2G40740.3 45.361 97 42 3 91 176 156 252 9.20e-22 91.7
Msa0851970 AT5G22570.1 33.908 174 105 3 15 182 11 180 2.28e-21 90.5
Msa0851970 AT5G24110.1 32.597 181 94 5 11 176 14 181 3.50e-21 90.1
Msa0851970 AT1G66560.1 31.193 218 129 7 12 215 7 217 4.92e-21 89.0
Msa0851970 AT1G80590.1 32.544 169 91 3 15 181 10 157 1.59e-19 84.7
Msa0851970 AT4G11070.2 32.335 167 99 5 11 168 8 169 9.85e-19 83.2
Msa0851970 AT4G23810.1 39.474 114 59 3 109 218 159 266 2.53e-18 82.8
Msa0851970 AT4G11070.1 53.333 60 28 0 109 168 142 201 1.48e-17 80.5
Msa0851970 AT5G45260.1 42.308 78 42 1 91 165 1188 1265 4.01e-15 74.7
Msa0851970 AT4G31550.1 41.860 86 48 1 83 168 221 304 1.57e-13 69.3
Msa0851970 AT1G29280.1 46.377 69 35 1 109 177 75 141 2.95e-13 67.8
Msa0851970 AT4G31550.2 41.176 85 48 1 84 168 221 303 9.28e-13 67.0
Msa0851970 AT5G52830.1 33.835 133 67 6 109 227 166 291 2.09e-12 66.2
Msa0851970 AT2G23320.1 40.909 88 43 2 85 165 210 295 4.27e-12 65.1
Msa0851970 AT4G23550.1 38.298 94 51 3 107 199 139 226 6.32e-12 64.3
Msa0851970 AT2G24570.1 39.759 83 48 1 83 165 218 298 1.17e-11 63.9
Msa0851970 AT4G31800.2 44.444 63 33 1 103 165 106 166 1.30e-11 62.8
Msa0851970 AT5G49520.1 46.552 58 28 1 109 166 222 276 1.35e-11 63.9
Msa0851970 AT4G31800.1 44.444 63 33 1 103 165 171 231 1.39e-11 63.5
Msa0851970 AT5G13080.1 44.828 58 29 1 109 166 68 122 1.40e-11 60.8
Msa0851970 AT3G58710.2 36.522 115 57 4 57 165 21 125 1.76e-11 62.8
Msa0851970 AT2G04880.2 26.994 163 111 3 14 171 184 343 2.31e-11 63.5
Msa0851970 AT3G01970.1 44.828 58 29 1 109 166 66 120 2.63e-11 60.5
Msa0851970 AT2G04880.1 28.105 153 102 3 24 171 218 367 3.19e-11 63.2
Msa0851970 AT2G30590.1 39.024 82 48 1 84 165 289 368 3.23e-11 62.8
Msa0851970 AT4G01250.1 35.354 99 60 3 69 165 87 183 3.41e-11 62.4
Msa0851970 AT2G46130.1 38.462 91 45 3 75 165 5 84 3.84e-11 58.9
Msa0851970 AT1G30650.1 39.000 100 43 4 78 165 179 272 4.95e-11 62.4
Msa0851970 AT2G25000.2 42.466 73 39 2 104 176 99 168 5.14e-11 61.2
Msa0851970 AT2G25000.4 42.466 73 39 2 104 176 99 168 5.14e-11 61.2
Msa0851970 AT3G58710.1 37.069 116 56 5 57 165 21 126 6.66e-11 61.2
Msa0851970 AT2G25000.1 42.466 73 39 2 104 176 142 211 8.26e-11 60.8
Msa0851970 AT2G25000.3 41.892 74 40 2 103 176 120 190 8.65e-11 60.8
Msa0851970 AT1G69310.4 43.750 64 32 2 107 170 146 205 8.88e-11 60.8
Msa0851970 AT1G69310.2 43.750 64 32 2 107 170 146 205 8.88e-11 60.8
Msa0851970 AT1G69310.1 43.750 64 32 2 107 170 146 205 8.88e-11 60.8
Msa0851970 AT2G34830.1 48.148 54 26 1 112 165 219 270 9.14e-11 61.6
Msa0851970 AT2G37260.1 35.294 85 52 1 81 165 322 403 9.34e-11 61.6
Msa0851970 AT1G64000.1 43.860 57 29 1 109 165 115 168 9.54e-11 59.7

Find 78 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTATCACTACAAATTA+AGG 0.130880 5_4:-42676285 Msa0851970:three_prime_UTR
CAAAATCTAGCACTGGAATT+TGG 0.136957 5_4:-42676421 Msa0851970:CDS
TGTTGCTTTGGTAAATCTTT+AGG 0.163085 5_4:-42676018 Msa0851970:three_prime_UTR
ACTTTCTTTCTAACACTTTC+AGG 0.226424 5_4:+42680064 None:intergenic
ATGATAAGTTAAACAAATTC+AGG 0.241556 5_4:-42675981 Msa0851970:three_prime_UTR
AAAATCTAGCACTGGAATTT+GGG 0.252381 5_4:-42676420 Msa0851970:CDS
AATCATTCATGGAGAAAGTA+TGG 0.268191 5_4:-42677702 Msa0851970:CDS
TCATTAGAAGTACTTGCTTT+AGG 0.273585 5_4:+42676577 None:intergenic
GTTGCTTTGGTAAATCTTTA+GGG 0.281655 5_4:-42676017 Msa0851970:three_prime_UTR
TTTGCACCTGTTTGGTTGCT+GGG 0.311084 5_4:+42676665 None:intergenic
TCTTCTGCTTCTGTTATGAT+TGG 0.320425 5_4:-42676092 Msa0851970:three_prime_UTR
AAGTGTTCATTATTTCTCTA+AGG 0.323403 5_4:-42680269 Msa0851970:five_prime_UTR
CTGAAGAAGAATCTTGAGTT+TGG 0.329999 5_4:+42680003 None:intergenic
AATGATTATCAACAATGGTT+TGG 0.347556 5_4:+42677718 None:intergenic
AAATCATCACAACTTGAGTT+TGG 0.348658 5_4:+42679899 None:intergenic
TGAGGGAAGAGGAGAGAAGA+TGG 0.354426 5_4:+42680179 None:intergenic
