AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0774240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774240 MtrunA17_Chr5g0428351 96.250 240 5 3 1 240 78 313 1.53e-169 469
Msa0774240 MtrunA17_Chr3g0128671 43.511 262 96 13 20 238 23 275 3.91e-48 160
Msa0774240 MtrunA17_Chr7g0244981 38.793 232 114 9 1 206 1 230 3.10e-40 139
Msa0774240 MtrunA17_Chr7g0244971 41.341 179 89 4 4 167 5 182 2.57e-38 135
Msa0774240 MtrunA17_Chr8g0334541 42.138 159 86 3 15 168 6 163 2.87e-34 124
Msa0774240 MtrunA17_Chr8g0350621 39.634 164 87 5 15 167 8 170 1.71e-31 116
Msa0774240 MtrunA17_Chr2g0315361 41.667 120 66 2 92 207 131 250 7.13e-25 100
Msa0774240 MtrunA17_Chr2g0315371 29.302 215 121 5 5 188 7 221 2.28e-24 98.6
Msa0774240 MtrunA17_Chr2g0315381 40.816 98 57 1 92 188 127 224 1.47e-23 96.7
Msa0774240 MtrunA17_Chr7g0275531 32.571 175 96 6 10 167 8 177 7.76e-23 94.7
Msa0774240 MtrunA17_Chr8g0347251 50.685 73 36 0 101 173 129 201 1.62e-20 88.6
Msa0774240 MtrunA17_Chr3g0126391 28.358 268 150 9 12 240 5 269 2.50e-19 85.5
Msa0774240 MtrunA17_Chr8g0387981 29.834 181 101 4 13 167 11 191 1.13e-17 80.9
Msa0774240 MtrunA17_Chr8g0387501 50.769 65 30 1 101 165 122 184 1.43e-14 71.2
Msa0774240 MtrunA17_Chr7g0224801 50.000 58 26 1 109 166 94 148 3.66e-14 68.2
Msa0774240 MtrunA17_Chr5g0418781 32.653 147 77 8 73 213 91 221 8.33e-14 69.3
Msa0774240 MtrunA17_Chr4g0071521 42.857 84 39 2 89 165 219 300 9.69e-14 69.3
Msa0774240 MtrunA17_Chr1g0147881 42.857 84 39 3 89 165 236 317 3.23e-13 68.2
Msa0774240 MtrunA17_Chr1g0202461 41.250 80 40 2 91 165 239 316 1.12e-12 66.6
Msa0774240 MtrunA17_Chr5g0431811 39.189 74 41 1 109 182 673 742 1.54e-12 66.6
Msa0774240 MtrunA17_Chr5g0401821 41.463 82 46 1 84 165 175 254 2.31e-12 65.1
Msa0774240 MtrunA17_Chr2g0293481 34.074 135 70 4 43 165 195 322 4.04e-12 65.1
Msa0774240 MtrunA17_Chr8g0348311 47.541 61 30 1 109 169 156 214 6.47e-12 64.3
Msa0774240 MtrunA17_Chr4g0051881 36.471 85 51 1 107 191 177 258 7.11e-12 64.3
Msa0774240 MtrunA17_Chr7g0238921 46.032 63 31 1 109 171 125 184 7.52e-12 63.9
Msa0774240 MtrunA17_Chr1g0194481 42.647 68 35 2 109 176 159 222 1.68e-11 63.2
Msa0774240 MtrunA17_Chr2g0284321 32.061 131 64 5 109 234 36 146 1.86e-11 61.6
Msa0774240 MtrunA17_Chr8g0386241 37.333 75 43 2 109 183 104 174 2.00e-11 60.8
Msa0774240 MtrunA17_Chr1g0184691 38.372 86 51 1 86 171 271 354 2.60e-11 62.8
Msa0774240 MtrunA17_Chr4g0053281 39.759 83 48 1 83 165 241 321 3.31e-11 62.0
Msa0774240 MtrunA17_Chr5g0443131 30.328 122 77 3 107 226 156 271 3.57e-11 62.0
Msa0774240 MtrunA17_Chr8g0379461 32.031 128 62 3 109 236 77 179 8.44e-11 60.1
Msa0774240 MtrunA17_Chr2g0294231 42.029 69 36 2 109 177 204 268 9.72e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774240 AT3G56400.1 39.823 226 100 9 1 200 1 216 6.60e-41 142
Msa0774240 AT2G40750.1 36.283 226 88 9 2 178 4 222 5.21e-34 125
Msa0774240 AT1G66550.1 34.842 221 127 9 15 222 10 226 1.72e-26 103
Msa0774240 AT1G66550.2 33.333 228 116 9 15 222 10 221 1.64e-25 100
Msa0774240 AT5G01900.1 38.095 168 82 5 15 167 9 169 2.14e-25 100
Msa0774240 AT2G46400.1 31.658 199 110 7 9 189 3 193 7.57e-24 97.4
Msa0774240 AT1G66600.1 31.674 221 128 6 15 222 10 220 2.17e-23 95.1
Msa0774240 AT1G66560.1 31.628 215 127 7 15 216 10 217 1.21e-21 90.5
Msa0774240 AT5G22570.1 33.908 174 105 3 15 182 11 180 1.75e-21 90.9
Msa0774240 AT5G24110.1 35.762 151 72 4 41 176 41 181 2.22e-21 90.9
Msa0774240 AT2G40740.1 44.330 97 43 3 91 176 147 243 9.78e-21 89.0
Msa0774240 AT2G40740.3 44.330 97 43 3 91 176 156 252 1.22e-20 89.0
Msa0774240 AT1G80590.1 30.093 216 127 4 15 228 10 203 2.58e-20 86.7
Msa0774240 AT4G23810.1 39.640 111 64 1 109 219 159 266 7.78e-20 87.0
Msa0774240 AT4G11070.2 32.335 167 99 5 11 168 8 169 3.47e-19 84.3
Msa0774240 AT4G11070.1 53.333 60 28 0 109 168 142 201 6.52e-18 81.6
Msa0774240 AT5G45260.1 42.308 78 42 1 91 165 1188 1265 3.06e-15 75.1
Msa0774240 AT5G52830.1 36.190 105 45 2 109 193 166 268 2.03e-13 68.9
Msa0774240 AT4G31550.1 40.698 86 49 1 83 168 221 304 1.37e-12 66.6
Msa0774240 AT4G23550.1 37.234 94 53 2 107 200 139 226 2.41e-12 65.9
Msa0774240 AT1G29280.1 44.928 69 36 1 109 177 75 141 3.08e-12 65.1
Msa0774240 AT5G49520.1 46.552 58 28 1 109 166 222 276 4.45e-12 65.5
Msa0774240 AT1G30650.1 30.769 182 77 5 78 216 179 354 4.49e-12 65.5
Msa0774240 AT5G13080.1 44.828 58 29 1 109 166 68 122 5.42e-12 62.0
