AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0811790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811790 MtrunA17_Chr5g0428351 96.234 239 6 2 1 239 78 313 1.45e-170 472
Msa0811790 MtrunA17_Chr3g0128671 43.295 261 97 12 20 237 23 275 5.85e-49 163
Msa0811790 MtrunA17_Chr7g0244981 38.627 233 112 9 1 205 1 230 1.69e-40 140
Msa0811790 MtrunA17_Chr7g0244971 41.341 179 89 4 4 167 5 182 2.29e-38 135
Msa0811790 MtrunA17_Chr8g0334541 42.138 159 86 3 15 168 6 163 2.33e-34 124
Msa0811790 MtrunA17_Chr8g0350621 39.634 164 87 5 15 167 8 170 1.75e-31 116
Msa0811790 MtrunA17_Chr2g0315371 29.767 215 120 4 5 188 7 221 2.20e-24 98.6
Msa0811790 MtrunA17_Chr2g0315361 47.253 91 47 1 92 181 131 221 6.11e-24 97.4
Msa0811790 MtrunA17_Chr2g0315381 36.290 124 74 2 66 188 105 224 1.62e-23 96.3
Msa0811790 MtrunA17_Chr7g0275531 32.571 175 96 6 10 167 8 177 7.34e-23 94.7
Msa0811790 MtrunA17_Chr8g0347251 50.685 73 36 0 101 173 129 201 1.37e-20 89.0
Msa0811790 MtrunA17_Chr3g0126391 30.890 191 94 6 12 167 5 192 9.29e-19 83.6
Msa0811790 MtrunA17_Chr8g0387981 30.601 183 97 5 13 167 11 191 9.97e-18 80.9
Msa0811790 MtrunA17_Chr8g0387501 50.769 65 30 1 101 165 122 184 6.00e-15 72.4
Msa0811790 MtrunA17_Chr7g0224801 50.000 58 26 1 109 166 94 148 2.99e-14 68.6
Msa0811790 MtrunA17_Chr4g0071521 42.857 84 39 2 89 165 219 300 1.25e-13 68.9
Msa0811790 MtrunA17_Chr5g0418781 32.192 146 78 7 73 212 91 221 1.60e-13 68.6
Msa0811790 MtrunA17_Chr1g0147881 42.857 84 39 3 89 165 236 317 3.63e-13 67.8
Msa0811790 MtrunA17_Chr4g0051881 37.209 86 51 1 107 192 177 259 6.02e-13 67.4
Msa0811790 MtrunA17_Chr5g0431811 39.189 74 41 1 109 182 673 742 1.48e-12 66.6
Msa0811790 MtrunA17_Chr5g0401821 41.463 82 46 1 84 165 175 254 2.58e-12 64.7
Msa0811790 MtrunA17_Chr2g0293481 32.836 134 73 4 43 165 195 322 3.17e-12 65.5
Msa0811790 MtrunA17_Chr1g0202461 48.276 58 28 1 108 165 261 316 3.50e-12 65.1
Msa0811790 MtrunA17_Chr2g0284321 36.842 95 54 2 109 199 36 128 4.06e-12 63.5
Msa0811790 MtrunA17_Chr8g0348311 47.541 61 30 1 109 169 156 214 6.13e-12 64.3
Msa0811790 MtrunA17_Chr7g0238921 46.032 63 31 1 109 171 125 184 7.05e-12 63.9
Msa0811790 MtrunA17_Chr1g0194481 44.828 58 29 1 109 166 159 213 1.62e-11 63.2
Msa0811790 MtrunA17_Chr8g0386241 37.333 75 43 2 109 183 104 174 2.07e-11 60.8
Msa0811790 MtrunA17_Chr5g0443131 31.405 121 76 4 107 225 156 271 3.55e-11 62.0
Msa0811790 MtrunA17_Chr8g0379461 44.928 69 35 2 109 177 77 142 4.29e-11 61.2
Msa0811790 MtrunA17_Chr1g0184691 38.372 86 51 1 86 171 271 354 4.46e-11 62.0
Msa0811790 MtrunA17_Chr4g0053281 39.759 83 48 1 83 165 241 321 7.00e-11 61.2
Msa0811790 MtrunA17_Chr7g0270191 43.333 60 31 1 107 166 144 200 9.26e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811790 AT3G56400.1 40.000 225 100 8 1 199 1 216 5.80e-43 147
Msa0811790 AT2G40750.1 36.283 226 88 9 2 178 4 222 6.18e-34 125
Msa0811790 AT1G66550.1 34.234 222 126 9 15 221 10 226 2.32e-26 103
Msa0811790 AT1G66550.2 32.751 229 115 9 15 221 10 221 1.87e-25 100
Msa0811790 AT5G01900.1 38.095 168 82 5 15 167 9 169 2.07e-25 100
Msa0811790 AT2G46400.1 31.658 199 110 7 9 189 3 193 7.23e-24 97.4
Msa0811790 AT1G66600.1 31.674 221 127 6 15 221 10 220 1.50e-23 95.5
Msa0811790 AT5G22570.1 33.908 174 105 3 15 182 11 180 1.48e-21 90.9
Msa0811790 AT1G66560.1 31.628 215 126 7 15 215 10 217 1.88e-21 90.1
Msa0811790 AT5G24110.1 35.762 151 72 4 41 176 41 181 2.28e-21 90.9
Msa0811790 AT2G40740.1 43.299 97 44 3 91 176 147 243 7.17e-20 86.7
Msa0811790 AT1G80590.1 32.544 169 91 3 15 181 10 157 7.25e-20 85.5
Msa0811790 AT2G40740.3 43.299 97 44 3 91 176 156 252 7.46e-20 86.7
Msa0811790 AT4G11070.2 32.335 167 99 5 11 168 8 169 2.68e-19 84.7
Msa0811790 AT4G23810.1 39.474 114 59 3 109 218 159 266 5.12e-19 84.7
Msa0811790 AT4G11070.1 53.333 60 28 0 109 168 142 201 4.87e-18 81.6
Msa0811790 AT5G45260.1 42.308 78 42 1 91 165 1188 1265 3.05e-15 75.1
Msa0811790 AT5G52830.1 35.878 131 67 6 109 227 166 291 3.86e-13 68.2
Msa0811790 AT1G29280.1 46.377 69 35 1 109 177 75 141 1.23e-12 65.9
Msa0811790 AT4G23550.1 38.298 94 51 3 107 199 139 226 1.41e-12 66.2
Msa0811790 AT4G31550.1 40.698 86 49 1 83 168 221 304 1.58e-12 66.2
Msa0811790 AT1G30650.1 41.000 100 41 4 78 165 179 272 2.12e-12 66.2
Msa0811790 AT5G49520.1 46.552 58 28 1 109 166 222 276 4.22e-12 65.5
Msa0811790 AT2G34830.1 37.079 89 43 2 88 165 184 270 4.48e-12 65.5