ATGATTATCAACAATGGTTT+GGG 0.360761 5_4:+42677719 None:intergenic
TCTGTTATGATTGGAAGAAT+TGG 0.366694 5_4:-42676083 Msa0851970:three_prime_UTR
CCATTGTTGATAATCATTCA+TGG 0.368964 5_4:-42677713 Msa0851970:CDS
AGAGGTGGAGGAGGTAAGGA+AGG 0.377323 5_4:-42675927 Msa0851970:three_prime_UTR
TATTTATCACTACAAATTAA+GGG 0.383213 5_4:-42676284 Msa0851970:three_prime_UTR
GATAATCAAAGAACTTGTTA+AGG 0.389804 5_4:-42680041 Msa0851970:CDS
GGAAGAGTGCAGCTGAGATA+TGG 0.391667 5_4:-42677752 Msa0851970:CDS
AACAATGGTTTGGGAAACTA+TGG 0.395929 5_4:+42677728 None:intergenic
CTGTTATGATTGGAAGAATT+GGG 0.399687 5_4:-42676082 Msa0851970:three_prime_UTR
ACACAATAGGTGTGTGGCGA+TGG 0.402805 5_4:-42675902 None:intergenic
AGTAGGTGGGTGTTGTTTGA+GGG 0.407885 5_4:+42680162 None:intergenic
AGAAACTCCGAGTAATGTTA+TGG 0.412327 5_4:-42676479 Msa0851970:CDS
AAGGAGAGGTGGAGGAGGTA+AGG 0.418391 5_4:-42675931 Msa0851970:three_prime_UTR
TAGTAGGTGGGTGTTGTTTG+AGG 0.425768 5_4:+42680161 None:intergenic
AAGGAGGATGTATGTTGCTT+TGG 0.428733 5_4:-42676030 Msa0851970:three_prime_UTR
ATTAGTGAAAGTAGAAAGAA+GGG 0.442638 5_4:-42679848 Msa0851970:CDS
CTTTCTTTCTAACACTTTCA+GGG 0.446465 5_4:+42680065 None:intergenic
TACCTCACAGGAGTTACTTC+AGG 0.451478 5_4:-42676714 Msa0851970:intron
CAAATTCAGGGTATTGTCGC+TGG 0.454913 5_4:-42675968 Msa0851970:three_prime_UTR
AGGTGGAGGAGGTAAGGAAG+GGG 0.455461 5_4:-42675925 Msa0851970:three_prime_UTR
AATTAGTGAAAGTAGAAAGA+AGG 0.462260 5_4:-42679849 Msa0851970:CDS
GGTAAGGAAGGGGACACAAT+AGG 0.464902 5_4:-42675915 Msa0851970:three_prime_UTR
TGGGTGTTGTTTGAGGGAAG+AGG 0.471972 5_4:+42680168 None:intergenic
TATGTAGTTTGATACATGTC+AGG 0.475973 5_4:+42676628 None:intergenic
TTTATAGTTAGGCTTGGTGT+TGG 0.476623 5_4:+42676520 None:intergenic
GAGGTGGAGGAGGTAAGGAA+GGG 0.485435 5_4:-42675926 Msa0851970:three_prime_UTR
GAGGGAAGAGGAGAGAAGAT+GGG 0.490627 5_4:+42680180 None:intergenic
ATAATCAAAGAACTTGTTAA+GGG 0.491966 5_4:-42680040 Msa0851970:CDS
GAAGAGGTTGCTACAAAAGA+AGG 0.499456 5_4:-42679823 Msa0851970:intron
AGGTTGCCCAGCAACCAAAC+AGG 0.515216 5_4:-42676671 Msa0851970:CDS
ATCATAACAGAAGCAGAAGA+AGG 0.518599 5_4:+42676095 None:intergenic
TCAGGGTATTGTCGCTGGAT+AGG 0.523072 5_4:-42675963 Msa0851970:three_prime_UTR
TTGCTTGATGTTATTAGCAA+GGG 0.526424 5_4:-42676134 Msa0851970:three_prime_UTR
CTTCAGAACGAGAATCCCTA+TGG 0.526631 5_4:-42679986 Msa0851970:CDS
AGTAGAAAGAAGGGAAGAAG+AGG 0.527985 5_4:-42679839 Msa0851970:CDS
TAAAGCAAGTACTTCTAATG+AGG 0.529120 5_4:-42676575 Msa0851970:CDS
GTTGCTTGATGTTATTAGCA+AGG 0.529152 5_4:-42676135 Msa0851970:three_prime_UTR
AGTGTTTCAAAATCTAGCAC+TGG 0.543569 5_4:-42676428 Msa0851970:CDS
TGATAAGTTAAACAAATTCA+GGG 0.552622 5_4:-42675980 Msa0851970:three_prime_UTR
GTATGGGCAGAAGAAAATCA+TGG 0.554126 5_4:-42677685 Msa0851970:CDS
AGCAAGATGATCAGCTCCAT+AGG 0.557040 5_4:+42679970 None:intergenic
CCATGAATGATTATCAACAA+TGG 0.572348 5_4:+42677713 None:intergenic
TCATGGATTCTGAATTCCCC+AGG 0.575030 5_4:-42677668 Msa0851970:intron
AATCAAATGAATGCAAATGA+TGG 0.576535 5_4:+42680217 None:intergenic
AAATCTAGCACTGGAATTTG+GGG 0.581436 5_4:-42676419 Msa0851970:CDS
TAGGAGTGGCGTTGCATGTG+TGG 0.582787 5_4:+42676596 None:intergenic
TGTTCACATAAAGATGATCA+AGG 0.588485 5_4:-42676691 Msa0851970:CDS
GCAAGATGATCAGCTCCATA+GGG 0.589366 5_4:+42679971 None:intergenic
ATCATTCATGGAGAAAGTAT+GGG 0.593517 5_4:-42677701 Msa0851970:CDS
TCACATTCCATAACATTACT+CGG 0.594141 5_4:+42676472 None:intergenic
ATGTATCAAACTACATACAT+TGG 0.596361 5_4:-42676622 Msa0851970:CDS
TTGCTTTGGTAAATCTTTAG+GGG 0.600494 5_4:-42676016 Msa0851970:three_prime_UTR
AGAAGTACTTGCTTTAGGAG+TGG 0.607162 5_4:+42676582 None:intergenic
TGGTAACGCAGATGTGGTCA+AGG 0.612777 5_4:-42676049 Msa0851970:three_prime_UTR
AAGGTGCTTAAACGCAAATG+TGG 0.642263 5_4:-42676172 Msa0851970:three_prime_UTR
AAGAATTGGGTGGTGCTGCA+TGG 0.653989 5_4:-42676069 Msa0851970:three_prime_UTR