Msa0774240 AT4G31550.2 40.000 85 49 1 84 168 221 303 8.31e-12 64.3
Msa0774240 AT3G01970.1 44.828 58 29 1 109 166 66 120 1.14e-11 61.2
Msa0774240 AT2G34830.1 35.955 89 44 2 88 165 184 270 1.29e-11 63.9
Msa0774240 AT2G34830.2 40.230 87 38 3 91 165 195 279 1.55e-11 63.9
Msa0774240 AT2G46130.1 38.462 91 45 3 75 165 5 84 1.77e-11 59.7
Msa0774240 AT1G69310.4 43.750 64 32 2 107 170 146 205 1.98e-11 62.8
Msa0774240 AT1G69310.2 43.750 64 32 2 107 170 146 205 1.98e-11 62.8
Msa0774240 AT1G69310.1 43.750 64 32 2 107 170 146 205 1.98e-11 62.8
Msa0774240 AT4G01250.1 35.354 99 60 3 69 165 87 183 2.38e-11 62.8
Msa0774240 AT1G64000.1 43.860 57 29 1 109 165 115 168 3.30e-11 61.2
Msa0774240 AT2G25000.2 42.466 73 39 2 104 176 99 168 3.73e-11 61.6
Msa0774240 AT2G25000.4 42.466 73 39 2 104 176 99 168 3.73e-11 61.6
Msa0774240 AT2G23320.1 39.773 88 44 2 85 165 210 295 4.34e-11 62.0
Msa0774240 AT2G47260.1 36.471 85 49 2 84 166 148 229 5.49e-11 62.0
Msa0774240 AT2G37260.1 35.294 85 52 1 81 165 322 403 5.52e-11 62.4
Msa0774240 AT2G25000.3 42.466 73 39 2 104 176 121 190 5.66e-11 61.2
Msa0774240 AT2G25000.1 42.466 73 39 2 104 176 142 211 5.70e-11 61.6
Msa0774240 AT5G41570.1 33.696 92 52 2 80 165 64 152 6.19e-11 60.1
Msa0774240 AT2G37260.3 35.294 85 52 1 81 165 242 323 8.43e-11 61.6
Msa0774240 AT2G37260.2 35.294 85 52 1 81 165 240 321 8.78e-11 61.2
Msa0774240 AT5G45050.1 38.043 92 39 4 79 165 1157 1235 9.20e-11 62.0
Msa0774240 AT5G45050.4 38.043 92 39 4 79 165 1018 1096 9.59e-11 62.0

Find 75 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTATCACTACAAATTA+AGG 0.130880 5_2:-50198733 Msa0774240:three_prime_UTR
CAAAATCTAGCACTGGAATT+TGG 0.136957 5_2:-50198869 Msa0774240:CDS
TGTTGCTTTGGTAAATCTTT+AGG 0.163085 5_2:-50198459 Msa0774240:three_prime_UTR
ACTTTCTTTCTAACACTTTC+AGG 0.226424 5_2:+50202867 None:intergenic
ATGATAAGTCAAACAAATTC+AGG 0.241556 5_2:-50198422 Msa0774240:three_prime_UTR
AAAATCTAGCACTGGAATTT+GGG 0.252381 5_2:-50198868 Msa0774240:CDS
AATCATTCATGGAGAAAGTA+TGG 0.268191 5_2:-50200325 Msa0774240:CDS
TCATTAGAAGTACTTGCTTT+AGG 0.273585 5_2:+50199028 None:intergenic
GTTGCTTTGGTAAATCTTTA+GGG 0.281655 5_2:-50198458 Msa0774240:three_prime_UTR
CTGCTTCTGTTAACAATGAT+TGG 0.317426 5_2:-50198533 Msa0774240:three_prime_UTR
AAGTGTTCATTATTTCTCTA+AGG 0.323403 5_2:-50203072 Msa0774240:five_prime_UTR
CTGAAGAAGAATCTTGAGTT+TGG 0.329999 5_2:+50202806 None:intergenic
AATGATTATCAACAATGGTT+TGG 0.347556 5_2:+50200341 None:intergenic
AAATCATCACAACTTGAGTT+TGG 0.348658 5_2:+50202702 None:intergenic
TGAGGGAAGAGGAGAGAAGA+TGG 0.354426 5_2:+50202982 None:intergenic
ATGATTATCAACAATGGTTT+GGG 0.360761 5_2:+50200342 None:intergenic
CCATTGTTGATAATCATTCA+TGG 0.368964 5_2:-50200336 Msa0774240:CDS
TTAACAATGATTGGAAGAAT+TGG 0.370421 5_2:-50198524 Msa0774240:three_prime_UTR
AGAGGTGGAGGAGGTAAGGA+AGG 0.377323 5_2:-50198368 Msa0774240:three_prime_UTR
TATTTATCACTACAAATTAA+GGG 0.383213 5_2:-50198732 Msa0774240:three_prime_UTR
ATAGTTAGGCTTGGTGTTGT+TGG 0.389762 5_2:+50198971 None:intergenic
GGAAGAGTGCAGCTGAGATA+TGG 0.391667 5_2:-50200375 Msa0774240:CDS
AACAATGGTTTGGGAAACTA+TGG 0.395929 5_2:+50200351 None:intergenic
ACACAATAGGTGTGTGGCGA+TGG 0.402805 5_2:-50198343 None:intergenic
AGTAGGTGGGTGTTGTTTGA+GGG 0.407885 5_2:+50202965 None:intergenic
AGAAACTCCGAGTAATGTTA+TGG 0.412327 5_2:-50198927 Msa0774240:CDS
AAGGAGAGGTGGAGGAGGTA+AGG 0.418391 5_2:-50198372 Msa0774240:three_prime_UTR
TAGTAGGTGGGTGTTGTTTG+AGG 0.425768 5_2:+50202964 None:intergenic
AAGGAGGATGTATGTTGCTT+TGG 0.428733 5_2:-50198471 Msa0774240:three_prime_UTR
ATTAGTGAAAGTAGAAAGAA+GGG 0.442638 5_2:-50202651 Msa0774240:CDS
CTTTCTTTCTAACACTTTCA+GGG 0.446465 5_2:+50202868 None:intergenic
TACCTCACAGGAGTTACTTC+AGG 0.451478 5_2:-50199165 Msa0774240:intron
CAAATTCAGGGTATTGTCGC+TGG 0.454913 5_2:-50198409 Msa0774240:three_prime_UTR
AGGTGGAGGAGGTAAGGAAG+GGG 0.455461 5_2:-50198366 Msa0774240:three_prime_UTR
TGCTTGATGTTATTAGCAAA+GGG 0.461289 5_2:-50198581 Msa0774240:three_prime_UTR
AATTAGTGAAAGTAGAAAGA+AGG 0.462260 5_2:-50202652 Msa0774240:CDS
GGTAAGGAAGGGGACACAAT+AGG 0.464902 5_2:-50198356 Msa0774240:three_prime_UTR
TAACAATGATTGGAAGAATT+GGG 0.468611 5_2:-50198523 Msa0774240:three_prime_UTR
TGGGTGTTGTTTGAGGGAAG+AGG 0.471972 5_2:+50202971 None:intergenic
GATAATCAAAGAACTTGTAA+AGG 0.473711 5_2:-50202844 Msa0774240:CDS