Msa0811790 AT5G13080.1 44.828 58 29 1 109 166 68 122 5.51e-12 62.0
Msa0811790 AT2G34830.2 41.379 87 37 3 91 165 195 279 5.90e-12 65.1
Msa0811790 AT4G01250.1 32.824 131 83 4 69 196 87 215 7.47e-12 64.3
Msa0811790 AT4G31550.2 40.000 85 49 1 84 168 221 303 1.02e-11 63.9
Msa0811790 AT3G01970.1 44.828 58 29 1 109 166 66 120 1.15e-11 61.2
Msa0811790 AT2G46130.1 38.462 91 45 3 75 165 5 84 1.80e-11 59.7
Msa0811790 AT1G69310.4 43.750 64 32 2 107 170 146 205 1.94e-11 62.8
Msa0811790 AT1G69310.2 43.750 64 32 2 107 170 146 205 1.94e-11 62.8
Msa0811790 AT1G69310.1 43.750 64 32 2 107 170 146 205 1.94e-11 62.8
Msa0811790 AT1G64000.1 43.860 57 29 1 109 165 115 168 2.78e-11 61.2
Msa0811790 AT2G25000.2 42.466 73 39 2 104 176 99 168 3.94e-11 61.2
Msa0811790 AT2G25000.4 42.466 73 39 2 104 176 99 168 3.94e-11 61.2
Msa0811790 AT5G41570.1 33.696 92 52 2 80 165 64 152 5.47e-11 60.1
Msa0811790 AT2G47260.1 36.471 85 49 2 84 166 148 229 5.78e-11 62.0
Msa0811790 AT2G25000.3 41.892 74 40 2 103 176 120 190 5.80e-11 61.2
Msa0811790 AT2G25000.1 42.466 73 39 2 104 176 142 211 6.30e-11 61.2
Msa0811790 AT2G37260.1 35.294 85 52 1 81 165 322 403 6.31e-11 62.0
Msa0811790 AT3G58710.2 36.522 115 57 4 57 165 21 125 7.50e-11 61.2
Msa0811790 AT2G37260.2 35.294 85 52 1 81 165 240 321 9.41e-11 61.2
Msa0811790 AT2G37260.3 35.294 85 52 1 81 165 242 323 9.56e-11 61.2
Msa0811790 AT2G23320.1 39.773 88 44 2 85 165 210 295 9.67e-11 61.2
Msa0811790 AT5G45050.1 38.043 92 39 4 79 165 1157 1235 9.74e-11 62.0

Find 87 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTATCACTACAAATTA+AGG 0.130880 5_3:-41198091 Msa0811790:three_prime_UTR
CAAAATCTAGCACTGGAATT+TGG 0.136957 5_3:-41198227 Msa0811790:CDS
TGTTGCTTTGGTAAATCTTT+AGG 0.163085 5_3:-41197817 Msa0811790:three_prime_UTR
ACTTTCTTTCTAACACTTTC+AGG 0.226424 5_3:+41201912 None:intergenic
ATGATAAGTCAAACAAATTC+AGG 0.241556 5_3:-41197780 Msa0811790:three_prime_UTR
AAAATCTAGCACTGGAATTT+GGG 0.252381 5_3:-41198226 Msa0811790:CDS
TCATTAGAAGTACTTGCTTT+AGG 0.273585 5_3:+41198383 None:intergenic
GTTGCTTTGGTAAATCTTTA+GGG 0.281655 5_3:-41197816 Msa0811790:three_prime_UTR
AGTCATTCATGGAGAAAGTA+TGG 0.288680 5_3:-41199522 Msa0811790:CDS
GTGGTATGTGCCTCCGCCAC+TGG 0.308630 5_3:-41202118 Msa0811790:five_prime_UTR
CTGCTTCTGTTAACAATGAT+TGG 0.317426 5_3:-41197891 Msa0811790:three_prime_UTR
CTGAAGAAGAATCTTGAGTT+TGG 0.329999 5_3:+41201851 None:intergenic
AAATCATCACAACTTGAGTT+TGG 0.348658 5_3:+41201747 None:intergenic
TGAGGGAAGAGGAGAGAAGA+TGG 0.354426 5_3:+41202027 None:intergenic
TTAACAATGATTGGAAGAAT+TGG 0.370421 5_3:-41197882 Msa0811790:three_prime_UTR
AATGACTATCAACAATGGTT+TGG 0.376064 5_3:+41199538 None:intergenic
AGAGGTGGAGGAGGTAAGGA+AGG 0.377323 5_3:-41197726 Msa0811790:three_prime_UTR
AGGTGTAATTTCTAAATGTC+AGG 0.378450 5_3:-41202162 Msa0811790:five_prime_UTR
TATTTATCACTACAAATTAA+GGG 0.383213 5_3:-41198090 Msa0811790:three_prime_UTR
GATAATCAAAGAACTTGTTA+AGG 0.389804 5_3:-41201889 Msa0811790:CDS
GGAAGAGTGCAGCTGAGATA+TGG 0.391667 5_3:-41199572 Msa0811790:CDS
CCATTGTTGATAGTCATTCA+TGG 0.391948 5_3:-41199533 Msa0811790:CDS
AACAATGGTTTGGGAAACTA+TGG 0.395929 5_3:+41199548 None:intergenic
ACACAATAGGTGTGTGGCGA+TGG 0.402805 5_3:-41197701 None:intergenic
AGTAGGTGGGTGTTGTTTGA+GGG 0.407885 5_3:+41202010 None:intergenic
AGAAACTCCGAGTAATGTTA+TGG 0.412327 5_3:-41198285 Msa0811790:CDS
AAGGAGAGGTGGAGGAGGTA+AGG 0.418391 5_3:-41197730 Msa0811790:three_prime_UTR
ATGACTATCAACAATGGTTT+GGG 0.419600 5_3:+41199539 None:intergenic
TAGTAGGTGGGTGTTGTTTG+AGG 0.425768 5_3:+41202009 None:intergenic
AAGGAGGATGTATGTTGCTT+TGG 0.428733 5_3:-41197829 Msa0811790:three_prime_UTR
ATTAGTGAAAGTAGAAAGAA+GGG 0.442638 5_3:-41201696 Msa0811790:CDS
CTTTCTTTCTAACACTTTCA+GGG 0.446465 5_3:+41201913 None:intergenic
TACCTCACAGGAGTTACTTC+AGG 0.451478 5_3:-41198520 Msa0811790:intron
CAAATTCAGGGTATTGTCGC+TGG 0.454913 5_3:-41197767 Msa0811790:three_prime_UTR
AGGTGGAGGAGGTAAGGAAG+GGG 0.455461 5_3:-41197724 Msa0811790:three_prime_UTR
TGCTTGATGTTATTAGCAAA+GGG 0.461289 5_3:-41197939 Msa0811790:three_prime_UTR
AATTAGTGAAAGTAGAAAGA+AGG 0.462260 5_3:-41201697 Msa0811790:CDS
GGTAAGGAAGGGGACACAAT+AGG 0.464902 5_3:-41197714 Msa0811790:three_prime_UTR
TAACAATGATTGGAAGAATT+GGG 0.468611 5_3:-41197881 Msa0811790:three_prime_UTR
TGGGTGTTGTTTGAGGGAAG+AGG 0.471972 5_3:+41202016 None:intergenic