GCTGCATGGTAACGCAGATG+TGG 0.670107 5_4:-42676055 Msa0851970:three_prime_UTR
AAGGGGACACAATAGGTGTG+TGG 0.683944 5_4:-42675908 Msa0851970:three_prime_UTR
TCTCCGAATTCTGAAAACGA+AGG 0.688104 5_4:-42676191 Msa0851970:three_prime_UTR
CGTGCTGAGATCTTTCACTG+AGG 0.697606 5_4:-42679942 Msa0851970:CDS
TAACGCAGATGTGGTCAAGG+AGG 0.699406 5_4:-42676046 Msa0851970:three_prime_UTR
TTATGATTGGAAGAATTGGG+TGG 0.721425 5_4:-42676079 Msa0851970:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTATAATAGGA+GGG + chr5_4:42675933-42675952 None:intergenic 10.0%
!!! TTTTTTTTTTTTATAATAGG+AGG + chr5_4:42675934-42675953 None:intergenic 10.0%
!!! TTTTTTCTTGGAAAATTAAA+AGG - chr5_4:42676087-42676106 Msa0851970:three_prime_UTR 15.0%
!!! TTTTTCTTGGAAAATTAAAA+GGG - chr5_4:42676088-42676107 Msa0851970:three_prime_UTR 15.0%
!!! TAAGCAAAAATCAATTTTTT+AGG - chr5_4:42676739-42676758 Msa0851970:intron 15.0%
!!! TTTTTGCTTATAATAGTAAT+CGG - chr5_4:42676808-42676827 Msa0851970:intron 15.0%
!!! ACTTTATTTTTTTTTAAGAG+TGG + chr5_4:42676881-42676900 None:intergenic 15.0%
!! TTAAAAAAATAAACAAGTGA+AGG - chr5_4:42677256-42677275 Msa0851970:intron 15.0%
!! AAAGTAGAATATATTCAATA+TGG - chr5_4:42677341-42677360 Msa0851970:intron 15.0%
!! TATTACATTGAAAATTGAAA+TGG - chr5_4:42677416-42677435 Msa0851970:intron 15.0%
!! ATTACATTGAAAATTGAAAT+GGG - chr5_4:42677417-42677436 Msa0851970:intron 15.0%
!! CTAATTATAAGGTTAAATTA+CGG + chr5_4:42677588-42677607 None:intergenic 15.0%
!! ACTAATGTATACTAATTATA+AGG + chr5_4:42677599-42677618 None:intergenic 15.0%
!!! TAATTTTGACAATGTATAAT+TGG + chr5_4:42677951-42677970 None:intergenic 15.0%
!!! AAGTACTATTTTATAGATTT+TGG - chr5_4:42678374-42678393 Msa0851970:intron 15.0%
!!! AAAATAAAAAGTTTGGTTTT+TGG + chr5_4:42678855-42678874 None:intergenic 15.0%
!! CAGTTAAAAAATAAAAAGTT+TGG + chr5_4:42678862-42678881 None:intergenic 15.0%
!! AATTTCTAATTATGACATTT+GGG + chr5_4:42679133-42679152 None:intergenic 15.0%
!! AAATTTCTAATTATGACATT+TGG + chr5_4:42679134-42679153 None:intergenic 15.0%
!! AACCATTTATAATAAAAACA+CGG - chr5_4:42679215-42679234 Msa0851970:intron 15.0%
!! TGGCTAAAAAAAAAAAAAAT+GGG + chr5_4:42679246-42679265 None:intergenic 15.0%
!! TTGGCTAAAAAAAAAAAAAA+TGG + chr5_4:42679247-42679266 None:intergenic 15.0%
!! TTATTTATCACTACAAATTA+AGG - chr5_4:42679937-42679956 Msa0851970:CDS 15.0%
!! TATTTATCACTACAAATTAA+GGG - chr5_4:42679938-42679957 Msa0851970:CDS 15.0%
!! TGTGGCTAAAAAAAATTAAT+TGG + chr5_4:42676115-42676134 None:intergenic 20.0%
!!! TATTATCCATTTTATGTATG+TGG + chr5_4:42676133-42676152 None:intergenic 20.0%
!!! ATAATCAAAGAACTTGTTAA+GGG - chr5_4:42676182-42676201 Msa0851970:three_prime_UTR 20.0%
!! CATTCATTAAATGATGTATT+TGG + chr5_4:42676773-42676792 None:intergenic 20.0%
!!! AAGATTTGACTAGTTAAATT+TGG + chr5_4:42676976-42676995 None:intergenic 20.0%
!!! AACTTAAGAAACTATTGATT+TGG - chr5_4:42677051-42677070 Msa0851970:intron 20.0%
!! AGTCTAAAGGAAAAAAATTA+TGG + chr5_4:42677168-42677187 None:intergenic 20.0%
!!! GAAGAATATCATTTTACAAA+AGG - chr5_4:42677452-42677471 Msa0851970:intron 20.0%
!! TACAAAAGGATAACTTATTA+TGG - chr5_4:42677466-42677485 Msa0851970:intron 20.0%
!! ACAAAAGGATAACTTATTAT+GGG - chr5_4:42677467-42677486 Msa0851970:intron 20.0%
!! TTAATCTCATTAATACTAGT+TGG - chr5_4:42677719-42677738 Msa0851970:CDS 20.0%
!!! AACAATGTTTTATGATGATA+TGG + chr5_4:42678071-42678090 None:intergenic 20.0%
!! ATCAGATTACATTTATATGT+AGG + chr5_4:42678167-42678186 None:intergenic 20.0%
!!! TTTTTTATCAAGCAAACAAA+AGG + chr5_4:42678227-42678246 None:intergenic 20.0%
!!! CATATTTAAGATTGATGAAA+TGG + chr5_4:42678261-42678280 None:intergenic 20.0%
!! CATTTCATCAATCTTAAATA+TGG - chr5_4:42678259-42678278 Msa0851970:intron 20.0%
!!! ATTTTACATGAAATAATGAC+AGG - chr5_4:42678416-42678435 Msa0851970:intron 20.0%
!! AAACACTATCAATTGTATTT+GGG + chr5_4:42678793-42678812 None:intergenic 20.0%