TATGTAGTTTGATACATGTC+AGG 0.475973 5_2:+50199079 None:intergenic
ATAATCAAAGAACTTGTAAA+GGG 0.477175 5_2:-50202843 Msa0774240:CDS
GAGGTGGAGGAGGTAAGGAA+GGG 0.485435 5_2:-50198367 Msa0774240:three_prime_UTR
TTGCTTGATGTTATTAGCAA+AGG 0.487303 5_2:-50198582 Msa0774240:three_prime_UTR
GAGGGAAGAGGAGAGAAGAT+GGG 0.490627 5_2:+50202983 None:intergenic
GAAGAGGTTGCTACAAAAGA+AGG 0.499456 5_2:-50202626 Msa0774240:intron
AGGTTGCTCAGCAACCAAAC+AGG 0.515216 5_2:-50199122 Msa0774240:CDS
TCAGGGTATTGTCGCTGGAT+AGG 0.523072 5_2:-50198404 Msa0774240:three_prime_UTR
CTTCAGAACGAGAATCCCTA+TGG 0.526631 5_2:-50202789 Msa0774240:CDS
AGTAGAAAGAAGGGAAGAAG+AGG 0.527985 5_2:-50202642 Msa0774240:CDS
TAAAGCAAGTACTTCTAATG+AGG 0.529120 5_2:-50199026 Msa0774240:CDS
AGTGTTTCAAAATCTAGCAC+TGG 0.543569 5_2:-50198876 Msa0774240:CDS
TGATAAGTCAAACAAATTCA+GGG 0.552622 5_2:-50198421 Msa0774240:three_prime_UTR
GTATGGGCAGAAGAAAATCA+TGG 0.554126 5_2:-50200308 Msa0774240:CDS
AGCAAGATGATCAGCTCCAT+AGG 0.557040 5_2:+50202773 None:intergenic
CCATGAATGATTATCAACAA+TGG 0.572348 5_2:+50200336 None:intergenic
TCATGGATTCTGAATTCCCC+AGG 0.575030 5_2:-50200291 Msa0774240:intron
AAATCTAGCACTGGAATTTG+GGG 0.581436 5_2:-50198867 Msa0774240:CDS
TAGGAGTGGCGTTGCATGTG+TGG 0.582787 5_2:+50199047 None:intergenic
TGTTCACATAAAGATGATCA+AGG 0.588485 5_2:-50199142 Msa0774240:CDS
GCAAGATGATCAGCTCCATA+GGG 0.589366 5_2:+50202774 None:intergenic
ATCATTCATGGAGAAAGTAT+GGG 0.593517 5_2:-50200324 Msa0774240:CDS
TCACATTCCATAACATTACT+CGG 0.594141 5_2:+50198920 None:intergenic
TGGTAACGCATATGTGGTCA+AGG 0.594322 5_2:-50198490 Msa0774240:three_prime_UTR
ATGTATCAAACTACATACAT+TGG 0.596361 5_2:-50199073 Msa0774240:CDS
TTGCTTTGGTAAATCTTTAG+GGG 0.600494 5_2:-50198457 Msa0774240:three_prime_UTR
AGAAGTACTTGCTTTAGGAG+TGG 0.607162 5_2:+50199033 None:intergenic
GCTGCATGGTAACGCATATG+TGG 0.622879 5_2:-50198496 Msa0774240:three_prime_UTR
AAGGTGCTTAAACGCAAATG+TGG 0.642263 5_2:-50198620 Msa0774240:three_prime_UTR
AAGAATTGGGTGGTGCTGCA+TGG 0.653989 5_2:-50198510 Msa0774240:three_prime_UTR
AAGGGGACACAATAGGTGTG+TGG 0.683944 5_2:-50198349 Msa0774240:three_prime_UTR
TCTCCAAATTCTGAAAACGA+AGG 0.688104 5_2:-50198639 Msa0774240:three_prime_UTR
CGTGCTGAGATCTTTCACTG+AGG 0.697606 5_2:-50202745 Msa0774240:CDS
CAATGATTGGAAGAATTGGG+TGG 0.701393 5_2:-50198520 Msa0774240:three_prime_UTR
TAACGCATATGTGGTCAAGG+AGG 0.716547 5_2:-50198487 Msa0774240:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTATAAT+AGG + chr5_2:50198378-50198397 None:intergenic 0.0%
!!! TTTTTTTTTTTATAATAGGA+GGG + chr5_2:50198374-50198393 None:intergenic 10.0%
!!! TTTTTTTTTTTTATAATAGG+AGG + chr5_2:50198375-50198394 None:intergenic 10.0%
!!! TTTTTTCTTGGAAAATTAAA+AGG - chr5_2:50198530-50198549 Msa0774240:three_prime_UTR 15.0%
!!! TTTTTCTTGGAAAATTAAAA+GGG - chr5_2:50198531-50198550 Msa0774240:three_prime_UTR 15.0%
!!! TAAGCAAAAATCAATTTTTT+AGG - chr5_2:50199206-50199225 Msa0774240:intron 15.0%
!!! ACTTTATTTTTTTTTAAGAG+TGG + chr5_2:50199348-50199367 None:intergenic 15.0%
!! TAAAAAAAATAAACAAGTGA+AGG - chr5_2:50199723-50199742 Msa0774240:intron 15.0%
!! AAAGTAGAATATATTCAATA+TGG - chr5_2:50199808-50199827 Msa0774240:intron 15.0%
!! TATTACATTGAAAATTGAAA+TGG - chr5_2:50199883-50199902 Msa0774240:intron 15.0%
!! ATTACATTGAAAATTGAAAT+GGG - chr5_2:50199884-50199903 Msa0774240:intron 15.0%
!! CTAATTATAAGCTTAAATTA+CGG + chr5_2:50200055-50200074 None:intergenic 15.0%
!! AAAAAAAAAACATTTACCTA+TGG + chr5_2:50200435-50200454 None:intergenic 15.0%
!!! AAGTACTATTTTATAGATTT+TGG - chr5_2:50200997-50201016 Msa0774240:intron 15.0%
!!! AAATAATTTTGGTTAAGTAA+AGG - chr5_2:50201897-50201916 Msa0774240:intron 15.0%
!!! AATAATTTTGGTTAAGTAAA+GGG - chr5_2:50201898-50201917 Msa0774240:intron 15.0%
!! AATTTCTAATTATGACATTT+GGG + chr5_2:50201928-50201947 None:intergenic 15.0%
!! AAATTTCTAATTATGACATT+TGG + chr5_2:50201929-50201948 None:intergenic 15.0%
!! AACCATTTATAATAAAAACA+CGG - chr5_2:50202010-50202029 Msa0774240:intron 15.0%
!! TTTGGCTAAAAAAAAAAAAT+GGG + chr5_2:50202041-50202060 None:intergenic 15.0%
!!! TTTTGGCTAAAAAAAAAAAA+TGG + chr5_2:50202042-50202061 None:intergenic 15.0%
!! TTATTTATCACTACAAATTA+AGG - chr5_2:50202735-50202754 Msa0774240:CDS 15.0%
!! TATTTATCACTACAAATTAA+GGG - chr5_2:50202736-50202755 Msa0774240:CDS 15.0%