TGGTATGTGCCTCCGCCACT+GGG 0.474787 5_3:-41202117 Msa0811790:five_prime_UTR
TATGTAGTTTGATACATGTC+AGG 0.475973 5_3:+41198434 None:intergenic
TTTATAGTTAGGCTTGGTGT+TGG 0.476623 5_3:+41198326 None:intergenic
GAGGTGGAGGAGGTAAGGAA+GGG 0.485435 5_3:-41197725 Msa0811790:three_prime_UTR
TTGCTTGATGTTATTAGCAA+AGG 0.487303 5_3:-41197940 Msa0811790:three_prime_UTR
GAGGGAAGAGGAGAGAAGAT+GGG 0.490627 5_3:+41202028 None:intergenic
ATAATCAAAGAACTTGTTAA+GGG 0.491966 5_3:-41201888 Msa0811790:CDS
GAAGAGGTTGCTACAAAAGA+AGG 0.499456 5_3:-41201671 Msa0811790:intron
ATAATTATGCCCAGTGGCGG+AGG 0.504243 5_3:+41202108 None:intergenic
AGGTTGCTCAGCAACCAAAC+AGG 0.515216 5_3:-41198477 Msa0811790:CDS
TCAGGGTATTGTCGCTGGAT+AGG 0.523072 5_3:-41197762 Msa0811790:three_prime_UTR
CTTCAGAACGAGAATCCCTA+TGG 0.526631 5_3:-41201834 Msa0811790:CDS
AGTAGAAAGAAGGGAAGAAG+AGG 0.527985 5_3:-41201687 Msa0811790:CDS
TAAAGCAAGTACTTCTAATG+AGG 0.529120 5_3:-41198381 Msa0811790:CDS
AGTGTTTCAAAATCTAGCAC+TGG 0.543569 5_3:-41198234 Msa0811790:CDS
TGATAAGTCAAACAAATTCA+GGG 0.552622 5_3:-41197779 Msa0811790:three_prime_UTR
GTATGGGCAGAAGAAAATCA+TGG 0.554126 5_3:-41199505 Msa0811790:CDS
AGCAAGATGATCAGCTCCAT+AGG 0.557040 5_3:+41201818 None:intergenic
GGTGTAATTTCTAAATGTCA+GGG 0.561601 5_3:-41202161 Msa0811790:five_prime_UTR
AATCAAATGAATGCAAATGA+TGG 0.576535 5_3:+41202065 None:intergenic
TCATGGATTCAGAATTCCCC+AGG 0.578681 5_3:-41199488 Msa0811790:intron
AAATCTAGCACTGGAATTTG+GGG 0.581436 5_3:-41198225 Msa0811790:CDS
TAGGAGTGGCGTTGCATGTG+TGG 0.582787 5_3:+41198402 None:intergenic
GCGGAGGCACATACCACTGA+GGG 0.587609 5_3:+41202124 None:intergenic
TGTTCACATAAAGATGATCA+AGG 0.588485 5_3:-41198497 Msa0811790:CDS
GCAAGATGATCAGCTCCATA+GGG 0.589366 5_3:+41201819 None:intergenic
GTCATTCATGGAGAAAGTAT+GGG 0.593517 5_3:-41199521 Msa0811790:CDS
TCACATTCCATAACATTACT+CGG 0.594141 5_3:+41198278 None:intergenic
ATGTATCAAACTACATACAT+TGG 0.596361 5_3:-41198428 Msa0811790:CDS
TTGCTTTGGTAAATCTTTAG+GGG 0.600494 5_3:-41197815 Msa0811790:three_prime_UTR
AGAAGTACTTGCTTTAGGAG+TGG 0.607162 5_3:+41198388 None:intergenic
TGGTAACGCAGATGTGGTCA+AGG 0.612777 5_3:-41197848 Msa0811790:three_prime_UTR
GAAATAATTATGCCCAGTGG+CGG 0.625231 5_3:+41202105 None:intergenic
GTGTAATTTCTAAATGTCAG+GGG 0.629102 5_3:-41202160 Msa0811790:five_prime_UTR
CCATGAATGACTATCAACAA+TGG 0.634289 5_3:+41199533 None:intergenic
AAGGTGCTTAAACGCAAATG+TGG 0.642263 5_3:-41197978 Msa0811790:three_prime_UTR
AAGAATTGGGTGGTGCTGCA+TGG 0.653989 5_3:-41197868 Msa0811790:three_prime_UTR
ATTCAAGTGCATCCCCTCAG+TGG 0.667922 5_3:-41202137 Msa0811790:five_prime_UTR
GCTGCATGGTAACGCAGATG+TGG 0.670107 5_3:-41197854 Msa0811790:three_prime_UTR
AAGGGGACACAATAGGTGTG+TGG 0.683944 5_3:-41197707 Msa0811790:three_prime_UTR
TCTCCGAATTCTGAAAACGA+AGG 0.688104 5_3:-41197997 Msa0811790:three_prime_UTR
CGTGCTGAGATCTTTCACTG+AGG 0.697606 5_3:-41201790 Msa0811790:CDS
TAACGCAGATGTGGTCAAGG+AGG 0.699406 5_3:-41197845 Msa0811790:three_prime_UTR
CAATGATTGGAAGAATTGGG+TGG 0.701393 5_3:-41197878 Msa0811790:three_prime_UTR
GGCGGAGGCACATACCACTG+AGG 0.713775 5_3:+41202123 None:intergenic
CGGAGGCACATACCACTGAG+GGG 0.749334 5_3:+41202125 None:intergenic
AGAGAAATAATTATGCCCAG+TGG 0.752161 5_3:+41202102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAAAAAAAAAAAAATG+GGG + chr5_3:41201102-41201121 None:intergenic 10.0%
!! GCTAAAAAAAAAAAAAAAAT+GGG + chr5_3:41201103-41201122 None:intergenic 10.0%
!!! TCGAAAAAAATTAGAATTTT+AGG - chr5_3:41197705-41197724 Msa0811790:three_prime_UTR 15.0%
!!! TTTTTTCTTGGAAAATTAAA+AGG - chr5_3:41197904-41197923 Msa0811790:three_prime_UTR 15.0%
!!! TTTTTCTTGGAAAATTAAAA+GGG - chr5_3:41197905-41197924 Msa0811790:three_prime_UTR 15.0%
!!! ATATTTTGATATACTTCTTT+CGG - chr5_3:41198551-41198570 Msa0811790:intron 15.0%
!!! TAAGCAAAAATCAATTTTTT+AGG - chr5_3:41198583-41198602 Msa0811790:intron 15.0%
!!! ACTTTATTTTTTTTTAAGAG+TGG + chr5_3:41198725-41198744 None:intergenic 15.0%
!! TAAAAAAAATAAACAAGTGA+AGG - chr5_3:41199101-41199120 Msa0811790:intron 15.0%
!! AAAGTAGAATATATTCAATA+TGG - chr5_3:41199186-41199205 Msa0811790:intron 15.0%
!! TATTACATTGAAAATTGAAA+TGG - chr5_3:41199263-41199282 Msa0811790:intron 15.0%
!! ATTACATTGAAAATTGAAAT+GGG - chr5_3:41199264-41199283 Msa0811790:intron 15.0%
!! CTAATTATAAGCTTAAATTA+CGG + chr5_3:41199435-41199454 None:intergenic 15.0%