!! AAAACACTATCAATTGTATT+TGG + chr5_4:42678794-42678813 None:intergenic 20.0%
!! TAAGTGTAAATAAGTACAAT+AGG - chr5_4:42678897-42678916 Msa0851970:intron 20.0%
!! ATATGAGATGTGATAAATAA+GGG + chr5_4:42679036-42679055 None:intergenic 20.0%
!!! AAATAATTTTGGTTGAGTAA+AGG - chr5_4:42679102-42679121 Msa0851970:intron 20.0%
!!! AATAATTTTGGTTGAGTAAA+GGG - chr5_4:42679103-42679122 Msa0851970:intron 20.0%
!! ATTTCTAATTATGACATTTG+GGG + chr5_4:42679132-42679151 None:intergenic 20.0%
!!! TATAATTTGTCCTAAGTATT+TGG + chr5_4:42679179-42679198 None:intergenic 20.0%
!! GGCTAAAAAAAAAAAAAATG+GGG + chr5_4:42679245-42679264 None:intergenic 20.0%
!! TTAATTACCTTAATCAATTG+TGG - chr5_4:42679418-42679437 Msa0851970:intron 20.0%
!! TAATTAACCACAATTGATTA+AGG + chr5_4:42679428-42679447 None:intergenic 20.0%
!!! GATATTCTTGTTTTATAGTT+AGG + chr5_4:42679716-42679735 None:intergenic 20.0%
!!! TAAGCCAAATATTTTTTTGT+AGG + chr5_4:42679969-42679988 None:intergenic 20.0%
!! ATGATAAGTTAAACAAATTC+AGG - chr5_4:42680241-42680260 Msa0851970:five_prime_UTR 20.0%
!! TGATAAGTTAAACAAATTCA+GGG - chr5_4:42680242-42680261 Msa0851970:five_prime_UTR 20.0%
!! AAGTGTTCATTATTTCTCTA+AGG - chr5_4:42675953-42675972 Msa0851970:three_prime_UTR 25.0%
! AATCAAATGAATGCAAATGA+TGG + chr5_4:42676008-42676027 None:intergenic 25.0%
! AAGAAAAAAAAGTAGTAGGT+GGG + chr5_4:42676076-42676095 None:intergenic 25.0%
! TTCCAAGAAAAAAAAGTAGT+AGG + chr5_4:42676080-42676099 None:intergenic 25.0%
!! TTTTAGCCACATACATAAAA+TGG - chr5_4:42676124-42676143 Msa0851970:three_prime_UTR 25.0%
!!! GATAATCAAAGAACTTGTTA+AGG - chr5_4:42676181-42676200 Msa0851970:three_prime_UTR 25.0%
! AATTAGTGAAAGTAGAAAGA+AGG - chr5_4:42676373-42676392 Msa0851970:exon 25.0%
! ATTAGTGAAAGTAGAAAGAA+GGG - chr5_4:42676374-42676393 Msa0851970:exon 25.0%
!!! GTTTTTTTTTCACATGTAGT+AGG - chr5_4:42676461-42676480 Msa0851970:CDS 25.0%
!!! TTGACTTTTTTCTATGAACT+TGG + chr5_4:42676499-42676518 None:intergenic 25.0%
!!! TCAAAAACCCTTATTTTTGT+CGG - chr5_4:42676515-42676534 Msa0851970:CDS 25.0%
! TGCAATGATTTCATGAAATT+GGG - chr5_4:42676553-42676572 Msa0851970:CDS 25.0%
! GAGGTAATTATTTACAAATG+AGG - chr5_4:42676833-42676852 Msa0851970:intron 25.0%
! AATGTAACTTCATGATAGTT+CGG - chr5_4:42677134-42677153 Msa0851970:intron 25.0%
!! ATGACTCAATTAATTTGGAA+CGG + chr5_4:42677220-42677239 None:intergenic 25.0%
! AGCAAATGACTCAATTAATT+TGG + chr5_4:42677225-42677244 None:intergenic 25.0%
! AAACCTAAAATGTAAGCTTA+TGG - chr5_4:42677848-42677867 Msa0851970:intron 25.0%
!! AACCTTAATTTTTACAGTCA+AGG - chr5_4:42677890-42677909 Msa0851970:intron 25.0%
! AAATGTAATCTGATTGTATG+TGG - chr5_4:42678173-42678192 Msa0851970:intron 25.0%
! ATGATTATCAACAATGGTTT+GGG + chr5_4:42678506-42678525 None:intergenic 25.0%
! AATGATTATCAACAATGGTT+TGG + chr5_4:42678507-42678526 None:intergenic 25.0%
! AAGGGAAAAAAAAAATACCT+GGG + chr5_4:42678574-42678593 None:intergenic 25.0%
! AAAGGGAAAAAAAAAATACC+TGG + chr5_4:42678575-42678594 None:intergenic 25.0%
! TATATTTCTTTGCACGTAAA+GGG + chr5_4:42678592-42678611 None:intergenic 25.0%
! ATATATTTCTTTGCACGTAA+AGG + chr5_4:42678593-42678612 None:intergenic 25.0%
! AAATCTTCTTGAATGTACTT+TGG + chr5_4:42678724-42678743 None:intergenic 25.0%
! AAGAGTTGTTTACTTCATTT+CGG + chr5_4:42678938-42678957 None:intergenic 25.0%
! GATATGAGATGTGATAAATA+AGG + chr5_4:42679037-42679056 None:intergenic 25.0%
! TCTTAGTGTAGAATGAATAA+TGG - chr5_4:42679071-42679090 Msa0851970:intron 25.0%
! CTTAGTGTAGAATGAATAAT+GGG - chr5_4:42679072-42679091 Msa0851970:intron 25.0%
!! TGGGTGTACAAAAATAATTT+TGG - chr5_4:42679091-42679110 Msa0851970:intron 25.0%
!!! CTCCGTGTTTTTATTATAAA+TGG + chr5_4:42679220-42679239 None:intergenic 25.0%
! ATAAAAATCAACCTTGGAAA+TGG + chr5_4:42679273-42679292 None:intergenic 25.0%
! GATTTGATAAAAATCAACCT+TGG + chr5_4:42679279-42679298 None:intergenic 25.0%
!! TTTTCAAAAATATACCTCAC+AGG - chr5_4:42679496-42679515 Msa0851970:intron 25.0%