!!! TATTATCCATTTTATGTATG+TGG + chr5_2:50198576-50198595 None:intergenic 20.0%
!! ATAATCAAAGAACTTGTAAA+GGG - chr5_2:50198625-50198644 Msa0774240:three_prime_UTR 20.0%
!! CATTCATTAAATGATGTATT+TGG + chr5_2:50199240-50199259 None:intergenic 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG - chr5_2:50199275-50199294 Msa0774240:intron 20.0%
!!! AAGATTTGACTAGTTAAATT+TGG + chr5_2:50199443-50199462 None:intergenic 20.0%
!!! AACTTAAGAAACTATTGATT+TGG - chr5_2:50199518-50199537 Msa0774240:intron 20.0%
!! TAGATATCAACTAATTAACT+TGG + chr5_2:50199545-50199564 None:intergenic 20.0%
!!! GAAGAATATCATTTTACAAA+AGG - chr5_2:50199919-50199938 Msa0774240:intron 20.0%
!! TACAAAAGGATAACTTATTA+TGG - chr5_2:50199933-50199952 Msa0774240:intron 20.0%
!! ACAAAAGGATAACTTATTAT+GGG - chr5_2:50199934-50199953 Msa0774240:intron 20.0%
!! TTAATCTCATTAATACTAGT+TGG - chr5_2:50200186-50200205 Msa0774240:intron 20.0%
!!! AACAATGTTTTATGATGATA+TGG + chr5_2:50200682-50200701 None:intergenic 20.0%
!!! CATATTTAAGATTGATGAAA+TGG + chr5_2:50200882-50200901 None:intergenic 20.0%
!! CATTTCATCAATCTTAAATA+TGG - chr5_2:50200880-50200899 Msa0774240:intron 20.0%
!! AAGGAAAAAAAAAAATACCT+GGG + chr5_2:50201197-50201216 None:intergenic 20.0%
!! AAAGGAAAAAAAAAAATACC+TGG + chr5_2:50201198-50201217 None:intergenic 20.0%
!! TGCATGATTTATACATTATT+TGG - chr5_2:50201253-50201272 Msa0774240:intron 20.0%
!! AAACACTATCAATTGTATTT+GGG + chr5_2:50201453-50201472 None:intergenic 20.0%
!! AAAACACTATCAATTGTATT+TGG + chr5_2:50201454-50201473 None:intergenic 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + chr5_2:50201597-50201616 None:intergenic 20.0%
!! TAAGTGTAAATAAGTACAAT+AGG - chr5_2:50201679-50201698 Msa0774240:intron 20.0%
!! ATTTCTAATTATGACATTTG+GGG + chr5_2:50201927-50201946 None:intergenic 20.0%
!!! TATAATTTGTCCTAAGTATT+TGG + chr5_2:50201974-50201993 None:intergenic 20.0%
!! TTGGCTAAAAAAAAAAAATG+GGG + chr5_2:50202040-50202059 None:intergenic 20.0%
!! TTTGATAAAAATCAAAACCT+TGG + chr5_2:50202072-50202091 None:intergenic 20.0%
!! TTAATTACCTTAATCAATTG+TGG - chr5_2:50202213-50202232 Msa0774240:intron 20.0%
!! TAATTAACCACAATTGATTA+AGG + chr5_2:50202223-50202242 None:intergenic 20.0%
!!! GATATTCTTGTTTTATAGTT+AGG + chr5_2:50202514-50202533 None:intergenic 20.0%
!!! TAAGCCAAATATTTTTTTGT+AGG + chr5_2:50202767-50202786 None:intergenic 20.0%
!! AAGTGTTCATTATTTCTCTA+AGG - chr5_2:50198396-50198415 Msa0774240:three_prime_UTR 25.0%
! AAGAAAAAAAAGTAGTAGGT+GGG + chr5_2:50198519-50198538 None:intergenic 25.0%
! TTCCAAGAAAAAAAAGTAGT+AGG + chr5_2:50198523-50198542 None:intergenic 25.0%
! TGTGGCTAAAAACAATTAAT+TGG + chr5_2:50198558-50198577 None:intergenic 25.0%
!! TTTTAGCCACATACATAAAA+TGG - chr5_2:50198567-50198586 Msa0774240:three_prime_UTR 25.0%
! GATAATCAAAGAACTTGTAA+AGG - chr5_2:50198624-50198643 Msa0774240:three_prime_UTR 25.0%
! AATTAGTGAAAGTAGAAAGA+AGG - chr5_2:50198816-50198835 Msa0774240:three_prime_UTR 25.0%
! ATTAGTGAAAGTAGAAAGAA+GGG - chr5_2:50198817-50198836 Msa0774240:three_prime_UTR 25.0%
!!! GTTTTTTTTTCACATGTAGT+AGG - chr5_2:50198904-50198923 Msa0774240:CDS 25.0%
!!! TTGACTTTTTTCTATGAACT+TGG + chr5_2:50198942-50198961 None:intergenic 25.0%
!!! TCAAAAACCCTTATTTTTGT+CGG - chr5_2:50198958-50198977 Msa0774240:CDS 25.0%
! TGCAATGATTTCATGAAATT+GGG - chr5_2:50198996-50199015 Msa0774240:CDS 25.0%
! GAGGTAATTATTTACAAATG+AGG - chr5_2:50199300-50199319 Msa0774240:intron 25.0%
! AATGTAACTTCATGATAGTT+CGG - chr5_2:50199601-50199620 Msa0774240:intron 25.0%
! AGTCTAGAGGAAAAAAATTA+TGG + chr5_2:50199635-50199654 None:intergenic 25.0%
! AGCAAATGACTCAATTAATT+TGG + chr5_2:50199691-50199710 None:intergenic 25.0%
! AAACCTAAAATGTAAGCTTA+TGG - chr5_2:50200315-50200334 Msa0774240:CDS 25.0%
!! CCTTGACTGTAAAAATTTTA+AGG + chr5_2:50200362-50200381 None:intergenic 25.0%
!! CCTTAAAATTTTTACAGTCA+AGG - chr5_2:50200359-50200378 Msa0774240:CDS 25.0%
! ATCAGATTACATTTACATGT+AGG + chr5_2:50200789-50200808 None:intergenic 25.0%
! AAATGTAATCTGATTGTATG+TGG - chr5_2:50200795-50200814 Msa0774240:intron 25.0%
!!! CTTTTTTATCAAGCAAACAA+AGG + chr5_2:50200849-50200868 None:intergenic 25.0%
! ATGATTATCAACAATGGTTT+GGG + chr5_2:50201129-50201148 None:intergenic 25.0%
! AATGATTATCAACAATGGTT+TGG + chr5_2:50201130-50201149 None:intergenic 25.0%
! AGGAAAAAAAAAAATACCTG+GGG + chr5_2:50201196-50201215 None:intergenic 25.0%