!!! TAATTTTGACAATGTATAAT+TGG + chr5_3:41199800-41199819 None:intergenic 15.0%
!!! AAGTACTATTTTATAGATTT+TGG - chr5_3:41200219-41200238 Msa0811790:intron 15.0%
!! CAGTTAAAAAATAAAAAGTT+TGG + chr5_3:41200704-41200723 None:intergenic 15.0%
!!! AAATAATTTTGGTTAAGTAA+AGG - chr5_3:41200959-41200978 Msa0811790:intron 15.0%
!!! AATAATTTTGGTTAAGTAAA+GGG - chr5_3:41200960-41200979 Msa0811790:intron 15.0%
!! AATTTCTAATTATGACATTT+GGG + chr5_3:41200990-41201009 None:intergenic 15.0%
!! AAATTTCTAATTATGACATT+TGG + chr5_3:41200991-41201010 None:intergenic 15.0%
!! AACCATTTATAATAAAAACA+CGG - chr5_3:41201072-41201091 Msa0811790:intron 15.0%
!! GGCTAAAAAAAAAAAAAAAA+TGG + chr5_3:41201104-41201123 None:intergenic 15.0%
!! TTATTTATCACTACAAATTA+AGG - chr5_3:41201796-41201815 Msa0811790:CDS 15.0%
!! TATTTATCACTACAAATTAA+GGG - chr5_3:41201797-41201816 Msa0811790:CDS 15.0%
!! TGTGGCTAAAAAAAATTAAT+TGG + chr5_3:41197932-41197951 None:intergenic 20.0%
!!! TATTATCCATTTTATGTATG+TGG + chr5_3:41197950-41197969 None:intergenic 20.0%
!!! ATAATCAAAGAACTTGTTAA+GGG - chr5_3:41197999-41198018 Msa0811790:three_prime_UTR 20.0%
!! CATTCATTAAATGATGTATT+TGG + chr5_3:41198617-41198636 None:intergenic 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG - chr5_3:41198652-41198671 Msa0811790:intron 20.0%
!!! AAGATTTGACTAGTTAAATT+TGG + chr5_3:41198820-41198839 None:intergenic 20.0%
!!! AACTTAAGAAACTATTGATT+TGG - chr5_3:41198895-41198914 Msa0811790:intron 20.0%
!! AGTCTAAAGGAAAAAAATTA+TGG + chr5_3:41199012-41199031 None:intergenic 20.0%
!!! GAAGAATATCATTTTACAAA+AGG - chr5_3:41199299-41199318 Msa0811790:intron 20.0%
!! TACAAAAGGATAACTTATTA+TGG - chr5_3:41199313-41199332 Msa0811790:intron 20.0%
!! ACAAAAGGATAACTTATTAT+GGG - chr5_3:41199314-41199333 Msa0811790:intron 20.0%
!! TTAATCTCATTAATACTAGT+TGG - chr5_3:41199566-41199585 Msa0811790:CDS 20.0%
!!! AACAATGTTTTATGATGATA+TGG + chr5_3:41199920-41199939 None:intergenic 20.0%
!! ATCAGATTACATTTATATGT+AGG + chr5_3:41200016-41200035 None:intergenic 20.0%
!!! TTTTTTATCAAGCAAACAAA+AGG + chr5_3:41200072-41200091 None:intergenic 20.0%
!!! CATATTTAAGATTGATGAAA+TGG + chr5_3:41200106-41200125 None:intergenic 20.0%
!! CATTTCATCAATCTTAAATA+TGG - chr5_3:41200104-41200123 Msa0811790:intron 20.0%
!!! ATTTTACATGAAATAATGAC+AGG - chr5_3:41200261-41200280 Msa0811790:intron 20.0%
!! TAAAGGAAAAAAAAATACCT+GGG + chr5_3:41200419-41200438 None:intergenic 20.0%
!! ATAAAGGAAAAAAAAATACC+TGG + chr5_3:41200420-41200439 None:intergenic 20.0%
!! ATATATTTCTTTGCACATAA+AGG + chr5_3:41200436-41200455 None:intergenic 20.0%
!! AAACACTATCAATTGTATTT+GGG + chr5_3:41200642-41200661 None:intergenic 20.0%
!! AAAACACTATCAATTGTATT+TGG + chr5_3:41200643-41200662 None:intergenic 20.0%
!! TAAGTGTAAATAAGTACAAT+AGG - chr5_3:41200739-41200758 Msa0811790:intron 20.0%
!! ATTTCTAATTATGACATTTG+GGG + chr5_3:41200989-41201008 None:intergenic 20.0%
!!! TATAATTTGTCCTAAGTATT+TGG + chr5_3:41201036-41201055 None:intergenic 20.0%
!! TTAATTACCTTAATCAATTG+TGG - chr5_3:41201277-41201296 Msa0811790:intron 20.0%
!! TAATTAACCACAATTGATTA+AGG + chr5_3:41201287-41201306 None:intergenic 20.0%
!!! GATATTCTTGTTTTATAGTT+AGG + chr5_3:41201575-41201594 None:intergenic 20.0%
!!! TAAGCCAAATATTTTTTTGT+AGG + chr5_3:41201828-41201847 None:intergenic 20.0%
! AATCAAATGAATGCAAATGA+TGG + chr5_3:41197825-41197844 None:intergenic 25.0%
! AAGAAAAAAAAGTAGTAGGT+GGG + chr5_3:41197893-41197912 None:intergenic 25.0%
! TTCCAAGAAAAAAAAGTAGT+AGG + chr5_3:41197897-41197916 None:intergenic 25.0%
!! TTTTAGCCACATACATAAAA+TGG - chr5_3:41197941-41197960 Msa0811790:three_prime_UTR 25.0%
!!! GATAATCAAAGAACTTGTTA+AGG - chr5_3:41197998-41198017 Msa0811790:three_prime_UTR 25.0%
! AATTAGTGAAAGTAGAAAGA+AGG - chr5_3:41198190-41198209 Msa0811790:exon 25.0%
! ATTAGTGAAAGTAGAAAGAA+GGG - chr5_3:41198191-41198210 Msa0811790:exon 25.0%
!!! GTTTTTTTTTCACATGTAGT+AGG - chr5_3:41198278-41198297 Msa0811790:CDS 25.0%
!!! TTGACTTTTTTCTATGAACT+TGG + chr5_3:41198316-41198335 None:intergenic 25.0%
!!! TCAAAAACCCTTATTTTTGT+CGG - chr5_3:41198332-41198351 Msa0811790:CDS 25.0%
! TGCAATGATTTCATGAAATT+GGG - chr5_3:41198370-41198389 Msa0811790:CDS 25.0%
! GAGGTAATTATTTACAAATG+AGG - chr5_3:41198677-41198696 Msa0811790:intron 25.0%
! AATGTAACTTCATGATAGTT+CGG - chr5_3:41198978-41198997 Msa0811790:intron 25.0%
!! ATGACTCAATTAATTTGGAA+CGG + chr5_3:41199064-41199083 None:intergenic 25.0%