! ATGTATCAAACTACATACAT+TGG - chr5_4:42679600-42679619 Msa0851970:intron 25.0%
!!! CCAAATATTTTTTTGTAGGA+AGG + chr5_4:42679965-42679984 None:intergenic 25.0%
! CCTTCCTACAAAAAAATATT+TGG - chr5_4:42679962-42679981 Msa0851970:CDS 25.0%
CAAGAAAAAAAAGTAGTAGG+TGG + chr5_4:42676077-42676096 None:intergenic 30.0%
!!! CACCTACTACTTTTTTTTCT+TGG - chr5_4:42676075-42676094 Msa0851970:three_prime_UTR 30.0%
CTTTCTTTCTAACACTTTCA+GGG + chr5_4:42676160-42676179 None:intergenic 30.0%
ACTTTCTTTCTAACACTTTC+AGG + chr5_4:42676161-42676180 None:intergenic 30.0%
AAATCATCACAACTTGAGTT+TGG + chr5_4:42676326-42676345 None:intergenic 30.0%
AAAATCGCCGACAAAAATAA+GGG + chr5_4:42676525-42676544 None:intergenic 30.0%
GTGCAATGATTTCATGAAAT+TGG - chr5_4:42676552-42676571 Msa0851970:CDS 30.0%
! GTAAAGTTGTTCTAGCTATA+AGG - chr5_4:42676662-42676681 Msa0851970:CDS 30.0%
CTAGCTATAAGGAAATTTGA+AGG - chr5_4:42676673-42676692 Msa0851970:CDS 30.0%
TTGCTTATAATAGTAATCGG+AGG - chr5_4:42676811-42676830 Msa0851970:intron 30.0%
ACTAGTCAAATCTTTCTCTA+TGG - chr5_4:42676982-42677001 Msa0851970:intron 30.0%
AGGAAAAAAATTATGGCATG+TGG + chr5_4:42677161-42677180 None:intergenic 30.0%
TAAGTACTCTTGTCAAGTAT+TGG - chr5_4:42677294-42677313 Msa0851970:intron 30.0%
! TTGAAATGGGTCAGATATTT+TGG - chr5_4:42677430-42677449 Msa0851970:intron 30.0%
AAGGATAACTTATTATGGGA+TGG - chr5_4:42677471-42677490 Msa0851970:intron 30.0%
AGCAAACTAGTAGACTATTA+CGG - chr5_4:42677805-42677824 Msa0851970:intron 30.0%
! GTACCATAAGCTTACATTTT+AGG + chr5_4:42677854-42677873 None:intergenic 30.0%
TTAAGGTTGTGTCTTACTTA+TGG + chr5_4:42677878-42677897 None:intergenic 30.0%
AGCCTTGACTGTAAAAATTA+AGG + chr5_4:42677895-42677914 None:intergenic 30.0%
! AATTTTTACAGTCAAGGCTT+AGG - chr5_4:42677896-42677915 Msa0851970:intron 30.0%
GTAGTTCAGCTAATAACTAA+GGG + chr5_4:42678015-42678034 None:intergenic 30.0%
AGTAGTTCAGCTAATAACTA+AGG + chr5_4:42678016-42678035 None:intergenic 30.0%
ATGTAGGAAAGTCTATGATA+TGG + chr5_4:42678151-42678170 None:intergenic 30.0%
AAAGAAAATGAAAAACCGCT+TGG + chr5_4:42678335-42678354 None:intergenic 30.0%
TTAAGTTAATTGTTTCCCAC+AGG - chr5_4:42678449-42678468 Msa0851970:intron 30.0%
CCATGAATGATTATCAACAA+TGG + chr5_4:42678512-42678531 None:intergenic 30.0%
!! CCATTGTTGATAATCATTCA+TGG - chr5_4:42678509-42678528 Msa0851970:intron 30.0%
AATCATTCATGGAGAAAGTA+TGG - chr5_4:42678520-42678539 Msa0851970:intron 30.0%
! ATCATTCATGGAGAAAGTAT+GGG - chr5_4:42678521-42678540 Msa0851970:intron 30.0%
AGGGAAAAAAAAAATACCTG+GGG + chr5_4:42678573-42678592 None:intergenic 30.0%
TTATACTGACATTTGTAGCA+AGG - chr5_4:42678643-42678662 Msa0851970:intron 30.0%
TATACTGACATTTGTAGCAA+GGG - chr5_4:42678644-42678663 Msa0851970:intron 30.0%
TGTCCTAAGTATTTGGATTA+GGG + chr5_4:42679172-42679191 None:intergenic 30.0%
TTGTCCTAAGTATTTGGATT+AGG + chr5_4:42679173-42679192 None:intergenic 30.0%
! TTTTGTAGGCAATTTAGATG+AGG + chr5_4:42679325-42679344 None:intergenic 30.0%
AATTCAGTTTGGTCAAACTA+GGG + chr5_4:42679370-42679389 None:intergenic 30.0%
AAATTCAGTTTGGTCAAACT+AGG + chr5_4:42679371-42679390 None:intergenic 30.0%
! TTTGACCAAACTGAATTTTG+TGG - chr5_4:42679373-42679392 Msa0851970:intron 30.0%
TCAATAAACTGAACTAGACA+TGG - chr5_4:42679451-42679470 Msa0851970:intron 30.0%
TGTTCACATAAAGATGATCA+AGG - chr5_4:42679531-42679550 Msa0851970:intron 30.0%
TATGTAGTTTGATACATGTC+AGG + chr5_4:42679597-42679616 None:intergenic 30.0%
!! TCATTAGAAGTACTTGCTTT+AGG + chr5_4:42679648-42679667 None:intergenic 30.0%
TAAAGCAAGTACTTCTAATG+AGG - chr5_4:42679647-42679666 Msa0851970:intron 30.0%
!!! TCTTGTTTTATAGTTAGGCT+TGG + chr5_4:42679711-42679730 None:intergenic 30.0%
TCACATTCCATAACATTACT+CGG + chr5_4:42679753-42679772 None:intergenic 30.0%
! AAAATCTAGCACTGGAATTT+GGG - chr5_4:42679802-42679821 Msa0851970:intron 30.0%
!! CTTTTGACTATCAATTCTCA+TGG - chr5_4:42679995-42680014 Msa0851970:CDS 30.0%