! ATATATTTCTTTGCACGTAA+AGG + chr5_2:50201216-50201235 None:intergenic 25.0%
! TCCTATTTATAAGAGAAACT+TGG - chr5_2:50201534-50201553 Msa0774240:intron 25.0%
! CCTATTTATAAGAGAAACTT+GGG - chr5_2:50201535-50201554 Msa0774240:intron 25.0%
! AAGAGTTGTTTACTTCATTT+CGG + chr5_2:50201720-50201739 None:intergenic 25.0%
! TCTTAGTGTAGAATGAATAA+TGG - chr5_2:50201866-50201885 Msa0774240:intron 25.0%
! CTTAGTGTAGAATGAATAAT+GGG - chr5_2:50201867-50201886 Msa0774240:intron 25.0%
!! TGGGTGTACAAAAATAATTT+TGG - chr5_2:50201886-50201905 Msa0774240:intron 25.0%
!!! CTCCGTGTTTTTATTATAAA+TGG + chr5_2:50202015-50202034 None:intergenic 25.0%
!! AAAACCTTGGAAATTGTTTT+TGG + chr5_2:50202059-50202078 None:intergenic 25.0%
!! TTTTCAAAAATATACCTCAC+AGG - chr5_2:50202291-50202310 Msa0774240:intron 25.0%
! ATGTATCAAACTACATACAT+TGG - chr5_2:50202395-50202414 Msa0774240:intron 25.0%
!!! CCAAATATTTTTTTGTAGGA+AGG + chr5_2:50202763-50202782 None:intergenic 25.0%
! CCTTCCTACAAAAAAATATT+TGG - chr5_2:50202760-50202779 Msa0774240:CDS 25.0%
! TTAACAATGATTGGAAGAAT+TGG - chr5_2:50202944-50202963 Msa0774240:five_prime_UTR 25.0%
! TAACAATGATTGGAAGAATT+GGG - chr5_2:50202945-50202964 Msa0774240:five_prime_UTR 25.0%
! ATGATAAGTCAAACAAATTC+AGG - chr5_2:50203046-50203065 Msa0774240:five_prime_UTR 25.0%
! TGATAAGTCAAACAAATTCA+GGG - chr5_2:50203047-50203066 Msa0774240:five_prime_UTR 25.0%
CAAGAAAAAAAAGTAGTAGG+TGG + chr5_2:50198520-50198539 None:intergenic 30.0%
!!! CACCTACTACTTTTTTTTCT+TGG - chr5_2:50198518-50198537 Msa0774240:three_prime_UTR 30.0%
CTTTCTTTCTAACACTTTCA+GGG + chr5_2:50198603-50198622 None:intergenic 30.0%
ACTTTCTTTCTAACACTTTC+AGG + chr5_2:50198604-50198623 None:intergenic 30.0%
AAATCATCACAACTTGAGTT+TGG + chr5_2:50198769-50198788 None:intergenic 30.0%
AAAATCGCCGACAAAAATAA+GGG + chr5_2:50198968-50198987 None:intergenic 30.0%
GTGCAATGATTTCATGAAAT+TGG - chr5_2:50198995-50199014 Msa0774240:CDS 30.0%
! GTAAAGTTGTTCTAGCTATA+AGG - chr5_2:50199129-50199148 Msa0774240:CDS 30.0%
CTAGCTATAAGGAAATTTGA+AGG - chr5_2:50199140-50199159 Msa0774240:CDS 30.0%
ACTAGTCAAATCTTTCTCTA+TGG - chr5_2:50199449-50199468 Msa0774240:intron 30.0%
AGGAAAAAAATTATGGCATG+TGG + chr5_2:50199628-50199647 None:intergenic 30.0%
TAAGTACTCTTGTCAAGTAT+TGG - chr5_2:50199761-50199780 Msa0774240:intron 30.0%
! TTGAAATGGGTCAGATATTT+TGG - chr5_2:50199897-50199916 Msa0774240:intron 30.0%
AAGGATAACTTATTATGGGA+TGG - chr5_2:50199938-50199957 Msa0774240:intron 30.0%
! GTACCATAAGCTTACATTTT+AGG + chr5_2:50200321-50200340 None:intergenic 30.0%
TTAAGGTTGTGTCTTACTTA+TGG + chr5_2:50200345-50200364 None:intergenic 30.0%
! AATTTTTACAGTCAAGGCTT+AGG - chr5_2:50200365-50200384 Msa0774240:CDS 30.0%
ACCTATGGACAATGTATAAT+TGG + chr5_2:50200420-50200439 None:intergenic 30.0%
TAGATGTTTGTCACTAAAAG+TGG - chr5_2:50200510-50200529 Msa0774240:intron 30.0%
GTAGTTCAGCTAATAACTAA+GGG + chr5_2:50200626-50200645 None:intergenic 30.0%
AGTAGTTCAGCTAATAACTA+AGG + chr5_2:50200627-50200646 None:intergenic 30.0%
GAAATAAAGAGGCAATAAAG+AGG + chr5_2:50200719-50200738 None:intergenic 30.0%
AGAGTAAAGGAGAAATAAAG+AGG + chr5_2:50200730-50200749 None:intergenic 30.0%
AAAGAAAATGAAAAACCGCT+TGG + chr5_2:50200956-50200975 None:intergenic 30.0%
TTAAGTTAATTGTTTCCCAC+AGG - chr5_2:50201072-50201091 Msa0774240:intron 30.0%
CCATGAATGATTATCAACAA+TGG + chr5_2:50201135-50201154 None:intergenic 30.0%
!! CCATTGTTGATAATCATTCA+TGG - chr5_2:50201132-50201151 Msa0774240:intron 30.0%
AATCATTCATGGAGAAAGTA+TGG - chr5_2:50201143-50201162 Msa0774240:intron 30.0%
! ATCATTCATGGAGAAAGTAT+GGG - chr5_2:50201144-50201163 Msa0774240:intron 30.0%
TTAAACTGACATTTGTAGCA+AGG - chr5_2:50201299-50201318 Msa0774240:intron 30.0%
TAAACTGACATTTGTAGCAA+GGG - chr5_2:50201300-50201319 Msa0774240:intron 30.0%
! TTTTGAATGATCACTTGCAT+AGG + chr5_2:50201359-50201378 None:intergenic 30.0%
GAATCTTCTTGAATGTACTT+TGG + chr5_2:50201384-50201403 None:intergenic 30.0%
ACCATATTTGATTCCTTAAC+CGG - chr5_2:50201406-50201425 Msa0774240:intron 30.0%
GTTTCTCTTATAAATAGGAC+CGG + chr5_2:50201533-50201552 None:intergenic 30.0%
CCCAAGTTTCTCTTATAAAT+AGG + chr5_2:50201538-50201557 None:intergenic 30.0%
CCTATCTATAAGAGAAAGTT+AGG + chr5_2:50201620-50201639 None:intergenic 30.0%
CCTAACTTTCTCTTATAGAT+AGG - chr5_2:50201617-50201636 Msa0774240:intron 30.0%
TGTCCTAAGTATTTGGATTA+GGG + chr5_2:50201967-50201986 None:intergenic 30.0%