! AGCAAATGACTCAATTAATT+TGG + chr5_3:41199069-41199088 None:intergenic 25.0%
! AAACCTAAAATGTAAGCTTA+TGG - chr5_3:41199695-41199714 Msa0811790:intron 25.0%
!! CCTTGACTGTAAAAATTTTA+AGG + chr5_3:41199742-41199761 None:intergenic 25.0%
!! CCTTAAAATTTTTACAGTCA+AGG - chr5_3:41199739-41199758 Msa0811790:intron 25.0%
! AAATGTAATCTGATTGTATG+TGG - chr5_3:41200022-41200041 Msa0811790:intron 25.0%
! AAAGGAAAAAAAAATACCTG+GGG + chr5_3:41200418-41200437 None:intergenic 25.0%
! AAATCTTCTTGAATGTACTT+TGG + chr5_3:41200573-41200592 None:intergenic 25.0%
! AAGAGTTGTTTACTTCATTT+CGG + chr5_3:41200780-41200799 None:intergenic 25.0%
! TCTTAGTGTAGAATGAATAA+TGG - chr5_3:41200928-41200947 Msa0811790:intron 25.0%
! CTTAGTGTAGAATGAATAAT+GGG - chr5_3:41200929-41200948 Msa0811790:intron 25.0%
!! TGGGTGTACAAAAATAATTT+TGG - chr5_3:41200948-41200967 Msa0811790:intron 25.0%
!!! CTCCGTGTTTTTATTATAAA+TGG + chr5_3:41201077-41201096 None:intergenic 25.0%
! ATAAAAATCAACCTTGGAAA+TGG + chr5_3:41201132-41201151 None:intergenic 25.0%
! GATTTGATAAAAATCAACCT+TGG + chr5_3:41201138-41201157 None:intergenic 25.0%
!! TTTTCAAAAATATACCTCAC+AGG - chr5_3:41201355-41201374 Msa0811790:intron 25.0%
! ATGTATCAAACTACATACAT+TGG - chr5_3:41201459-41201478 Msa0811790:intron 25.0%
!!! CCAAATATTTTTTTGTAGGA+AGG + chr5_3:41201824-41201843 None:intergenic 25.0%
! CCTTCCTACAAAAAAATATT+TGG - chr5_3:41201821-41201840 Msa0811790:CDS 25.0%
! TTAACAATGATTGGAAGAAT+TGG - chr5_3:41202005-41202024 Msa0811790:five_prime_UTR 25.0%
! TAACAATGATTGGAAGAATT+GGG - chr5_3:41202006-41202025 Msa0811790:five_prime_UTR 25.0%
! ATGATAAGTCAAACAAATTC+AGG - chr5_3:41202107-41202126 Msa0811790:five_prime_UTR 25.0%
! TGATAAGTCAAACAAATTCA+GGG - chr5_3:41202108-41202127 Msa0811790:five_prime_UTR 25.0%
AGGTGTAATTTCTAAATGTC+AGG - chr5_3:41197725-41197744 Msa0811790:three_prime_UTR 30.0%
GGTGTAATTTCTAAATGTCA+GGG - chr5_3:41197726-41197745 Msa0811790:three_prime_UTR 30.0%
GTGTAATTTCTAAATGTCAG+GGG - chr5_3:41197727-41197746 Msa0811790:three_prime_UTR 30.0%
CAAGAAAAAAAAGTAGTAGG+TGG + chr5_3:41197894-41197913 None:intergenic 30.0%
!!! CACCTACTACTTTTTTTTCT+TGG - chr5_3:41197892-41197911 Msa0811790:three_prime_UTR 30.0%
CTTTCTTTCTAACACTTTCA+GGG + chr5_3:41197977-41197996 None:intergenic 30.0%
ACTTTCTTTCTAACACTTTC+AGG + chr5_3:41197978-41197997 None:intergenic 30.0%
AAATCATCACAACTTGAGTT+TGG + chr5_3:41198143-41198162 None:intergenic 30.0%
AAAATCGCCGACAAAAATAA+GGG + chr5_3:41198342-41198361 None:intergenic 30.0%
GTGCAATGATTTCATGAAAT+TGG - chr5_3:41198369-41198388 Msa0811790:CDS 30.0%
! GTAAAGTTGTTCTAGCTATA+AGG - chr5_3:41198506-41198525 Msa0811790:CDS 30.0%
CTAGCTATAAGGAAATTTGA+AGG - chr5_3:41198517-41198536 Msa0811790:intron 30.0%
ACTAGTCAAATCTTTCTCTA+TGG - chr5_3:41198826-41198845 Msa0811790:intron 30.0%
AGGAAAAAAATTATGGCATG+TGG + chr5_3:41199005-41199024 None:intergenic 30.0%
TAAGTACTCTTGTCAAGTAT+TGG - chr5_3:41199139-41199158 Msa0811790:intron 30.0%
! TTGAAATGGGTCAGATATTT+TGG - chr5_3:41199277-41199296 Msa0811790:intron 30.0%
AAGGATAACTTATTATGGGA+TGG - chr5_3:41199318-41199337 Msa0811790:intron 30.0%
! GTACCATAAGCTTACATTTT+AGG + chr5_3:41199701-41199720 None:intergenic 30.0%
TTAAGGTTGTGTCTTACTTA+TGG + chr5_3:41199725-41199744 None:intergenic 30.0%
! AATTTTTACAGTCAAGGCTT+AGG - chr5_3:41199745-41199764 Msa0811790:intron 30.0%
GTAGTTCAGCTAATAACTAA+GGG + chr5_3:41199864-41199883 None:intergenic 30.0%
AGTAGTTCAGCTAATAACTA+AGG + chr5_3:41199865-41199884 None:intergenic 30.0%
ATGTAGGAAAGTCTATGATA+TGG + chr5_3:41200000-41200019 None:intergenic 30.0%
AAAGAAAATGAAAAACCGCT+TGG + chr5_3:41200180-41200199 None:intergenic 30.0%
TTAAGTTAATTGTTTCCCAC+AGG - chr5_3:41200294-41200313 Msa0811790:intron 30.0%
ATGACTATCAACAATGGTTT+GGG + chr5_3:41200351-41200370 None:intergenic 30.0%
AATGACTATCAACAATGGTT+TGG + chr5_3:41200352-41200371 None:intergenic 30.0%
TTAAACTGACATTTGTAGCA+AGG - chr5_3:41200492-41200511 Msa0811790:intron 30.0%
TAAACTGACATTTGTAGCAA+GGG - chr5_3:41200493-41200512 Msa0811790:intron 30.0%
! TTTTGAATGATCACTTGCAT+AGG + chr5_3:41200548-41200567 None:intergenic 30.0%
TGTCCTAAGTATTTGGATTA+GGG + chr5_3:41201029-41201048 None:intergenic 30.0%
TTGTCCTAAGTATTTGGATT+AGG + chr5_3:41201030-41201049 None:intergenic 30.0%
AATTCAGTTTGGTCAAACTA+GGG + chr5_3:41201229-41201248 None:intergenic 30.0%
AAATTCAGTTTGGTCAAACT+AGG + chr5_3:41201230-41201249 None:intergenic 30.0%