TTGCTTGATGTTATTAGCAA+GGG - chr5_4:42680088-42680107 Msa0851970:exon 30.0%
TCTGTTATGATTGGAAGAAT+TGG - chr5_4:42680139-42680158 Msa0851970:five_prime_UTR 30.0%
CTGTTATGATTGGAAGAATT+GGG - chr5_4:42680140-42680159 Msa0851970:five_prime_UTR 30.0%
!! TGTTGCTTTGGTAAATCTTT+AGG - chr5_4:42680204-42680223 Msa0851970:five_prime_UTR 30.0%
! GTTGCTTTGGTAAATCTTTA+GGG - chr5_4:42680205-42680224 Msa0851970:five_prime_UTR 30.0%
TTGCTTTGGTAAATCTTTAG+GGG - chr5_4:42680206-42680225 Msa0851970:five_prime_UTR 30.0%
CTGAAGAAGAATCTTGAGTT+TGG + chr5_4:42676222-42676241 None:intergenic 35.0%
CAAAATCGCCGACAAAAATA+AGG + chr5_4:42676526-42676545 None:intergenic 35.0%
!!! CTTATTTTTGTCGGCGATTT+TGG - chr5_4:42676524-42676543 Msa0851970:CDS 35.0%
TCATGAAATTGGGAACTGTA+CGG - chr5_4:42676563-42676582 Msa0851970:CDS 35.0%
CTTATAATAGTAATCGGAGG+AGG - chr5_4:42676814-42676833 Msa0851970:intron 35.0%
! GGCTTACATTTTAGACTACT+TGG - chr5_4:42677003-42677022 Msa0851970:intron 35.0%
TTCCTTTAGACTTATCAAGC+TGG - chr5_4:42677176-42677195 Msa0851970:intron 35.0%
! ACTCAATTAATTTGGAACGG+AGG + chr5_4:42677217-42677236 None:intergenic 35.0%
GCAAACTAGTAGACTATTAC+GGG - chr5_4:42677806-42677825 Msa0851970:intron 35.0%
! TTACGGGCTTTCTAAAAGTT+AGG - chr5_4:42677822-42677841 Msa0851970:intron 35.0%
TCAAGGCTTAGGAAAAAGTA+TGG - chr5_4:42677907-42677926 Msa0851970:intron 35.0%
ATAACTAAGGGTGAGAATCA+TGG + chr5_4:42678003-42678022 None:intergenic 35.0%
AGAGTAAAGGAGCAATAAAG+AGG + chr5_4:42678108-42678127 None:intergenic 35.0%
AATCTGATTGTATGTGGTTC+AGG - chr5_4:42678179-42678198 Msa0851970:intron 35.0%
GACTAAGAGTAAACACGAAA+GGG + chr5_4:42678205-42678224 None:intergenic 35.0%
TTGAGTGTTTCAAATCCAAG+CGG - chr5_4:42678317-42678336 Msa0851970:intron 35.0%
! AACAATGGTTTGGGAAACTA+TGG + chr5_4:42678497-42678516 None:intergenic 35.0%
!! ACATGATTGGTTCTGTTACT+AGG + chr5_4:42678673-42678692 None:intergenic 35.0%
TTTCGAATGATCACTTGCAT+AGG + chr5_4:42678699-42678718 None:intergenic 35.0%
GCAGGTTAAGGAATCAAAAA+TGG + chr5_4:42678750-42678769 None:intergenic 35.0%
TTTGGGAAATGCTAACAAGT+GGG + chr5_4:42678776-42678795 None:intergenic 35.0%
ATTTGGGAAATGCTAACAAG+TGG + chr5_4:42678777-42678796 None:intergenic 35.0%
CAAAATTACACCAAACGAGT+TGG - chr5_4:42678814-42678833 Msa0851970:intron 35.0%
!! ACCAAACGAGTTGGTTTAAT+CGG - chr5_4:42678823-42678842 Msa0851970:intron 35.0%
TTAGCCAAAAACCATTTCCA+AGG - chr5_4:42679259-42679278 Msa0851970:intron 35.0%
! TCAACCTTGGAAATGGTTTT+TGG + chr5_4:42679266-42679285 None:intergenic 35.0%
CAATTTAGATGAGGTTTCAG+TGG + chr5_4:42679316-42679335 None:intergenic 35.0%
GTTATTGACAGTTTGGCAAT+CGG + chr5_4:42679348-42679367 None:intergenic 35.0%
AACTAGGGTTATTGACAGTT+TGG + chr5_4:42679355-42679374 None:intergenic 35.0%
ACTGACCACAAAATTCAGTT+TGG + chr5_4:42679381-42679400 None:intergenic 35.0%
!! TTTATAGTTAGGCTTGGTGT+TGG + chr5_4:42679705-42679724 None:intergenic 35.0%
AGAAACTCCGAGTAATGTTA+TGG - chr5_4:42679743-42679762 Msa0851970:intron 35.0%
AGTGTTTCAAAATCTAGCAC+TGG - chr5_4:42679794-42679813 Msa0851970:intron 35.0%
! CAAAATCTAGCACTGGAATT+TGG - chr5_4:42679801-42679820 Msa0851970:intron 35.0%
! AAATCTAGCACTGGAATTTG+GGG - chr5_4:42679803-42679822 Msa0851970:intron 35.0%
GTTGCTTGATGTTATTAGCA+AGG - chr5_4:42680087-42680106 Msa0851970:exon 35.0%
ATCATAACAGAAGCAGAAGA+AGG + chr5_4:42680130-42680149 None:intergenic 35.0%
TCTTCTGCTTCTGTTATGAT+TGG - chr5_4:42680130-42680149 Msa0851970:five_prime_UTR 35.0%
TTATGATTGGAAGAATTGGG+TGG - chr5_4:42680143-42680162 Msa0851970:five_prime_UTR 35.0%
ATAGGAATCGAAAAAAGGAG+AGG - chr5_4:42680277-42680296 Msa0851970:five_prime_UTR 35.0%
AGTAGAAAGAAGGGAAGAAG+AGG - chr5_4:42676383-42676402 Msa0851970:exon 40.0%
GAAGAGGTTGCTACAAAAGA+AGG - chr5_4:42676399-42676418 Msa0851970:CDS 40.0%
!! CGTATTTGGTTTGAGGTGTA+CGG - chr5_4:42676587-42676606 Msa0851970:CDS 40.0%