TTGTCCTAAGTATTTGGATT+AGG + chr5_2:50201968-50201987 None:intergenic 30.0%
TTAGCCAAAAACAATTTCCA+AGG - chr5_2:50202052-50202071 Msa0774240:intron 30.0%
AATTCAGTTTGGTCAAACTA+GGG + chr5_2:50202165-50202184 None:intergenic 30.0%
AAATTCAGTTTGGTCAAACT+AGG + chr5_2:50202166-50202185 None:intergenic 30.0%
! TTTGACCAAACTGAATTTTG+TGG - chr5_2:50202168-50202187 Msa0774240:intron 30.0%
TCAATAAACTGAACTAGACA+TGG - chr5_2:50202246-50202265 Msa0774240:intron 30.0%
TGTTCACATAAAGATGATCA+AGG - chr5_2:50202326-50202345 Msa0774240:intron 30.0%
TATGTAGTTTGATACATGTC+AGG + chr5_2:50202392-50202411 None:intergenic 30.0%
!! TCATTAGAAGTACTTGCTTT+AGG + chr5_2:50202443-50202462 None:intergenic 30.0%
TAAAGCAAGTACTTCTAATG+AGG - chr5_2:50202442-50202461 Msa0774240:intron 30.0%
!!! TCTTGTTTTATAGTTAGGCT+TGG + chr5_2:50202509-50202528 None:intergenic 30.0%
TCACATTCCATAACATTACT+CGG + chr5_2:50202551-50202570 None:intergenic 30.0%
! AAAATCTAGCACTGGAATTT+GGG - chr5_2:50202600-50202619 Msa0774240:intron 30.0%
!! CTTTTGACTATCAATTCTCA+TGG - chr5_2:50202793-50202812 Msa0774240:CDS 30.0%
TTGCTTGATGTTATTAGCAA+AGG - chr5_2:50202886-50202905 Msa0774240:exon 30.0%
TGCTTGATGTTATTAGCAAA+GGG - chr5_2:50202887-50202906 Msa0774240:exon 30.0%
!! TGTTGCTTTGGTAAATCTTT+AGG - chr5_2:50203009-50203028 Msa0774240:five_prime_UTR 30.0%
! GTTGCTTTGGTAAATCTTTA+GGG - chr5_2:50203010-50203029 Msa0774240:five_prime_UTR 30.0%
TTGCTTTGGTAAATCTTTAG+GGG - chr5_2:50203011-50203030 Msa0774240:five_prime_UTR 30.0%
CTGAAGAAGAATCTTGAGTT+TGG + chr5_2:50198665-50198684 None:intergenic 35.0%
CAAAATCGCCGACAAAAATA+AGG + chr5_2:50198969-50198988 None:intergenic 35.0%
!!! CTTATTTTTGTCGGCGATTT+TGG - chr5_2:50198967-50198986 Msa0774240:CDS 35.0%
TCATGAAATTGGGAACTGTA+CGG - chr5_2:50199006-50199025 Msa0774240:CDS 35.0%
TTGCTTATAATAGTGATCGG+AGG - chr5_2:50199278-50199297 Msa0774240:intron 35.0%
! GGCTTACATTTTAGACTACT+TGG - chr5_2:50199470-50199489 Msa0774240:intron 35.0%
! GACTCAATTAATTTGGAACG+AGG + chr5_2:50199684-50199703 None:intergenic 35.0%
AGCAAACTAGCAGACTATTA+CGG - chr5_2:50200272-50200291 Msa0774240:intron 35.0%
! TTACGGGCTTTCTAAAAGTT+AGG - chr5_2:50200289-50200308 Msa0774240:intron 35.0%
TCAAGGCTTAGGAAAAAGTA+TGG - chr5_2:50200376-50200395 Msa0774240:CDS 35.0%
GCCAATTATACATTGTCCAT+AGG - chr5_2:50200416-50200435 Msa0774240:intron 35.0%
ATAACTAAGGGTGAGAATCA+TGG + chr5_2:50200614-50200633 None:intergenic 35.0%
AATCTGATTGTATGTGGTTC+AGG - chr5_2:50200801-50200820 Msa0774240:intron 35.0%
GACTATGAGTAAACACGAAA+GGG + chr5_2:50200827-50200846 None:intergenic 35.0%
ATGAGTGTTTCAAATCCAAG+CGG - chr5_2:50200938-50200957 Msa0774240:intron 35.0%
! AACAATGGTTTGGGAAACTA+TGG + chr5_2:50201120-50201139 None:intergenic 35.0%
!! ACATGATTGGTTCTGTTACT+AGG + chr5_2:50201329-50201348 None:intergenic 35.0%
TTTGGGAAATGCTAACAAGT+GGG + chr5_2:50201436-50201455 None:intergenic 35.0%
ATTTGGGAAATGCTAACAAG+TGG + chr5_2:50201437-50201456 None:intergenic 35.0%
CAAAATTACACCAAACGAGT+TGG - chr5_2:50201474-50201493 Msa0774240:intron 35.0%
!! ACCAAACGAGTTGGTTTAAT+CGG - chr5_2:50201483-50201502 Msa0774240:intron 35.0%
CTTTCTCTTATAGATAGGAC+CGG - chr5_2:50201622-50201641 Msa0774240:intron 35.0%
CAGTTAAAAAATACTCCCTC+CGG + chr5_2:50201644-50201663 None:intergenic 35.0%
CAATTTAGATGAGGTTTCAG+TGG + chr5_2:50202111-50202130 None:intergenic 35.0%
! TTTTGTGGGCAATTTAGATG+AGG + chr5_2:50202120-50202139 None:intergenic 35.0%
GTTATTGACAGTTTGGCAAT+CGG + chr5_2:50202143-50202162 None:intergenic 35.0%
AACTAGGGTTATTGACAGTT+TGG + chr5_2:50202150-50202169 None:intergenic 35.0%
ACTGACCACAAAATTCAGTT+TGG + chr5_2:50202176-50202195 None:intergenic 35.0%
AGAAACTCCGAGTAATGTTA+TGG - chr5_2:50202541-50202560 Msa0774240:intron 35.0%
AGTGTTTCAAAATCTAGCAC+TGG - chr5_2:50202592-50202611 Msa0774240:intron 35.0%
! CAAAATCTAGCACTGGAATT+TGG - chr5_2:50202599-50202618 Msa0774240:intron 35.0%
! AAATCTAGCACTGGAATTTG+GGG - chr5_2:50202601-50202620 Msa0774240:intron 35.0%
! TCTCCAAATTCTGAAAACGA+AGG - chr5_2:50202829-50202848 Msa0774240:CDS 35.0%
CTGCTTCTGTTAACAATGAT+TGG - chr5_2:50202935-50202954 Msa0774240:five_prime_UTR 35.0%
ATAGGAATCGAAAAAAGGAG+AGG - chr5_2:50203082-50203101 Msa0774240:five_prime_UTR 35.0%
AGTAGAAAGAAGGGAAGAAG+AGG - chr5_2:50198826-50198845 Msa0774240:exon 40.0%
GAAGAGGTTGCTACAAAAGA+AGG - chr5_2:50198842-50198861 Msa0774240:CDS 40.0%