! TTTGACCAAACTGAATTTTG+TGG - chr5_3:41201232-41201251 Msa0811790:intron 30.0%
TCAATAAACTGAACTAGACA+TGG - chr5_3:41201310-41201329 Msa0811790:intron 30.0%
TGTTCACATAAAGATGATCA+AGG - chr5_3:41201390-41201409 Msa0811790:intron 30.0%
TATGTAGTTTGATACATGTC+AGG + chr5_3:41201456-41201475 None:intergenic 30.0%
!! TCATTAGAAGTACTTGCTTT+AGG + chr5_3:41201507-41201526 None:intergenic 30.0%
TAAAGCAAGTACTTCTAATG+AGG - chr5_3:41201506-41201525 Msa0811790:intron 30.0%
!!! TCTTGTTTTATAGTTAGGCT+TGG + chr5_3:41201570-41201589 None:intergenic 30.0%
TCACATTCCATAACATTACT+CGG + chr5_3:41201612-41201631 None:intergenic 30.0%
! AAAATCTAGCACTGGAATTT+GGG - chr5_3:41201661-41201680 Msa0811790:intron 30.0%
!! CTTTTGACTATCAATTCTCA+TGG - chr5_3:41201854-41201873 Msa0811790:CDS 30.0%
TTGCTTGATGTTATTAGCAA+AGG - chr5_3:41201947-41201966 Msa0811790:exon 30.0%
TGCTTGATGTTATTAGCAAA+GGG - chr5_3:41201948-41201967 Msa0811790:exon 30.0%
!! TGTTGCTTTGGTAAATCTTT+AGG - chr5_3:41202070-41202089 Msa0811790:five_prime_UTR 30.0%
! GTTGCTTTGGTAAATCTTTA+GGG - chr5_3:41202071-41202090 Msa0811790:five_prime_UTR 30.0%
TTGCTTTGGTAAATCTTTAG+GGG - chr5_3:41202072-41202091 Msa0811790:five_prime_UTR 30.0%
AGAGAAATAATTATGCCCAG+TGG + chr5_3:41197788-41197807 None:intergenic 35.0%
CTGAAGAAGAATCTTGAGTT+TGG + chr5_3:41198039-41198058 None:intergenic 35.0%
CAAAATCGCCGACAAAAATA+AGG + chr5_3:41198343-41198362 None:intergenic 35.0%
!!! CTTATTTTTGTCGGCGATTT+TGG - chr5_3:41198341-41198360 Msa0811790:CDS 35.0%
TCATGAAATTGGGAACTGTA+CGG - chr5_3:41198380-41198399 Msa0811790:CDS 35.0%
TTGCTTATAATAGTGATCGG+AGG - chr5_3:41198655-41198674 Msa0811790:intron 35.0%
! GGCTTACATTTTAGACTACT+TGG - chr5_3:41198847-41198866 Msa0811790:intron 35.0%
TTCCTTTAGACTTATCAAGC+TGG - chr5_3:41199020-41199039 Msa0811790:intron 35.0%
! ACTCAATTAATTTGGAACGG+AGG + chr5_3:41199061-41199080 None:intergenic 35.0%
AGCAAACTAGCAGACTATTA+CGG - chr5_3:41199652-41199671 Msa0811790:intron 35.0%
! TTACGGGCTTTCTAAAAGTT+AGG - chr5_3:41199669-41199688 Msa0811790:intron 35.0%
TCAAGGCTTAGGAAAAAGTA+TGG - chr5_3:41199756-41199775 Msa0811790:intron 35.0%
ATAACTAAGGGTGAGAATCA+TGG + chr5_3:41199852-41199871 None:intergenic 35.0%
AGAGTAAAGGAGCAATAAAG+AGG + chr5_3:41199957-41199976 None:intergenic 35.0%
TTCAGTTTCGTGTTTACTCT+TGG - chr5_3:41200045-41200064 Msa0811790:intron 35.0%
TTGAGTGTTTCAAATCCAAG+CGG - chr5_3:41200162-41200181 Msa0811790:intron 35.0%
! AACAATGGTTTGGGAAACTA+TGG + chr5_3:41200342-41200361 None:intergenic 35.0%
CCATGAATGACTATCAACAA+TGG + chr5_3:41200357-41200376 None:intergenic 35.0%
!! CCATTGTTGATAGTCATTCA+TGG - chr5_3:41200354-41200373 Msa0811790:intron 35.0%
AGTCATTCATGGAGAAAGTA+TGG - chr5_3:41200365-41200384 Msa0811790:intron 35.0%
! GTCATTCATGGAGAAAGTAT+GGG - chr5_3:41200366-41200385 Msa0811790:intron 35.0%
!! ACATGATTGGTTCTGTTACT+AGG + chr5_3:41200522-41200541 None:intergenic 35.0%
ATTTGGGAAATGCTAACAAG+TGG + chr5_3:41200626-41200645 None:intergenic 35.0%
CAAAATTACACCAAACGAGT+TGG - chr5_3:41200663-41200682 Msa0811790:intron 35.0%
!! ACCAAACGAGTTGGTTTAAT+CGG - chr5_3:41200672-41200691 Msa0811790:intron 35.0%
TTAGCCAAAAACCATTTCCA+AGG - chr5_3:41201118-41201137 Msa0811790:intron 35.0%
! TCAACCTTGGAAATGGTTTT+TGG + chr5_3:41201125-41201144 None:intergenic 35.0%
CAATTTAGATGAGGTTTCAG+TGG + chr5_3:41201175-41201194 None:intergenic 35.0%
! TTTTGTGGGCAATTTAGATG+AGG + chr5_3:41201184-41201203 None:intergenic 35.0%
GTTATTGACAGTTTGGCAAT+CGG + chr5_3:41201207-41201226 None:intergenic 35.0%
AACTAGGGTTATTGACAGTT+TGG + chr5_3:41201214-41201233 None:intergenic 35.0%
ACTGACCACAAAATTCAGTT+TGG + chr5_3:41201240-41201259 None:intergenic 35.0%
!! TTTATAGTTAGGCTTGGTGT+TGG + chr5_3:41201564-41201583 None:intergenic 35.0%
AGAAACTCCGAGTAATGTTA+TGG - chr5_3:41201602-41201621 Msa0811790:intron 35.0%
AGTGTTTCAAAATCTAGCAC+TGG - chr5_3:41201653-41201672 Msa0811790:intron 35.0%
! CAAAATCTAGCACTGGAATT+TGG - chr5_3:41201660-41201679 Msa0811790:intron 35.0%
! AAATCTAGCACTGGAATTTG+GGG - chr5_3:41201662-41201681 Msa0811790:intron 35.0%
CTGCTTCTGTTAACAATGAT+TGG - chr5_3:41201996-41202015 Msa0811790:five_prime_UTR 35.0%
ATAGGAATCGAAAAAAGGAG+AGG - chr5_3:41202143-41202162 Msa0811790:five_prime_UTR 35.0%
GAAATAATTATGCCCAGTGG+CGG + chr5_3:41197785-41197804 None:intergenic 40.0%
AGTAGAAAGAAGGGAAGAAG+AGG - chr5_3:41198200-41198219 Msa0811790:CDS 40.0%