AGCCAGCTTGATAAGTCTAA+AGG + chr5_4:42677181-42677200 None:intergenic 40.0%
GTGTTGTCGAACAAGAAAGT+TGG + chr5_4:42678042-42678061 None:intergenic 40.0%
AGGCTATCGCTATAGAGTAA+AGG + chr5_4:42678121-42678140 None:intergenic 40.0%
TTACTCTATAGCGATAGCCT+AGG - chr5_4:42678121-42678140 Msa0851970:intron 40.0%
TACTCTATAGCGATAGCCTA+GGG - chr5_4:42678122-42678141 Msa0851970:intron 40.0%
GGACTAAGAGTAAACACGAA+AGG + chr5_4:42678206-42678225 None:intergenic 40.0%
GTATGGGCAGAAGAAAATCA+TGG - chr5_4:42678537-42678556 Msa0851970:intron 40.0%
CTTGCATAGGCTTACATGAT+TGG + chr5_4:42678686-42678705 None:intergenic 40.0%
TTGGGAAATGCTAACAAGTG+GGG + chr5_4:42678775-42678794 None:intergenic 40.0%
ACCGATTAAACCAACTCGTT+TGG + chr5_4:42678827-42678846 None:intergenic 40.0%
!! AAACGAGTTGGTTTAATCGG+TGG - chr5_4:42678826-42678845 Msa0851970:intron 40.0%
! CCTAAGTATTTGGATTAGGG+AGG + chr5_4:42679169-42679188 None:intergenic 40.0%
CCTCCCTAATCCAAATACTT+AGG - chr5_4:42679166-42679185 Msa0851970:intron 40.0%
!! AGTTTGGCAATCGGTTTTGT+AGG + chr5_4:42679339-42679358 None:intergenic 40.0%
! ATGTGTCTTTTGCACCTGTT+TGG + chr5_4:42679568-42679587 None:intergenic 40.0%
!! AGAAGTACTTGCTTTAGGAG+TGG + chr5_4:42679643-42679662 None:intergenic 40.0%
! TCTCCGAATTCTGAAAACGA+AGG - chr5_4:42680031-42680050 Msa0851970:CDS 40.0%
! GCACCTTCGTTTTCAGAATT+CGG + chr5_4:42680037-42680056 None:intergenic 40.0%
! AAGGTGCTTAAACGCAAATG+TGG - chr5_4:42680050-42680069 Msa0851970:CDS 40.0%
! AAGGAGGATGTATGTTGCTT+TGG - chr5_4:42680192-42680211 Msa0851970:five_prime_UTR 40.0%
GCTGGATAGGAATCGAAAAA+AGG - chr5_4:42680272-42680291 Msa0851970:five_prime_UTR 40.0%
!! AGTAGGTGGGTGTTGTTTGA+GGG + chr5_4:42676063-42676082 None:intergenic 45.0%
!! TAGTAGGTGGGTGTTGTTTG+AGG + chr5_4:42676064-42676083 None:intergenic 45.0%
CTTCAGAACGAGAATCCCTA+TGG - chr5_4:42676236-42676255 Msa0851970:three_prime_UTR 45.0%
GCAAGATGATCAGCTCCATA+GGG + chr5_4:42676254-42676273 None:intergenic 45.0%
AGCAAGATGATCAGCTCCAT+AGG + chr5_4:42676255-42676274 None:intergenic 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_4:42676580-42676599 Msa0851970:CDS 45.0%
TTGAGGTGTACGGACGTATT+TGG - chr5_4:42676597-42676616 Msa0851970:CDS 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_4:42676580-42676599 Msa0851970:CDS 45.0%
ACATAGCCTCAGAATAGTCG+AGG - chr5_4:42677973-42677992 Msa0851970:intron 45.0%
GTCTATGATATGGAAGCCCT+AGG + chr5_4:42678141-42678160 None:intergenic 45.0%
TCATGGATTCTGAATTCCCC+AGG - chr5_4:42678554-42678573 Msa0851970:intron 45.0%
ACTGACATTTGTAGCAAGGG+AGG - chr5_4:42678647-42678666 Msa0851970:intron 45.0%
TGGGAAATGCTAACAAGTGG+GGG + chr5_4:42678774-42678793 None:intergenic 45.0%
TGAGGTTTCAGTGGTAGAAG+AGG + chr5_4:42679307-42679326 None:intergenic 45.0%
TACCTCACAGGAGTTACTTC+AGG - chr5_4:42679508-42679527 Msa0851970:intron 45.0%
TTTGCACCTGTTTGGTTGCT+GGG + chr5_4:42679560-42679579 None:intergenic 45.0%
! TTTTGCACCTGTTTGGTTGC+TGG + chr5_4:42679561-42679580 None:intergenic 45.0%
!! CAAATTCAGGGTATTGTCGC+TGG - chr5_4:42680254-42680273 Msa0851970:five_prime_UTR 45.0%
GGAATCGAAAAAAGGAGAGG+TGG - chr5_4:42680280-42680299 Msa0851970:five_prime_UTR 45.0%
ATCGAAAAAAGGAGAGGTGG+AGG - chr5_4:42680283-42680302 Msa0851970:five_prime_UTR 45.0%
!!! ACTTTTTTTTTTTTTATAAT+AGG + chr5_4:42675937-42675956 None:intergenic 5.0%
GAGGGAAGAGGAGAGAAGAT+GGG + chr5_4:42676045-42676064 None:intergenic 50.0%
TGAGGGAAGAGGAGAGAAGA+TGG + chr5_4:42676046-42676065 None:intergenic 50.0%
!! TGGGTGTTGTTTGAGGGAAG+AGG + chr5_4:42676057-42676076 None:intergenic 50.0%
CGTGCTGAGATCTTTCACTG+AGG - chr5_4:42676280-42676299 Msa0851970:three_prime_UTR 50.0%
GGGAACTGTACGGACGTATT+TGG - chr5_4:42676573-42676592 Msa0851970:CDS 50.0%
AGCCTCAGAATAGTCGAGGA+CGG - chr5_4:42677977-42677996 Msa0851970:intron 50.0%
! GGAAGAGTGCAGCTGAGATA+TGG - chr5_4:42678470-42678489 Msa0851970:intron 50.0%