!! CGTATTTGGTTTGAGGTGTA+CGG - chr5_2:50199030-50199049 Msa0774240:CDS 40.0%
!! CGTATTTGGTTTGAGGTGTA+CGG - chr5_2:50199030-50199049 Msa0774240:CDS 40.0%
CTTATAATAGTGATCGGAGG+AGG - chr5_2:50199281-50199300 Msa0774240:intron 40.0%
TTCCTCTAGACTTATCAAGC+TGG - chr5_2:50199643-50199662 Msa0774240:intron 40.0%
GCAAACTAGCAGACTATTAC+GGG - chr5_2:50200273-50200292 Msa0774240:intron 40.0%
! ACATAGCCTTAGAATAGTCG+AGG - chr5_2:50200584-50200603 Msa0774240:intron 40.0%
GTGTTGTCGAACAAGAAAGT+TGG + chr5_2:50200653-50200672 None:intergenic 40.0%
AGGCTATCGCTATAGAGTAA+AGG + chr5_2:50200743-50200762 None:intergenic 40.0%
TTACTCTATAGCGATAGCCT+AGG - chr5_2:50200743-50200762 Msa0774240:intron 40.0%
TACTCTATAGCGATAGCCTA+GGG - chr5_2:50200744-50200763 Msa0774240:intron 40.0%
GTCTATGATATAGAAGCCCT+AGG + chr5_2:50200763-50200782 None:intergenic 40.0%
GGACTATGAGTAAACACGAA+AGG + chr5_2:50200828-50200847 None:intergenic 40.0%
GTATGGGCAGAAGAAAATCA+TGG - chr5_2:50201160-50201179 Msa0774240:intron 40.0%
!! CATAGGCTAGCTTACATGAT+TGG + chr5_2:50201342-50201361 None:intergenic 40.0%
GCCGGTTAAGGAATCAAATA+TGG + chr5_2:50201410-50201429 None:intergenic 40.0%
TTGGGAAATGCTAACAAGTG+GGG + chr5_2:50201435-50201454 None:intergenic 40.0%
ACCGATTAAACCAACTCGTT+TGG + chr5_2:50201487-50201506 None:intergenic 40.0%
!! AAACGAGTTGGTTTAATCGG+TGG - chr5_2:50201486-50201505 Msa0774240:intron 40.0%
! ACCAAACTTTTTACTCCCTC+CGG - chr5_2:50201511-50201530 Msa0774240:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG + chr5_2:50201529-50201548 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG + chr5_2:50201530-50201549 None:intergenic 40.0%
! CCTAAGTATTTGGATTAGGG+AGG + chr5_2:50201964-50201983 None:intergenic 40.0%
CCTCCCTAATCCAAATACTT+AGG - chr5_2:50201961-50201980 Msa0774240:intron 40.0%
!! AGTTTGGCAATCGGTTTTGT+GGG + chr5_2:50202134-50202153 None:intergenic 40.0%
! ATGTGTCTTTTGCACCTGTT+TGG + chr5_2:50202363-50202382 None:intergenic 40.0%
!! AGAAGTACTTGCTTTAGGAG+TGG + chr5_2:50202438-50202457 None:intergenic 40.0%
!! ATAGTTAGGCTTGGTGTTGT+TGG + chr5_2:50202500-50202519 None:intergenic 40.0%
! GCACCTTCGTTTTCAGAATT+TGG + chr5_2:50202835-50202854 None:intergenic 40.0%
! AAGGTGCTTAAACGCAAATG+TGG - chr5_2:50202848-50202867 Msa0774240:CDS 40.0%
CAATGATTGGAAGAATTGGG+TGG - chr5_2:50202948-50202967 Msa0774240:five_prime_UTR 40.0%
! AAGGAGGATGTATGTTGCTT+TGG - chr5_2:50202997-50203016 Msa0774240:five_prime_UTR 40.0%
GCTGGATAGGAATCGAAAAA+AGG - chr5_2:50203077-50203096 Msa0774240:five_prime_UTR 40.0%
!! AGTAGGTGGGTGTTGTTTGA+GGG + chr5_2:50198506-50198525 None:intergenic 45.0%
!! TAGTAGGTGGGTGTTGTTTG+AGG + chr5_2:50198507-50198526 None:intergenic 45.0%
CTTCAGAACGAGAATCCCTA+TGG - chr5_2:50198679-50198698 Msa0774240:three_prime_UTR 45.0%
GCAAGATGATCAGCTCCATA+GGG + chr5_2:50198697-50198716 None:intergenic 45.0%
AGCAAGATGATCAGCTCCAT+AGG + chr5_2:50198698-50198717 None:intergenic 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_2:50199023-50199042 Msa0774240:CDS 45.0%
TTGAGGTGTACGGACGTATT+TGG - chr5_2:50199040-50199059 Msa0774240:CDS 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_2:50199023-50199042 Msa0774240:CDS 45.0%
TTGAGGTGTACGGACGTATT+TGG - chr5_2:50199040-50199059 Msa0774240:CDS 45.0%
!! GTACGGACGTATTTGGTTTG+AGG - chr5_2:50199023-50199042 Msa0774240:CDS 45.0%
AGCCAGCTTGATAAGTCTAG+AGG + chr5_2:50199648-50199667 None:intergenic 45.0%
AGCCTTAGAATAGTCGAGGA+CGG - chr5_2:50200588-50200607 Msa0774240:intron 45.0%
TCATGGATTCTGAATTCCCC+AGG - chr5_2:50201177-50201196 Msa0774240:intron 45.0%
ACTGACATTTGTAGCAAGGG+AGG - chr5_2:50201303-50201322 Msa0774240:intron 45.0%
TGGGAAATGCTAACAAGTGG+GGG + chr5_2:50201434-50201453 None:intergenic 45.0%
ACCGGAGGGAGTAAAAAGTT+TGG + chr5_2:50201515-50201534 None:intergenic 45.0%
TCTCTTATAGATAGGACCGG+AGG - chr5_2:50201625-50201644 Msa0774240:intron 45.0%
CTCTTATAGATAGGACCGGA+GGG - chr5_2:50201626-50201645 Msa0774240:intron 45.0%
TGAGGTTTCAGTGGAAGAAG+AGG + chr5_2:50202102-50202121 None:intergenic 45.0%
!! CAGTTTGGCAATCGGTTTTG+TGG + chr5_2:50202135-50202154 None:intergenic 45.0%
TACCTCACAGGAGTTACTTC+AGG - chr5_2:50202303-50202322 Msa0774240:intron 45.0%
! TGGTAACGCATATGTGGTCA+AGG - chr5_2:50202978-50202997 Msa0774240:five_prime_UTR 45.0%
TAACGCATATGTGGTCAAGG+AGG - chr5_2:50202981-50203000 Msa0774240:five_prime_UTR 45.0%