GAAGAGGTTGCTACAAAAGA+AGG - chr5_3:41198216-41198235 Msa0811790:CDS 40.0%
!! CGTATTTGGTTTGAGGTGTA+CGG - chr5_3:41198404-41198423 Msa0811790:CDS 40.0%
!! CGTATTTGGTTTGAGGTGTA+CGG - chr5_3:41198404-41198423 Msa0811790:CDS 40.0%
CTTATAATAGTGATCGGAGG+AGG - chr5_3:41198658-41198677 Msa0811790:intron 40.0%
AGCCAGCTTGATAAGTCTAA+AGG + chr5_3:41199025-41199044 None:intergenic 40.0%
GCAAACTAGCAGACTATTAC+GGG - chr5_3:41199653-41199672 Msa0811790:intron 40.0%
GTGTTGTCGAACAAGAAAGT+TGG + chr5_3:41199891-41199910 None:intergenic 40.0%
AGGCTATCGCTATAGAGTAA+AGG + chr5_3:41199970-41199989 None:intergenic 40.0%
TTACTCTATAGCGATAGCCT+AGG - chr5_3:41199970-41199989 Msa0811790:intron 40.0%
TACTCTATAGCGATAGCCTA+GGG - chr5_3:41199971-41199990 Msa0811790:intron 40.0%
GTATGGGCAGAAGAAAATCA+TGG - chr5_3:41200382-41200401 Msa0811790:intron 40.0%
CTTGCATAGGCTTACATGAT+TGG + chr5_3:41200535-41200554 None:intergenic 40.0%
! GCGGGTTAAGGAATCAAATA+TGG + chr5_3:41200599-41200618 None:intergenic 40.0%
ACCGATTAAACCAACTCGTT+TGG + chr5_3:41200676-41200695 None:intergenic 40.0%
!! AAACGAGTTGGTTTAATCGG+TGG - chr5_3:41200675-41200694 Msa0811790:intron 40.0%
! CCTAAGTATTTGGATTAGGG+AGG + chr5_3:41201026-41201045 None:intergenic 40.0%
CCTCCCTAATCCAAATACTT+AGG - chr5_3:41201023-41201042 Msa0811790:intron 40.0%
!! AGTTTGGCAATCGGTTTTGT+GGG + chr5_3:41201198-41201217 None:intergenic 40.0%
! ATGTGTCTTTTGCACCTGTT+TGG + chr5_3:41201427-41201446 None:intergenic 40.0%
!! AGAAGTACTTGCTTTAGGAG+TGG + chr5_3:41201502-41201521 None:intergenic 40.0%
! TCTCCGAATTCTGAAAACGA+AGG - chr5_3:41201890-41201909 Msa0811790:CDS 40.0%
! GCACCTTCGTTTTCAGAATT+CGG + chr5_3:41201896-41201915 None:intergenic 40.0%
! AAGGTGCTTAAACGCAAATG+TGG - chr5_3:41201909-41201928 Msa0811790:CDS 40.0%
CAATGATTGGAAGAATTGGG+TGG - chr5_3:41202009-41202028 Msa0811790:five_prime_UTR 40.0%
! AAGGAGGATGTATGTTGCTT+TGG - chr5_3:41202058-41202077 Msa0811790:five_prime_UTR 40.0%
GCTGGATAGGAATCGAAAAA+AGG - chr5_3:41202138-41202157 Msa0811790:five_prime_UTR 40.0%
!! AGTAGGTGGGTGTTGTTTGA+GGG + chr5_3:41197880-41197899 None:intergenic 45.0%
!! TAGTAGGTGGGTGTTGTTTG+AGG + chr5_3:41197881-41197900 None:intergenic 45.0%
CTTCAGAACGAGAATCCCTA+TGG - chr5_3:41198053-41198072 Msa0811790:three_prime_UTR 45.0%
GCAAGATGATCAGCTCCATA+GGG + chr5_3:41198071-41198090 None:intergenic 45.0%
AGCAAGATGATCAGCTCCAT+AGG + chr5_3:41198072-41198091 None:intergenic 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_3:41198397-41198416 Msa0811790:CDS 45.0%
TTGAGGTGTACGGACGTATT+TGG - chr5_3:41198414-41198433 Msa0811790:CDS 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_3:41198397-41198416 Msa0811790:CDS 45.0%
TTGAGGTGTACGGACGTATT+TGG - chr5_3:41198414-41198433 Msa0811790:CDS 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_3:41198397-41198416 Msa0811790:CDS 45.0%
ACATAGCCTCAGAATAGTCG+AGG - chr5_3:41199822-41199841 Msa0811790:intron 45.0%
GTCTATGATATGGAAGCCCT+AGG + chr5_3:41199990-41200009 None:intergenic 45.0%
TCATGGATTCAGAATTCCCC+AGG - chr5_3:41200399-41200418 Msa0811790:intron 45.0%
ACTGACATTTGTAGCAAGGG+AGG - chr5_3:41200496-41200515 Msa0811790:intron 45.0%
TGGGAAATGCTAACAAGTGG+AGG + chr5_3:41200623-41200642 None:intergenic 45.0%
TGAGGTTTCAGTGGTAGAAG+AGG + chr5_3:41201166-41201185 None:intergenic 45.0%
!! CAGTTTGGCAATCGGTTTTG+TGG + chr5_3:41201199-41201218 None:intergenic 45.0%
TACCTCACAGGAGTTACTTC+AGG - chr5_3:41201367-41201386 Msa0811790:intron 45.0%
!! CAAATTCAGGGTATTGTCGC+TGG - chr5_3:41202120-41202139 Msa0811790:five_prime_UTR 45.0%
GGAATCGAAAAAAGGAGAGG+TGG - chr5_3:41202146-41202165 Msa0811790:five_prime_UTR 45.0%
ATCGAAAAAAGGAGAGGTGG+AGG - chr5_3:41202149-41202168 Msa0811790:five_prime_UTR 45.0%
ATTCAAGTGCATCCCCTCAG+TGG - chr5_3:41197750-41197769 Msa0811790:three_prime_UTR 50.0%
ATAATTATGCCCAGTGGCGG+AGG + chr5_3:41197782-41197801 None:intergenic 50.0%
GAGGGAAGAGGAGAGAAGAT+GGG + chr5_3:41197862-41197881 None:intergenic 50.0%
TGAGGGAAGAGGAGAGAAGA+TGG + chr5_3:41197863-41197882 None:intergenic 50.0%
!! TGGGTGTTGTTTGAGGGAAG+AGG + chr5_3:41197874-41197893 None:intergenic 50.0%
CGTGCTGAGATCTTTCACTG+AGG - chr5_3:41198097-41198116 Msa0811790:three_prime_UTR 50.0%
GGGAACTGTACGGACGTATT+TGG - chr5_3:41198390-41198409 Msa0811790:CDS 50.0%
AGCCTCAGAATAGTCGAGGA+CGG - chr5_3:41199826-41199845 Msa0811790:intron 50.0%