GGTTTCAGTGGTAGAAGAGG+TGG + chr5_4:42679304-42679323 None:intergenic 50.0%
CACCTGAAGTAACTCCTGTG+AGG + chr5_4:42679513-42679532 None:intergenic 50.0%
!! AAGAATTGGGTGGTGCTGCA+TGG - chr5_4:42680153-42680172 Msa0851970:five_prime_UTR 50.0%
! TGGTAACGCAGATGTGGTCA+AGG - chr5_4:42680173-42680192 Msa0851970:five_prime_UTR 50.0%
TAACGCAGATGTGGTCAAGG+AGG - chr5_4:42680176-42680195 Msa0851970:five_prime_UTR 50.0%
!! TCAGGGTATTGTCGCTGGAT+AGG - chr5_4:42680259-42680278 Msa0851970:five_prime_UTR 50.0%
GAAAAAAGGAGAGGTGGAGG+AGG - chr5_4:42680286-42680305 Msa0851970:five_prime_UTR 50.0%
GGTAAGGAAGGGGACACAAT+AGG - chr5_4:42680307-42680326 Msa0851970:five_prime_UTR 50.0%
AAGGGGACACAATAGGTGTG+TGG - chr5_4:42680314-42680333 Msa0851970:five_prime_UTR 50.0%
CTCAGCTGCACTCTTCCTGT+GGG + chr5_4:42678467-42678486 None:intergenic 55.0%
TCTCAGCTGCACTCTTCCTG+TGG + chr5_4:42678468-42678487 None:intergenic 55.0%
AGGTTGCCCAGCAACCAAAC+AGG - chr5_4:42679551-42679570 Msa0851970:intron 55.0%
TAGGAGTGGCGTTGCATGTG+TGG + chr5_4:42679629-42679648 None:intergenic 55.0%
! GCTGCATGGTAACGCAGATG+TGG - chr5_4:42680167-42680186 Msa0851970:five_prime_UTR 55.0%
AAGGAGAGGTGGAGGAGGTA+AGG - chr5_4:42680291-42680310 Msa0851970:five_prime_UTR 55.0%
AGAGGTGGAGGAGGTAAGGA+AGG - chr5_4:42680295-42680314 Msa0851970:five_prime_UTR 55.0%
GAGGTGGAGGAGGTAAGGAA+GGG - chr5_4:42680296-42680315 Msa0851970:five_prime_UTR 55.0%
AGGTGGAGGAGGTAAGGAAG+GGG - chr5_4:42680297-42680316 Msa0851970:five_prime_UTR 55.0%
GGCCGTCCTCGACTATTCTG+AGG + chr5_4:42677982-42678001 None:intergenic 60.0%
! ACAAGTGGGGGCGCAGGTTA+AGG + chr5_4:42678762-42678781 None:intergenic 60.0%
! ATGCTAACAAGTGGGGGCGC+AGG + chr5_4:42678768-42678787 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 42675905 42680339 42675905 ID=Msa0851970;Name=Msa0851970
chr5_4 mRNA 42675905 42680339 42675905 ID=Msa0851970-mRNA-1;Parent=Msa0851970;Name=Msa0851970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=238|1|1|1|1|1|3|485|239
chr5_4 exon 42675905 42676726 42675905 ID=Msa0851970-mRNA-1:exon:13520;Parent=Msa0851970-mRNA-1
chr5_4 exon 42677669 42677773 42677669 ID=Msa0851970-mRNA-1:exon:13519;Parent=Msa0851970-mRNA-1
chr5_4 exon 42679824 42680339 42679824 ID=Msa0851970-mRNA-1:exon:13518;Parent=Msa0851970-mRNA-1
chr5_4 five_prime_UTR 42680102 42680339 42680102 ID=Msa0851970-mRNA-1:five_prime_utr;Parent=Msa0851970-mRNA-1
chr5_4 CDS 42679824 42680101 42679824 ID=Msa0851970-mRNA-1:cds;Parent=Msa0851970-mRNA-1
chr5_4 CDS 42677669 42677773 42677669 ID=Msa0851970-mRNA-1:cds;Parent=Msa0851970-mRNA-1
chr5_4 CDS 42676390 42676726 42676390 ID=Msa0851970-mRNA-1:cds;Parent=Msa0851970-mRNA-1
chr5_4 three_prime_UTR 42675905 42676389 42675905 ID=Msa0851970-mRNA-1:three_prime_utr;Parent=Msa0851970-mRNA-1
Gene Sequence

>Msa0851970

ATGGATAATAATATCCCTGAAAGTGTTAGAAAGAAAGTGATAATCAAAGAACTTGTTAAGGGTCAAGAAGCTGCAACCAAACTCAAGATTCTTCTTCAGAACGAGAATCCCTATGGAGCTGATCATCTTGCTGCAAACGTGCTGAGATCTTTCACTGAGGCTCTTTCTATTATCTCTCAACCAAACTCAAGTTGTGATGATTTTCTGAATCTGATTAAATCTGCAGATTCAATTAGTGAAAGTAGAAAGAAGGGAAGAAGAGGTTGCTACAAAAGAAGGAAGAGTGCAGCTGAGATATGGACCATAGTTTCCCAAACCATTGTTGATAATCATTCATGGAGAAAGTATGGGCAGAAGAAAATCATGGATTCTGAATTCCCCAGGAGTTACTTCAGGTGTTCACATAAAGATGATCAAGGTTGCCCAGCAACCAAACAGGTGCAAAAGACACATGACAATCCTGACATGTATCAAACTACATACATTGGCATCCACACATGCAACGCCACTCCTAAAGCAAGTACTTCTAATGAGGCAATATTTGTGAATTGTGATGCTGAAGTAACACCAACACCAAGCCTAACTATAAAACAAGAATATCTCAAAGAAGAAACTCCGAGTAATGTTATGGAATGTGATGATAATGCAGATGATATGCTAGTGTTTCAAAATCTAGCACTGGAATTTGGGGACATTGAATTCAATTTTGATGAAAATTAA
Protein sequence

>Msa0851970

MDNNIPESVRKKVIIKELVKGQEAATKLKILLQNENPYGADHLAANVLRSFTEALSIISQPNSSCDDFLNLIKSADSISESRKKGRRGCYKRRKSAAEIWTIVSQTIVDNHSWRKYGQKKIMDSEFPRSYFRCSHKDDQGCPATKQVQKTHDNPDMYQTTYIGIHTCNATPKASTSNEAIFVNCDAEVTPTPSLTIKQEYLKEETPSNVMECDDNADDMLVFQNLALEFGDIEFNFDEN*