!! CAAATTCAGGGTATTGTCGC+TGG - chr5_2:50203059-50203078 Msa0774240:five_prime_UTR 45.0%
GGAATCGAAAAAAGGAGAGG+TGG - chr5_2:50203085-50203104 Msa0774240:five_prime_UTR 45.0%
ATCGAAAAAAGGAGAGGTGG+AGG - chr5_2:50203088-50203107 Msa0774240:five_prime_UTR 45.0%
GAGGGAAGAGGAGAGAAGAT+GGG + chr5_2:50198488-50198507 None:intergenic 50.0%
TGAGGGAAGAGGAGAGAAGA+TGG + chr5_2:50198489-50198508 None:intergenic 50.0%
!! TGGGTGTTGTTTGAGGGAAG+AGG + chr5_2:50198500-50198519 None:intergenic 50.0%
CGTGCTGAGATCTTTCACTG+AGG - chr5_2:50198723-50198742 Msa0774240:three_prime_UTR 50.0%
GGGAACTGTACGGACGTATT+TGG - chr5_2:50199016-50199035 Msa0774240:CDS 50.0%
! GGAAGAGTGCAGCTGAGATA+TGG - chr5_2:50201093-50201112 Msa0774240:intron 50.0%
GGTTTCAGTGGAAGAAGAGG+TGG + chr5_2:50202099-50202118 None:intergenic 50.0%
CACCTGAAGTAACTCCTGTG+AGG + chr5_2:50202308-50202327 None:intergenic 50.0%
AGGTTGCTCAGCAACCAAAC+AGG - chr5_2:50202346-50202365 Msa0774240:intron 50.0%
!! AAGAATTGGGTGGTGCTGCA+TGG - chr5_2:50202958-50202977 Msa0774240:five_prime_UTR 50.0%
! GCTGCATGGTAACGCATATG+TGG - chr5_2:50202972-50202991 Msa0774240:five_prime_UTR 50.0%
!! TCAGGGTATTGTCGCTGGAT+AGG - chr5_2:50203064-50203083 Msa0774240:five_prime_UTR 50.0%
GAAAAAAGGAGAGGTGGAGG+AGG - chr5_2:50203091-50203110 Msa0774240:five_prime_UTR 50.0%
GGTAAGGAAGGGGACACAAT+AGG - chr5_2:50203112-50203131 Msa0774240:five_prime_UTR 50.0%
AAGGGGACACAATAGGTGTG+TGG - chr5_2:50203119-50203138 Msa0774240:five_prime_UTR 50.0%
GGCCGTCCTCGACTATTCTA+AGG + chr5_2:50200593-50200612 None:intergenic 55.0%
CTCAGCTGCACTCTTCCTGT+GGG + chr5_2:50201090-50201109 None:intergenic 55.0%
TCTCAGCTGCACTCTTCCTG+TGG + chr5_2:50201091-50201110 None:intergenic 55.0%
TAGGAGTGGCGTTGCATGTG+TGG + chr5_2:50202424-50202443 None:intergenic 55.0%
AAGGAGAGGTGGAGGAGGTA+AGG - chr5_2:50203096-50203115 Msa0774240:five_prime_UTR 55.0%
AGAGGTGGAGGAGGTAAGGA+AGG - chr5_2:50203100-50203119 Msa0774240:five_prime_UTR 55.0%
GAGGTGGAGGAGGTAAGGAA+GGG - chr5_2:50203101-50203120 Msa0774240:five_prime_UTR 55.0%
AGGTGGAGGAGGTAAGGAAG+GGG - chr5_2:50203102-50203121 Msa0774240:five_prime_UTR 55.0%
! ATGCTAACAAGTGGGGGCGC+CGG + chr5_2:50201428-50201447 None:intergenic 60.0%
!! ACAAGTGGGGGCGCCGGTTA+AGG + chr5_2:50201422-50201441 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 50198346 50203144 50198346 ID=Msa0774240;Name=Msa0774240
chr5_2 mRNA 50198346 50203144 50198346 ID=Msa0774240-mRNA-1;Parent=Msa0774240;Name=Msa0774240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=240|1|1|1|1|1|3|492|240
chr5_2 exon 50198346 50199177 50198346 ID=Msa0774240-mRNA-1:exon:14971;Parent=Msa0774240-mRNA-1
chr5_2 exon 50200292 50200396 50200292 ID=Msa0774240-mRNA-1:exon:14970;Parent=Msa0774240-mRNA-1
chr5_2 exon 50202627 50203144 50202627 ID=Msa0774240-mRNA-1:exon:14969;Parent=Msa0774240-mRNA-1
chr5_2 five_prime_UTR 50202905 50203144 50202905 ID=Msa0774240-mRNA-1:five_prime_utr;Parent=Msa0774240-mRNA-1
chr5_2 CDS 50202627 50202904 50202627 ID=Msa0774240-mRNA-1:cds;Parent=Msa0774240-mRNA-1
chr5_2 CDS 50200292 50200396 50200292 ID=Msa0774240-mRNA-1:cds;Parent=Msa0774240-mRNA-1
chr5_2 CDS 50198838 50199177 50198838 ID=Msa0774240-mRNA-1:cds;Parent=Msa0774240-mRNA-1
chr5_2 three_prime_UTR 50198346 50198837 50198346 ID=Msa0774240-mRNA-1:three_prime_utr;Parent=Msa0774240-mRNA-1
Gene Sequence

>Msa0774240

ATGGATAATAATATCCCTGAAAGTGTTAGAAAGAAAGTGATAATCAAAGAACTTGTAAAGGGTCAAGAAGCTGCAACCAAACTCAAGATTCTTCTTCAGAACGAGAATCCCTATGGAGCTGATCATCTTGCTGCAAACGTGCTGAGATCTTTCACTGAGGCTCTTTCTATTATCTCTCAACCAAACTCAAGTTGTGATGATTTTCTGAATCTGATTAAATCTGCAGATTCAATTAGTGAAAGTAGAAAGAAGGGAAGAAGAGGTTGCTACAAAAGAAGGAAGAGTGCAGCTGAGATATGGACCATAGTTTCCCAAACCATTGTTGATAATCATTCATGGAGAAAGTATGGGCAGAAGAAAATCATGGATTCTGAATTCCCCAGGAGTTACTTCAGGTGTTCACATAAAGATGATCAAGGTTGCTCAGCAACCAAACAGGTGCAAAAGACACATGACAATCCTGACATGTATCAAACTACATACATTGGCATCCACACATGCAACGCCACTCCTAAAGCAAGTACTTCTAATGAGGCAATATTTGTGAATTCTGATGCTGAAGTAACACCAACAACACCAAGCCTAACTATAAAACAAGAATATCTCAAAGAAGAAACTCCGAGTAATGTTATGGAATGTGATGATAATGCAGATGATATGCTAGTGTTTCAAAATCTAGCACTGGAATTTGGGGACATTGAATTCAACTTTGATGAAAATTAA
Protein sequence

>Msa0774240

MDNNIPESVRKKVIIKELVKGQEAATKLKILLQNENPYGADHLAANVLRSFTEALSIISQPNSSCDDFLNLIKSADSISESRKKGRRGCYKRRKSAAEIWTIVSQTIVDNHSWRKYGQKKIMDSEFPRSYFRCSHKDDQGCSATKQVQKTHDNPDMYQTTYIGIHTCNATPKASTSNEAIFVNSDAEVTPTTPSLTIKQEYLKEETPSNVMECDDNADDMLVFQNLALEFGDIEFNFDEN*