! GGAAGAGTGCAGCTGAGATA+TGG - chr5_3:41200315-41200334 Msa0811790:intron 50.0%
AATGCTAACAAGTGGAGGCG+CGG + chr5_3:41200618-41200637 None:intergenic 50.0%
GGTTTCAGTGGTAGAAGAGG+TGG + chr5_3:41201163-41201182 None:intergenic 50.0%
CACCTGAAGTAACTCCTGTG+AGG + chr5_3:41201372-41201391 None:intergenic 50.0%
AGGTTGCTCAGCAACCAAAC+AGG - chr5_3:41201410-41201429 Msa0811790:intron 50.0%
!! AAGAATTGGGTGGTGCTGCA+TGG - chr5_3:41202019-41202038 Msa0811790:five_prime_UTR 50.0%
! TGGTAACGCAGATGTGGTCA+AGG - chr5_3:41202039-41202058 Msa0811790:five_prime_UTR 50.0%
TAACGCAGATGTGGTCAAGG+AGG - chr5_3:41202042-41202061 Msa0811790:five_prime_UTR 50.0%
!! TCAGGGTATTGTCGCTGGAT+AGG - chr5_3:41202125-41202144 Msa0811790:five_prime_UTR 50.0%
GAAAAAAGGAGAGGTGGAGG+AGG - chr5_3:41202152-41202171 Msa0811790:five_prime_UTR 50.0%
GGTAAGGAAGGGGACACAAT+AGG - chr5_3:41202173-41202192 Msa0811790:five_prime_UTR 50.0%
AAGGGGACACAATAGGTGTG+TGG - chr5_3:41202180-41202199 Msa0811790:five_prime_UTR 50.0%
CTCAGCTGCACTCTTCCTGT+GGG + chr5_3:41200312-41200331 None:intergenic 55.0%
TCTCAGCTGCACTCTTCCTG+TGG + chr5_3:41200313-41200332 None:intergenic 55.0%
! ATGCTAACAAGTGGAGGCGC+GGG + chr5_3:41200617-41200636 None:intergenic 55.0%
TAGGAGTGGCGTTGCATGTG+TGG + chr5_3:41201488-41201507 None:intergenic 55.0%
! GCTGCATGGTAACGCAGATG+TGG - chr5_3:41202033-41202052 Msa0811790:five_prime_UTR 55.0%
AAGGAGAGGTGGAGGAGGTA+AGG - chr5_3:41202157-41202176 Msa0811790:five_prime_UTR 55.0%
AGAGGTGGAGGAGGTAAGGA+AGG - chr5_3:41202161-41202180 Msa0811790:five_prime_UTR 55.0%
GAGGTGGAGGAGGTAAGGAA+GGG - chr5_3:41202162-41202181 Msa0811790:five_prime_UTR 55.0%
AGGTGGAGGAGGTAAGGAAG+GGG - chr5_3:41202163-41202182 Msa0811790:five_prime_UTR 55.0%
! CGGAGGCACATACCACTGAG+GGG + chr5_3:41197765-41197784 None:intergenic 60.0%
! GCGGAGGCACATACCACTGA+GGG + chr5_3:41197766-41197785 None:intergenic 60.0%
TGGTATGTGCCTCCGCCACT+GGG - chr5_3:41197770-41197789 Msa0811790:three_prime_UTR 60.0%
GGCCGTCCTCGACTATTCTG+AGG + chr5_3:41199831-41199850 None:intergenic 60.0%
! ACAAGTGGAGGCGCGGGTTA+AGG + chr5_3:41200611-41200630 None:intergenic 60.0%
! GGCGGAGGCACATACCACTG+AGG + chr5_3:41197767-41197786 None:intergenic 65.0%
GTGGTATGTGCCTCCGCCAC+TGG - chr5_3:41197769-41197788 Msa0811790:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 41197704 41202205 41197704 ID=Msa0811790;Name=Msa0811790
chr5_3 mRNA 41197704 41202205 41197704 ID=Msa0811790-mRNA-1;Parent=Msa0811790;Name=Msa0811790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=256|1|1|1|1|1|3|492|239
chr5_3 exon 41197704 41198532 41197704 ID=Msa0811790-mRNA-1:exon:12703;Parent=Msa0811790-mRNA-1
chr5_3 exon 41199489 41199593 41199489 ID=Msa0811790-mRNA-1:exon:12702;Parent=Msa0811790-mRNA-1
chr5_3 exon 41201672 41202205 41201672 ID=Msa0811790-mRNA-1:exon:12701;Parent=Msa0811790-mRNA-1
chr5_3 five_prime_UTR 41201950 41202205 41201950 ID=Msa0811790-mRNA-1:five_prime_utr;Parent=Msa0811790-mRNA-1
chr5_3 CDS 41201672 41201949 41201672 ID=Msa0811790-mRNA-1:cds;Parent=Msa0811790-mRNA-1
chr5_3 CDS 41199489 41199593 41199489 ID=Msa0811790-mRNA-1:cds;Parent=Msa0811790-mRNA-1
chr5_3 CDS 41198196 41198532 41198196 ID=Msa0811790-mRNA-1:cds;Parent=Msa0811790-mRNA-1
chr5_3 three_prime_UTR 41197704 41198195 41197704 ID=Msa0811790-mRNA-1:three_prime_utr;Parent=Msa0811790-mRNA-1
Gene Sequence

>Msa0811790

ATGGATAATAATATCCCTGAAAGTGTTAGAAAGAAAGTGATAATCAAAGAACTTGTTAAGGGTCAAGAAGCTGCAACCAAACTCAAGATTCTTCTTCAGAACGAGAATCCCTATGGAGCTGATCATCTTGCTGCAAACGTGCTGAGATCTTTCACTGAGGCTCTTTCTATTATCTCTCAACCAAACTCAAGTTGTGATGATTTTCTGAATCTGATTAAATCTGCAGATTCAATTAGTGAAAGTAGAAAGAAGGGAAGAAGAGGTTGCTACAAAAGAAGGAAGAGTGCAGCTGAGATATGGACCATAGTTTCCCAAACCATTGTTGATAGTCATTCATGGAGAAAGTATGGGCAGAAGAAAATCATGGATTCAGAATTCCCCAGGAGTTACTTCAGGTGTTCACATAAAGATGATCAAGGTTGCTCAGCAACCAAACAGGTGCAAAAGACACATGACAATCCTGACATGTATCAAACTACATACATTGGCATCCACACATGCAACGCCACTCCTAAAGCAAGTACTTCTAATGAGGCAATATTTGTGAATTCTGATGCTGAAGTAACACCAACACCAAGCCTAACTATAAAACAAGAATATCTCAAAGAAGAAACTCCGAGTAATGTTATGGAATGTGATGATAATGCAGATGATATGCTAGTGTTTCAAAATCTAGCACTGGAATTTGGGGACATTGAATTCAACTTTGATGAAAATTAA
Protein sequence

>Msa0811790

MDNNIPESVRKKVIIKELVKGQEAATKLKILLQNENPYGADHLAANVLRSFTEALSIISQPNSSCDDFLNLIKSADSISESRKKGRRGCYKRRKSAAEIWTIVSQTIVDSHSWRKYGQKKIMDSEFPRSYFRCSHKDDQGCSATKQVQKTHDNPDMYQTTYIGIHTCNATPKASTSNEAIFVNSDAEVTPTPSLTIKQEYLKEETPSNVMECDDNADDMLVFQNLALEFGDIEFNFDEN*